Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0603670 | Msa1194610 | 0.807824 | 4.185840e-50 | -8.615850e-47 |
| Msa0682090 | Msa1194610 | 0.801430 | 9.036906e-49 | -8.615850e-47 |
| Msa0682140 | Msa1194610 | 0.801854 | 7.397575e-49 | -8.615850e-47 |
| Msa0715410 | Msa1194610 | 0.819411 | 1.178104e-52 | -8.615850e-47 |
| Msa0217290 | Msa1194610 | 0.828364 | 9.369569e-55 | -8.615850e-47 |
| Msa0994390 | Msa1194610 | 0.802216 | 6.232329e-49 | -8.615850e-47 |
| Msa1063690 | Msa1194610 | 0.832215 | 1.073338e-55 | -8.615850e-47 |
| Msa1064250 | Msa1194610 | 0.811770 | 5.929289e-51 | -8.615850e-47 |
| Msa0349700 | Msa1194610 | 0.802868 | 4.572752e-49 | -8.615850e-47 |
| Msa1111870 | Msa1194610 | 0.804855 | 1.767799e-49 | -8.615850e-47 |
| Msa1194610 | Msa1381480 | 0.806568 | 7.721458e-50 | -8.615850e-47 |
| Msa0532930 | Msa1194610 | 0.801613 | 8.289891e-49 | -8.615850e-47 |
| Msa0901320 | Msa1194610 | 0.811029 | 8.586366e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 23 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCTGAACTATTAGATTGC+CGG | 0.328751 | 8_1:-41894013 | None:intergenic |
| GGGGACAATGCTAGAGTAAA+AGG | 0.336899 | 8_1:+41895993 | Msa1194610:CDS |
| ATGCTCAAACTTCAAACTCT+TGG | 0.379577 | 8_1:-41894344 | None:intergenic |
| TGCTCAAACTTCAAACTCTT+GGG | 0.424863 | 8_1:-41894343 | None:intergenic |
| GTTTGAAGTCTGAGCATTGA+TGG | 0.447125 | 8_1:+41895972 | Msa1194610:intron |
| AACTATTAGATTGCCGGCCA+TGG | 0.475072 | 8_1:-41894007 | None:intergenic |
| AACTCTATGACGACCATGGC+AGG | 0.476350 | 8_1:+41895658 | Msa1194610:CDS |
| GGCGACAATGATAGAGCAAA+AGG | 0.489136 | 8_1:+41894370 | Msa1194610:CDS |
| AATTCTATGACGACCATGGC+CGG | 0.496081 | 8_1:+41893994 | Msa1194610:CDS |
| CTCCGTAGAAAACCTCTTTG+AGG | 0.496466 | 8_1:+41893157 | Msa1194610:CDS |
| TTAGATACCGGAAATGGAAA+GGG | 0.497468 | 8_1:+41893968 | Msa1194610:intron |
| TTAGATACCGGAAATGGAAA+GGG | 0.497468 | 8_1:+41895632 | Msa1194610:intron |
| TTTGAAGTCTGAGCATTGAT+GGG | 0.507518 | 8_1:+41895973 | Msa1194610:intron |
| AACTATTAGATTGCCTGCCA+TGG | 0.509410 | 8_1:-41895671 | None:intergenic |
| TTTAGATACCGGAAATGGAA+AGG | 0.514084 | 8_1:+41893967 | Msa1194610:intron |
| TTTAGATACCGGAAATGGAA+AGG | 0.514494 | 8_1:+41895631 | Msa1194610:intron |
| AGTTTGAAGTTTGAGCATGA+TGG | 0.569719 | 8_1:+41894349 | Msa1194610:CDS |
| CGGCAATCTAATAGTTCAGA+CGG | 0.590609 | 8_1:+41894014 | Msa1194610:CDS |
| AGGCAATCTAATAGTTCAGA+CGG | 0.607021 | 8_1:+41895678 | Msa1194610:CDS |
| TGGAAGGTACGTCCTCAAAG+AGG | 0.630084 | 8_1:-41893169 | None:intergenic |
| TTGAAGTCTGAGCATTGATG+GGG | 0.647490 | 8_1:+41895974 | Msa1194610:intron |
| AGAACAACAAGAAAAGAGCT+CGG | 0.655873 | 8_1:+41895724 | Msa1194610:CDS |
| CAATGCTAGAGTAAAAGGTG+AGG | 0.699300 | 8_1:+41895998 | Msa1194610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATTGTTTAGAGTTAA+CGG | + | chr8_1:41894269-41894288 | Msa1194610:intron | 15.0% |
| !!! | ATTTTTTATTCTGAAGTAAA+AGG | + | chr8_1:41894527-41894546 | Msa1194610:intron | 15.0% |
| !! | AAAAAAAGTGAATGTTATAA+AGG | - | chr8_1:41894837-41894856 | None:intergenic | 15.0% |
| !!! | TTATAACATTCACTTTTTTT+AGG | + | chr8_1:41894837-41894856 | Msa1194610:intron | 15.0% |
| !!! | ACATGTTTTTGATTGATAAT+TGG | + | chr8_1:41893464-41893483 | Msa1194610:intron | 20.0% |
| !!! | ATAATTGGACTAAATTTTGA+GGG | + | chr8_1:41893479-41893498 | Msa1194610:intron | 20.0% |
| !! | AATTACCAAACATTATTCTT+TGG | - | chr8_1:41894304-41894323 | None:intergenic | 20.0% |
| !! | GTAATTGATTAAAATGCAAT+AGG | + | chr8_1:41894318-41894337 | Msa1194610:intron | 20.0% |
| !!! | ACATGTTTTTGATTGATAAT+TGG | + | chr8_1:41893464-41893483 | Msa1194610:intron | 20.0% |
| !!! | ATAATTGGACTAAATTTTGA+GGG | + | chr8_1:41893479-41893498 | Msa1194610:intron | 20.0% |
| !! | ATGAAATGACACAATATTAT+AGG | + | chr8_1:41893666-41893685 | Msa1194610:intron | 20.0% |
| !! | TGAAATGACACAATATTATA+GGG | + | chr8_1:41893667-41893686 | Msa1194610:intron | 20.0% |
| !! | AATTACCAAACATTATTCTT+TGG | - | chr8_1:41894304-41894323 | None:intergenic | 20.0% |
| ! | TATTATCAACTAGAGTTGTT+AGG | + | chr8_1:41893243-41893262 | Msa1194610:intron | 25.0% |
| ! | TATCAATCAAAAACATGTCT+GGG | - | chr8_1:41893462-41893481 | None:intergenic | 25.0% |
| ! | TTATCAATCAAAAACATGTC+TGG | - | chr8_1:41893463-41893482 | None:intergenic | 25.0% |
| !! | GATAATTGGACTAAATTTTG+AGG | + | chr8_1:41893478-41893497 | Msa1194610:intron | 25.0% |
| ! | ACATAACAGAATGCAATTAA+AGG | - | chr8_1:41893515-41893534 | None:intergenic | 25.0% |
| ! | CAATTCATTTACATTGTTGT+GGG | + | chr8_1:41893637-41893656 | Msa1194610:intron | 25.0% |
| !!! | TTGCATGTTTTTTTAGATAC+CGG | + | chr8_1:41893956-41893975 | Msa1194610:intron | 25.0% |
| !! | TATACATTTGTTAAGCAACA+TGG | + | chr8_1:41894171-41894190 | Msa1194610:intron | 25.0% |
| ! | TGCTTGCTTGATATTAAAAA+GGG | - | chr8_1:41894249-41894268 | None:intergenic | 25.0% |
| ! | ATGCTTGCTTGATATTAAAA+AGG | - | chr8_1:41894250-41894269 | None:intergenic | 25.0% |
| ! | CAAAACCAAAGAATAATGTT+TGG | + | chr8_1:41894296-41894315 | Msa1194610:intron | 25.0% |
| ! | TTATGATGCTAGAGTAAAAA+AGG | + | chr8_1:41894396-41894415 | Msa1194610:CDS | 25.0% |
| !!! | TTTATTCTGAAGTAAAAGGA+AGG | + | chr8_1:41894531-41894550 | Msa1194610:intron | 25.0% |
| ! | ATGTGAACATTCTAAACATT+TGG | - | chr8_1:41894677-41894696 | None:intergenic | 25.0% |
| !! | CTAATTCTATCCTTTCTTTT+TGG | + | chr8_1:41894783-41894802 | Msa1194610:intron | 25.0% |
| ! | TATCAATCAAAAACATGTCT+GGG | - | chr8_1:41893462-41893481 | None:intergenic | 25.0% |
| ! | TTATCAATCAAAAACATGTC+TGG | - | chr8_1:41893463-41893482 | None:intergenic | 25.0% |
| !! | GATAATTGGACTAAATTTTG+AGG | + | chr8_1:41893478-41893497 | Msa1194610:intron | 25.0% |
| ! | ACATAACAGAATGCAATTAA+AGG | - | chr8_1:41893515-41893534 | None:intergenic | 25.0% |
| !!! | ATTTTTTAGCTACATTGATG+TGG | + | chr8_1:41895298-41895317 | Msa1194610:intron | 25.0% |
| !!! | TTTTTTAGCTACATTGATGT+GGG | + | chr8_1:41895299-41895318 | Msa1194610:intron | 25.0% |
| !!! | TTTGCATGTTTTTTAGATAC+CGG | + | chr8_1:41895620-41895639 | Msa1194610:intron | 25.0% |
| !! | TATACATTTGTTAAGCAACA+TGG | + | chr8_1:41894171-41894190 | Msa1194610:intron | 25.0% |
| ! | CAAAACCAAAGAATAATGTT+TGG | + | chr8_1:41894296-41894315 | Msa1194610:intron | 25.0% |
| ! | GTAATTGATTAAAATGCAGT+AGG | + | chr8_1:41895940-41895959 | Msa1194610:intron | 25.0% |
| TGCTTACAATAGAACTTATG+TGG | - | chr8_1:41893213-41893232 | None:intergenic | 30.0% | |
| !! | ACTCTAGTTGATAATAACAC+TGG | - | chr8_1:41893239-41893258 | None:intergenic | 30.0% |
| ACATGGAAAACAGAAATACA+AGG | - | chr8_1:41893286-41893305 | None:intergenic | 30.0% | |
| CAACACAAATAAAGAGAACA+AGG | - | chr8_1:41893376-41893395 | None:intergenic | 30.0% | |
| ! | CTTGTTCTCTTTATTTGTGT+TGG | + | chr8_1:41893374-41893393 | Msa1194610:intron | 30.0% |
| ATCAATCAAAAACATGTCTG+GGG | - | chr8_1:41893461-41893480 | None:intergenic | 30.0% | |
| !! | CTAAATTTTGAGGGAGAAAA+TGG | + | chr8_1:41893488-41893507 | Msa1194610:intron | 30.0% |
| GCATTCTGTTATGTTTATTG+AGG | + | chr8_1:41893521-41893540 | Msa1194610:intron | 30.0% | |
| ! | ATGTTTATTGAGGTGTTAAG+TGG | + | chr8_1:41893531-41893550 | Msa1194610:intron | 30.0% |
| TTGGATAGCTAGATAAAAGA+GGG | + | chr8_1:41893554-41893573 | Msa1194610:intron | 30.0% | |
| CCACAACAATGTAAATGAAT+TGG | - | chr8_1:41893639-41893658 | None:intergenic | 30.0% | |
| CCAATTCATTTACATTGTTG+TGG | + | chr8_1:41893636-41893655 | Msa1194610:intron | 30.0% | |
| ! | TCATTGATTAACCTTGTTAG+AGG | + | chr8_1:41893743-41893762 | Msa1194610:intron | 30.0% |
| ! | CATTGATTAACCTTGTTAGA+GGG | + | chr8_1:41893744-41893763 | Msa1194610:intron | 30.0% |
| !!! | GTTTTTTTAGATACCGGAAA+TGG | + | chr8_1:41893962-41893981 | Msa1194610:intron | 30.0% |
| ! | AATTTTTCCCTTTCCATTTC+CGG | - | chr8_1:41893978-41893997 | None:intergenic | 30.0% |
| ATGTCACATCAAAAGAAGAA+AGG | - | chr8_1:41894103-41894122 | None:intergenic | 30.0% | |
| AAAAACATATCGCATACACA+TGG | - | chr8_1:41894151-41894170 | None:intergenic | 30.0% | |
| TGTTATGATGCTAGAGTAAA+AGG | + | chr8_1:41894425-41894444 | Msa1194610:intron | 30.0% | |
| AGGATGTTAGAGAAAAATGA+AGG | + | chr8_1:41894450-41894469 | Msa1194610:intron | 30.0% | |
| !! | TGACTCATTTTTGCATGAAA+TGG | - | chr8_1:41894593-41894612 | None:intergenic | 30.0% |
| ! | ATTCTATCCTTTCTTTTTGG+AGG | + | chr8_1:41894786-41894805 | Msa1194610:intron | 30.0% |
| AATTGTCAACTAGAGTTGTT+AGG | + | chr8_1:41894898-41894917 | Msa1194610:intron | 30.0% | |
| ACATGGAAAACAGAAATACA+AGG | - | chr8_1:41893286-41893305 | None:intergenic | 30.0% | |
| CAACACAAATAAAGAGAACA+AGG | - | chr8_1:41893376-41893395 | None:intergenic | 30.0% | |
| ! | CTTGTTCTCTTTATTTGTGT+TGG | + | chr8_1:41893374-41893393 | Msa1194610:intron | 30.0% |
| ATCAATCAAAAACATGTCTG+GGG | - | chr8_1:41893461-41893480 | None:intergenic | 30.0% | |
| !! | CTAAATTTTGAGGGAGAAAA+TGG | + | chr8_1:41893488-41893507 | Msa1194610:intron | 30.0% |
| GCATTCTGTTATGTTTATTG+AGG | + | chr8_1:41893521-41893540 | Msa1194610:intron | 30.0% | |
| TTGGATAGCTAGATAAAAGA+GGG | + | chr8_1:41893554-41893573 | Msa1194610:intron | 30.0% | |
| !! | ACTAATCTATAACTTGCTAG+AGG | + | chr8_1:41895391-41895410 | Msa1194610:intron | 30.0% |
| !! | CTAATCTATAACTTGCTAGA+GGG | + | chr8_1:41895392-41895411 | Msa1194610:intron | 30.0% |
| !!! | TGTTTTTTAGATACCGGAAA+TGG | + | chr8_1:41895626-41895645 | Msa1194610:intron | 30.0% |
| !!! | CTTTTCTTGTTGTTCTTCAT+CGG | - | chr8_1:41895720-41895739 | None:intergenic | 30.0% |
| TGCTTGCTTGATGTTAAAAA+GGG | - | chr8_1:41895871-41895890 | None:intergenic | 30.0% | |
| ATGCTTGCTTGATGTTAAAA+AGG | - | chr8_1:41895872-41895891 | None:intergenic | 30.0% | |
| ATAGAGACAATTGTTGTGGA+AGG | - | chr8_1:41893188-41893207 | None:intergenic | 35.0% | |
| GGATATAGAGACAATTGTTG+TGG | - | chr8_1:41893192-41893211 | None:intergenic | 35.0% | |
| ! | TTCTGTTTTCCATGTTGAAG+AGG | + | chr8_1:41893291-41893310 | Msa1194610:intron | 35.0% |
| ! | TCTGTTTTCCATGTTGAAGA+GGG | + | chr8_1:41893292-41893311 | Msa1194610:intron | 35.0% |
| CATAGACAAAATAACAGCTC+AGG | - | chr8_1:41893340-41893359 | None:intergenic | 35.0% | |
| ! | TTATTGAGGTGTTAAGTGGT+TGG | + | chr8_1:41893535-41893554 | Msa1194610:intron | 35.0% |
| GTTGGATAGCTAGATAAAAG+AGG | + | chr8_1:41893553-41893572 | Msa1194610:intron | 35.0% | |
| ATAGCTAGATAAAAGAGGGT+TGG | + | chr8_1:41893558-41893577 | Msa1194610:intron | 35.0% | |
| ! | AGTTTAGAATATGCACTGTC+TGG | + | chr8_1:41893688-41893707 | Msa1194610:intron | 35.0% |
| CATGTAATGCACTAATGTGT+TGG | + | chr8_1:41893714-41893733 | Msa1194610:intron | 35.0% | |
| ! | TAATGCACTAATGTGTTGGT+AGG | + | chr8_1:41893718-41893737 | Msa1194610:intron | 35.0% |
| TTTAGATACCGGAAATGGAA+AGG | + | chr8_1:41893967-41893986 | Msa1194610:intron | 35.0% | |
| TTAGATACCGGAAATGGAAA+GGG | + | chr8_1:41893968-41893987 | Msa1194610:intron | 35.0% | |
| GAAAAATTCTATGACGACCA+TGG | + | chr8_1:41893990-41894009 | Msa1194610:CDS | 35.0% | |
| ! | CTTTTCTTGTCGTTCTTCAT+CGG | - | chr8_1:41894057-41894076 | None:intergenic | 35.0% |
| TGCTCAAACTTCAAACTCTT+GGG | - | chr8_1:41894346-41894365 | None:intergenic | 35.0% | |
| ATGCTCAAACTTCAAACTCT+TGG | - | chr8_1:41894347-41894366 | None:intergenic | 35.0% | |
| ! | AGTTTGAAGTTTGAGCATGA+TGG | + | chr8_1:41894349-41894368 | Msa1194610:CDS | 35.0% |
| ATGCTAGAGTAAAAAAGGTG+AGG | + | chr8_1:41894401-41894420 | Msa1194610:intron | 35.0% | |
| GAGAAAAATGAAGGAGATGA+CGG | + | chr8_1:41894459-41894478 | Msa1194610:intron | 35.0% | |
| GAACTTTCTGAACTCTAAAC+TGG | - | chr8_1:41894640-41894659 | None:intergenic | 35.0% | |
| ATAACGTCCTCCAAAAAGAA+AGG | - | chr8_1:41894796-41894815 | None:intergenic | 35.0% | |
| !!! | TTTTAGGACTTCAAAACAGC+AGG | + | chr8_1:41894853-41894872 | Msa1194610:intron | 35.0% |
| ! | TTTAGGACTTCAAAACAGCA+GGG | + | chr8_1:41894854-41894873 | Msa1194610:intron | 35.0% |
| ! | TTCTGTTTTCCATGTTGAAG+AGG | + | chr8_1:41893291-41893310 | Msa1194610:intron | 35.0% |
| ! | TCTGTTTTCCATGTTGAAGA+GGG | + | chr8_1:41893292-41893311 | Msa1194610:intron | 35.0% |
| CATAGACAAAATAACAGCTC+AGG | - | chr8_1:41893340-41893359 | None:intergenic | 35.0% | |
| ! | TTGGTTGATACTATGACATG+CGG | + | chr8_1:41893393-41893412 | Msa1194610:intron | 35.0% |
| ATGTTTATTGAGGCGTAAAG+TGG | + | chr8_1:41895186-41895205 | Msa1194610:intron | 35.0% | |
| GTTGGATAGCTAGATAAAAG+AGG | + | chr8_1:41893553-41893572 | Msa1194610:intron | 35.0% | |
| ATAGCTAGATAAAAGAGGGT+TGG | + | chr8_1:41893558-41893577 | Msa1194610:intron | 35.0% | |
| ! | CATGTTCTAGCATTTGGAAT+TGG | + | chr8_1:41893769-41893788 | Msa1194610:intron | 35.0% |
| ! | TAAATCTTGTTTCCGTGTCT+AGG | + | chr8_1:41895463-41895482 | Msa1194610:intron | 35.0% |
| GTACAAAAATGTCCTAGACA+CGG | - | chr8_1:41895478-41895497 | None:intergenic | 35.0% | |
| TTTAGATACCGGAAATGGAA+AGG | + | chr8_1:41893967-41893986 | Msa1194610:intron | 35.0% | |
| TTAGATACCGGAAATGGAAA+GGG | + | chr8_1:41893968-41893987 | Msa1194610:intron | 35.0% | |
| ! | AGTTTTTCCCTTTCCATTTC+CGG | - | chr8_1:41895642-41895661 | None:intergenic | 35.0% |
| AGGCAATCTAATAGTTCAGA+CGG | + | chr8_1:41895678-41895697 | Msa1194610:CDS | 35.0% | |
| AGAACAACAAGAAAAGAGCT+CGG | + | chr8_1:41895724-41895743 | Msa1194610:CDS | 35.0% | |
| !! | TTTGAAGTCTGAGCATTGAT+GGG | + | chr8_1:41895973-41895992 | Msa1194610:intron | 35.0% |
| ! | GTCCTCAAAGAGGTTTTCTA+CGG | - | chr8_1:41893162-41893181 | None:intergenic | 40.0% |
| ! | CTGTTTTCCATGTTGAAGAG+GGG | + | chr8_1:41893293-41893312 | Msa1194610:intron | 40.0% |
| ! | TGGTTGATACTATGACATGC+TGG | + | chr8_1:41893394-41893413 | Msa1194610:intron | 40.0% |
| TGATACTATGACATGCTGGA+TGG | + | chr8_1:41893398-41893417 | Msa1194610:intron | 40.0% | |
| GATACTATGACATGCTGGAT+GGG | + | chr8_1:41893399-41893418 | Msa1194610:intron | 40.0% | |
| !!! | GGGACGATTTTGATTCATAG+AGG | - | chr8_1:41893441-41893460 | None:intergenic | 40.0% |
| AGAACATGAACCCTCTAACA+AGG | - | chr8_1:41893757-41893776 | None:intergenic | 40.0% | |
| AGGGTTCATGTTCTAGCATT+TGG | + | chr8_1:41893763-41893782 | Msa1194610:intron | 40.0% | |
| GGAATGTTGTCTCGTTGTAT+TGG | + | chr8_1:41893784-41893803 | Msa1194610:intron | 40.0% | |
| TTGTATTGGAATGTTGTCCG+TGG | + | chr8_1:41893798-41893817 | Msa1194610:intron | 40.0% | |
| CGTCTGAACTATTAGATTGC+CGG | - | chr8_1:41894016-41894035 | None:intergenic | 40.0% | |
| CGGCAATCTAATAGTTCAGA+CGG | + | chr8_1:41894014-41894033 | Msa1194610:CDS | 40.0% | |
| TGATGCTAGAGTAAAAGGTG+AGG | + | chr8_1:41894430-41894449 | Msa1194610:intron | 40.0% | |
| TCTCAAAATCTTGCACCACT+TGG | + | chr8_1:41894740-41894759 | Msa1194610:intron | 40.0% | |
| ! | CTGTTTTCCATGTTGAAGAG+GGG | + | chr8_1:41893293-41893312 | Msa1194610:intron | 40.0% |
| ! | TGGTTGATACTATGACATGC+GGG | + | chr8_1:41893394-41893413 | Msa1194610:intron | 40.0% |
| TTATTGAGGCGTAAAGTGGT+TGG | + | chr8_1:41895190-41895209 | Msa1194610:intron | 40.0% | |
| AGGGTTCATGTTCTAGCATT+TGG | + | chr8_1:41893763-41893782 | Msa1194610:intron | 40.0% | |
| GAAAAACTCTATGACGACCA+TGG | + | chr8_1:41895654-41895673 | Msa1194610:CDS | 40.0% | |
| AACTATTAGATTGCCTGCCA+TGG | - | chr8_1:41895674-41895693 | None:intergenic | 40.0% | |
| ! | GCTTGCTAGATACTCTTACT+AGG | + | chr8_1:41895837-41895856 | Msa1194610:intron | 40.0% |
| !! | GTTTGAAGTCTGAGCATTGA+TGG | + | chr8_1:41895972-41895991 | Msa1194610:intron | 40.0% |
| !! | TTGAAGTCTGAGCATTGATG+GGG | + | chr8_1:41895974-41895993 | Msa1194610:intron | 40.0% |
| CAATGCTAGAGTAAAAGGTG+AGG | + | chr8_1:41895998-41896017 | Msa1194610:CDS | 40.0% | |
| CTCCGTAGAAAACCTCTTTG+AGG | + | chr8_1:41893157-41893176 | Msa1194610:CDS | 45.0% | |
| GTACAATAGTGTCCTAGCCA+CGG | - | chr8_1:41893818-41893837 | None:intergenic | 45.0% | |
| AATTCTATGACGACCATGGC+CGG | + | chr8_1:41893994-41894013 | Msa1194610:CDS | 45.0% | |
| AACTATTAGATTGCCGGCCA+TGG | - | chr8_1:41894010-41894029 | None:intergenic | 45.0% | |
| ! | GCTTGCTAGAGACTCTTACA+AGG | + | chr8_1:41894215-41894234 | Msa1194610:intron | 45.0% |
| GGCGACAATGATAGAGCAAA+AGG | + | chr8_1:41894370-41894389 | Msa1194610:CDS | 45.0% | |
| !! | GATGACGGTATCGACAACAA+AGG | + | chr8_1:41894474-41894493 | Msa1194610:intron | 45.0% |
| TGATACTATGACATGCGGGA+TGG | + | chr8_1:41895053-41895072 | Msa1194610:intron | 45.0% | |
| GATACTATGACATGCGGGAT+GGG | + | chr8_1:41895054-41895073 | Msa1194610:intron | 45.0% | |
| !!! | GGGACGATTTTGATTCATGG+AGG | - | chr8_1:41895096-41895115 | None:intergenic | 45.0% |
| !!! | CTGGGGACGATTTTGATTCA+TGG | - | chr8_1:41893444-41893463 | None:intergenic | 45.0% |
| GGGGACAATGCTAGAGTAAA+AGG | + | chr8_1:41895993-41896012 | Msa1194610:CDS | 45.0% | |
| ! | TGGAAGGTACGTCCTCAAAG+AGG | - | chr8_1:41893172-41893191 | None:intergenic | 50.0% |
| CTGCAATCCCCTCTTCAACA+TGG | - | chr8_1:41893303-41893322 | None:intergenic | 50.0% | |
| TTGGAATGTTGTCCGTGGCT+AGG | + | chr8_1:41893803-41893822 | Msa1194610:intron | 50.0% | |
| CCTAACATGCAGCATCCAAG+TGG | - | chr8_1:41894758-41894777 | None:intergenic | 50.0% | |
| CCACTTGGATGCTGCATGTT+AGG | + | chr8_1:41894755-41894774 | Msa1194610:intron | 50.0% | |
| CTGCAATCCCCTCTTCAACA+TGG | - | chr8_1:41893303-41893322 | None:intergenic | 50.0% | |
| AACTCTATGACGACCATGGC+AGG | + | chr8_1:41895658-41895677 | Msa1194610:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 41893146 | 41896040 | 41893146 | ID=Msa1194610;Name=Msa1194610 |
| chr8_1 | mRNA | 41893146 | 41896040 | 41893146 | ID=Msa1194610-mRNA-1;Parent=Msa1194610;Name=Msa1194610-mRNA-1;_AED=0.31;_eAED=0.43;_QI=0|0.5|0.4|0.8|1|1|5|0|131 |
| chr8_1 | exon | 41893146 | 41893181 | 41893146 | ID=Msa1194610-mRNA-1:exon:13535;Parent=Msa1194610-mRNA-1 |
| chr8_1 | exon | 41893972 | 41894082 | 41893972 | ID=Msa1194610-mRNA-1:exon:13536;Parent=Msa1194610-mRNA-1 |
| chr8_1 | exon | 41894340 | 41894417 | 41894340 | ID=Msa1194610-mRNA-1:exon:13537;Parent=Msa1194610-mRNA-1 |
| chr8_1 | exon | 41895636 | 41895745 | 41895636 | ID=Msa1194610-mRNA-1:exon:13538;Parent=Msa1194610-mRNA-1 |
| chr8_1 | exon | 41895980 | 41896040 | 41895980 | ID=Msa1194610-mRNA-1:exon:13539;Parent=Msa1194610-mRNA-1 |
| chr8_1 | CDS | 41893146 | 41893181 | 41893146 | ID=Msa1194610-mRNA-1:cds;Parent=Msa1194610-mRNA-1 |
| chr8_1 | CDS | 41893972 | 41894082 | 41893972 | ID=Msa1194610-mRNA-1:cds;Parent=Msa1194610-mRNA-1 |
| chr8_1 | CDS | 41894340 | 41894417 | 41894340 | ID=Msa1194610-mRNA-1:cds;Parent=Msa1194610-mRNA-1 |
| chr8_1 | CDS | 41895636 | 41895745 | 41895636 | ID=Msa1194610-mRNA-1:cds;Parent=Msa1194610-mRNA-1 |
| chr8_1 | CDS | 41895980 | 41896040 | 41895980 | ID=Msa1194610-mRNA-1:cds;Parent=Msa1194610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
