AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0419520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419520 MtrunA17_Chr3g0117831 100.000 73 0 0 1 73 1 73 3.85e-44 136
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0419520 AT1G64750.2 76.712 73 16 1 1 72 1 73 3.37e-11 53.5
Msa0419520 AT1G64750.1 76.712 73 16 1 1 72 1 73 3.37e-11 53.5

Find 41 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTCTGTTTCATTTATATT+TGG 0.190193 3_2:+67624235 Msa0419520:three_prime_UTR
TTTCATTTATATTTGGTATT+GGG 0.244519 3_2:+67624242 Msa0419520:three_prime_UTR
GTTTCATTTATATTTGGTAT+TGG 0.268290 3_2:+67624241 Msa0419520:three_prime_UTR
CTCAACAATGGGAGGATGAT+TGG 0.329365 3_2:+67623856 Msa0419520:CDS
TTGGCATCTAGCTTTATGTT+TGG 0.368291 3_2:+67624196 Msa0419520:three_prime_UTR
TGTGATTCTATATGATTAGT+TGG 0.393123 3_2:+67624177 Msa0419520:three_prime_UTR
GCAAAGTAATTACCCGGTAT+TGG 0.396702 3_2:-67622573 None:intergenic
ATTTATATTTGGTATTGGGT+TGG 0.401822 3_2:+67624246 Msa0419520:three_prime_UTR
CGATAAACCTTGGAGTGGTT+AGG 0.422444 3_2:-67622536 None:intergenic
TAAACTATGCCTTGTTATGA+AGG 0.436496 3_2:+67624056 Msa0419520:three_prime_UTR
TCAACAATGGGAGGATGATT+GGG 0.443446 3_2:+67623857 Msa0419520:CDS
TCATTCAATTCAACCAATAC+CGG 0.446119 3_2:+67622560 Msa0419520:five_prime_UTR
ATTTCTCTGTTCAGCTGAGA+AGG 0.461195 3_2:+67623901 Msa0419520:CDS
GCTTGTAAAGGAAGTAAGAA+AGG 0.491583 3_2:-67622479 None:intergenic
TGTTCAGCTGAGAAGGGAGT+TGG 0.494913 3_2:+67623908 Msa0419520:CDS
GAAAGAAGTAACTCAACAAT+GGG 0.498445 3_2:+67623845 Msa0419520:CDS
GAAGAGTTTGAAATCAATGA+AGG 0.502774 3_2:+67622819 Msa0419520:CDS
ATTGAATGAACGATAAACCT+TGG 0.515059 3_2:-67622546 None:intergenic
AGAATCTTGTGTGCTTGTAA+AGG 0.524189 3_2:-67622491 None:intergenic
GAGTGGGATGACATGGAGGA+AGG 0.532354 3_2:+67623822 Msa0419520:intron
TTTCTCTGTTCAGCTGAGAA+GGG 0.558420 3_2:+67623902 Msa0419520:CDS
AGCCTTTGCTTCAGTCGCCA+TGG 0.560336 3_2:-67622748 None:intergenic
GGTATCTGAGACTTTGAGCT+CGG 0.562408 3_2:+67624008 Msa0419520:three_prime_UTR
CATTCAATTCAACCAATACC+GGG 0.563039 3_2:+67622561 Msa0419520:five_prime_UTR
GGAAAGAAGTAACTCAACAA+TGG 0.565472 3_2:+67623844 Msa0419520:CDS
ATCCATGGCGACTGAAGCAA+AGG 0.576258 3_2:+67622746 Msa0419520:exon
ACTTGCAGAGTGGGATGACA+TGG 0.578383 3_2:+67623815 Msa0419520:intron
TGTTACTAAAACAGCACACA+AGG 0.588638 3_2:+67624082 Msa0419520:three_prime_UTR
AGTGGGATGACATGGAGGAA+GGG 0.591985 3_2:+67623823 Msa0419520:CDS
TGCAGATTCAGATTTATCCA+TGG 0.592856 3_2:+67622731 Msa0419520:intron
ATAAGAATTAAACCACCTGC+TGG 0.593819 3_2:+67623943 Msa0419520:exon
TGTGTAATGAGTTACAACTT+AGG 0.596314 3_2:+67623987 Msa0419520:three_prime_UTR
CATATAGAATCACAGAACTC+AGG 0.596950 3_2:-67624168 None:intergenic
TGAAGCAAAGGCTGTGACCG+AGG 0.600680 3_2:+67622758 Msa0419520:CDS
GTAACATTTCCTTCATAACA+AGG 0.614099 3_2:-67624065 None:intergenic
TAGATCGATCTTGACATCCT+CGG 0.618819 3_2:-67622775 None:intergenic
AGAAGTAACTCAACAATGGG+AGG 0.631574 3_2:+67623848 Msa0419520:CDS
AGCGAAACCTAACCACTCCA+AGG 0.652837 3_2:+67622529 Msa0419520:five_prime_UTR
ATGAACGATAAACCTTGGAG+TGG 0.655424 3_2:-67622541 None:intergenic
TGCAGAGTGGGATGACATGG+AGG 0.657206 3_2:+67623818 Msa0419520:intron
AGTACTCAATAACTTCTACA+CGG 0.692613 3_2:-67624136 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTCTGTTTCATTTATATT+TGG + chr3_2:67624235-67624254 Msa0419520:three_prime_UTR 15.0%
!! TTTCATTTATATTTGGTATT+GGG + chr3_2:67624242-67624261 Msa0419520:three_prime_UTR 15.0%
!! TATTCTGTTTCATTTATATT+TGG + chr3_2:67624235-67624254 Msa0419520:three_prime_UTR 15.0%
!! TTTCATTTATATTTGGTATT+GGG + chr3_2:67624242-67624261 Msa0419520:three_prime_UTR 15.0%
!!! AAAACCCTAATTTTGATAAA+GGG - chr3_2:67622663-67622682 None:intergenic 20.0%
!!! AAAAACCCTAATTTTGATAA+AGG - chr3_2:67622664-67622683 None:intergenic 20.0%
!! AAGTTTCAAATTACATGATT+GGG - chr3_2:67623301-67623320 None:intergenic 20.0%
!! TAAGTTTCAAATTACATGAT+TGG - chr3_2:67623302-67623321 None:intergenic 20.0%
!! GTTTCATTTATATTTGGTAT+TGG + chr3_2:67624241-67624260 Msa0419520:three_prime_UTR 20.0%
!!! AAAACCCTAATTTTGATAAA+GGG - chr3_2:67622663-67622682 None:intergenic 20.0%
!!! AAAAACCCTAATTTTGATAA+AGG - chr3_2:67622664-67622683 None:intergenic 20.0%
!! AAGTTTCAAATTACATGATT+GGG - chr3_2:67623301-67623320 None:intergenic 20.0%
!! TAAGTTTCAAATTACATGAT+TGG - chr3_2:67623302-67623321 None:intergenic 20.0%
!! GTTTCATTTATATTTGGTAT+TGG + chr3_2:67624241-67624260 Msa0419520:three_prime_UTR 20.0%
!!! AATTTTGATAAAGGGGAATA+GGG - chr3_2:67622655-67622674 None:intergenic 25.0%
!!! TAATTTTGATAAAGGGGAAT+AGG - chr3_2:67622656-67622675 None:intergenic 25.0%
! TATTCCCCTTTATCAAAATT+AGG + chr3_2:67622655-67622674 Msa0419520:intron 25.0%
! ATTCCCCTTTATCAAAATTA+GGG + chr3_2:67622656-67622675 Msa0419520:intron 25.0%
!!! AAACCCTAATTTTGATAAAG+GGG - chr3_2:67622662-67622681 None:intergenic 25.0%
!! ATTATCTTTGCTTCTGTTTT+AGG + chr3_2:67622876-67622895 Msa0419520:intron 25.0%
! AACATCACTGAAAATTTCTT+AGG - chr3_2:67622922-67622941 None:intergenic 25.0%
! GTTTGGCATTCAATTAATTA+CGG + chr3_2:67623045-67623064 Msa0419520:intron 25.0%
! TTTGGCATTCAATTAATTAC+GGG + chr3_2:67623046-67623065 Msa0419520:intron 25.0%
! CTTATACATAAGCACTTATT+TGG + chr3_2:67623222-67623241 Msa0419520:intron 25.0%
! ATTTCATACACGAAATAAAG+TGG - chr3_2:67623342-67623361 None:intergenic 25.0%
!!! TGAATCTCATTTAGTTTGAT+TGG + chr3_2:67623657-67623676 Msa0419520:intron 25.0%
! ATTGGCATTTGTATGTTAAT+TGG + chr3_2:67623675-67623694 Msa0419520:intron 25.0%
! TGTGATTCTATATGATTAGT+TGG + chr3_2:67624177-67624196 Msa0419520:three_prime_UTR 25.0%
!! ATTTATATTTGGTATTGGGT+TGG + chr3_2:67624246-67624265 Msa0419520:three_prime_UTR 25.0%
!!! AATTTTGATAAAGGGGAATA+GGG - chr3_2:67622655-67622674 None:intergenic 25.0%
!!! TAATTTTGATAAAGGGGAAT+AGG - chr3_2:67622656-67622675 None:intergenic 25.0%
! TATTCCCCTTTATCAAAATT+AGG + chr3_2:67622655-67622674 Msa0419520:intron 25.0%
! ATTCCCCTTTATCAAAATTA+GGG + chr3_2:67622656-67622675 Msa0419520:intron 25.0%
!!! AAACCCTAATTTTGATAAAG+GGG - chr3_2:67622662-67622681 None:intergenic 25.0%
!! ATTATCTTTGCTTCTGTTTT+AGG + chr3_2:67622876-67622895 Msa0419520:intron 25.0%
! AACATCACTGAAAATTTCTT+AGG - chr3_2:67622922-67622941 None:intergenic 25.0%
! GTTTGGCATTCAATTAATTA+CGG + chr3_2:67623045-67623064 Msa0419520:intron 25.0%
! TTTGGCATTCAATTAATTAC+GGG + chr3_2:67623046-67623065 Msa0419520:intron 25.0%
! CTTATACATAAGCACTTATT+TGG + chr3_2:67623222-67623241 Msa0419520:intron 25.0%
! ATTTCATACACGAAATAAAG+TGG - chr3_2:67623342-67623361 None:intergenic 25.0%
!!! TGAATCTCATTTAGTTTGAT+TGG + chr3_2:67623657-67623676 Msa0419520:intron 25.0%
! ATTGGCATTTGTATGTTAAT+TGG + chr3_2:67623675-67623694 Msa0419520:intron 25.0%
! TGTGATTCTATATGATTAGT+TGG + chr3_2:67624177-67624196 Msa0419520:three_prime_UTR 25.0%
!! ATTTATATTTGGTATTGGGT+TGG + chr3_2:67624246-67624265 Msa0419520:three_prime_UTR 25.0%
ATTGAATGAACGATAAACCT+TGG - chr3_2:67622549-67622568 None:intergenic 30.0%
TCATTCAATTCAACCAATAC+CGG + chr3_2:67622560-67622579 Msa0419520:five_prime_UTR 30.0%
AGAACAAATGATTGCAATGA+AGG - chr3_2:67622600-67622619 None:intergenic 30.0%
GCGCATAAATTTCACAAATT+CGG - chr3_2:67622693-67622712 None:intergenic 30.0%
! GAAGAGTTTGAAATCAATGA+AGG + chr3_2:67622819-67622838 Msa0419520:CDS 30.0%
AAGCAAAGATAATTGCATCA+GGG - chr3_2:67622869-67622888 None:intergenic 30.0%
ACAGCACTTATATACTAGAT+AGG - chr3_2:67623089-67623108 None:intergenic 30.0%
! TCTAGTATATAAGTGCTGTT+TGG + chr3_2:67623090-67623109 Msa0419520:intron 30.0%
! TGAACATTTGTTAGACTGTT+TGG + chr3_2:67623125-67623144 Msa0419520:intron 30.0%
! GAACATTTGTTAGACTGTTT+GGG + chr3_2:67623126-67623145 Msa0419520:intron 30.0%
CAAATTACATGATTGGGTTA+TGG - chr3_2:67623295-67623314 None:intergenic 30.0%
GCTGCATCATTTATATAATC+AGG - chr3_2:67623444-67623463 None:intergenic 30.0%
GTTCATGCATAATGAGAAAT+AGG - chr3_2:67623599-67623618 None:intergenic 30.0%
ATTATGCATGAACACTTCTA+GGG + chr3_2:67623606-67623625 Msa0419520:intron 30.0%
TTTCTTGACGACTTGAAATT+AGG + chr3_2:67623717-67623736 Msa0419520:intron 30.0%
GAAAGAAGTAACTCAACAAT+GGG + chr3_2:67623845-67623864 Msa0419520:CDS 30.0%
TGTGTAATGAGTTACAACTT+AGG + chr3_2:67623987-67624006 Msa0419520:three_prime_UTR 30.0%
! TAAACTATGCCTTGTTATGA+AGG + chr3_2:67624056-67624075 Msa0419520:three_prime_UTR 30.0%
GTAACATTTCCTTCATAACA+AGG - chr3_2:67624068-67624087 None:intergenic 30.0%
AGTACTCAATAACTTCTACA+CGG - chr3_2:67624139-67624158 None:intergenic 30.0%
!! TTTTTCTATGAAGAGTGTGT+TGG + chr3_2:67624275-67624294 Msa0419520:three_prime_UTR 30.0%
ATTGAATGAACGATAAACCT+TGG - chr3_2:67622549-67622568 None:intergenic 30.0%
TCATTCAATTCAACCAATAC+CGG + chr3_2:67622560-67622579 Msa0419520:five_prime_UTR 30.0%
AGAACAAATGATTGCAATGA+AGG - chr3_2:67622600-67622619 None:intergenic 30.0%
GCGCATAAATTTCACAAATT+CGG - chr3_2:67622693-67622712 None:intergenic 30.0%
! GAAGAGTTTGAAATCAATGA+AGG + chr3_2:67622819-67622838 Msa0419520:CDS 30.0%
AAGCAAAGATAATTGCATCA+GGG - chr3_2:67622869-67622888 None:intergenic 30.0%
ACAGCACTTATATACTAGAT+AGG - chr3_2:67623089-67623108 None:intergenic 30.0%
! TCTAGTATATAAGTGCTGTT+TGG + chr3_2:67623090-67623109 Msa0419520:intron 30.0%
! TGAACATTTGTTAGACTGTT+TGG + chr3_2:67623125-67623144 Msa0419520:intron 30.0%
! GAACATTTGTTAGACTGTTT+GGG + chr3_2:67623126-67623145 Msa0419520:intron 30.0%
CAAATTACATGATTGGGTTA+TGG - chr3_2:67623295-67623314 None:intergenic 30.0%
GCTGCATCATTTATATAATC+AGG - chr3_2:67623444-67623463 None:intergenic 30.0%
GTTCATGCATAATGAGAAAT+AGG - chr3_2:67623599-67623618 None:intergenic 30.0%
ATTATGCATGAACACTTCTA+GGG + chr3_2:67623606-67623625 Msa0419520:intron 30.0%
TTTCTTGACGACTTGAAATT+AGG + chr3_2:67623717-67623736 Msa0419520:intron 30.0%
GAAAGAAGTAACTCAACAAT+GGG + chr3_2:67623845-67623864 Msa0419520:CDS 30.0%
TGTGTAATGAGTTACAACTT+AGG + chr3_2:67623987-67624006 Msa0419520:three_prime_UTR 30.0%
! TAAACTATGCCTTGTTATGA+AGG + chr3_2:67624056-67624075 Msa0419520:three_prime_UTR 30.0%
GTAACATTTCCTTCATAACA+AGG - chr3_2:67624068-67624087 None:intergenic 30.0%
AGTACTCAATAACTTCTACA+CGG - chr3_2:67624139-67624158 None:intergenic 30.0%
!! TTTTTCTATGAAGAGTGTGT+TGG + chr3_2:67624275-67624294 Msa0419520:three_prime_UTR 30.0%
GCTTGTAAAGGAAGTAAGAA+AGG - chr3_2:67622482-67622501 None:intergenic 35.0%
AGAATCTTGTGTGCTTGTAA+AGG - chr3_2:67622494-67622513 None:intergenic 35.0%
CATTCAATTCAACCAATACC+GGG + chr3_2:67622561-67622580 Msa0419520:five_prime_UTR 35.0%
TTGTGAAATTTATGCGCTGT+TGG + chr3_2:67622696-67622715 Msa0419520:intron 35.0%
TGTGAAATTTATGCGCTGTT+GGG + chr3_2:67622697-67622716 Msa0419520:intron 35.0%
TGCAGATTCAGATTTATCCA+TGG + chr3_2:67622731-67622750 Msa0419520:intron 35.0%
TAATTGCATCAGGGAAGAAA+CGG - chr3_2:67622860-67622879 None:intergenic 35.0%
GAAGCAAAGATAATTGCATC+AGG - chr3_2:67622870-67622889 None:intergenic 35.0%
!! TATTCATTAGTTTGCTTCCG+TGG + chr3_2:67622965-67622984 Msa0419520:intron 35.0%
ATCCTAATTCGTTTCTTCCA+CGG - chr3_2:67622985-67623004 None:intergenic 35.0%
TTACATGATTGGGTTATGGT+TGG - chr3_2:67623291-67623310 None:intergenic 35.0%
ATACACGAAATAAAGTGGTG+AGG - chr3_2:67623337-67623356 None:intergenic 35.0%
CATTATGCATGAACACTTCT+AGG + chr3_2:67623605-67623624 Msa0419520:intron 35.0%
!! ACTTCTAGGGCGAAAATTAT+AGG + chr3_2:67623619-67623638 Msa0419520:intron 35.0%
TTCAAGTCGTCAAGAAAAGT+TGG - chr3_2:67623714-67623733 None:intergenic 35.0%
! GACTTGAAATTAGGAGGTTT+TGG + chr3_2:67623726-67623745 Msa0419520:intron 35.0%
ACATTAGATTGTGAGTGCAA+TGG - chr3_2:67623759-67623778 None:intergenic 35.0%
!! TTGTTTTACAACTTGCAGAG+TGG + chr3_2:67623805-67623824 Msa0419520:intron 35.0%
! TGTTTTACAACTTGCAGAGT+GGG + chr3_2:67623806-67623825 Msa0419520:intron 35.0%
GGAAAGAAGTAACTCAACAA+TGG + chr3_2:67623844-67623863 Msa0419520:CDS 35.0%
ATAAGAATTAAACCACCTGC+TGG + chr3_2:67623943-67623962 Msa0419520:exon 35.0%
ATCAAACAAAAATAGCCAGC+AGG - chr3_2:67623961-67623980 None:intergenic 35.0%
TGTTACTAAAACAGCACACA+AGG + chr3_2:67624082-67624101 Msa0419520:three_prime_UTR 35.0%
CATATAGAATCACAGAACTC+AGG - chr3_2:67624171-67624190 None:intergenic 35.0%
!! TTGGCATCTAGCTTTATGTT+TGG + chr3_2:67624196-67624215 Msa0419520:three_prime_UTR 35.0%
GCTTGTAAAGGAAGTAAGAA+AGG - chr3_2:67622482-67622501 None:intergenic 35.0%
AGAATCTTGTGTGCTTGTAA+AGG - chr3_2:67622494-67622513 None:intergenic 35.0%
CATTCAATTCAACCAATACC+GGG + chr3_2:67622561-67622580 Msa0419520:five_prime_UTR 35.0%
TTGTGAAATTTATGCGCTGT+TGG + chr3_2:67622696-67622715 Msa0419520:intron 35.0%
TGTGAAATTTATGCGCTGTT+GGG + chr3_2:67622697-67622716 Msa0419520:intron 35.0%
TGCAGATTCAGATTTATCCA+TGG + chr3_2:67622731-67622750 Msa0419520:intron 35.0%
TAATTGCATCAGGGAAGAAA+CGG - chr3_2:67622860-67622879 None:intergenic 35.0%
GAAGCAAAGATAATTGCATC+AGG - chr3_2:67622870-67622889 None:intergenic 35.0%
!! TATTCATTAGTTTGCTTCCG+TGG + chr3_2:67622965-67622984 Msa0419520:intron 35.0%
ATCCTAATTCGTTTCTTCCA+CGG - chr3_2:67622985-67623004 None:intergenic 35.0%
TTACATGATTGGGTTATGGT+TGG - chr3_2:67623291-67623310 None:intergenic 35.0%
ATACACGAAATAAAGTGGTG+AGG - chr3_2:67623337-67623356 None:intergenic 35.0%
CATTATGCATGAACACTTCT+AGG + chr3_2:67623605-67623624 Msa0419520:intron 35.0%
!! ACTTCTAGGGCGAAAATTAT+AGG + chr3_2:67623619-67623638 Msa0419520:intron 35.0%
TTCAAGTCGTCAAGAAAAGT+TGG - chr3_2:67623714-67623733 None:intergenic 35.0%
! GACTTGAAATTAGGAGGTTT+TGG + chr3_2:67623726-67623745 Msa0419520:intron 35.0%
ACATTAGATTGTGAGTGCAA+TGG - chr3_2:67623759-67623778 None:intergenic 35.0%
!! TTGTTTTACAACTTGCAGAG+TGG + chr3_2:67623805-67623824 Msa0419520:intron 35.0%
! TGTTTTACAACTTGCAGAGT+GGG + chr3_2:67623806-67623825 Msa0419520:intron 35.0%
GGAAAGAAGTAACTCAACAA+TGG + chr3_2:67623844-67623863 Msa0419520:CDS 35.0%
ATAAGAATTAAACCACCTGC+TGG + chr3_2:67623943-67623962 Msa0419520:exon 35.0%
ATCAAACAAAAATAGCCAGC+AGG - chr3_2:67623961-67623980 None:intergenic 35.0%
TGTTACTAAAACAGCACACA+AGG + chr3_2:67624082-67624101 Msa0419520:three_prime_UTR 35.0%
CATATAGAATCACAGAACTC+AGG - chr3_2:67624171-67624190 None:intergenic 35.0%
!! TTGGCATCTAGCTTTATGTT+TGG + chr3_2:67624196-67624215 Msa0419520:three_prime_UTR 35.0%
! TCTGAAGAGCGTGAAAAACT+TGG - chr3_2:67622445-67622464 None:intergenic 40.0%
ATGAACGATAAACCTTGGAG+TGG - chr3_2:67622544-67622563 None:intergenic 40.0%
GCAAAGTAATTACCCGGTAT+TGG - chr3_2:67622576-67622595 None:intergenic 40.0%
GAAGGAGCAAAGTAATTACC+CGG - chr3_2:67622582-67622601 None:intergenic 40.0%
TAGATCGATCTTGACATCCT+CGG - chr3_2:67622778-67622797 None:intergenic 40.0%
AATTGCATCAGGGAAGAAAC+GGG - chr3_2:67622859-67622878 None:intergenic 40.0%
TTCCGTGGAAGAAACGAATT+AGG + chr3_2:67622980-67622999 Msa0419520:intron 40.0%
TGAGCTAGACTTTGTGTGTT+TGG + chr3_2:67623028-67623047 Msa0419520:intron 40.0%
GGCATTCAATTAATTACGGG+AGG + chr3_2:67623049-67623068 Msa0419520:intron 40.0%
AGACTGTTTGGGAGAACTTA+TGG + chr3_2:67623137-67623156 Msa0419520:intron 40.0%
GTCGTCAAGAAAAGTTGGAT+AGG - chr3_2:67623709-67623728 None:intergenic 40.0%
CTTGACGACTTGAAATTAGG+AGG + chr3_2:67623720-67623739 Msa0419520:intron 40.0%
AGAAGTAACTCAACAATGGG+AGG + chr3_2:67623848-67623867 Msa0419520:CDS 40.0%
TCAACAATGGGAGGATGATT+GGG + chr3_2:67623857-67623876 Msa0419520:CDS 40.0%
ATTTCTCTGTTCAGCTGAGA+AGG + chr3_2:67623901-67623920 Msa0419520:CDS 40.0%
TTTCTCTGTTCAGCTGAGAA+GGG + chr3_2:67623902-67623921 Msa0419520:CDS 40.0%
AAACAAAAATAGCCAGCAGG+TGG - chr3_2:67623958-67623977 None:intergenic 40.0%
! TCTGAAGAGCGTGAAAAACT+TGG - chr3_2:67622445-67622464 None:intergenic 40.0%
ATGAACGATAAACCTTGGAG+TGG - chr3_2:67622544-67622563 None:intergenic 40.0%
GCAAAGTAATTACCCGGTAT+TGG - chr3_2:67622576-67622595 None:intergenic 40.0%
GAAGGAGCAAAGTAATTACC+CGG - chr3_2:67622582-67622601 None:intergenic 40.0%
TAGATCGATCTTGACATCCT+CGG - chr3_2:67622778-67622797 None:intergenic 40.0%
AATTGCATCAGGGAAGAAAC+GGG - chr3_2:67622859-67622878 None:intergenic 40.0%
TTCCGTGGAAGAAACGAATT+AGG + chr3_2:67622980-67622999 Msa0419520:intron 40.0%
TGAGCTAGACTTTGTGTGTT+TGG + chr3_2:67623028-67623047 Msa0419520:intron 40.0%
GGCATTCAATTAATTACGGG+AGG + chr3_2:67623049-67623068 Msa0419520:intron 40.0%
AGACTGTTTGGGAGAACTTA+TGG + chr3_2:67623137-67623156 Msa0419520:intron 40.0%
GTCGTCAAGAAAAGTTGGAT+AGG - chr3_2:67623709-67623728 None:intergenic 40.0%
CTTGACGACTTGAAATTAGG+AGG + chr3_2:67623720-67623739 Msa0419520:intron 40.0%
AGAAGTAACTCAACAATGGG+AGG + chr3_2:67623848-67623867 Msa0419520:CDS 40.0%
TCAACAATGGGAGGATGATT+GGG + chr3_2:67623857-67623876 Msa0419520:CDS 40.0%
ATTTCTCTGTTCAGCTGAGA+AGG + chr3_2:67623901-67623920 Msa0419520:CDS 40.0%
TTTCTCTGTTCAGCTGAGAA+GGG + chr3_2:67623902-67623921 Msa0419520:CDS 40.0%
AAACAAAAATAGCCAGCAGG+TGG - chr3_2:67623958-67623977 None:intergenic 40.0%
CGATAAACCTTGGAGTGGTT+AGG - chr3_2:67622539-67622558 None:intergenic 45.0%
ATGCCACTACTCTCTTCTCA+TGG + chr3_2:67623565-67623584 Msa0419520:intron 45.0%
TGCCACTACTCTCTTCTCAT+GGG + chr3_2:67623566-67623585 Msa0419520:intron 45.0%
CTCAACAATGGGAGGATGAT+TGG + chr3_2:67623856-67623875 Msa0419520:CDS 45.0%
! GGTATCTGAGACTTTGAGCT+CGG + chr3_2:67624008-67624027 Msa0419520:three_prime_UTR 45.0%
CGATAAACCTTGGAGTGGTT+AGG - chr3_2:67622539-67622558 None:intergenic 45.0%
ATGCCACTACTCTCTTCTCA+TGG + chr3_2:67623565-67623584 Msa0419520:intron 45.0%
TGCCACTACTCTCTTCTCAT+GGG + chr3_2:67623566-67623585 Msa0419520:intron 45.0%
CTCAACAATGGGAGGATGAT+TGG + chr3_2:67623856-67623875 Msa0419520:CDS 45.0%
! GGTATCTGAGACTTTGAGCT+CGG + chr3_2:67624008-67624027 Msa0419520:three_prime_UTR 45.0%
AGCGAAACCTAACCACTCCA+AGG + chr3_2:67622529-67622548 Msa0419520:five_prime_UTR 50.0%
ATCCATGGCGACTGAAGCAA+AGG + chr3_2:67622746-67622765 Msa0419520:exon 50.0%
CACCCATGAGAAGAGAGTAG+TGG - chr3_2:67623571-67623590 None:intergenic 50.0%
ACTTGCAGAGTGGGATGACA+TGG + chr3_2:67623815-67623834 Msa0419520:intron 50.0%
AGTGGGATGACATGGAGGAA+GGG + chr3_2:67623823-67623842 Msa0419520:CDS 50.0%
TGTTCAGCTGAGAAGGGAGT+TGG + chr3_2:67623908-67623927 Msa0419520:CDS 50.0%
AGCGAAACCTAACCACTCCA+AGG + chr3_2:67622529-67622548 Msa0419520:five_prime_UTR 50.0%
ATCCATGGCGACTGAAGCAA+AGG + chr3_2:67622746-67622765 Msa0419520:exon 50.0%
CACCCATGAGAAGAGAGTAG+TGG - chr3_2:67623571-67623590 None:intergenic 50.0%
ACTTGCAGAGTGGGATGACA+TGG + chr3_2:67623815-67623834 Msa0419520:intron 50.0%
AGTGGGATGACATGGAGGAA+GGG + chr3_2:67623823-67623842 Msa0419520:CDS 50.0%
TGTTCAGCTGAGAAGGGAGT+TGG + chr3_2:67623908-67623927 Msa0419520:CDS 50.0%
AGCCTTTGCTTCAGTCGCCA+TGG - chr3_2:67622751-67622770 None:intergenic 55.0%
TGAAGCAAAGGCTGTGACCG+AGG + chr3_2:67622758-67622777 Msa0419520:CDS 55.0%
TGCAGAGTGGGATGACATGG+AGG + chr3_2:67623818-67623837 Msa0419520:intron 55.0%
GAGTGGGATGACATGGAGGA+AGG + chr3_2:67623822-67623841 Msa0419520:intron 55.0%
AGCCTTTGCTTCAGTCGCCA+TGG - chr3_2:67622751-67622770 None:intergenic 55.0%
TGAAGCAAAGGCTGTGACCG+AGG + chr3_2:67622758-67622777 Msa0419520:CDS 55.0%
TGCAGAGTGGGATGACATGG+AGG + chr3_2:67623818-67623837 Msa0419520:intron 55.0%
GAGTGGGATGACATGGAGGA+AGG + chr3_2:67623822-67623841 Msa0419520:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 67622439 67624334 67622439 ID=Msa0419520;Name=Msa0419520
chr3_2 mRNA 67622439 67624334 67622439 ID=Msa0419520-mRNA-1;Parent=Msa0419520;Name=Msa0419520-mRNA-1;_AED=0.00;_eAED=0.00;_QI=158|1|1|1|0.5|0.33|3|381|73
chr3_2 exon 67622439 67622582 67622439 ID=Msa0419520-mRNA-1:exon:15752;Parent=Msa0419520-mRNA-1
chr3_2 exon 67622736 67622840 67622736 ID=Msa0419520-mRNA-1:exon:15753;Parent=Msa0419520-mRNA-1
chr3_2 exon 67623823 67624334 67623823 ID=Msa0419520-mRNA-1:exon:15754;Parent=Msa0419520-mRNA-1
chr3_2 five_prime_UTR 67622439 67622582 67622439 ID=Msa0419520-mRNA-1:five_prime_utr;Parent=Msa0419520-mRNA-1
chr3_2 five_prime_UTR 67622736 67622749 67622736 ID=Msa0419520-mRNA-1:five_prime_utr;Parent=Msa0419520-mRNA-1
chr3_2 CDS 67622750 67622840 67622750 ID=Msa0419520-mRNA-1:cds;Parent=Msa0419520-mRNA-1
chr3_2 CDS 67623823 67623953 67623823 ID=Msa0419520-mRNA-1:cds;Parent=Msa0419520-mRNA-1
chr3_2 three_prime_UTR 67623954 67624334 67623954 ID=Msa0419520-mRNA-1:three_prime_utr;Parent=Msa0419520-mRNA-1
Gene Sequence

>Msa0419520

ATGGCGACTGAAGCAAAGGCTGTGACCGAGGATGTCAAGATCGATCTATTCGAAGACGATGATGAGTTCGAAGAGTTTGAAATCAATGAAGAGTGGGATGACATGGAGGAAGGGAAAGAAGTAACTCAACAATGGGAGGATGATTGGGATGATGATGATGTTAGCGATGATTTCTCTGTTCAGCTGAGAAGGGAGTTGGAGAAGACTACTGATAAGAATTAA

Protein sequence

>Msa0419520

MATEAKAVTEDVKIDLFEDDDEFEEFEINEEWDDMEEGKEVTQQWEDDWDDDDVSDDFSVQLRRELEKTTDKN*