AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0743990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743990 MtrunA17_Chr5g0446461 95.833 144 6 0 1 144 1 144 4.92e-101 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0743990 AT5G55640.1 57.432 148 57 4 1 144 1 146 4.82e-52 162

Find 85 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGACCTTTGCAGCAGAATT+TGG 0.138709 5_1:+64617227 None:intergenic
CCCTCCCAAACCCTAAAATT+AGG 0.157658 5_1:-64618532 Msa0743990:five_prime_UTR
TTTATTTCTTTCATTATTCT+TGG 0.171908 5_1:+64616516 None:intergenic
TATAACAGAAAGTGCTAAAT+TGG 0.230034 5_1:+64616769 None:intergenic
ATAGTTCCTTGTGGAAATTA+TGG 0.237298 5_1:-64616628 Msa0743990:three_prime_UTR
CCTCCCAAACCCTAAAATTA+GGG 0.263482 5_1:-64618531 Msa0743990:five_prime_UTR
TCTATCAATTCAATTTGTTT+TGG 0.266660 5_1:-64618494 Msa0743990:five_prime_UTR
GATAATTCTGAACAAGAAAA+AGG 0.270138 5_1:+64616491 None:intergenic
CTTGTTCAGAATTATCTTCC+AGG 0.310330 5_1:-64616484 Msa0743990:three_prime_UTR
TGGATTTGTGATTCCGAGTT+TGG 0.316309 5_1:-64617300 Msa0743990:CDS
TAGTTCCTTGTGGAAATTAT+GGG 0.328956 5_1:-64616627 Msa0743990:three_prime_UTR
AACCGCTGCTTCCGGTTTGA+TGG 0.346467 5_1:+64617022 None:intergenic
TCCTCTCAAACTCAGCTTCA+TGG 0.353538 5_1:+64616849 None:intergenic
TTATTTCTTTCATTATTCTT+GGG 0.357586 5_1:+64616517 None:intergenic
TTCTTGAAGTTATTTATTCT+CGG 0.368947 5_1:-64616799 Msa0743990:three_prime_UTR
TTTGCTTGAACCGCTGCTTC+CGG 0.394039 5_1:+64617014 None:intergenic
CCATGGATTTCAATGCGAAA+TGG 0.398486 5_1:+64618429 None:intergenic
AGAGAATTAGTGGGACAGGT+AGG 0.410966 5_1:-64616973 Msa0743990:CDS
GGATTTGTGATTCCGAGTTT+GGG 0.411780 5_1:-64617299 Msa0743990:CDS
GTCATCGTCTTGTTGTTGAA+TGG 0.422378 5_1:+64618362 None:intergenic
GGGCGATAAAGCCCGATTGA+TGG 0.426364 5_1:+64618450 None:intergenic
TCATCGTCTTGTTGTTGAAT+GGG 0.438294 5_1:+64618363 None:intergenic
AGAAGCGAAGCAAATGAAAC+AGG 0.459852 5_1:-64616554 Msa0743990:three_prime_UTR
GAAGCTGATAAGAGAATTAG+TGG 0.460182 5_1:-64616983 Msa0743990:CDS
CATGGATTTCAATGCGAAAT+GGG 0.464101 5_1:+64618430 None:intergenic
AAGGAAGAGAACATCTATCT+TGG 0.472603 5_1:-64617091 Msa0743990:CDS
GAGAATTAGTGGGACAGGTA+GGG 0.477992 5_1:-64616972 Msa0743990:CDS
GATAACCTGAGGGAGCTTGT+AGG 0.494617 5_1:-64616938 Msa0743990:CDS
GATAAGAGAATTAGTGGGAC+AGG 0.498006 5_1:-64616977 Msa0743990:CDS
AAGAGGTGATTCCATCAAAC+CGG 0.500577 5_1:-64617033 Msa0743990:CDS
TGTGGATCTAACCAGTCCTT+AGG 0.501906 5_1:+64616875 None:intergenic
TCCAGGCTTATATATTAGCA+TGG 0.502308 5_1:-64616467 Msa0743990:three_prime_UTR
GCGAAGGAGGCGCTCCGTGT+GGG 0.523316 5_1:+64617068 None:intergenic
AACAACAAGACGATGACGAG+TGG 0.523988 5_1:-64618356 Msa0743990:CDS
CCCCACCTACAAGCTCCCTC+AGG 0.528996 5_1:+64616933 None:intergenic
CCAGGCTTATATATTAGCAT+GGG 0.529187 5_1:-64616466 Msa0743990:three_prime_UTR
ATCTCCAAATTCTGCTGCAA+AGG 0.530813 5_1:-64617231 Msa0743990:intron
AGCAAGTGTTGGCATGGCAA+AGG 0.530837 5_1:-64616906 Msa0743990:CDS
AACCTGAGGGAGCTTGTAGG+TGG 0.535590 5_1:-64616935 Msa0743990:CDS
CCATTTCGCATTGAAATCCA+TGG 0.540903 5_1:-64618429 Msa0743990:five_prime_UTR
CGTGTAGCATATAAGTTGAC+CGG 0.541664 5_1:+64616320 None:intergenic
CCCATGCTAATATATAAGCC+TGG 0.548267 5_1:+64616466 None:intergenic
ACCTGAGGGAGCTTGTAGGT+GGG 0.550474 5_1:-64616934 Msa0743990:CDS
GCAAGTGTTGGCATGGCAAA+GGG 0.551898 5_1:-64616905 Msa0743990:CDS
TTGATGCATCATTCAAGACA+TGG 0.555753 5_1:-64616739 Msa0743990:three_prime_UTR
TGCGAAGGAGGCGCTCCGTG+TGG 0.563140 5_1:+64617067 None:intergenic
GACAGGTAGGGAGAATAAAG+TGG 0.564045 5_1:-64616960 Msa0743990:CDS
CCTGAGGGAGCTTGTAGGTG+GGG 0.566679 5_1:-64616933 Msa0743990:CDS
GCCATGAAGCTGAGTTTGAG+AGG 0.567950 5_1:-64616850 Msa0743990:CDS
AATATTGAACCACCCACTCA+AGG 0.572840 5_1:+64618564 None:intergenic
AGAAGTGGATTGCAGTGAAG+AGG 0.572913 5_1:+64618386 None:intergenic
GAGTCTTCAATTCCCAAACT+CGG 0.573667 5_1:+64617287 None:intergenic
TGATGCATCATTCAAGACAT+GGG 0.576868 5_1:-64616738 Msa0743990:three_prime_UTR
GGCAAAGGGATCCTCTCCTA+AGG 0.577485 5_1:-64616891 Msa0743990:CDS
AGGGATCCTCTCCTAAGGAC+TGG 0.582225 5_1:-64616886 Msa0743990:CDS
TTCGCAATCAAAACAACAAG+AGG 0.584941 5_1:-64617050 Msa0743990:CDS
ATATTGAACCACCCACTCAA+GGG 0.588932 5_1:+64618565 None:intergenic
GAAGTGGATTGCAGTGAAGA+GGG 0.590735 5_1:+64618387 None:intergenic
TTGCAGTGAAGAGGGCTCCA+TGG 0.592706 5_1:+64618395 None:intergenic
AACATCTATCTTGGCCCACA+CGG 0.594812 5_1:-64617082 Msa0743990:CDS
ACAACAAGACGATGACGAGT+GGG 0.595529 5_1:-64618355 Msa0743990:CDS
TTGTTGTTGAATGGGAGAAG+TGG 0.596079 5_1:+64618371 None:intergenic
GGAGAAAGCAAGTGTTGGCA+TGG 0.597548 5_1:-64616912 Msa0743990:CDS
ATAACTGTACTTTAGTAATG+TGG 0.597886 5_1:-64616429 Msa0743990:three_prime_UTR
AACTTTATTATCAAAAGACC+AGG 0.598120 5_1:+64616679 None:intergenic
CAAAAGTACCCTTGAGTGGG+TGG 0.599799 5_1:-64618573 Msa0743990:five_prime_UTR
TTGTTGGTTGTAGACACTGA+TGG 0.603452 5_1:-64617320 Msa0743990:intron
TTCCATCAAACCGGAAGCAG+CGG 0.611456 5_1:-64617024 Msa0743990:CDS
CCATGGTCATCGCTTTACCA+TGG 0.614834 5_1:-64618412 Msa0743990:exon
AATTATACTATAGTTCCTTG+TGG 0.618225 5_1:-64616637 Msa0743990:three_prime_UTR
ACGACAAAAGTACCCTTGAG+TGG 0.621941 5_1:-64618577 Msa0743990:five_prime_UTR
ATTCAAGACATGGGTTACAG+AGG 0.628755 5_1:-64616729 Msa0743990:three_prime_UTR
GGTGGGGAGAAAGCAAGTGT+TGG 0.632585 5_1:-64616917 Msa0743990:CDS
AACTCAGCTTCATGGCAATG+TGG 0.632831 5_1:+64616857 None:intergenic
AGAATAAAGTGGATAACCTG+AGG 0.644766 5_1:-64616949 Msa0743990:CDS
CGACAAAAGTACCCTTGAGT+GGG 0.644888 5_1:-64618576 Msa0743990:five_prime_UTR
ATCTAACCAGTCCTTAGGAG+AGG 0.645040 5_1:+64616880 None:intergenic
CTGACAATAAGTTTATCACC+TGG 0.656352 5_1:-64616697 Msa0743990:three_prime_UTR
GAATAAAGTGGATAACCTGA+GGG 0.663435 5_1:-64616948 Msa0743990:CDS
CCATGGTAAAGCGATGACCA+TGG 0.665734 5_1:+64618412 None:intergenic
TCAAGCCCATAATTTCCACA+AGG 0.668520 5_1:+64616622 None:intergenic
AAGCTGATAAGAGAATTAGT+GGG 0.703929 5_1:-64616982 Msa0743990:CDS
CAACAAGACGATGACGAGTG+GGG 0.703979 5_1:-64618354 Msa0743990:intron
ATGAAGCTGAGTTTGAGAGG+AGG 0.745587 5_1:-64616847 Msa0743990:CDS
TGAAACAGGAAGATACAGAG+TGG 0.752550 5_1:-64616540 Msa0743990:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATCATAAATCATATTT+AGG + chr5_1:64617232-64617251 None:intergenic 10.0%
!! TTATATCATAAATCATATTT+AGG + chr5_1:64617232-64617251 None:intergenic 10.0%
!!! TAAAATAAACCCTAATTTTA+GGG + chr5_1:64616395-64616414 None:intergenic 15.0%
!!! TTAAAATAAACCCTAATTTT+AGG + chr5_1:64616396-64616415 None:intergenic 15.0%
!! ATTAAAATCCCAATTATTTA+GGG + chr5_1:64616687-64616706 None:intergenic 15.0%
!! AATTAAAATCCCAATTATTT+AGG + chr5_1:64616688-64616707 None:intergenic 15.0%
!!! CTTATTGATTTATTGAATTT+AGG - chr5_1:64616768-64616787 Msa0743990:three_prime_UTR 15.0%
!!! TCTTCTTAATTTTATTTTCT+GGG - chr5_1:64616866-64616885 Msa0743990:CDS 15.0%
!! TTAATGATTAAATAAAGTAC+AGG + chr5_1:64616908-64616927 None:intergenic 15.0%
!!! ATAGCATTTTACTTTTTTAA+TGG - chr5_1:64617532-64617551 Msa0743990:intron 15.0%
!!! TGTTTTTTTATAGAATAAGA+AGG - chr5_1:64617804-64617823 Msa0743990:intron 15.0%
!!! TTATTTCTTTCATTATTCTT+GGG + chr5_1:64618400-64618419 None:intergenic 15.0%
!!! TTTATTTCTTTCATTATTCT+TGG + chr5_1:64618401-64618420 None:intergenic 15.0%
!!! TAAAATAAACCCTAATTTTA+GGG + chr5_1:64616395-64616414 None:intergenic 15.0%
!!! TTAAAATAAACCCTAATTTT+AGG + chr5_1:64616396-64616415 None:intergenic 15.0%
!! ATTAAAATCCCAATTATTTA+GGG + chr5_1:64616687-64616706 None:intergenic 15.0%
!! AATTAAAATCCCAATTATTT+AGG + chr5_1:64616688-64616707 None:intergenic 15.0%
!!! CTTATTGATTTATTGAATTT+AGG - chr5_1:64616768-64616787 Msa0743990:three_prime_UTR 15.0%
!!! TCTTCTTAATTTTATTTTCT+GGG - chr5_1:64616866-64616885 Msa0743990:CDS 15.0%
!! TTAATGATTAAATAAAGTAC+AGG + chr5_1:64616908-64616927 None:intergenic 15.0%
!!! ATAGCATTTTACTTTTTTAA+TGG - chr5_1:64617532-64617551 Msa0743990:intron 15.0%
!!! TGTTTTTTTATAGAATAAGA+AGG - chr5_1:64617804-64617823 Msa0743990:intron 15.0%
!!! TTATTTCTTTCATTATTCTT+GGG + chr5_1:64618400-64618419 None:intergenic 15.0%
!!! TTTATTTCTTTCATTATTCT+TGG + chr5_1:64618401-64618420 None:intergenic 15.0%
!!! TCTATCAATTCAATTTGTTT+TGG - chr5_1:64616420-64616439 Msa0743990:three_prime_UTR 20.0%
!! TGATTCTGCTTAAAAAATAA+AGG + chr5_1:64616616-64616635 None:intergenic 20.0%
!!! TATTTTTTAAGCAGAATCAA+TGG - chr5_1:64616617-64616636 Msa0743990:three_prime_UTR 20.0%
!!! TTGGGATTTTAATTTTGAAT+TGG - chr5_1:64616694-64616713 Msa0743990:three_prime_UTR 20.0%
!!! ATTGATTTATTGAATTTAGG+TGG - chr5_1:64616771-64616790 Msa0743990:three_prime_UTR 20.0%
!!! GTCTTCTTAATTTTATTTTC+TGG - chr5_1:64616865-64616884 Msa0743990:CDS 20.0%
!!! CTTCTTAATTTTATTTTCTG+GGG - chr5_1:64616867-64616886 Msa0743990:CDS 20.0%
!! AGAATAGATCAGATAATTAT+TGG - chr5_1:64617200-64617219 Msa0743990:intron 20.0%
!! GAATAGATCAGATAATTATT+GGG - chr5_1:64617201-64617220 Msa0743990:intron 20.0%
!!! ACTTATTGTTTTACATAGTT+AGG - chr5_1:64617487-64617506 Msa0743990:intron 20.0%
!! GTTCTTAAATGAATATTCTT+TGG - chr5_1:64617567-64617586 Msa0743990:intron 20.0%
!! TTCTTGAAGTTATTTATTCT+CGG - chr5_1:64618115-64618134 Msa0743990:intron 20.0%
!!! TCTATCAATTCAATTTGTTT+TGG - chr5_1:64616420-64616439 Msa0743990:three_prime_UTR 20.0%
!! TGATTCTGCTTAAAAAATAA+AGG + chr5_1:64616616-64616635 None:intergenic 20.0%
!!! TATTTTTTAAGCAGAATCAA+TGG - chr5_1:64616617-64616636 Msa0743990:three_prime_UTR 20.0%
!!! TTGGGATTTTAATTTTGAAT+TGG - chr5_1:64616694-64616713 Msa0743990:three_prime_UTR 20.0%
!!! ATTGATTTATTGAATTTAGG+TGG - chr5_1:64616771-64616790 Msa0743990:three_prime_UTR 20.0%
!!! GTCTTCTTAATTTTATTTTC+TGG - chr5_1:64616865-64616884 Msa0743990:CDS 20.0%
!!! CTTCTTAATTTTATTTTCTG+GGG - chr5_1:64616867-64616886 Msa0743990:CDS 20.0%
!! AGAATAGATCAGATAATTAT+TGG - chr5_1:64617200-64617219 Msa0743990:intron 20.0%
!! GAATAGATCAGATAATTATT+GGG - chr5_1:64617201-64617220 Msa0743990:intron 20.0%
!!! ACTTATTGTTTTACATAGTT+AGG - chr5_1:64617487-64617506 Msa0743990:intron 20.0%
!! GTTCTTAAATGAATATTCTT+TGG - chr5_1:64617567-64617586 Msa0743990:intron 20.0%
!! TTCTTGAAGTTATTTATTCT+CGG - chr5_1:64618115-64618134 Msa0743990:intron 20.0%
! TAAAGGAAAGAATGAAATTG+AGG + chr5_1:64616599-64616618 None:intergenic 25.0%
! AATGGATCATCTAAGAAAAA+AGG - chr5_1:64616635-64616654 Msa0743990:three_prime_UTR 25.0%
! ATGGATCATCTAAGAAAAAA+GGG - chr5_1:64616636-64616655 Msa0743990:three_prime_UTR 25.0%
!!! AGTTTTTTTATTAAGCCTAG+CGG - chr5_1:64617012-64617031 Msa0743990:CDS 25.0%
!!! ATCAAAATTAACTTGTCTGT+TGG - chr5_1:64617384-64617403 Msa0743990:intron 25.0%
!!! TCAAAATTAACTTGTCTGTT+GGG - chr5_1:64617385-64617404 Msa0743990:intron 25.0%
!! AATATTCTTTGGACTTTTGT+TGG - chr5_1:64617578-64617597 Msa0743990:intron 25.0%
!! TGAAAGAATTGTTTCTTCTT+AGG - chr5_1:64617711-64617730 Msa0743990:intron 25.0%
!!! AATATGTAGGCTTTAGATAT+TGG - chr5_1:64617744-64617763 Msa0743990:intron 25.0%
!!! TATAACAGAAAGTGCTAAAT+TGG + chr5_1:64618148-64618167 None:intergenic 25.0%
! AACTTTATTATCAAAAGACC+AGG + chr5_1:64618238-64618257 None:intergenic 25.0%
! AATTATACTATAGTTCCTTG+TGG - chr5_1:64618277-64618296 Msa0743990:intron 25.0%
! GATAATTCTGAACAAGAAAA+AGG + chr5_1:64618426-64618445 None:intergenic 25.0%
! ATAACTGTACTTTAGTAATG+TGG - chr5_1:64618485-64618504 Msa0743990:five_prime_UTR 25.0%
! TAAAGGAAAGAATGAAATTG+AGG + chr5_1:64616599-64616618 None:intergenic 25.0%
! AATGGATCATCTAAGAAAAA+AGG - chr5_1:64616635-64616654 Msa0743990:three_prime_UTR 25.0%
! ATGGATCATCTAAGAAAAAA+GGG - chr5_1:64616636-64616655 Msa0743990:three_prime_UTR 25.0%
!!! AGTTTTTTTATTAAGCCTAG+CGG - chr5_1:64617012-64617031 Msa0743990:CDS 25.0%
!!! ATCAAAATTAACTTGTCTGT+TGG - chr5_1:64617384-64617403 Msa0743990:intron 25.0%
!!! TCAAAATTAACTTGTCTGTT+GGG - chr5_1:64617385-64617404 Msa0743990:intron 25.0%
!! AATATTCTTTGGACTTTTGT+TGG - chr5_1:64617578-64617597 Msa0743990:intron 25.0%
!! TGAAAGAATTGTTTCTTCTT+AGG - chr5_1:64617711-64617730 Msa0743990:intron 25.0%
!!! AATATGTAGGCTTTAGATAT+TGG - chr5_1:64617744-64617763 Msa0743990:intron 25.0%
!!! TATAACAGAAAGTGCTAAAT+TGG + chr5_1:64618148-64618167 None:intergenic 25.0%
! AACTTTATTATCAAAAGACC+AGG + chr5_1:64618238-64618257 None:intergenic 25.0%
! AATTATACTATAGTTCCTTG+TGG - chr5_1:64618277-64618296 Msa0743990:intron 25.0%
! GATAATTCTGAACAAGAAAA+AGG + chr5_1:64618426-64618445 None:intergenic 25.0%
! ATAACTGTACTTTAGTAATG+TGG - chr5_1:64618485-64618504 Msa0743990:five_prime_UTR 25.0%
!!! AAACCCTAATTTTAGGGTTT+GGG + chr5_1:64616389-64616408 None:intergenic 30.0%
!!! TAAACCCTAATTTTAGGGTT+TGG + chr5_1:64616390-64616409 None:intergenic 30.0%
!!! TTGCTTTTTGTTCCATCAAT+CGG - chr5_1:64616452-64616471 Msa0743990:three_prime_UTR 30.0%
! AAGAAAAAAGGGATCTTTTG+TGG - chr5_1:64616647-64616666 Msa0743990:three_prime_UTR 30.0%
TATGCGTTTCCCTAAATAAT+TGG - chr5_1:64616675-64616694 Msa0743990:three_prime_UTR 30.0%
ATGCGTTTCCCTAAATAATT+GGG - chr5_1:64616676-64616695 Msa0743990:three_prime_UTR 30.0%
!! ACACTGATTGATTCGTTTAT+TGG - chr5_1:64616719-64616738 Msa0743990:three_prime_UTR 30.0%
TCCAATTGGCAAATACTATT+CGG + chr5_1:64616817-64616836 None:intergenic 30.0%
CTCAACAAAACTAATCCAAT+TGG + chr5_1:64616831-64616850 None:intergenic 30.0%
AAGCTAGAACTTAACACATT+CGG + chr5_1:64616944-64616963 None:intergenic 30.0%
TATTGCATAGAGATGATATC+TGG - chr5_1:64616981-64617000 Msa0743990:CDS 30.0%
AGACTATATCAGATAGGATT+AGG - chr5_1:64617065-64617084 Msa0743990:CDS 30.0%
ATGATAATACTAGCAAGAGA+TGG - chr5_1:64617089-64617108 Msa0743990:CDS 30.0%
TGATAATACTAGCAAGAGAT+GGG - chr5_1:64617090-64617109 Msa0743990:CDS 30.0%
!! TAGAAAAGATGGTGGAAAAT+GGG - chr5_1:64617129-64617148 Msa0743990:intron 30.0%
AGATCAGATAATTATTGGGT+TGG - chr5_1:64617205-64617224 Msa0743990:intron 30.0%
AAGCTGATAAGAGAATTAGT+GGG - chr5_1:64617932-64617951 Msa0743990:intron 30.0%
ATAGTTCCTTGTGGAAATTA+TGG - chr5_1:64618286-64618305 Msa0743990:intron 30.0%
TAGTTCCTTGTGGAAATTAT+GGG - chr5_1:64618287-64618306 Msa0743990:intron 30.0%
GCACACAAAAATATCAAAAC+CGG - chr5_1:64618575-64618594 Msa0743990:five_prime_UTR 30.0%
!!! AAACCCTAATTTTAGGGTTT+GGG + chr5_1:64616389-64616408 None:intergenic 30.0%
!!! TAAACCCTAATTTTAGGGTT+TGG + chr5_1:64616390-64616409 None:intergenic 30.0%
!!! TTGCTTTTTGTTCCATCAAT+CGG - chr5_1:64616452-64616471 Msa0743990:three_prime_UTR 30.0%
! AAGAAAAAAGGGATCTTTTG+TGG - chr5_1:64616647-64616666 Msa0743990:three_prime_UTR 30.0%
TATGCGTTTCCCTAAATAAT+TGG - chr5_1:64616675-64616694 Msa0743990:three_prime_UTR 30.0%
ATGCGTTTCCCTAAATAATT+GGG - chr5_1:64616676-64616695 Msa0743990:three_prime_UTR 30.0%
!! ACACTGATTGATTCGTTTAT+TGG - chr5_1:64616719-64616738 Msa0743990:three_prime_UTR 30.0%
TCCAATTGGCAAATACTATT+CGG + chr5_1:64616817-64616836 None:intergenic 30.0%
CTCAACAAAACTAATCCAAT+TGG + chr5_1:64616831-64616850 None:intergenic 30.0%
AAGCTAGAACTTAACACATT+CGG + chr5_1:64616944-64616963 None:intergenic 30.0%
TATTGCATAGAGATGATATC+TGG - chr5_1:64616981-64617000 Msa0743990:CDS 30.0%
AGACTATATCAGATAGGATT+AGG - chr5_1:64617065-64617084 Msa0743990:CDS 30.0%
ATGATAATACTAGCAAGAGA+TGG - chr5_1:64617089-64617108 Msa0743990:CDS 30.0%
TGATAATACTAGCAAGAGAT+GGG - chr5_1:64617090-64617109 Msa0743990:CDS 30.0%
!! TAGAAAAGATGGTGGAAAAT+GGG - chr5_1:64617129-64617148 Msa0743990:intron 30.0%
AGATCAGATAATTATTGGGT+TGG - chr5_1:64617205-64617224 Msa0743990:intron 30.0%
AAGCTGATAAGAGAATTAGT+GGG - chr5_1:64617932-64617951 Msa0743990:intron 30.0%
ATAGTTCCTTGTGGAAATTA+TGG - chr5_1:64618286-64618305 Msa0743990:intron 30.0%
TAGTTCCTTGTGGAAATTAT+GGG - chr5_1:64618287-64618306 Msa0743990:intron 30.0%
GCACACAAAAATATCAAAAC+CGG - chr5_1:64618575-64618594 Msa0743990:five_prime_UTR 30.0%
!! TGCTTTTTGTTCCATCAATC+GGG - chr5_1:64616453-64616472 Msa0743990:three_prime_UTR 35.0%
CATGGATTTCAATGCGAAAT+GGG + chr5_1:64616487-64616506 None:intergenic 35.0%
!! TCATCGTCTTGTTGTTGAAT+GGG + chr5_1:64616554-64616573 None:intergenic 35.0%
ACCGAATAGTATTTGCCAAT+TGG - chr5_1:64616813-64616832 Msa0743990:three_prime_UTR 35.0%
GTGGTAAGACTATATCAGAT+AGG - chr5_1:64617059-64617078 Msa0743990:CDS 35.0%
GATAATACTAGCAAGAGATG+GGG - chr5_1:64617091-64617110 Msa0743990:CDS 35.0%
ACCTATTGTAGAAAAGATGG+TGG - chr5_1:64617121-64617140 Msa0743990:intron 35.0%
! TCCACCATCTTTTCTACAAT+AGG + chr5_1:64617125-64617144 None:intergenic 35.0%
!! GTAGAAAAGATGGTGGAAAA+TGG - chr5_1:64617128-64617147 Msa0743990:intron 35.0%
! AACAATCAAGCCTTATCAGT+GGG + chr5_1:64617286-64617305 None:intergenic 35.0%
!! TGCACTTGTTTGATTTTGCT+CGG - chr5_1:64617439-64617458 Msa0743990:intron 35.0%
TTAAGAAGCAAGTATCTCAC+AGG + chr5_1:64617466-64617485 None:intergenic 35.0%
! TTGTTTCTTCTTAGGATGAC+TGG - chr5_1:64617719-64617738 Msa0743990:intron 35.0%
AGGATGACTGGATAATATGT+AGG - chr5_1:64617731-64617750 Msa0743990:intron 35.0%
!! TAGGCTTTAGATATTGGAAC+TGG - chr5_1:64617750-64617769 Msa0743990:intron 35.0%
AAGGAAGAGAACATCTATCT+TGG - chr5_1:64617823-64617842 Msa0743990:intron 35.0%
!!! TCTTGTTGTTTTGATTGCGA+AGG + chr5_1:64617865-64617884 None:intergenic 35.0%
TTCGCAATCAAAACAACAAG+AGG - chr5_1:64617864-64617883 Msa0743990:intron 35.0%
GAAGCTGATAAGAGAATTAG+TGG - chr5_1:64617931-64617950 Msa0743990:intron 35.0%
AGAATAAAGTGGATAACCTG+AGG - chr5_1:64617965-64617984 Msa0743990:intron 35.0%
GAATAAAGTGGATAACCTGA+GGG - chr5_1:64617966-64617985 Msa0743990:intron 35.0%
TTGATGCATCATTCAAGACA+TGG - chr5_1:64618175-64618194 Msa0743990:intron 35.0%
TGATGCATCATTCAAGACAT+GGG - chr5_1:64618176-64618195 Msa0743990:intron 35.0%
CTGACAATAAGTTTATCACC+TGG - chr5_1:64618217-64618236 Msa0743990:intron 35.0%
!!! TTTTCTGTGTCGATTAGTAG+TGG + chr5_1:64618333-64618352 None:intergenic 35.0%
CTTGTTCAGAATTATCTTCC+AGG - chr5_1:64618430-64618449 Msa0743990:five_prime_UTR 35.0%
TCCAGGCTTATATATTAGCA+TGG - chr5_1:64618447-64618466 Msa0743990:five_prime_UTR 35.0%
CCAGGCTTATATATTAGCAT+GGG - chr5_1:64618448-64618467 Msa0743990:five_prime_UTR 35.0%
! TATTAGCATGGGTTTTCTGA+AGG - chr5_1:64618459-64618478 Msa0743990:five_prime_UTR 35.0%
!! TGCTTTTTGTTCCATCAATC+GGG - chr5_1:64616453-64616472 Msa0743990:three_prime_UTR 35.0%
CATGGATTTCAATGCGAAAT+GGG + chr5_1:64616487-64616506 None:intergenic 35.0%
!! TCATCGTCTTGTTGTTGAAT+GGG + chr5_1:64616554-64616573 None:intergenic 35.0%
ACCGAATAGTATTTGCCAAT+TGG - chr5_1:64616813-64616832 Msa0743990:three_prime_UTR 35.0%
GTGGTAAGACTATATCAGAT+AGG - chr5_1:64617059-64617078 Msa0743990:CDS 35.0%
GATAATACTAGCAAGAGATG+GGG - chr5_1:64617091-64617110 Msa0743990:CDS 35.0%
ACCTATTGTAGAAAAGATGG+TGG - chr5_1:64617121-64617140 Msa0743990:intron 35.0%
! TCCACCATCTTTTCTACAAT+AGG + chr5_1:64617125-64617144 None:intergenic 35.0%
!! GTAGAAAAGATGGTGGAAAA+TGG - chr5_1:64617128-64617147 Msa0743990:intron 35.0%
! AACAATCAAGCCTTATCAGT+GGG + chr5_1:64617286-64617305 None:intergenic 35.0%
!! TGCACTTGTTTGATTTTGCT+CGG - chr5_1:64617439-64617458 Msa0743990:intron 35.0%
TTAAGAAGCAAGTATCTCAC+AGG + chr5_1:64617466-64617485 None:intergenic 35.0%
! TTGTTTCTTCTTAGGATGAC+TGG - chr5_1:64617719-64617738 Msa0743990:intron 35.0%
AGGATGACTGGATAATATGT+AGG - chr5_1:64617731-64617750 Msa0743990:intron 35.0%
!! TAGGCTTTAGATATTGGAAC+TGG - chr5_1:64617750-64617769 Msa0743990:intron 35.0%
AAGGAAGAGAACATCTATCT+TGG - chr5_1:64617823-64617842 Msa0743990:intron 35.0%
!!! TCTTGTTGTTTTGATTGCGA+AGG + chr5_1:64617865-64617884 None:intergenic 35.0%
TTCGCAATCAAAACAACAAG+AGG - chr5_1:64617864-64617883 Msa0743990:intron 35.0%
GAAGCTGATAAGAGAATTAG+TGG - chr5_1:64617931-64617950 Msa0743990:intron 35.0%
AGAATAAAGTGGATAACCTG+AGG - chr5_1:64617965-64617984 Msa0743990:intron 35.0%
GAATAAAGTGGATAACCTGA+GGG - chr5_1:64617966-64617985 Msa0743990:intron 35.0%
TTGATGCATCATTCAAGACA+TGG - chr5_1:64618175-64618194 Msa0743990:intron 35.0%
TGATGCATCATTCAAGACAT+GGG - chr5_1:64618176-64618195 Msa0743990:intron 35.0%
CTGACAATAAGTTTATCACC+TGG - chr5_1:64618217-64618236 Msa0743990:intron 35.0%
!!! TTTTCTGTGTCGATTAGTAG+TGG + chr5_1:64618333-64618352 None:intergenic 35.0%
CTTGTTCAGAATTATCTTCC+AGG - chr5_1:64618430-64618449 Msa0743990:five_prime_UTR 35.0%
TCCAGGCTTATATATTAGCA+TGG - chr5_1:64618447-64618466 Msa0743990:five_prime_UTR 35.0%
CCAGGCTTATATATTAGCAT+GGG - chr5_1:64618448-64618467 Msa0743990:five_prime_UTR 35.0%
! TATTAGCATGGGTTTTCTGA+AGG - chr5_1:64618459-64618478 Msa0743990:five_prime_UTR 35.0%
!!! AAGGGTACTTTTGTCGTTCT+CGG + chr5_1:64616334-64616353 None:intergenic 40.0%
ATATTGAACCACCCACTCAA+GGG + chr5_1:64616352-64616371 None:intergenic 40.0%
AATATTGAACCACCCACTCA+AGG + chr5_1:64616353-64616372 None:intergenic 40.0%
!!! CCTAATTTTAGGGTTTGGGA+GGG + chr5_1:64616385-64616404 None:intergenic 40.0%
CCTCCCAAACCCTAAAATTA+GGG - chr5_1:64616383-64616402 Msa0743990:three_prime_UTR 40.0%
CCATGGATTTCAATGCGAAA+TGG + chr5_1:64616488-64616507 None:intergenic 40.0%
CCATTTCGCATTGAAATCCA+TGG - chr5_1:64616485-64616504 Msa0743990:three_prime_UTR 40.0%
! TTGTTGTTGAATGGGAGAAG+TGG + chr5_1:64616546-64616565 None:intergenic 40.0%
!! GTCATCGTCTTGTTGTTGAA+TGG + chr5_1:64616555-64616574 None:intergenic 40.0%
AGAACTTAACACATTCGGCA+AGG + chr5_1:64616939-64616958 None:intergenic 40.0%
GGCACCTATTGTAGAAAAGA+TGG - chr5_1:64617118-64617137 Msa0743990:intron 40.0%
! ACAATCAAGCCTTATCAGTG+GGG + chr5_1:64617285-64617304 None:intergenic 40.0%
! CAACAATCAAGCCTTATCAG+TGG + chr5_1:64617287-64617306 None:intergenic 40.0%
! TTGTTGGTTGTAGACACTGA+TGG - chr5_1:64617594-64617613 Msa0743990:intron 40.0%
TGGATTTGTGATTCCGAGTT+TGG - chr5_1:64617614-64617633 Msa0743990:intron 40.0%
GGATTTGTGATTCCGAGTTT+GGG - chr5_1:64617615-64617634 Msa0743990:intron 40.0%
GAGTCTTCAATTCCCAAACT+CGG + chr5_1:64617630-64617649 None:intergenic 40.0%
ATCTCCAAATTCTGCTGCAA+AGG - chr5_1:64617683-64617702 Msa0743990:intron 40.0%
!!! TGTTGTTTTGATTGCGAAGG+AGG + chr5_1:64617862-64617881 None:intergenic 40.0%
AAGAGGTGATTCCATCAAAC+CGG - chr5_1:64617881-64617900 Msa0743990:intron 40.0%
GATAAGAGAATTAGTGGGAC+AGG - chr5_1:64617937-64617956 Msa0743990:intron 40.0%
! ATTCAAGACATGGGTTACAG+AGG - chr5_1:64618185-64618204 Msa0743990:intron 40.0%
TCAAGCCCATAATTTCCACA+AGG + chr5_1:64618295-64618314 None:intergenic 40.0%
AGAAGCGAAGCAAATGAAAC+AGG - chr5_1:64618360-64618379 Msa0743990:CDS 40.0%
TGAAACAGGAAGATACAGAG+TGG - chr5_1:64618374-64618393 Msa0743990:CDS 40.0%
CCCATGCTAATATATAAGCC+TGG + chr5_1:64618451-64618470 None:intergenic 40.0%
!!! AAGGGTACTTTTGTCGTTCT+CGG + chr5_1:64616334-64616353 None:intergenic 40.0%
ATATTGAACCACCCACTCAA+GGG + chr5_1:64616352-64616371 None:intergenic 40.0%
AATATTGAACCACCCACTCA+AGG + chr5_1:64616353-64616372 None:intergenic 40.0%
!!! CCTAATTTTAGGGTTTGGGA+GGG + chr5_1:64616385-64616404 None:intergenic 40.0%
CCTCCCAAACCCTAAAATTA+GGG - chr5_1:64616383-64616402 Msa0743990:three_prime_UTR 40.0%
CCATGGATTTCAATGCGAAA+TGG + chr5_1:64616488-64616507 None:intergenic 40.0%
CCATTTCGCATTGAAATCCA+TGG - chr5_1:64616485-64616504 Msa0743990:three_prime_UTR 40.0%
! TTGTTGTTGAATGGGAGAAG+TGG + chr5_1:64616546-64616565 None:intergenic 40.0%
!! GTCATCGTCTTGTTGTTGAA+TGG + chr5_1:64616555-64616574 None:intergenic 40.0%
AGAACTTAACACATTCGGCA+AGG + chr5_1:64616939-64616958 None:intergenic 40.0%
GGCACCTATTGTAGAAAAGA+TGG - chr5_1:64617118-64617137 Msa0743990:intron 40.0%
! ACAATCAAGCCTTATCAGTG+GGG + chr5_1:64617285-64617304 None:intergenic 40.0%
! CAACAATCAAGCCTTATCAG+TGG + chr5_1:64617287-64617306 None:intergenic 40.0%
! TTGTTGGTTGTAGACACTGA+TGG - chr5_1:64617594-64617613 Msa0743990:intron 40.0%
TGGATTTGTGATTCCGAGTT+TGG - chr5_1:64617614-64617633 Msa0743990:intron 40.0%
GGATTTGTGATTCCGAGTTT+GGG - chr5_1:64617615-64617634 Msa0743990:intron 40.0%
GAGTCTTCAATTCCCAAACT+CGG + chr5_1:64617630-64617649 None:intergenic 40.0%
ATCTCCAAATTCTGCTGCAA+AGG - chr5_1:64617683-64617702 Msa0743990:intron 40.0%
!!! TGTTGTTTTGATTGCGAAGG+AGG + chr5_1:64617862-64617881 None:intergenic 40.0%
AAGAGGTGATTCCATCAAAC+CGG - chr5_1:64617881-64617900 Msa0743990:intron 40.0%
GATAAGAGAATTAGTGGGAC+AGG - chr5_1:64617937-64617956 Msa0743990:intron 40.0%
! ATTCAAGACATGGGTTACAG+AGG - chr5_1:64618185-64618204 Msa0743990:intron 40.0%
TCAAGCCCATAATTTCCACA+AGG + chr5_1:64618295-64618314 None:intergenic 40.0%
AGAAGCGAAGCAAATGAAAC+AGG - chr5_1:64618360-64618379 Msa0743990:CDS 40.0%
TGAAACAGGAAGATACAGAG+TGG - chr5_1:64618374-64618393 Msa0743990:CDS 40.0%
CCCATGCTAATATATAAGCC+TGG + chr5_1:64618451-64618470 None:intergenic 40.0%
!! ACGACAAAAGTACCCTTGAG+TGG - chr5_1:64616337-64616356 Msa0743990:three_prime_UTR 45.0%
!! CGACAAAAGTACCCTTGAGT+GGG - chr5_1:64616338-64616357 Msa0743990:three_prime_UTR 45.0%
CCCTCCCAAACCCTAAAATT+AGG - chr5_1:64616382-64616401 Msa0743990:three_prime_UTR 45.0%
!!! CCCTAATTTTAGGGTTTGGG+AGG + chr5_1:64616386-64616405 None:intergenic 45.0%
!! GAAGTGGATTGCAGTGAAGA+GGG + chr5_1:64616530-64616549 None:intergenic 45.0%
!! AGAAGTGGATTGCAGTGAAG+AGG + chr5_1:64616531-64616550 None:intergenic 45.0%
AACAACAAGACGATGACGAG+TGG - chr5_1:64616558-64616577 Msa0743990:three_prime_UTR 45.0%
ACAACAAGACGATGACGAGT+GGG - chr5_1:64616559-64616578 Msa0743990:three_prime_UTR 45.0%
TATTAAGCCTAGCGGAGATG+AGG - chr5_1:64617020-64617039 Msa0743990:CDS 45.0%
AGGATGTTACGTTGGATGTG+TGG - chr5_1:64617040-64617059 Msa0743990:CDS 45.0%
AATACTAGCAAGAGATGGGG+TGG - chr5_1:64617094-64617113 Msa0743990:CDS 45.0%
!! AGATGGTGGAAAATGGGCTT+AGG - chr5_1:64617135-64617154 Msa0743990:intron 45.0%
! GAAAATGGGCTTAGGTGGTT+TGG - chr5_1:64617143-64617162 Msa0743990:intron 45.0%
CTGACCTTTGCAGCAGAATT+TGG + chr5_1:64617690-64617709 None:intergenic 45.0%
AACATCTATCTTGGCCCACA+CGG - chr5_1:64617832-64617851 Msa0743990:intron 45.0%
AGAGAATTAGTGGGACAGGT+AGG - chr5_1:64617941-64617960 Msa0743990:intron 45.0%
GAGAATTAGTGGGACAGGTA+GGG - chr5_1:64617942-64617961 Msa0743990:intron 45.0%
GACAGGTAGGGAGAATAAAG+TGG - chr5_1:64617954-64617973 Msa0743990:intron 45.0%
ATCTAACCAGTCCTTAGGAG+AGG + chr5_1:64618037-64618056 None:intergenic 45.0%
TGTGGATCTAACCAGTCCTT+AGG + chr5_1:64618042-64618061 None:intergenic 45.0%
AACTCAGCTTCATGGCAATG+TGG + chr5_1:64618060-64618079 None:intergenic 45.0%
TCCTCTCAAACTCAGCTTCA+TGG + chr5_1:64618068-64618087 None:intergenic 45.0%
ATGAAGCTGAGTTTGAGAGG+AGG - chr5_1:64618067-64618086 Msa0743990:intron 45.0%
!! ACGACAAAAGTACCCTTGAG+TGG - chr5_1:64616337-64616356 Msa0743990:three_prime_UTR 45.0%
!! CGACAAAAGTACCCTTGAGT+GGG - chr5_1:64616338-64616357 Msa0743990:three_prime_UTR 45.0%
CCCTCCCAAACCCTAAAATT+AGG - chr5_1:64616382-64616401 Msa0743990:three_prime_UTR 45.0%
!!! CCCTAATTTTAGGGTTTGGG+AGG + chr5_1:64616386-64616405 None:intergenic 45.0%
!! GAAGTGGATTGCAGTGAAGA+GGG + chr5_1:64616530-64616549 None:intergenic 45.0%
!! AGAAGTGGATTGCAGTGAAG+AGG + chr5_1:64616531-64616550 None:intergenic 45.0%
AACAACAAGACGATGACGAG+TGG - chr5_1:64616558-64616577 Msa0743990:three_prime_UTR 45.0%
ACAACAAGACGATGACGAGT+GGG - chr5_1:64616559-64616578 Msa0743990:three_prime_UTR 45.0%
TATTAAGCCTAGCGGAGATG+AGG - chr5_1:64617020-64617039 Msa0743990:CDS 45.0%
AGGATGTTACGTTGGATGTG+TGG - chr5_1:64617040-64617059 Msa0743990:CDS 45.0%
AATACTAGCAAGAGATGGGG+TGG - chr5_1:64617094-64617113 Msa0743990:CDS 45.0%
!! AGATGGTGGAAAATGGGCTT+AGG - chr5_1:64617135-64617154 Msa0743990:intron 45.0%
! GAAAATGGGCTTAGGTGGTT+TGG - chr5_1:64617143-64617162 Msa0743990:intron 45.0%
CTGACCTTTGCAGCAGAATT+TGG + chr5_1:64617690-64617709 None:intergenic 45.0%
AACATCTATCTTGGCCCACA+CGG - chr5_1:64617832-64617851 Msa0743990:intron 45.0%
AGAGAATTAGTGGGACAGGT+AGG - chr5_1:64617941-64617960 Msa0743990:intron 45.0%
GAGAATTAGTGGGACAGGTA+GGG - chr5_1:64617942-64617961 Msa0743990:intron 45.0%
GACAGGTAGGGAGAATAAAG+TGG - chr5_1:64617954-64617973 Msa0743990:intron 45.0%
ATCTAACCAGTCCTTAGGAG+AGG + chr5_1:64618037-64618056 None:intergenic 45.0%
TGTGGATCTAACCAGTCCTT+AGG + chr5_1:64618042-64618061 None:intergenic 45.0%
AACTCAGCTTCATGGCAATG+TGG + chr5_1:64618060-64618079 None:intergenic 45.0%
TCCTCTCAAACTCAGCTTCA+TGG + chr5_1:64618068-64618087 None:intergenic 45.0%
ATGAAGCTGAGTTTGAGAGG+AGG - chr5_1:64618067-64618086 Msa0743990:intron 45.0%
!! CAAAAGTACCCTTGAGTGGG+TGG - chr5_1:64616341-64616360 Msa0743990:three_prime_UTR 50.0%
CCATGGTAAAGCGATGACCA+TGG + chr5_1:64616505-64616524 None:intergenic 50.0%
CCATGGTCATCGCTTTACCA+TGG - chr5_1:64616502-64616521 Msa0743990:three_prime_UTR 50.0%
CAACAAGACGATGACGAGTG+GGG - chr5_1:64616560-64616579 Msa0743990:three_prime_UTR 50.0%
GTAACATCCTCATCTCCGCT+AGG + chr5_1:64617030-64617049 None:intergenic 50.0%
CGGAGATGAGGATGTTACGT+TGG - chr5_1:64617032-64617051 Msa0743990:CDS 50.0%
! TGGTGGAAAATGGGCTTAGG+TGG - chr5_1:64617138-64617157 Msa0743990:intron 50.0%
! TCAAGCCTTATCAGTGGGGT+CGG + chr5_1:64617281-64617300 None:intergenic 50.0%
TTCCATCAAACCGGAAGCAG+CGG - chr5_1:64617890-64617909 Msa0743990:intron 50.0%
TTTGCTTGAACCGCTGCTTC+CGG + chr5_1:64617903-64617922 None:intergenic 50.0%
GATAACCTGAGGGAGCTTGT+AGG - chr5_1:64617976-64617995 Msa0743990:intron 50.0%
!! GGAGAAAGCAAGTGTTGGCA+TGG - chr5_1:64618002-64618021 Msa0743990:intron 50.0%
!! AGCAAGTGTTGGCATGGCAA+AGG - chr5_1:64618008-64618027 Msa0743990:intron 50.0%
!! GCAAGTGTTGGCATGGCAAA+GGG - chr5_1:64618009-64618028 Msa0743990:intron 50.0%
GCCATGAAGCTGAGTTTGAG+AGG - chr5_1:64618064-64618083 Msa0743990:intron 50.0%
!! CAAAAGTACCCTTGAGTGGG+TGG - chr5_1:64616341-64616360 Msa0743990:three_prime_UTR 50.0%
CCATGGTAAAGCGATGACCA+TGG + chr5_1:64616505-64616524 None:intergenic 50.0%
CCATGGTCATCGCTTTACCA+TGG - chr5_1:64616502-64616521 Msa0743990:three_prime_UTR 50.0%
CAACAAGACGATGACGAGTG+GGG - chr5_1:64616560-64616579 Msa0743990:three_prime_UTR 50.0%
GTAACATCCTCATCTCCGCT+AGG + chr5_1:64617030-64617049 None:intergenic 50.0%
CGGAGATGAGGATGTTACGT+TGG - chr5_1:64617032-64617051 Msa0743990:CDS 50.0%
! TGGTGGAAAATGGGCTTAGG+TGG - chr5_1:64617138-64617157 Msa0743990:intron 50.0%
! TCAAGCCTTATCAGTGGGGT+CGG + chr5_1:64617281-64617300 None:intergenic 50.0%
TTCCATCAAACCGGAAGCAG+CGG - chr5_1:64617890-64617909 Msa0743990:intron 50.0%
TTTGCTTGAACCGCTGCTTC+CGG + chr5_1:64617903-64617922 None:intergenic 50.0%
GATAACCTGAGGGAGCTTGT+AGG - chr5_1:64617976-64617995 Msa0743990:intron 50.0%
!! GGAGAAAGCAAGTGTTGGCA+TGG - chr5_1:64618002-64618021 Msa0743990:intron 50.0%
!! AGCAAGTGTTGGCATGGCAA+AGG - chr5_1:64618008-64618027 Msa0743990:intron 50.0%
!! GCAAGTGTTGGCATGGCAAA+GGG - chr5_1:64618009-64618028 Msa0743990:intron 50.0%
GCCATGAAGCTGAGTTTGAG+AGG - chr5_1:64618064-64618083 Msa0743990:intron 50.0%
GGGCGATAAAGCCCGATTGA+TGG + chr5_1:64616467-64616486 None:intergenic 55.0%
TTGCAGTGAAGAGGGCTCCA+TGG + chr5_1:64616522-64616541 None:intergenic 55.0%
ACTAGCAAGAGATGGGGTGG+TGG - chr5_1:64617097-64617116 Msa0743990:CDS 55.0%
TTATCAGTGGGGTCGGCACA+TGG + chr5_1:64617274-64617293 None:intergenic 55.0%
! ATGTGCCGACCCCACTGATA+AGG - chr5_1:64617273-64617292 Msa0743990:CDS 55.0%
! AACCGCTGCTTCCGGTTTGA+TGG + chr5_1:64617895-64617914 None:intergenic 55.0%
AACCTGAGGGAGCTTGTAGG+TGG - chr5_1:64617979-64617998 Msa0743990:intron 55.0%
ACCTGAGGGAGCTTGTAGGT+GGG - chr5_1:64617980-64617999 Msa0743990:intron 55.0%
GGTGGGGAGAAAGCAAGTGT+TGG - chr5_1:64617997-64618016 Msa0743990:intron 55.0%
GGCAAAGGGATCCTCTCCTA+AGG - chr5_1:64618023-64618042 Msa0743990:intron 55.0%
AGGGATCCTCTCCTAAGGAC+TGG - chr5_1:64618028-64618047 Msa0743990:intron 55.0%
GGGCGATAAAGCCCGATTGA+TGG + chr5_1:64616467-64616486 None:intergenic 55.0%
TTGCAGTGAAGAGGGCTCCA+TGG + chr5_1:64616522-64616541 None:intergenic 55.0%
ACTAGCAAGAGATGGGGTGG+TGG - chr5_1:64617097-64617116 Msa0743990:CDS 55.0%
TTATCAGTGGGGTCGGCACA+TGG + chr5_1:64617274-64617293 None:intergenic 55.0%
! ATGTGCCGACCCCACTGATA+AGG - chr5_1:64617273-64617292 Msa0743990:CDS 55.0%
! AACCGCTGCTTCCGGTTTGA+TGG + chr5_1:64617895-64617914 None:intergenic 55.0%
AACCTGAGGGAGCTTGTAGG+TGG - chr5_1:64617979-64617998 Msa0743990:intron 55.0%
ACCTGAGGGAGCTTGTAGGT+GGG - chr5_1:64617980-64617999 Msa0743990:intron 55.0%
GGTGGGGAGAAAGCAAGTGT+TGG - chr5_1:64617997-64618016 Msa0743990:intron 55.0%
GGCAAAGGGATCCTCTCCTA+AGG - chr5_1:64618023-64618042 Msa0743990:intron 55.0%
AGGGATCCTCTCCTAAGGAC+TGG - chr5_1:64618028-64618047 Msa0743990:intron 55.0%
CCTGAGGGAGCTTGTAGGTG+GGG - chr5_1:64617981-64618000 Msa0743990:intron 60.0%
CCTGAGGGAGCTTGTAGGTG+GGG - chr5_1:64617981-64618000 Msa0743990:intron 60.0%
CCCCACCTACAAGCTCCCTC+AGG + chr5_1:64617984-64618003 None:intergenic 65.0%
CCCCACCTACAAGCTCCCTC+AGG + chr5_1:64617984-64618003 None:intergenic 65.0%
!! GCGAAGGAGGCGCTCCGTGT+GGG + chr5_1:64617849-64617868 None:intergenic 70.0%
!! TGCGAAGGAGGCGCTCCGTG+TGG + chr5_1:64617850-64617869 None:intergenic 70.0%
!! GCGAAGGAGGCGCTCCGTGT+GGG + chr5_1:64617849-64617868 None:intergenic 70.0%
!! TGCGAAGGAGGCGCTCCGTG+TGG + chr5_1:64617850-64617869 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 64616324 64618612 64616324 ID=Msa0743990;Name=Msa0743990
chr5_1 mRNA 64616324 64618612 64616324 ID=Msa0743990-mRNA-1;Parent=Msa0743990;Name=Msa0743990-mRNA-1;_AED=0.01;_eAED=0.01;_QI=197|1|1|1|1|1|3|520|144
chr5_1 exon 64616324 64617119 64616324 ID=Msa0743990-mRNA-1:exon:19115;Parent=Msa0743990-mRNA-1
chr5_1 exon 64617232 64617329 64617232 ID=Msa0743990-mRNA-1:exon:19114;Parent=Msa0743990-mRNA-1
chr5_1 exon 64618355 64618612 64618355 ID=Msa0743990-mRNA-1:exon:19113;Parent=Msa0743990-mRNA-1
chr5_1 five_prime_UTR 64618416 64618612 64618416 ID=Msa0743990-mRNA-1:five_prime_utr;Parent=Msa0743990-mRNA-1
chr5_1 CDS 64618355 64618415 64618355 ID=Msa0743990-mRNA-1:cds;Parent=Msa0743990-mRNA-1
chr5_1 CDS 64617232 64617329 64617232 ID=Msa0743990-mRNA-1:cds;Parent=Msa0743990-mRNA-1
chr5_1 CDS 64616844 64617119 64616844 ID=Msa0743990-mRNA-1:cds;Parent=Msa0743990-mRNA-1
chr5_1 three_prime_UTR 64616324 64616843 64616324 ID=Msa0743990-mRNA-1:three_prime_utr;Parent=Msa0743990-mRNA-1
Gene Sequence

>Msa0743990

ATGGAGCCCTCTTCACTGCAATCCACTTCTCCCATTCAACAACAAGACGATGACGAGTGGGACACTGATGGATTTGTGATTCCGAGTTTGGGAATTGAAGACTCTGATCAAAGTAAAAACAATGCTGCAAGCATAGAATCTCCAAATTCTGCTGCAAAGAATAAGAAGGAAGAGAACATCTATCTTGGCCCACACGGAGCGCCTCCTTCGCAATCAAAACAACAAGAGGTGATTCCATCAAACCGGAAGCAGCGGTTCAAGCAAAAGCTGAAAGAAGCTGATAAGAGAATTAGTGGGACAGGTAGGGAGAATAAAGTGGATAACCTGAGGGAGCTTGTAGGTGGGGAGAAAGCAAGTGTTGGCATGGCAAAGGGATCCTCTCCTAAGGACTGGTTAGATCCACATTGCCATGAAGCTGAGTTTGAGAGGAGGTGA
Protein sequence

>Msa0743990

MEPSSLQSTSPIQQQDDDEWDTDGFVIPSLGIEDSDQSKNNAASIESPNSAAKNKKEENIYLGPHGAPPSQSKQQEVIPSNRKQRFKQKLKEADKRISGTGRENKVDNLRELVGGEKASVGMAKGSSPKDWLDPHCHEAEFERR*