AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0901320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901320 MtrunA17_Chr6g0487521 97.273 220 6 0 1 220 1 220 3.34e-154 426
Msa0901320 MtrunA17_Chr8g0389481 83.182 220 35 2 1 220 5 222 2.53e-109 313
Msa0901320 MtrunA17_Chr8g0389471 76.818 220 48 2 1 220 5 221 8.19e-96 278
Msa0901320 MtrunA17_Chr1g0197041 29.577 213 127 6 4 194 3 214 6.83e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0901320 AT2G19830.2 81.982 222 29 5 1 220 1 213 2.15e-110 315
Msa0901320 AT4G29160.1 85.068 221 30 2 1 220 1 219 4.68e-110 315
Msa0901320 AT4G29160.3 85.068 221 30 2 1 220 1 219 4.68e-110 315
Msa0901320 AT2G19830.1 82.828 198 26 3 24 220 4 194 1.42e-98 285
Msa0901320 AT4G29160.2 86.667 180 23 1 42 220 13 192 6.89e-96 278
Msa0901320 AT5G04850.1 29.143 175 111 3 4 169 3 173 4.42e-13 66.6
Msa0901320 AT3G10640.1 29.778 225 113 7 4 194 3 216 8.83e-13 65.9
Msa0901320 AT5G04850.2 28.313 166 106 3 4 160 3 164 8.57e-11 60.5

Find 75 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGCATATGTTGATTTAT+AGG 0.212646 6_1:-97942565 Msa0901320:three_prime_UTR
ATTTGTAGACCACAAATATT+TGG 0.219995 6_1:+97942424 None:intergenic
TATTTAACGCAAAATGATTT+AGG 0.228374 6_1:+97942480 None:intergenic
TCCTCAGGAGTCGGCTTTGC+AGG 0.229972 6_1:+97943123 None:intergenic
AGATGAATTGGCAGCTTTGC+AGG 0.277136 6_1:-97943100 Msa0901320:CDS
TCAATATGAAGTAATGCTTA+TGG 0.277810 6_1:+97942393 None:intergenic
ACTAGAAATGCTCGAGAAAA+AGG 0.286111 6_1:-97945159 Msa0901320:CDS
TTGAATCTGCTTCATGTTCT+CGG 0.295683 6_1:+97943820 None:intergenic
GGAAAATGTACTCCTTAAAA+AGG 0.296574 6_1:-97945138 Msa0901320:CDS
CACCAAAAGAAAGAACAAAA+AGG 0.308755 6_1:-97945084 Msa0901320:CDS
GGAAGCAGAACTTGAAGAAT+TGG 0.342673 6_1:-97943244 Msa0901320:CDS
TTGCTGGATGTGTCTTGTTT+AGG 0.352010 6_1:+97948444 None:intergenic
CGTGCAGGTTGCCTCCCAGC+TGG 0.353565 6_1:+97943153 None:intergenic
CCCACAGTGCACGTCCCAGC+TGG 0.353629 6_1:-97943168 Msa0901320:CDS
CTCGTTTAATTTGTCTAAAG+TGG 0.361888 6_1:+97948413 None:intergenic
AGAAAGATTAGATTAGAAGT+TGG 0.364338 6_1:+97948582 None:intergenic
GAAAGATTAGATTAGAAGTT+GGG 0.373204 6_1:+97948583 None:intergenic
TAAAGTGGCAAGAGCATTGC+TGG 0.395234 6_1:+97948428 None:intergenic
GGAGTCGGCTTTGCAGGAAC+AGG 0.397015 6_1:+97943129 None:intergenic
GTATCGAACATGGATTCATT+TGG 0.411145 6_1:-97942611 Msa0901320:three_prime_UTR
GACTCCTGAGGAAGATGAAT+TGG 0.412289 6_1:-97943112 Msa0901320:CDS
GTTGAAGAAGATGGATGTTT+GGG 0.418399 6_1:+97948658 None:intergenic
TGTTGAAGAAGATGGATGTT+TGG 0.429329 6_1:+97948657 None:intergenic
TGGGATCTGGCGATCTGGAT+TGG 0.438202 6_1:+97948602 None:intergenic
AGAAGATGGATGTTTGGGTT+AGG 0.439603 6_1:+97948663 None:intergenic
GAAGTTGGGATCTGGCGATC+TGG 0.442572 6_1:+97948597 None:intergenic
GGAGCAGGAGCTGTAGTTGC+TGG 0.442696 6_1:+97943189 None:intergenic
AAATCAGCAGCTGCACCAAT+TGG 0.448641 6_1:+97943782 None:intergenic
TGGTGAAAATTGAATCGGTT+TGG 0.452483 6_1:+97948551 None:intergenic
CCAGTTGCGTATTCATGACC+AGG 0.454482 6_1:-97944917 Msa0901320:intron
GGGATCTGGCGATCTGGATT+GGG 0.454946 6_1:+97948603 None:intergenic
TTGTTCTTTACAGGACGAAC+TGG 0.460844 6_1:-97943265 Msa0901320:intron
GTTGTTGGTGAAAATTGAAT+CGG 0.462258 6_1:+97948546 None:intergenic
GCAGATTCAAGAAGCATTGT+CGG 0.464581 6_1:-97943807 Msa0901320:CDS
AGAATTGGAGAGTGCTGAGT+TGG 0.466125 6_1:-97943229 Msa0901320:CDS
ACGGTAGATGCGTTAAGAAC+AGG 0.469044 6_1:-97944032 Msa0901320:CDS
TTCAATGTTTGAAGAGGAAG+AGG 0.475427 6_1:-97944975 Msa0901320:CDS
CCAGCTGGGACGTGCACTGT+GGG 0.476274 6_1:+97943168 None:intergenic
TGCTAAAGCCACCACGGAAA+CGG 0.478535 6_1:-97944051 Msa0901320:CDS
GGGACGTGCACTGTGGGAGC+AGG 0.480823 6_1:+97943174 None:intergenic
CCTGGTCATGAATACGCAAC+TGG 0.481018 6_1:+97944917 None:intergenic
GAAGCATTGTCGGCTCCAAT+TGG 0.484568 6_1:-97943797 Msa0901320:CDS
TTAGATTAGAAGTTGGGATC+TGG 0.486486 6_1:+97948589 None:intergenic
CCAGGTTTGCGTATCGAACA+TGG 0.486892 6_1:-97942621 Msa0901320:intron
CGCATCTACCGTTTCCGTGG+TGG 0.487516 6_1:+97944043 None:intergenic
GGCAGCTTTGCAGGCTGAGA+TGG 0.492052 6_1:-97943091 Msa0901320:CDS
TTTGCAGGAACAGGGCGTGC+AGG 0.497715 6_1:+97943138 None:intergenic
CTGTTCATTTATCTCGTCCA+TGG 0.501356 6_1:+97943844 None:intergenic
CTTCAACATCATATCATCAT+CGG 0.516597 6_1:-97948642 Msa0901320:five_prime_UTR
TGATATGATGTTGAAGAAGA+TGG 0.523258 6_1:+97948649 None:intergenic
GTGCAGGTTGCCTCCCAGCT+GGG 0.526011 6_1:+97943154 None:intergenic
GCTGCCAATTCATCTTCCTC+AGG 0.526016 6_1:+97943108 None:intergenic
ACAGCAATACCAAATATTTG+TGG 0.530701 6_1:-97942433 Msa0901320:three_prime_UTR
GCTGAGATGGCACTTTGAGC+GGG 0.538605 6_1:-97943078 Msa0901320:intron
TAATAGATGATAATGTTAGA+AGG 0.546431 6_1:-97944074 Msa0901320:intron
AATTCATCTTCCTCAGGAGT+CGG 0.548839 6_1:+97943114 None:intergenic
GGCTGAGATGGCACTTTGAG+CGG 0.549673 6_1:-97943079 Msa0901320:exon
CCACAGTGCACGTCCCAGCT+GGG 0.553286 6_1:-97943167 Msa0901320:CDS
CGGCAATTCAATGTTTGAAG+AGG 0.561917 6_1:-97944981 Msa0901320:CDS
AACAGGAGCAGCTACTATGA+AGG 0.577122 6_1:-97944015 Msa0901320:CDS
TGGGTTAGGACAAGATTCCA+AGG 0.579839 6_1:+97948677 None:intergenic
ACAAATATTTGGTATTGCTG+TGG 0.583068 6_1:+97942435 None:intergenic
TAACGCATCTACCGTTTCCG+TGG 0.584559 6_1:+97944040 None:intergenic
CCCAGCTGGGACGTGCACTG+TGG 0.592771 6_1:+97943167 None:intergenic
GAACAACAAGTTGAGCAGCT+TGG 0.596454 6_1:-97944946 Msa0901320:CDS
GAGTCGGCTTTGCAGGAACA+GGG 0.596697 6_1:+97943130 None:intergenic
TCCTGCAAAGCCGACTCCTG+AGG 0.597589 6_1:-97943124 Msa0901320:CDS
AAAAGATTGACGAAGATCGA+AGG 0.598936 6_1:+97948702 None:intergenic
TGATGACGTCGACAAGACCA+TGG 0.612646 6_1:-97943861 Msa0901320:CDS
CACTTTAGACAAATTAAACG+AGG 0.618854 6_1:-97948412 Msa0901320:intron
TCTGGCGATCTGGATTGGGT+AGG 0.635725 6_1:+97948607 None:intergenic
TTTGGCTATCTGATACTGTG+TGG 0.676941 6_1:-97942593 Msa0901320:three_prime_UTR
CAGTGCACGTCCCAGCTGGG+AGG 0.680562 6_1:-97943164 Msa0901320:CDS
ATGTAATAATGCGTGCCACG+TGG 0.684759 6_1:-97948749 Msa0901320:five_prime_UTR
AGAAGGTGCTAAAGCCACCA+CGG 0.700426 6_1:-97944057 Msa0901320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGAATATTTTTTTTGTT+TGG + chr6_1:97942627-97942646 None:intergenic 10.0%
!! TTAATGAAAAATAAAAAAAG+GGG + chr6_1:97942821-97942840 None:intergenic 10.0%
!!! ATGAAGATAAATTTTTTTTT+TGG - chr6_1:97943153-97943172 Msa0901320:CDS 10.0%
!! AACATTTAAATTTAATATGT+CGG + chr6_1:97943319-97943338 None:intergenic 10.0%
!! ATTTCTATAACAAAAAATTA+AGG - chr6_1:97943428-97943447 Msa0901320:intron 10.0%
!!! TTGAAGAATAATTTTATTTT+TGG - chr6_1:97943983-97944002 Msa0901320:intron 10.0%
!!! TGAAGAATAATTTTATTTTT+GGG - chr6_1:97943984-97944003 Msa0901320:intron 10.0%
!!! ACTTTTTGTTTATTTTTATA+TGG + chr6_1:97946523-97946542 None:intergenic 10.0%
!! TAATGAAAAATAAAAAAAGG+GGG + chr6_1:97942820-97942839 None:intergenic 15.0%
!!! CTCATAGATTATAATTTTAA+AGG - chr6_1:97943345-97943364 Msa0901320:intron 15.0%
!! ATAGTCATAAACAAATTAAA+TGG + chr6_1:97943749-97943768 None:intergenic 15.0%
!! AAAATTATTCTTCAATTGAT+AGG + chr6_1:97943978-97943997 None:intergenic 15.0%
!!! GAAGAATAATTTTATTTTTG+GGG - chr6_1:97943985-97944004 Msa0901320:intron 15.0%
!! ACAAAATTAACAAATTCAAT+CGG + chr6_1:97944225-97944244 None:intergenic 15.0%
!! TTAATTTATACATAAACACT+TGG + chr6_1:97944767-97944786 None:intergenic 15.0%
!! AATTAATCATTTGTTTGAAT+TGG + chr6_1:97944952-97944971 None:intergenic 15.0%
!! TGAATTAAGAAAAAGTTTAA+GGG + chr6_1:97945758-97945777 None:intergenic 15.0%
!!! ATTATTTTTTTATAACGTAC+CGG + chr6_1:97946429-97946448 None:intergenic 15.0%
!! ATGATTTATTTAATTGAGTT+TGG - chr6_1:97947236-97947255 Msa0901320:intron 15.0%
!! ACATAAATAAATAAGCATTT+GGG + chr6_1:97947403-97947422 None:intergenic 15.0%
!! AACATAAATAAATAAGCATT+TGG + chr6_1:97947404-97947423 None:intergenic 15.0%
!! AAATGCTTATTTATTTATGT+TGG - chr6_1:97947403-97947422 Msa0901320:intron 15.0%
!!! TCATTTTCTTAAAATATGAT+TGG + chr6_1:97947736-97947755 None:intergenic 15.0%
!!! ATATTGTAATTTGTAACTAA+TGG - chr6_1:97948330-97948349 Msa0901320:intron 15.0%
!!! TATCAAAAGATAACTTTTTA+AGG + chr6_1:97948617-97948636 None:intergenic 15.0%
!! AACAAAACCTTATATGATAA+AGG + chr6_1:97943016-97943035 None:intergenic 20.0%
!!! TTATCATATAAGGTTTTGTT+TGG - chr6_1:97943016-97943035 Msa0901320:intron 20.0%
!!! AAGCTTTTATTTGTTATTCA+TGG - chr6_1:97943098-97943117 Msa0901320:CDS 20.0%
!!! AGCTTTTATTTGTTATTCAT+GGG - chr6_1:97943099-97943118 Msa0901320:CDS 20.0%
!! TTGTTATAGAAATTAAATGC+AGG + chr6_1:97943421-97943440 None:intergenic 20.0%
!! ATTTAGTAAACACTCAATTA+TGG + chr6_1:97943668-97943687 None:intergenic 20.0%
!!! ATTTTCCAATGTAAACTAAT+AGG - chr6_1:97943701-97943720 Msa0901320:intron 20.0%
!!! AATAACCTATTAGTTTACAT+TGG + chr6_1:97943709-97943728 None:intergenic 20.0%
!!! TTATATTGGTTTGATACTTA+CGG + chr6_1:97943823-97943842 None:intergenic 20.0%
!! TAGCTCAATGTTTATTATTT+AGG - chr6_1:97943931-97943950 Msa0901320:intron 20.0%
!! AGCTCAATGTTTATTATTTA+GGG - chr6_1:97943932-97943951 Msa0901320:intron 20.0%
!! GATAGGTATGTATTTATATT+CGG + chr6_1:97943961-97943980 None:intergenic 20.0%
!! AACTTATGAACAATACATAA+AGG + chr6_1:97944052-97944071 None:intergenic 20.0%
!! GACTTATGAATTAACATAAA+AGG - chr6_1:97944112-97944131 Msa0901320:intron 20.0%
!!! AAAGGTAAATTGTTTTCAAA+AGG - chr6_1:97944130-97944149 Msa0901320:intron 20.0%
!! GATAAAAAAAATTATCACGA+AGG + chr6_1:97944333-97944352 None:intergenic 20.0%
!!! AAGTTGTTTTTATCTAAACA+GGG + chr6_1:97944554-97944573 None:intergenic 20.0%
!!! TAAGTTGTTTTTATCTAAAC+AGG + chr6_1:97944555-97944574 None:intergenic 20.0%
!! TGCTTAAGTTATTTGTATAA+TGG - chr6_1:97944581-97944600 Msa0901320:intron 20.0%
!! GCTTAAGTTATTTGTATAAT+GGG - chr6_1:97944582-97944601 Msa0901320:intron 20.0%
!! TATGACATGTTTATCATATA+AGG - chr6_1:97945209-97945228 Msa0901320:intron 20.0%
!!! AATAAGTTGAAAACAACATT+TGG - chr6_1:97945535-97945554 Msa0901320:intron 20.0%
!! GTGAATTAAGAAAAAGTTTA+AGG + chr6_1:97945759-97945778 None:intergenic 20.0%
!! TCTTAATTCACACAAAATTA+CGG - chr6_1:97945768-97945787 Msa0901320:intron 20.0%
!! ATCAATTTATGAGCATATAT+TGG - chr6_1:97945822-97945841 Msa0901320:intron 20.0%
!!! TAATAGATGATAATGTTAGA+AGG - chr6_1:97947070-97947089 Msa0901320:intron 20.0%
!! TTGATTACGTAAAAAAAATG+AGG + chr6_1:97947581-97947600 None:intergenic 20.0%
!!! CTTTTCACTTAATTTTGTTT+TGG - chr6_1:97947626-97947645 Msa0901320:intron 20.0%
!!! TAGATTTTGCCTATATTTTA+AGG - chr6_1:97947670-97947689 Msa0901320:intron 20.0%
!! TATAAATAACACAAATCTGT+CGG + chr6_1:97948112-97948131 None:intergenic 20.0%
!!! ACAACAATCTAAAATAATTC+TGG + chr6_1:97948225-97948244 None:intergenic 20.0%
!!! TTTTAGATTGTTGTTCTATT+TGG - chr6_1:97948231-97948250 Msa0901320:intron 20.0%
!!! AAAGATAACTTTTTAAGGTA+CGG + chr6_1:97948612-97948631 None:intergenic 20.0%
!! TATTTAACGCAAAATGATTT+AGG + chr6_1:97948667-97948686 None:intergenic 20.0%
! GAAAGATTAGATTAGAAGTT+GGG + chr6_1:97942564-97942583 None:intergenic 25.0%
! AGAAAGATTAGATTAGAAGT+TGG + chr6_1:97942565-97942584 None:intergenic 25.0%
! GCATAATCCTTTATCATATA+AGG - chr6_1:97943006-97943025 Msa0901320:intron 25.0%
!! TGATGATTTTTGTCTTGTAT+TGG + chr6_1:97943538-97943557 None:intergenic 25.0%
! CACTCAATTATGGATAAAAT+TGG + chr6_1:97943658-97943677 None:intergenic 25.0%
!!! ATAATTGGATCTGTTTTTTG+CGG + chr6_1:97944292-97944311 None:intergenic 25.0%
! TAACCTATTAAAGAGAACTA+CGG + chr6_1:97944423-97944442 None:intergenic 25.0%
! TCTCTTTAATAGGTTATGTT+TGG - chr6_1:97944427-97944446 Msa0901320:intron 25.0%
!! AATAGGTTATGTTTGGAATT+TGG - chr6_1:97944434-97944453 Msa0901320:intron 25.0%
! GTACATAGTTTATGTGTAAA+CGG + chr6_1:97944796-97944815 None:intergenic 25.0%
!!! TAATACTTCTAGGATTGTTT+GGG + chr6_1:97944904-97944923 None:intergenic 25.0%
!!! TTAATACTTCTAGGATTGTT+TGG + chr6_1:97944905-97944924 None:intergenic 25.0%
!!! ATAAGTTTTGTGATACTGTT+TGG - chr6_1:97945165-97945184 Msa0901320:intron 25.0%
!!! TAAGTTTTGTGATACTGTTT+GGG - chr6_1:97945166-97945185 Msa0901320:intron 25.0%
!!! TTATCATATAAGGTACTGTT+TGG - chr6_1:97945219-97945238 Msa0901320:intron 25.0%
!!! TATCATATAAGGTACTGTTT+GGG - chr6_1:97945220-97945239 Msa0901320:intron 25.0%
!! CTCTTGTTATAGAAATAACT+TGG + chr6_1:97945256-97945275 None:intergenic 25.0%
! AGTGTCTGTATAATTTCAAA+GGG + chr6_1:97945968-97945987 None:intergenic 25.0%
! TAGTGTCTGTATAATTTCAA+AGG + chr6_1:97945969-97945988 None:intergenic 25.0%
! ACCAAAAGAAAGAACAAAAA+GGG - chr6_1:97946061-97946080 Msa0901320:intron 25.0%
! TTCTAATTTCACTTAATCCA+TGG - chr6_1:97946111-97946130 Msa0901320:intron 25.0%
! AATTACGAATTATGTGACTA+TGG + chr6_1:97946286-97946305 None:intergenic 25.0%
! AGATTAGGTTAAAGAAGAAT+GGG + chr6_1:97946663-97946682 None:intergenic 25.0%
! AAGATTAGGTTAAAGAAGAA+TGG + chr6_1:97946664-97946683 None:intergenic 25.0%
!!! TAATCTTATTTTGCCTCTTA+TGG - chr6_1:97947035-97947054 Msa0901320:intron 25.0%
!! GTTTGATTATTTGTACCTTT+TGG - chr6_1:97947439-97947458 Msa0901320:intron 25.0%
! TTCAGACAGATTAAGAAAAA+TGG - chr6_1:97947551-97947570 Msa0901320:intron 25.0%
! TTGAATGTAAACACATGTAT+CGG - chr6_1:97947761-97947780 Msa0901320:intron 25.0%
! AATAAATTCAGAATGCTACA+CGG + chr6_1:97947861-97947880 None:intergenic 25.0%
! CTGAATTTATTGTTCTTTAC+AGG - chr6_1:97947870-97947889 Msa0901320:intron 25.0%
! GACATCAACATATCATTTAA+CGG + chr6_1:97948180-97948199 None:intergenic 25.0%
! ATTATTGAACTGATTGTGAT+TGG - chr6_1:97948403-97948422 Msa0901320:intron 25.0%
!!! TCAAGCATATGTTGATTTAT+AGG - chr6_1:97948579-97948598 Msa0901320:five_prime_UTR 25.0%
! ATTTGTAGACCACAAATATT+TGG + chr6_1:97948723-97948742 None:intergenic 25.0%
! TCAATATGAAGTAATGCTTA+TGG + chr6_1:97948754-97948773 None:intergenic 25.0%
!! GAAAAATGAAGTTTTCTGAT+TGG + chr6_1:97948782-97948801 None:intergenic 25.0%
TGATATGATGTTGAAGAAGA+TGG + chr6_1:97942498-97942517 None:intergenic 30.0%
CTTCAACATCATATCATCAT+CGG - chr6_1:97942502-97942521 Msa0901320:three_prime_UTR 30.0%
! GTTGTTGGTGAAAATTGAAT+CGG + chr6_1:97942601-97942620 None:intergenic 30.0%
!!! TTTTTTGTTTGGATCGTTGT+TGG + chr6_1:97942616-97942635 None:intergenic 30.0%
! ATCATGTTTACGAGAGTTTT+CGG - chr6_1:97942673-97942692 Msa0901320:intron 30.0%
!! CTCGTTTAATTTGTCTAAAG+TGG + chr6_1:97942734-97942753 None:intergenic 30.0%
CACTTTAGACAAATTAAACG+AGG - chr6_1:97942732-97942751 Msa0901320:intron 30.0%
CAAGTTTATCCAAACAAACA+TGG + chr6_1:97942972-97942991 None:intergenic 30.0%
TTTGTTTGGATAAACAGCTA+AGG - chr6_1:97943030-97943049 Msa0901320:intron 30.0%
TTGTTTGGATAAACAGCTAA+GGG - chr6_1:97943031-97943050 Msa0901320:intron 30.0%
TTTCATAAGCTCAATCCAAA+CGG - chr6_1:97943225-97943244 Msa0901320:CDS 30.0%
TAAAAGTTGACGATAGCTAT+TGG - chr6_1:97943603-97943622 Msa0901320:intron 30.0%
ATGAACAATACATAAAGGCA+GGG + chr6_1:97944047-97944066 None:intergenic 30.0%
TATGAACAATACATAAAGGC+AGG + chr6_1:97944048-97944067 None:intergenic 30.0%
TGTATCTTCATAAGCTAACT+TGG + chr6_1:97944077-97944096 None:intergenic 30.0%
! AGATACAATTTTCGTTAGTG+AGG - chr6_1:97944090-97944109 Msa0901320:intron 30.0%
! AAGGTATCATGTAGAGTTTA+TGG - chr6_1:97944149-97944168 Msa0901320:intron 30.0%
ATCATGTAGAGTTTATGGAA+AGG - chr6_1:97944154-97944173 Msa0901320:intron 30.0%
TCCAATTATTGCAATCCATT+CGG - chr6_1:97944303-97944322 Msa0901320:intron 30.0%
TTTCCGTAGTTCTCTTTAAT+AGG - chr6_1:97944417-97944436 Msa0901320:intron 30.0%
TAAAGTCAAACTGTTTCACA+AGG - chr6_1:97944613-97944632 Msa0901320:intron 30.0%
TTTCTATAAGCTCTTGCAAA+TGG - chr6_1:97944700-97944719 Msa0901320:intron 30.0%
TTAGACGATAAGCTCAAATA+AGG - chr6_1:97944728-97944747 Msa0901320:intron 30.0%
AACAACTTATAGACATGTCA+CGG - chr6_1:97944860-97944879 Msa0901320:intron 30.0%
CTACTGCAATTAATACTTCT+AGG + chr6_1:97944914-97944933 None:intergenic 30.0%
ATAGAAACAGGAATTAGAGT+TGG + chr6_1:97945013-97945032 None:intergenic 30.0%
CATAGGTGAAATATAGAAAC+AGG + chr6_1:97945025-97945044 None:intergenic 30.0%
TCTCTCAAATAGGTTCTATT+TGG - chr6_1:97945114-97945133 Msa0901320:CDS 30.0%
! AATGTGCTGGAAATAGTTTT+TGG - chr6_1:97945326-97945345 Msa0901320:intron 30.0%
AAGCTATCATAGAAAGCTTA+TGG - chr6_1:97945511-97945530 Msa0901320:intron 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr6_1:97945641-97945660 Msa0901320:intron 30.0%
TCAAACAAGACAATCCAAAT+AGG - chr6_1:97945732-97945751 Msa0901320:intron 30.0%
AAAAAGTTTAAGGGCCTATT+TGG + chr6_1:97945749-97945768 None:intergenic 30.0%
ACGAATAGATAAACAGTTCA+AGG + chr6_1:97945885-97945904 None:intergenic 30.0%
GGAAAATGTACTCCTTAAAA+AGG - chr6_1:97946006-97946025 Msa0901320:intron 30.0%
!! CTTTCTTTTGGTGTATTCTT+TGG + chr6_1:97946053-97946072 None:intergenic 30.0%
CACCAAAAGAAAGAACAAAA+AGG - chr6_1:97946060-97946079 Msa0901320:intron 30.0%
! ACCCTTTTTGTTCTTTCTTT+TGG + chr6_1:97946065-97946084 None:intergenic 30.0%
!!! TGAGTTTTTGTTTTACACAG+CGG - chr6_1:97946143-97946162 Msa0901320:intron 30.0%
ACATAATTCGTAATTCGCTT+TGG - chr6_1:97946291-97946310 Msa0901320:intron 30.0%
! GTATCTTTATTTGCTGCATT+GGG - chr6_1:97946630-97946649 Msa0901320:intron 30.0%
TAGGAACAGAAAACAGAATA+CGG - chr6_1:97946725-97946744 Msa0901320:intron 30.0%
! GGATCTTCATATATGTTTTC+CGG + chr6_1:97946793-97946812 None:intergenic 30.0%
TTTGTAGATAAGTACTACTC+TGG + chr6_1:97947696-97947715 None:intergenic 30.0%
ATCTACAAAACACTAATGCA+TGG - chr6_1:97947707-97947726 Msa0901320:intron 30.0%
! GAATTCTGTTTCTCTTATTC+TGG - chr6_1:97948365-97948384 Msa0901320:intron 30.0%
ACAAATATTTGGTATTGCTG+TGG + chr6_1:97948712-97948731 None:intergenic 30.0%
ACAGCAATACCAAATATTTG+TGG - chr6_1:97948711-97948730 Msa0901320:five_prime_UTR 30.0%
AAAAGATTGACGAAGATCGA+AGG + chr6_1:97942445-97942464 None:intergenic 35.0%
! CTTCGTCAATCTTTTTACCT+TGG - chr6_1:97942450-97942469 Msa0901320:three_prime_UTR 35.0%
GTTGAAGAAGATGGATGTTT+GGG + chr6_1:97942489-97942508 None:intergenic 35.0%
TGTTGAAGAAGATGGATGTT+TGG + chr6_1:97942490-97942509 None:intergenic 35.0%
TTAGATTAGAAGTTGGGATC+TGG + chr6_1:97942558-97942577 None:intergenic 35.0%
TGGTGAAAATTGAATCGGTT+TGG + chr6_1:97942596-97942615 None:intergenic 35.0%
GCAATTACTCCATGTTTGTT+TGG - chr6_1:97942960-97942979 Msa0901320:intron 35.0%
TTGCATAAGCCAATCAAAAC+AGG + chr6_1:97943057-97943076 None:intergenic 35.0%
!! TGTTATTCATGGGCTTGTTA+AGG - chr6_1:97943109-97943128 Msa0901320:CDS 35.0%
TTCATAAGCTCAATCCAAAC+GGG - chr6_1:97943226-97943245 Msa0901320:CDS 35.0%
AGCTAGCAAAAAGTTTATGC+AGG - chr6_1:97943267-97943286 Msa0901320:intron 35.0%
GCTAGCAAAAAGTTTATGCA+GGG - chr6_1:97943268-97943287 Msa0901320:intron 35.0%
CTAGCAAAAAGTTTATGCAG+GGG - chr6_1:97943269-97943288 Msa0901320:intron 35.0%
ACGATAGCTATTGGAAAAGT+TGG - chr6_1:97943612-97943631 Msa0901320:intron 35.0%
! TTTCGACAACTGAACTTGTT+TGG - chr6_1:97943906-97943925 Msa0901320:intron 35.0%
! TTCGACAACTGAACTTGTTT+GGG - chr6_1:97943907-97943926 Msa0901320:intron 35.0%
TGAACAATACATAAAGGCAG+GGG + chr6_1:97944046-97944065 None:intergenic 35.0%
CCAATTATTGCAATCCATTC+GGG - chr6_1:97944304-97944323 Msa0901320:intron 35.0%
TGCATTTAGCAGTACTCTTA+TGG - chr6_1:97944355-97944374 Msa0901320:intron 35.0%
! AAGGTATTCCGTAGATCTTA+TGG - chr6_1:97944632-97944651 Msa0901320:intron 35.0%
CCTCATTTCCATAAGATCTA+CGG + chr6_1:97944643-97944662 None:intergenic 35.0%
TCAAATAAGGCGATCCAAAA+AGG - chr6_1:97944741-97944760 Msa0901320:intron 35.0%
!! ACATAAACACTTGGCCTTTT+TGG + chr6_1:97944758-97944777 None:intergenic 35.0%
GAGAGCTTATGAGAATAAGT+TGG - chr6_1:97944836-97944855 Msa0901320:intron 35.0%
ACAACTTATAGACATGTCAC+GGG - chr6_1:97944861-97944880 Msa0901320:intron 35.0%
TTCCATAAGCTCTCTCAAAT+AGG - chr6_1:97945104-97945123 Msa0901320:CDS 35.0%
AACCTATTTGAGAGAGCTTA+TGG + chr6_1:97945109-97945128 None:intergenic 35.0%
! TCTTGTTTGAGCTTATCTAC+TGG + chr6_1:97945722-97945741 None:intergenic 35.0%
ACTAGAAATGCTCGAGAAAA+AGG - chr6_1:97945985-97946004 Msa0901320:intron 35.0%
AAAACTCAAGTCACATTCCA+TGG + chr6_1:97946131-97946150 None:intergenic 35.0%
TTCAATGTTTGAAGAGGAAG+AGG - chr6_1:97946169-97946188 Msa0901320:intron 35.0%
AATACAAATGCATTCACACC+TGG + chr6_1:97946248-97946267 None:intergenic 35.0%
GTACGTGCTAATGTATTAAC+CGG - chr6_1:97946407-97946426 Msa0901320:intron 35.0%
! CGTATCTTTATTTGCTGCAT+TGG - chr6_1:97946629-97946648 Msa0901320:intron 35.0%
! GTTAAAGAAGAATGGGCTTA+AGG + chr6_1:97946656-97946675 None:intergenic 35.0%
! AAAGAAAGAGTTTTCGTCAC+TGG + chr6_1:97946814-97946833 None:intergenic 35.0%
AACCAATTTATGTCTCTTGC+TGG - chr6_1:97946845-97946864 Msa0901320:intron 35.0%
ACCAATTTATGTCTCTTGCT+GGG - chr6_1:97946846-97946865 Msa0901320:intron 35.0%
ATCAGCGAATTATGTGACTA+TGG - chr6_1:97946990-97947009 Msa0901320:intron 35.0%
TGTGACTATGGTTTAGACAA+TGG - chr6_1:97947002-97947021 Msa0901320:intron 35.0%
!!! TCTTATTTTGCCTCTTATGG+TGG - chr6_1:97947038-97947057 Msa0901320:intron 35.0%
TTGAATCTGCTTCATGTTCT+CGG + chr6_1:97947327-97947346 None:intergenic 35.0%
!! CTACTCTGGCCTTAAAATAT+AGG + chr6_1:97947682-97947701 None:intergenic 35.0%
CTTCAGATTGAACACATGTT+CGG + chr6_1:97947808-97947827 None:intergenic 35.0%
! ATGTGTTCAATCTGAAGTGT+TGG - chr6_1:97947811-97947830 Msa0901320:intron 35.0%
!!! TGTTCTATTTGGTTTTGCCA+CGG - chr6_1:97948242-97948261 Msa0901320:intron 35.0%
TAACAAAGCCAGCAAAATTC+TGG + chr6_1:97948283-97948302 None:intergenic 35.0%
GTGAAATACACTTATCGTCA+CGG + chr6_1:97948307-97948326 None:intergenic 35.0%
!!! TGAACGCTTTTTTTTCTTCC+AGG - chr6_1:97948505-97948524 Msa0901320:five_prime_UTR 35.0%
GTATCGAACATGGATTCATT+TGG - chr6_1:97948533-97948552 Msa0901320:five_prime_UTR 35.0%
!!! GTGCTACTTTTATTTCCACG+TGG + chr6_1:97942413-97942432 None:intergenic 40.0%
! AGAAGATGGATGTTTGGGTT+AGG + chr6_1:97942484-97942503 None:intergenic 40.0%
!! TTGCTGGATGTGTCTTGTTT+AGG + chr6_1:97942703-97942722 None:intergenic 40.0%
TCATAAGCTCAATCCAAACG+GGG - chr6_1:97943227-97943246 Msa0901320:CDS 40.0%
! TCGACAACTGAACTTGTTTG+GGG - chr6_1:97943908-97943927 Msa0901320:intron 40.0%
TGCGGAAATCATGTGTGATT+GGG + chr6_1:97944274-97944293 None:intergenic 40.0%
TTGCGGAAATCATGTGTGAT+TGG + chr6_1:97944275-97944294 None:intergenic 40.0%
!! CCCGAATGGATTGCAATAAT+TGG + chr6_1:97944307-97944326 None:intergenic 40.0%
CCGTAGATCTTATGGAAATG+AGG - chr6_1:97944640-97944659 Msa0901320:intron 40.0%
GCGCAATTGCAAATAGTTGA+GGG - chr6_1:97944662-97944681 Msa0901320:intron 40.0%
CATTGACAATCACAGCTCAT+AGG + chr6_1:97945042-97945061 None:intergenic 40.0%
GAGCTTATGGAAACAGCTTA+TGG + chr6_1:97945096-97945115 None:intergenic 40.0%
CACATTTCCATAAGCTCTCT+GGG + chr6_1:97945312-97945331 None:intergenic 40.0%
AGACTGTTTGCAAGAGCTTA+TGG + chr6_1:97945370-97945389 None:intergenic 40.0%
TCAATGAAGTCAATCCAAGC+AGG - chr6_1:97945405-97945424 Msa0901320:intron 40.0%
ACATAAACACTTGACCTGCT+TGG + chr6_1:97945422-97945441 None:intergenic 40.0%
ATGCTATCGTAGAGAGCTTA+TGG - chr6_1:97945617-97945636 Msa0901320:intron 40.0%
TGCTATCGTAGAGAGCTTAT+GGG - chr6_1:97945618-97945637 Msa0901320:intron 40.0%
ACAGATTGAGATTGAGAGAG+TGG - chr6_1:97945920-97945939 Msa0901320:intron 40.0%
CGGCAATTCAATGTTTGAAG+AGG - chr6_1:97946163-97946182 Msa0901320:intron 40.0%
ACATAGTCGGTACGCTATTT+CGG - chr6_1:97946378-97946397 Msa0901320:intron 40.0%
TGCTCAAACATTGAAGGAGA+CGG + chr6_1:97946691-97946710 None:intergenic 40.0%
AATACGGAGCAAGAAAACCA+AGG - chr6_1:97946741-97946760 Msa0901320:intron 40.0%
ATACGGAGCAAGAAAACCAA+GGG - chr6_1:97946742-97946761 Msa0901320:intron 40.0%
CCAGAAAACATAGATCTGAC+CGG - chr6_1:97946771-97946790 Msa0901320:intron 40.0%
ACCCAGCAAGAGACATAAAT+TGG + chr6_1:97946850-97946869 None:intergenic 40.0%
! TTCGCGGTTCTTTTACGAAT+TGG + chr6_1:97946934-97946953 None:intergenic 40.0%
! CACATAATTCGCTGATTGAG+TGG + chr6_1:97946986-97947005 None:intergenic 40.0%
! TATTTTGCCTCTTATGGTGG+TGG - chr6_1:97947041-97947060 Msa0901320:intron 40.0%
CTGTTCATTTATCTCGTCCA+TGG + chr6_1:97947303-97947322 None:intergenic 40.0%
!! GCAGATTCAAGAAGCATTGT+CGG - chr6_1:97947337-97947356 Msa0901320:intron 40.0%
CAGCACTATACACAACCAAA+AGG + chr6_1:97947457-97947476 None:intergenic 40.0%
AGTGCTGTACAATACTCTCT+CGG - chr6_1:97947470-97947489 Msa0901320:intron 40.0%
TTGTTCTTTACAGGACGAAC+TGG - chr6_1:97947879-97947898 Msa0901320:intron 40.0%
GGAAGCAGAACTTGAAGAAT+TGG - chr6_1:97947900-97947919 Msa0901320:intron 40.0%
AATTCATCTTCCTCAGGAGT+CGG + chr6_1:97948033-97948052 None:intergenic 40.0%
! AGCTTAAGCCAGAATTTTGC+TGG - chr6_1:97948272-97948291 Msa0901320:intron 40.0%
TGTAACTAATGGCTGTGATG+TGG - chr6_1:97948341-97948360 Msa0901320:intron 40.0%
AAAAGCAGCAAGAGTTGAAG+GGG + chr6_1:97948471-97948490 None:intergenic 40.0%
GAAAAGCAGCAAGAGTTGAA+GGG + chr6_1:97948472-97948491 None:intergenic 40.0%
AGAAAAGCAGCAAGAGTTGA+AGG + chr6_1:97948473-97948492 None:intergenic 40.0%
TTTGGCTATCTGATACTGTG+TGG - chr6_1:97948551-97948570 Msa0901320:five_prime_UTR 40.0%
ATGTAATAATGCGTGCCACG+TGG - chr6_1:97942395-97942414 Msa0901320:three_prime_UTR 45.0%
! TGGGTTAGGACAAGATTCCA+AGG + chr6_1:97942470-97942489 None:intergenic 45.0%
!! TAAAGTGGCAAGAGCATTGC+TGG + chr6_1:97942719-97942738 None:intergenic 45.0%
!!! AGCTAAGGGCCTGTTTTGAT+TGG - chr6_1:97943045-97943064 Msa0901320:intron 45.0%
CGATTCCTTTCATGTAGGAG+GGG + chr6_1:97944023-97944042 None:intergenic 45.0%
GCGATTCCTTTCATGTAGGA+GGG + chr6_1:97944024-97944043 None:intergenic 45.0%
AATCGGTCGTGATACATTCG+CGG + chr6_1:97944208-97944227 None:intergenic 45.0%
GGCGCAATTGCAAATAGTTG+AGG - chr6_1:97944661-97944680 Msa0901320:intron 45.0%
AAGCTATCCCAGAGAGCTTA+TGG - chr6_1:97945302-97945321 Msa0901320:intron 45.0%
GCACATTTCCATAAGCTCTC+TGG + chr6_1:97945313-97945332 None:intergenic 45.0%
GAGAGCTTATGGAAATGTGC+TGG - chr6_1:97945313-97945332 Msa0901320:intron 45.0%
!!! GGCTTTTTCAACTTCTGCTG+CGG + chr6_1:97946032-97946051 None:intergenic 45.0%
! GAACAACAAGTTGAGCAGCT+TGG - chr6_1:97946198-97946217 Msa0901320:intron 45.0%
TCGTAATTCGCTTTGGTACG+TGG - chr6_1:97946298-97946317 Msa0901320:intron 45.0%
ATTCGCTTTGGTACGTGGTA+CGG - chr6_1:97946303-97946322 Msa0901320:intron 45.0%
! CGTAGGAGGGTATACATAGT+CGG - chr6_1:97946365-97946384 Msa0901320:intron 45.0%
AAGGAGACGGGTCAAAGATT+AGG + chr6_1:97946678-97946697 None:intergenic 45.0%
GCTCAAACATTGAAGGAGAC+GGG + chr6_1:97946690-97946709 None:intergenic 45.0%
! GTTTTCTGTTCCTACTCCAG+CGG + chr6_1:97946719-97946738 None:intergenic 45.0%
! CCGGTCAGATCTATGTTTTC+TGG + chr6_1:97946774-97946793 None:intergenic 45.0%
! GTTCGTACCGATCTTCACTT+TGG - chr6_1:97946868-97946887 Msa0901320:intron 45.0%
CCGAGTACCAAAGTGAAGAT+CGG + chr6_1:97946878-97946897 None:intergenic 45.0%
CCGATCTTCACTTTGGTACT+CGG - chr6_1:97946875-97946894 Msa0901320:intron 45.0%
TCACTTTGGTACTCGGTTTC+CGG - chr6_1:97946882-97946901 Msa0901320:intron 45.0%
TTCGTAAAAGAACCGCGAAC+CGG - chr6_1:97946935-97946954 Msa0901320:intron 45.0%
ACACAAACCACCACCATAAG+AGG + chr6_1:97947051-97947070 None:intergenic 45.0%
ACGGTAGATGCGTTAAGAAC+AGG - chr6_1:97947112-97947131 Msa0901320:intron 45.0%
AACAGGAGCAGCTACTATGA+AGG - chr6_1:97947129-97947148 Msa0901320:intron 45.0%
AAATCAGCAGCTGCACCAAT+TGG + chr6_1:97947365-97947384 None:intergenic 45.0%
GTGCTGTACAATACTCTCTC+GGG - chr6_1:97947471-97947490 Msa0901320:intron 45.0%
!! CTGAAGTGTTGGTGCTACAT+TGG - chr6_1:97947822-97947841 Msa0901320:intron 45.0%
!! AGAATTGGAGAGTGCTGAGT+TGG - chr6_1:97947915-97947934 Msa0901320:intron 45.0%
GACTCCTGAGGAAGATGAAT+TGG - chr6_1:97948032-97948051 Msa0901320:intron 45.0%
AGATGAATTGGCAGCTTTGC+AGG - chr6_1:97948044-97948063 Msa0901320:intron 45.0%
! ACACAAATCTGTCGGTTGTG+TGG + chr6_1:97948104-97948123 None:intergenic 45.0%
!! ATTAATGAAAAATAAAAAAA+GGG + chr6_1:97942822-97942841 None:intergenic 5.0%
!! AATTAATGAAAAATAAAAAA+AGG + chr6_1:97942823-97942842 None:intergenic 5.0%
!! TTTAAAAAAAAAATTATAGT+TGG + chr6_1:97943295-97943314 None:intergenic 5.0%
!! ATTTATAGATTTATTTATAT+TGG + chr6_1:97943837-97943856 None:intergenic 5.0%
CAAACGGGGCCTTTATGCAA+CGG - chr6_1:97943241-97943260 Msa0901320:CDS 50.0%
CTAGCTTCGCCGTTGCATAA+AGG + chr6_1:97943253-97943272 None:intergenic 50.0%
TCATGTAGGAGGGGTAGCTT+TGG + chr6_1:97944014-97944033 None:intergenic 50.0%
AGCTACCCCTCCTACATGAA+AGG - chr6_1:97944015-97944034 Msa0901320:CDS 50.0%
GGCGATTCCTTTCATGTAGG+AGG + chr6_1:97944025-97944044 None:intergenic 50.0%
AGGGGCGATTCCTTTCATGT+AGG + chr6_1:97944028-97944047 None:intergenic 50.0%
!! TATCACGAAGGTGTCCCGAA+TGG + chr6_1:97944321-97944340 None:intergenic 50.0%
AAGCACTCGTGAGGCTGTTT+GGG + chr6_1:97945696-97945715 None:intergenic 50.0%
TAAGCACTCGTGAGGCTGTT+TGG + chr6_1:97945697-97945716 None:intergenic 50.0%
TACTGGCATAAGCACTCGTG+AGG + chr6_1:97945705-97945724 None:intergenic 50.0%
! CTTCTGCTGCGGCCTTTTTA+AGG + chr6_1:97946021-97946040 None:intergenic 50.0%
CCTGGTCATGAATACGCAAC+TGG + chr6_1:97946230-97946249 None:intergenic 50.0%
CCAGTTGCGTATTCATGACC+AGG - chr6_1:97946227-97946246 Msa0901320:intron 50.0%
TTCGCTTTGGTACGTGGTAC+GGG - chr6_1:97946304-97946323 Msa0901320:intron 50.0%
TTTGGTACGTGGTACGGGTT+CGG - chr6_1:97946309-97946328 Msa0901320:intron 50.0%
! GCGGCTTGCTCAAACATTGA+AGG + chr6_1:97946697-97946716 None:intergenic 50.0%
AGCAAGAAAACCAAGGGTCG+TGG - chr6_1:97946748-97946767 Msa0901320:intron 50.0%
!! AATTGGTTCGCCTCCATTCG+CGG + chr6_1:97946917-97946936 None:intergenic 50.0%
!! AGAAGGTGCTAAAGCCACCA+CGG - chr6_1:97947087-97947106 Msa0901320:intron 50.0%
TGCTAAAGCCACCACGGAAA+CGG - chr6_1:97947093-97947112 Msa0901320:intron 50.0%
TAACGCATCTACCGTTTCCG+TGG + chr6_1:97947107-97947126 None:intergenic 50.0%
! TGATGACGTCGACAAGACCA+TGG - chr6_1:97947283-97947302 Msa0901320:intron 50.0%
!! GAAGCATTGTCGGCTCCAAT+TGG - chr6_1:97947347-97947366 Msa0901320:intron 50.0%
!!! TGCAGCTGCTGATTTTGACG+AGG - chr6_1:97947370-97947389 Msa0901320:intron 50.0%
ATCGGCACTGTATTGCGTGT+CGG - chr6_1:97947779-97947798 Msa0901320:intron 50.0%
GCTGCCAATTCATCTTCCTC+AGG + chr6_1:97948039-97948058 None:intergenic 50.0%
!!! CTATTTGGTTTTGCCACGGC+TGG - chr6_1:97948246-97948265 Msa0901320:intron 50.0%
CCATGTTCGATACGCAAACC+TGG + chr6_1:97948526-97948545 None:intergenic 50.0%
CCAGGTTTGCGTATCGAACA+TGG - chr6_1:97948523-97948542 Msa0901320:five_prime_UTR 50.0%
! TCTGGCGATCTGGATTGGGT+AGG + chr6_1:97942540-97942559 None:intergenic 55.0%
GGGATCTGGCGATCTGGATT+GGG + chr6_1:97942544-97942563 None:intergenic 55.0%
TGGGATCTGGCGATCTGGAT+TGG + chr6_1:97942545-97942564 None:intergenic 55.0%
GAAGTTGGGATCTGGCGATC+TGG + chr6_1:97942550-97942569 None:intergenic 55.0%
CGTTGCATAAAGGCCCCGTT+TGG + chr6_1:97943243-97943262 None:intergenic 55.0%
TTGGTACGTGGTACGGGTTC+GGG - chr6_1:97946310-97946329 Msa0901320:intron 55.0%
! CGGTACGCTATTTCGGTTCG+CGG - chr6_1:97946385-97946404 Msa0901320:intron 55.0%
TTCTGTTCCTACTCCAGCGG+CGG + chr6_1:97946716-97946735 None:intergenic 55.0%
!! TGTTTTCTGGCCACGACCCT+TGG + chr6_1:97946761-97946780 None:intergenic 55.0%
CCATTCGCGGTCTAATTCGC+CGG + chr6_1:97946904-97946923 None:intergenic 55.0%
GCGAATTAGACCGCGAATGG+AGG - chr6_1:97946904-97946923 Msa0901320:intron 55.0%
TTGAGTGGCGAACCGCGAAT+TGG + chr6_1:97946971-97946990 None:intergenic 55.0%
! GAGTCGGCTTTGCAGGAACA+GGG + chr6_1:97948017-97948036 None:intergenic 55.0%
GGCTGAGATGGCACTTTGAG+CGG - chr6_1:97948065-97948084 Msa0901320:intron 55.0%
GCTGAGATGGCACTTTGAGC+GGG - chr6_1:97948066-97948085 Msa0901320:intron 55.0%
ATGTTTGAGCAAGCCGCCGC+TGG - chr6_1:97946700-97946719 Msa0901320:intron 60.0%
CCGGCGAATTAGACCGCGAA+TGG - chr6_1:97946901-97946920 Msa0901320:intron 60.0%
!! GCGAATTGGTTCGCGCGAAC+CGG + chr6_1:97946957-97946976 None:intergenic 60.0%
GGTTCGCGCGAACCAATTCG+CGG - chr6_1:97946956-97946975 Msa0901320:intron 60.0%
CGCATCTACCGTTTCCGTGG+TGG + chr6_1:97947104-97947123 None:intergenic 60.0%
GGAGCAGGAGCTGTAGTTGC+TGG + chr6_1:97947958-97947977 None:intergenic 60.0%
TTTGCAGGAACAGGGCGTGC+AGG + chr6_1:97948009-97948028 None:intergenic 60.0%
! GGAGTCGGCTTTGCAGGAAC+AGG + chr6_1:97948018-97948037 None:intergenic 60.0%
! TCCTGCAAAGCCGACTCCTG+AGG - chr6_1:97948020-97948039 Msa0901320:intron 60.0%
! TCCTCAGGAGTCGGCTTTGC+AGG + chr6_1:97948024-97948043 None:intergenic 60.0%
GGCAGCTTTGCAGGCTGAGA+TGG - chr6_1:97948053-97948072 Msa0901320:intron 60.0%
GGCTTAAGCTAAGCCAGCCG+TGG + chr6_1:97948262-97948281 None:intergenic 60.0%
GTGGTACGGGTTCGGGTACG+CGG - chr6_1:97946317-97946336 Msa0901320:intron 65.0%
CCAGCTGGGACGTGCACTGT+GGG + chr6_1:97947979-97947998 None:intergenic 65.0%
CCACAGTGCACGTCCCAGCT+GGG - chr6_1:97947977-97947996 Msa0901320:intron 65.0%
GTGCAGGTTGCCTCCCAGCT+GGG + chr6_1:97947993-97948012 None:intergenic 65.0%
GAGCAAGCCGCCGCTGGAGT+AGG - chr6_1:97946706-97946725 Msa0901320:intron 70.0%
!! GGTTCGCGCGAACCGGTTCG+CGG + chr6_1:97946950-97946969 None:intergenic 70.0%
GGGACGTGCACTGTGGGAGC+AGG + chr6_1:97947973-97947992 None:intergenic 70.0%
CCCACAGTGCACGTCCCAGC+TGG - chr6_1:97947976-97947995 Msa0901320:intron 70.0%
CCCAGCTGGGACGTGCACTG+TGG + chr6_1:97947980-97947999 None:intergenic 70.0%
CAGTGCACGTCCCAGCTGGG+AGG - chr6_1:97947980-97947999 Msa0901320:intron 70.0%
CGTGCAGGTTGCCTCCCAGC+TGG + chr6_1:97947994-97948013 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 97942357 97948809 97942357 ID=Msa0901320;Name=Msa0901320
chr6_1 mRNA 97942357 97948809 97942357 ID=Msa0901320-mRNA-1;Parent=Msa0901320;Name=Msa0901320-mRNA-1;_AED=0.14;_eAED=0.14;_QI=319|1|1|1|0.66|0.57|7|287|220
chr6_1 exon 97942357 97942639 97942357 ID=Msa0901320-mRNA-1:exon:17194;Parent=Msa0901320-mRNA-1
chr6_1 exon 97943079 97943274 97943079 ID=Msa0901320-mRNA-1:exon:17193;Parent=Msa0901320-mRNA-1
chr6_1 exon 97943775 97943889 97943775 ID=Msa0901320-mRNA-1:exon:17192;Parent=Msa0901320-mRNA-1
chr6_1 exon 97943999 97944090 97943999 ID=Msa0901320-mRNA-1:exon:17191;Parent=Msa0901320-mRNA-1
chr6_1 exon 97944918 97945003 97944918 ID=Msa0901320-mRNA-1:exon:17190;Parent=Msa0901320-mRNA-1
chr6_1 exon 97945084 97945183 97945084 ID=Msa0901320-mRNA-1:exon:17189;Parent=Msa0901320-mRNA-1
chr6_1 exon 97948413 97948809 97948413 ID=Msa0901320-mRNA-1:exon:17188;Parent=Msa0901320-mRNA-1
chr6_1 five_prime_UTR 97948491 97948809 97948491 ID=Msa0901320-mRNA-1:five_prime_utr;Parent=Msa0901320-mRNA-1
chr6_1 CDS 97948413 97948490 97948413 ID=Msa0901320-mRNA-1:cds;Parent=Msa0901320-mRNA-1
chr6_1 CDS 97945084 97945183 97945084 ID=Msa0901320-mRNA-1:cds;Parent=Msa0901320-mRNA-1
chr6_1 CDS 97944918 97945003 97944918 ID=Msa0901320-mRNA-1:cds;Parent=Msa0901320-mRNA-1
chr6_1 CDS 97943999 97944090 97943999 ID=Msa0901320-mRNA-1:cds;Parent=Msa0901320-mRNA-1
chr6_1 CDS 97943775 97943889 97943775 ID=Msa0901320-mRNA-1:cds;Parent=Msa0901320-mRNA-1
chr6_1 CDS 97943083 97943274 97943083 ID=Msa0901320-mRNA-1:cds;Parent=Msa0901320-mRNA-1
chr6_1 three_prime_UTR 97943079 97943082 97943079 ID=Msa0901320-mRNA-1:three_prime_utr;Parent=Msa0901320-mRNA-1
chr6_1 three_prime_UTR 97942357 97942639 97942357 ID=Msa0901320-mRNA-1:three_prime_utr;Parent=Msa0901320-mRNA-1
Gene Sequence

>Msa0901320

ATGTTTACGAGAGTTTTCGGTAAACCTAAACAAGACACATCCAGCAATGCTCTTGCCACTTTAGACAAATTAAACGAGACACTAGAAATGCTCGAGAAAAAGGAAAATGTACTCCTTAAAAAGGCCGCAGCAGAAGTTGAAAAAGCCAAAGAATACACCAAAAGAAAGAACAAAAAGGCGGCAATTCAATGTTTGAAGAGGAAGAGGTTATATGAACAACAAGTTGAGCAGCTTGGTAATTTCCAGTTGCGTATTCATGACCAGATGATAATGTTAGAAGGTGCTAAAGCCACCACGGAAACGGTAGATGCGTTAAGAACAGGAGCAGCTACTATGAAGGCTATGCAGAAAGCAACAAATATTGATGACGTCGACAAGACCATGGACGAGATAAATGAACAGACCGAGAACATGAAGCAGATTCAAGAAGCATTGTCGGCTCCAATTGGTGCAGCTGCTGATTTTGACGAGGACGAACTGGAAGCAGAACTTGAAGAATTGGAGAGTGCTGAGTTGGAAGAACAGCTTCTTCAGCCAGCAACTACAGCTCCTGCTCCCACAGTGCACGTCCCAGCTGGGAGGCAACCTGCACGCCCTGTTCCTGCAAAGCCGACTCCTGAGGAAGATGAATTGGCAGCTTTGCAGGCTGAGATGGCACTTTGA

Protein sequence

>Msa0901320

MFTRVFGKPKQDTSSNALATLDKLNETLEMLEKKENVLLKKAAAEVEKAKEYTKRKNKKAAIQCLKRKRLYEQQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGAATMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSAPIGAAADFDEDELEAELEELESAELEEQLLQPATTAPAPTVHVPAGRQPARPVPAKPTPEEDELAALQAEMAL*