AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0603670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0603670 MtrunA17_Chr4g0032451 71.034 145 42 0 13 157 10 154 2.63e-69 206
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 41 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTAATTTCCCCATATCTA+TGG 0.308925 4_2:-48291788 None:intergenic
ACAAGAACATATTCTTTAGA+AGG 0.321927 4_2:+48291904 Msa0603670:three_prime_UTR
TTCACAATTACTTTCTAAAT+AGG 0.322641 4_2:-48291881 None:intergenic
GCCATAGATATGGGGAAATT+AGG 0.328183 4_2:+48291787 Msa0603670:exon
AGCATGAGAGGACGCGATTT+AGG 0.328687 4_2:-48291960 None:intergenic
TGCAGGTCCATTATGTAAAA+TGG 0.330791 4_2:+48291443 Msa0603670:CDS
GGAAGAGGATATGTCTCTTC+AGG 0.339040 4_2:+48291305 Msa0603670:CDS
GAACAACCGGAGCATCTTGC+AGG 0.385771 4_2:+48291426 Msa0603670:CDS
TGCATTAATTGCGGAACAAC+CGG 0.397610 4_2:+48291413 Msa0603670:CDS
AAGACAGAAAGCCATAGATA+TGG 0.404902 4_2:+48291777 Msa0603670:exon
GAAGAAACGGATCATATTCC+AGG 0.409810 4_2:+48291534 Msa0603670:CDS
TGAATTGATTGCAGCCGAAT+TGG 0.427925 4_2:+48291284 Msa0603670:CDS
TCTTCAGGATTCATTGAGAA+AGG 0.440370 4_2:+48291320 Msa0603670:CDS
TTAGGGATTACCAGTTAAAA+CGG 0.449452 4_2:-48289473 None:intergenic
GGTTCTCTGAGATATTTGTT+TGG 0.454082 4_2:+48291925 Msa0603670:three_prime_UTR
TTCAGAGGCGCAGAGCTACT+AGG 0.458273 4_2:-48289504 None:intergenic
TGAGATATTTGTTTGGAAAG+AGG 0.461787 4_2:+48291932 Msa0603670:three_prime_UTR
AGACATATCCTCTTCCAATT+CGG 0.468675 4_2:-48291298 None:intergenic
TGAATTTATTGAGGAAGAAA+CGG 0.471592 4_2:+48291521 Msa0603670:CDS
AATAAATAGTGGTTAAATTG+TGG 0.476337 4_2:+48291830 Msa0603670:three_prime_UTR
AGACAGAAAGCCATAGATAT+GGG 0.478143 4_2:+48291778 Msa0603670:exon
CAATATTGATGAATTTATTG+AGG 0.493374 4_2:+48291512 Msa0603670:CDS
TAGGGATTACCAGTTAAAAC+GGG 0.499942 4_2:-48289472 None:intergenic
TTCCGAGAAGTCCATGGAAA+AGG 0.505472 4_2:+48291042 Msa0603670:CDS
AATGGACCTGCAAGATGCTC+CGG 0.528367 4_2:-48291432 None:intergenic
ATTTGTCAATGAATTGTACA+TGG 0.532546 4_2:+48291602 Msa0603670:CDS
GATTGCAGCCGAATTGGAAG+AGG 0.533785 4_2:+48291290 Msa0603670:CDS
CAACATTTCCGAGAAGTCCA+TGG 0.547363 4_2:+48291036 Msa0603670:CDS
GTCAATGAATTGTACATGGA+TGG 0.549535 4_2:+48291606 Msa0603670:CDS
TGTATCTGCTACTTGTTCAG+AGG 0.584728 4_2:-48289519 None:intergenic
AAGGTATGCTGCTTTGTATG+TGG 0.584948 4_2:+48291635 Msa0603670:CDS
TGGGTGTAGGAACAAAATTG+AGG 0.593531 4_2:+48290990 Msa0603670:intron
AGTATCAAATTAAGCATGAG+AGG 0.594420 4_2:-48291972 None:intergenic
TGTACATGGATGGACAAGAA+AGG 0.594997 4_2:+48291616 Msa0603670:CDS
ATAGTGGTTAAATTGTGGAC+TGG 0.599291 4_2:+48291835 Msa0603670:three_prime_UTR
GTACATGAAAGCGAGAAAAG+AGG 0.599519 4_2:+48291476 Msa0603670:CDS
AAGTAGCAGATACAACAAGT+TGG 0.636568 4_2:+48289528 Msa0603670:five_prime_UTR
GGAGATGGATGCATTAATTG+CGG 0.639286 4_2:+48291404 Msa0603670:CDS
TTGTATGTGGAGAAGTCTAG+TGG 0.643539 4_2:+48291648 Msa0603670:CDS
GACAGAAAGCCATAGATATG+GGG 0.651329 4_2:+48291779 Msa0603670:exon
TGTATGTGGAGAAGTCTAGT+GGG 0.662396 4_2:+48291649 Msa0603670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATCTTCTATTTAAATTA+TGG - chr4_2:48290141-48290160 None:intergenic 15.0%
!! ATTAATAAAAGAGACATTTA+TGG - chr4_2:48290563-48290582 None:intergenic 15.0%
!! AAATGAAATTCTTGAAAATG+TGG + chr4_2:48290007-48290026 Msa0603670:intron 20.0%
!!! ATCATCTAAATGATCATTTT+GGG - chr4_2:48290069-48290088 None:intergenic 20.0%
!!! TATCATCTAAATGATCATTT+TGG - chr4_2:48290070-48290089 None:intergenic 20.0%
!!! TTTTGCGTTGTTATTTTATT+TGG + chr4_2:48290174-48290193 Msa0603670:intron 20.0%
!!! TTTGCGTTGTTATTTTATTT+GGG + chr4_2:48290175-48290194 Msa0603670:intron 20.0%
!!! TATAATTTTCAAACAAAGAG+AGG - chr4_2:48290276-48290295 None:intergenic 20.0%
!!! GTCTCTTTTATTAATCATTT+CGG + chr4_2:48290568-48290587 Msa0603670:intron 20.0%
!! TCAAATCACTATTTAGATTT+AGG + chr4_2:48290594-48290613 Msa0603670:intron 20.0%
!!! ACTATTTAGATTTAGGATAA+TGG + chr4_2:48290601-48290620 Msa0603670:intron 20.0%
!!! CTATTTAGATTTAGGATAAT+GGG + chr4_2:48290602-48290621 Msa0603670:intron 20.0%
!! AATTAATCATTAGCAATCAT+TGG - chr4_2:48290685-48290704 None:intergenic 20.0%
!! CATAAACTAATTCATATGTT+AGG + chr4_2:48290765-48290784 Msa0603670:intron 20.0%
!! AAATATTTATTATTGGGTGT+AGG + chr4_2:48290977-48290996 Msa0603670:intron 20.0%
!!! AAACATTTTTTTTCAAAAGC+AGG - chr4_2:48291116-48291135 None:intergenic 20.0%
!! CAATATTGATGAATTTATTG+AGG + chr4_2:48291512-48291531 Msa0603670:CDS 20.0%
!! AAAACTGTAAGAAGTTAAAA+GGG - chr4_2:48291717-48291736 None:intergenic 20.0%
!! AAAAACTGTAAGAAGTTAAA+AGG - chr4_2:48291718-48291737 None:intergenic 20.0%
!!! GTGTTTTTTCAAATAAATAG+TGG + chr4_2:48291819-48291838 Msa0603670:three_prime_UTR 20.0%
!! AATAAATAGTGGTTAAATTG+TGG + chr4_2:48291830-48291849 Msa0603670:three_prime_UTR 20.0%
!! TTCACAATTACTTTCTAAAT+AGG - chr4_2:48291884-48291903 None:intergenic 20.0%
!!! GCTGTTTTAATAAGCTATAT+TGG - chr4_2:48289811-48289830 None:intergenic 25.0%
! TATAAGTTGTTGATCAAGAA+CGG + chr4_2:48289934-48289953 Msa0603670:intron 25.0%
!! ATCGATGATAATGTTTATGT+TGG + chr4_2:48289984-48290003 Msa0603670:intron 25.0%
! GGTTAATACTGAAAATATAG+AGG + chr4_2:48290028-48290047 Msa0603670:intron 25.0%
!!! TTGCGTTGTTATTTTATTTG+GGG + chr4_2:48290176-48290195 Msa0603670:intron 25.0%
! GGTGTAAATTTAAAAGTTGA+GGG + chr4_2:48290623-48290642 Msa0603670:intron 25.0%
! GTGTAAATTTAAAAGTTGAG+GGG + chr4_2:48290624-48290643 Msa0603670:intron 25.0%
! TGTAAATTTAAAAGTTGAGG+GGG + chr4_2:48290625-48290644 Msa0603670:intron 25.0%
!!! TTTATGTTAAAAAGTATCCC+AGG - chr4_2:48290751-48290770 None:intergenic 25.0%
!!! TTTTAAGTTTGATTAGTCTG+TGG + chr4_2:48290827-48290846 Msa0603670:intron 25.0%
! AAAAAAAATGTTTCTTGCTG+TGG + chr4_2:48291123-48291142 Msa0603670:intron 25.0%
!! AAAAAAATGTTTCTTGCTGT+GGG + chr4_2:48291124-48291143 Msa0603670:intron 25.0%
!! TTAGTGACCATTTTACATAA+TGG - chr4_2:48291453-48291472 None:intergenic 25.0%
! TGAATTTATTGAGGAAGAAA+CGG + chr4_2:48291521-48291540 Msa0603670:CDS 25.0%
! ATTTGTCAATGAATTGTACA+TGG + chr4_2:48291602-48291621 Msa0603670:CDS 25.0%
! ACAAGAACATATTCTTTAGA+AGG + chr4_2:48291904-48291923 Msa0603670:three_prime_UTR 25.0%
ATTCACAACAAACATAGATC+AGG + chr4_2:48289694-48289713 Msa0603670:intron 30.0%
CATAGATCAGGAAAGTTAAA+CGG + chr4_2:48289706-48289725 Msa0603670:intron 30.0%
ACATAAGTTGTCAATAGCAT+AGG - chr4_2:48289858-48289877 None:intergenic 30.0%
GCTATTGACAACTTATGTTT+AGG + chr4_2:48289860-48289879 Msa0603670:intron 30.0%
TGATCAACAACTTATAGTCA+GGG - chr4_2:48289930-48289949 None:intergenic 30.0%
TTGATCAACAACTTATAGTC+AGG - chr4_2:48289931-48289950 None:intergenic 30.0%
!! TGTTGATGATATTGAAGATG+TGG + chr4_2:48290112-48290131 Msa0603670:intron 30.0%
!! GGCATATTTTTACTTAGAGT+CGG + chr4_2:48290197-48290216 Msa0603670:intron 30.0%
!! GCATATTTTTACTTAGAGTC+GGG + chr4_2:48290198-48290217 Msa0603670:intron 30.0%
GGGTGTAAATTTAAAAGTTG+AGG + chr4_2:48290622-48290641 Msa0603670:intron 30.0%
! CTTGTGGATGATTATTGATT+AGG + chr4_2:48290855-48290874 Msa0603670:intron 30.0%
! GGATGATTATTGATTAGGAT+CGG + chr4_2:48290860-48290879 Msa0603670:intron 30.0%
CTGATTTATGCACAATCTAT+TGG - chr4_2:48290949-48290968 None:intergenic 30.0%
AGAAGAGAATAATAAGCAAC+CGG + chr4_2:48291175-48291194 Msa0603670:intron 30.0%
AACTTGAATTTGGCTGTAAA+TGG + chr4_2:48291200-48291219 Msa0603670:intron 30.0%
!! TTACGCTACTATTTTGAAAG+AGG + chr4_2:48291383-48291402 Msa0603670:CDS 30.0%
!! TACTATTTTGAAAGAGGAGA+TGG + chr4_2:48291389-48291408 Msa0603670:CDS 30.0%
! ACAGTTTTTCTTGTCACTAT+AGG + chr4_2:48291729-48291748 Msa0603670:intron 30.0%
TGAGATATTTGTTTGGAAAG+AGG + chr4_2:48291932-48291951 Msa0603670:three_prime_UTR 30.0%
AGTATCAAATTAAGCATGAG+AGG - chr4_2:48291975-48291994 None:intergenic 30.0%
!!! GCTACTAGGTTTTGTTGTTA+GGG - chr4_2:48289493-48289512 None:intergenic 35.0%
!!! AGCTACTAGGTTTTGTTGTT+AGG - chr4_2:48289494-48289513 None:intergenic 35.0%
AAGTAGCAGATACAACAAGT+TGG + chr4_2:48289528-48289547 Msa0603670:five_prime_UTR 35.0%
GAAAATCATCATCATCATCC+AGG + chr4_2:48289559-48289578 Msa0603670:five_prime_UTR 35.0%
GTCAATAGCATAGGTTCTAT+GGG - chr4_2:48289849-48289868 None:intergenic 35.0%
TGTCAATAGCATAGGTTCTA+TGG - chr4_2:48289850-48289869 None:intergenic 35.0%
TCCATAAATCAGTATGACAG+CGG - chr4_2:48290508-48290527 None:intergenic 35.0%
AGTGACTACTTCAATACAGA+GGG - chr4_2:48290708-48290727 None:intergenic 35.0%
AAGTGACTACTTCAATACAG+AGG - chr4_2:48290709-48290728 None:intergenic 35.0%
! TGTTAGGTCACTTGTTGAAT+AGG + chr4_2:48290781-48290800 Msa0603670:intron 35.0%
! TGATATCCAATAGTGTTGCT+AGG + chr4_2:48290908-48290927 Msa0603670:intron 35.0%
! ACAGCCAAATTCAAGTTTAC+CGG - chr4_2:48291197-48291216 None:intergenic 35.0%
TGAATTTGGCTGTAAATGGA+TGG + chr4_2:48291204-48291223 Msa0603670:intron 35.0%
GAATTTGGCTGTAAATGGAT+GGG + chr4_2:48291205-48291224 Msa0603670:intron 35.0%
TGCTTACTAGAAACTGTTTG+TGG + chr4_2:48291247-48291266 Msa0603670:intron 35.0%
AGACATATCCTCTTCCAATT+CGG - chr4_2:48291301-48291320 None:intergenic 35.0%
TCTTCAGGATTCATTGAGAA+AGG + chr4_2:48291320-48291339 Msa0603670:CDS 35.0%
AAAAACCCTAAAAGAGAACG+AGG + chr4_2:48291359-48291378 Msa0603670:CDS 35.0%
! GTAAACCTCGTTCTCTTTTA+GGG - chr4_2:48291367-48291386 None:intergenic 35.0%
TGCAGGTCCATTATGTAAAA+TGG + chr4_2:48291443-48291462 Msa0603670:CDS 35.0%
! ATCTCTATTTTCAATGCACC+TGG - chr4_2:48291555-48291574 None:intergenic 35.0%
GTCAATGAATTGTACATGGA+TGG + chr4_2:48291606-48291625 Msa0603670:CDS 35.0%
AAGACAGAAAGCCATAGATA+TGG + chr4_2:48291777-48291796 Msa0603670:exon 35.0%
AGACAGAAAGCCATAGATAT+GGG + chr4_2:48291778-48291797 Msa0603670:exon 35.0%
ATAGTGGTTAAATTGTGGAC+TGG + chr4_2:48291835-48291854 Msa0603670:three_prime_UTR 35.0%
!! GGTTCTCTGAGATATTTGTT+TGG + chr4_2:48291925-48291944 Msa0603670:three_prime_UTR 35.0%
! TGTATCTGCTACTTGTTCAG+AGG - chr4_2:48289522-48289541 None:intergenic 40.0%
CGAACAGAAAAAGAGAGAAG+GGG - chr4_2:48289592-48289611 None:intergenic 40.0%
CCGAACAGAAAAAGAGAGAA+GGG - chr4_2:48289593-48289612 None:intergenic 40.0%
! CCCTTCTCTCTTTTTCTGTT+CGG + chr4_2:48289590-48289609 Msa0603670:intron 40.0%
TCCGAACAGAAAAAGAGAGA+AGG - chr4_2:48289594-48289613 None:intergenic 40.0%
ACTTATAGTCAGGGTGTGTA+TGG - chr4_2:48289921-48289940 None:intergenic 40.0%
GATCAAGAACGGTCAATTTC+AGG + chr4_2:48289945-48289964 Msa0603670:intron 40.0%
TAGAGTCGTCCCTATCAAAT+TGG - chr4_2:48290227-48290246 None:intergenic 40.0%
!! TAGGGACGACTCTATTTTGA+AGG + chr4_2:48290233-48290252 Msa0603670:intron 40.0%
!! TCCGCTGTCATACTGATTTA+TGG + chr4_2:48290504-48290523 Msa0603670:intron 40.0%
TTTATACAAGCCTATGCTCC+TGG + chr4_2:48290730-48290749 Msa0603670:intron 40.0%
TTATACAAGCCTATGCTCCT+GGG + chr4_2:48290731-48290750 Msa0603670:intron 40.0%
!! AAAAAGTATCCCAGGAGCAT+AGG - chr4_2:48290743-48290762 None:intergenic 40.0%
TTAGTCTGTGGATGTTCTTG+TGG + chr4_2:48290839-48290858 Msa0603670:intron 40.0%
CAAAAGCCTAGCAACACTAT+TGG - chr4_2:48290917-48290936 None:intergenic 40.0%
!! CAATAGTGTTGCTAGGCTTT+TGG + chr4_2:48290915-48290934 Msa0603670:intron 40.0%
TGGGTGTAGGAACAAAATTG+AGG + chr4_2:48290990-48291009 Msa0603670:intron 40.0%
GCAACCGGTAAACTTGAATT+TGG + chr4_2:48291190-48291209 Msa0603670:intron 40.0%
TGAATTGATTGCAGCCGAAT+TGG + chr4_2:48291284-48291303 Msa0603670:CDS 40.0%
! CGTAAACCTCGTTCTCTTTT+AGG - chr4_2:48291368-48291387 None:intergenic 40.0%
GGAGATGGATGCATTAATTG+CGG + chr4_2:48291404-48291423 Msa0603670:CDS 40.0%
TGCATTAATTGCGGAACAAC+CGG + chr4_2:48291413-48291432 Msa0603670:CDS 40.0%
GTACATGAAAGCGAGAAAAG+AGG + chr4_2:48291476-48291495 Msa0603670:CDS 40.0%
GAAGAAACGGATCATATTCC+AGG + chr4_2:48291534-48291553 Msa0603670:CDS 40.0%
TGTACATGGATGGACAAGAA+AGG + chr4_2:48291616-48291635 Msa0603670:CDS 40.0%
!! AAGGTATGCTGCTTTGTATG+TGG + chr4_2:48291635-48291654 Msa0603670:CDS 40.0%
TTGTATGTGGAGAAGTCTAG+TGG + chr4_2:48291648-48291667 Msa0603670:CDS 40.0%
TGTATGTGGAGAAGTCTAGT+GGG + chr4_2:48291649-48291668 Msa0603670:CDS 40.0%
! CTAGTGGGTAAGTTATACAC+TGG + chr4_2:48291664-48291683 Msa0603670:intron 40.0%
GACAGAAAGCCATAGATATG+GGG + chr4_2:48291779-48291798 Msa0603670:exon 40.0%
GCCATAGATATGGGGAAATT+AGG + chr4_2:48291787-48291806 Msa0603670:exon 40.0%
GCCTAATTTCCCCATATCTA+TGG - chr4_2:48291791-48291810 None:intergenic 40.0%
TTCCTTCCCCTTTCTCGATA+CGG + chr4_2:48289616-48289635 Msa0603670:intron 45.0%
ACGGTTGAGTAGACGATGTT+TGG + chr4_2:48289725-48289744 Msa0603670:intron 45.0%
CGGTTGAGTAGACGATGTTT+GGG + chr4_2:48289726-48289745 Msa0603670:intron 45.0%
AGTCGGGTCTCCAATTTGAT+AGG + chr4_2:48290214-48290233 Msa0603670:intron 45.0%
GTCGGGTCTCCAATTTGATA+GGG + chr4_2:48290215-48290234 Msa0603670:intron 45.0%
!! GGACGACTCTATTTTGAAGG+AGG + chr4_2:48290236-48290255 Msa0603670:intron 45.0%
TCAAACAAAGAGAGGCAGCA+AGG - chr4_2:48290268-48290287 None:intergenic 45.0%
GACAGCGGAGTATACAATCA+GGG - chr4_2:48290493-48290512 None:intergenic 45.0%
TGACAGCGGAGTATACAATC+AGG - chr4_2:48290494-48290513 None:intergenic 45.0%
TGAATCCCCTGGTTAGTAGA+TGG + chr4_2:48290654-48290673 Msa0603670:intron 45.0%
CAACATTTCCGAGAAGTCCA+TGG + chr4_2:48291036-48291055 Msa0603670:CDS 45.0%
TTCCGAGAAGTCCATGGAAA+AGG + chr4_2:48291042-48291061 Msa0603670:CDS 45.0%
! CACCTTTTCCATGGACTTCT+CGG - chr4_2:48291047-48291066 None:intergenic 45.0%
! TGTATGTCGCACCTTTTCCA+TGG - chr4_2:48291056-48291075 None:intergenic 45.0%
GGAAGAGGATATGTCTCTTC+AGG + chr4_2:48291305-48291324 Msa0603670:CDS 45.0%
!! TTATTCTAAATATTTATTAT+TGG + chr4_2:48290970-48290989 Msa0603670:intron 5.0%
!! TATTCTAAATATTTATTATT+GGG + chr4_2:48290971-48290990 Msa0603670:intron 5.0%
GAGAGAAGGGGAAACAAACC+TGG - chr4_2:48289580-48289599 None:intergenic 50.0%
TGAATTGCGCCGCATTGAAG+GGG - chr4_2:48289679-48289698 None:intergenic 50.0%
GTGAATTGCGCCGCATTGAA+GGG - chr4_2:48289680-48289699 None:intergenic 50.0%
TGTGAATTGCGCCGCATTGA+AGG - chr4_2:48289681-48289700 None:intergenic 50.0%
CAGAGCCATCTACTAACCAG+GGG - chr4_2:48290662-48290681 None:intergenic 50.0%
GCAGAGCCATCTACTAACCA+GGG - chr4_2:48290663-48290682 None:intergenic 50.0%
! CTTGCTGTGGGCAAAACTGA+AGG + chr4_2:48291136-48291155 Msa0603670:intron 50.0%
GATTGCAGCCGAATTGGAAG+AGG + chr4_2:48291290-48291309 Msa0603670:CDS 50.0%
AATGGACCTGCAAGATGCTC+CGG - chr4_2:48291435-48291454 None:intergenic 50.0%
AGCATGAGAGGACGCGATTT+AGG - chr4_2:48291963-48291982 None:intergenic 50.0%
! TTCAGAGGCGCAGAGCTACT+AGG - chr4_2:48289507-48289526 None:intergenic 55.0%
CTTCCCCTTTCTCGATACGG+CGG + chr4_2:48289619-48289638 Msa0603670:intron 55.0%
GGCAGAGCCATCTACTAACC+AGG - chr4_2:48290664-48290683 None:intergenic 55.0%
! GAACAACCGGAGCATCTTGC+AGG + chr4_2:48291426-48291445 Msa0603670:CDS 55.0%
CGCCGTATCGAGAAAGGGGA+AGG - chr4_2:48289621-48289640 None:intergenic 60.0%
TGCGCCGCCGTATCGAGAAA+GGG - chr4_2:48289626-48289645 None:intergenic 60.0%
CCGCATTGAAGGGGCGGATA+CGG - chr4_2:48289670-48289689 None:intergenic 60.0%
CCGTATCCGCCCCTTCAATG+CGG + chr4_2:48289667-48289686 Msa0603670:intron 60.0%
ATTGCGCCGCATTGAAGGGG+CGG - chr4_2:48289676-48289695 None:intergenic 60.0%
GCGCCGCCGTATCGAGAAAG+GGG - chr4_2:48289625-48289644 None:intergenic 65.0%
GTGCGCCGCCGTATCGAGAA+AGG - chr4_2:48289627-48289646 None:intergenic 65.0%
GCGCACGAGTATGCCATCGC+TGG + chr4_2:48289641-48289660 Msa0603670:intron 65.0%
GGGGGTTCGACTGAATCCCC+TGG + chr4_2:48290643-48290662 Msa0603670:intron 65.0%
GCGGATACGGCAGCCAGCGA+TGG - chr4_2:48289657-48289676 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 48289475 48292027 48289475 ID=Msa0603670;Name=Msa0603670
chr4_2 mRNA 48289475 48292027 48289475 ID=Msa0603670-mRNA-1;Parent=Msa0603670;Name=Msa0603670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=135|1|1|1|0.66|0.5|4|234|157
chr4_2 exon 48289475 48289580 48289475 ID=Msa0603670-mRNA-1:exon:11116;Parent=Msa0603670-mRNA-1
chr4_2 exon 48290999 48291063 48290999 ID=Msa0603670-mRNA-1:exon:11117;Parent=Msa0603670-mRNA-1
chr4_2 exon 48291276 48291670 48291276 ID=Msa0603670-mRNA-1:exon:11118;Parent=Msa0603670-mRNA-1
chr4_2 exon 48291751 48292027 48291751 ID=Msa0603670-mRNA-1:exon:11119;Parent=Msa0603670-mRNA-1
chr4_2 five_prime_UTR 48289475 48289580 48289475 ID=Msa0603670-mRNA-1:five_prime_utr;Parent=Msa0603670-mRNA-1
chr4_2 five_prime_UTR 48290999 48291027 48290999 ID=Msa0603670-mRNA-1:five_prime_utr;Parent=Msa0603670-mRNA-1
chr4_2 CDS 48291028 48291063 48291028 ID=Msa0603670-mRNA-1:cds;Parent=Msa0603670-mRNA-1
chr4_2 CDS 48291276 48291670 48291276 ID=Msa0603670-mRNA-1:cds;Parent=Msa0603670-mRNA-1
chr4_2 CDS 48291751 48291793 48291751 ID=Msa0603670-mRNA-1:cds;Parent=Msa0603670-mRNA-1
chr4_2 three_prime_UTR 48291794 48292027 48291794 ID=Msa0603670-mRNA-1:three_prime_utr;Parent=Msa0603670-mRNA-1
Gene Sequence

>Msa0603670

ATGAAGTTCAACATTTCCGAGAAGTCCATGGAAAAGCAAATTGATGAATTGATTGCAGCCGAATTGGAAGAGGATATGTCTCTTCAGGATTCATTGAGAAAGGTTAATGACTTGTTTATAAAAACCCTAAAAGAGAACGAGGTTTACGCTACTATTTTGAAAGAGGAGATGGATGCATTAATTGCGGAACAACCGGAGCATCTTGCAGGTCCATTATGTAAAATGGTCACTAAAATGTACATGAAAGCGAGAAAAGAGGTCAGTGAATTGTACAATATTGATGAATTTATTGAGGAAGAAACGGATCATATTCCAGGTGCATTGAAAATAGAGATGATTAAATCGTACATGAAATTGCAAAAATTTGTCAATGAATTGTACATGGATGGACAAGAAAGGTATGCTGCTTTGTATGTGGAGAAGTCTAGTGGGCTAATCAAAGACAAAACAGAAAAGCAAGACAGAAAGCCATAG

Protein sequence

>Msa0603670

MKFNISEKSMEKQIDELIAAELEEDMSLQDSLRKVNDLFIKTLKENEVYATILKEEMDALIAEQPEHLAGPLCKMVTKMYMKARKEVSELYNIDEFIEEETDHIPGALKIEMIKSYMKLQKFVNELYMDGQERYAALYVEKSSGLIKDKTEKQDRKP*