AlfalfaGEDB | Msa1205330

M. sativa cultivar zhongmu-4 / Msa1205330

KEGG: K01762
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0006082 GO:0006520 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009692 GO:0009693 GO:0009987 GO:0010817 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0019842 GO:0030170 GO:0032787 GO:0036094 GO:0042218 GO:0042445 GO:0042446 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0046983 GO:0048037 GO:0050662 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0072330 GO:0097159 GO:1900673 GO:1900674 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607
PFAM: PF00155.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1205330	XP_013457509.1	99.366	473	3	0	1	473	1	473	0.0	984

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1205330	sp\|Q00257\|1A12_CUCMA	75.884	481	102	4	1	473	1	475	0.0	768

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012790	Msa1205330	0.814590	1.425709e-51	-8.615850e-47
Msa0152640	Msa1205330	0.809549	1.791447e-50	-8.615850e-47
Msa0210790	Msa1205330	0.802407	5.692872e-49	-8.615850e-47
Msa0210850	Msa1205330	0.814117	1.814228e-51	-8.615850e-47
Msa0483820	Msa1205330	0.884496	1.824836e-71	-8.615850e-47
Msa0529360	Msa1205330	0.810467	1.136191e-50	-8.615850e-47
Msa0624930	Msa1205330	0.814183	1.754270e-51	-8.615850e-47
Msa0716700	Msa1205330	0.805013	1.638803e-49	-8.615850e-47
Msa0984310	Msa1205330	0.852094	5.783670e-61	-8.615850e-47
Msa1190610	Msa1205330	0.804042	2.612363e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1205330	MtrunA17_Chr4g0054371	99.366	473	3	0	1	473	1	473	0.0	984
Msa1205330	MtrunA17_Chr5g0400831	83.195	482	68	5	1	471	1	480	0.0	832
Msa1205330	MtrunA17_Chr3g0135251	70.139	432	122	3	3	433	1	426	0.0	657
Msa1205330	MtrunA17_Chr6g0488041	60.325	431	161	4	4	434	14	434	0.0	555
Msa1205330	MtrunA17_Chr8g0387481	55.876	451	187	4	2	450	10	450	0.0	551
Msa1205330	MtrunA17_Chr8g0389311	58.124	437	165	5	4	439	12	431	0.0	534
Msa1205330	MtrunA17_Chr8g0389321	58.124	437	165	5	4	439	12	431	0.0	534
Msa1205330	MtrunA17_Chr8g0348351	53.759	439	189	3	2	438	9	435	0.0	520
Msa1205330	MtrunA17_Chr7g0248681	53.103	435	191	3	2	434	9	432	7.57e-178	507
Msa1205330	MtrunA17_Chr6g0475681	45.517	435	225	5	4	437	104	527	3.40e-146	428

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1205330	AT4G37770.1	71.698	477	123	4	1	473	1	469	0.0	714
Msa1205330	AT3G49700.1	74.153	472	109	4	1	466	1	465	0.0	711
Msa1205330	AT5G65800.1	73.517	472	112	5	1	466	1	465	0.0	704
Msa1205330	AT2G22810.1	69.023	481	134	3	1	473	1	474	0.0	690
Msa1205330	AT4G08040.1	66.450	462	145	3	3	463	1	453	0.0	650
Msa1205330	AT4G26200.1	58.333	432	171	3	4	434	18	441	0.0	533
Msa1205330	AT3G61510.1	54.147	434	187	3	2	435	9	430	0.0	519
Msa1205330	AT1G01480.1	51.380	471	213	4	3	464	11	474	4.76e-179	511
Msa1205330	AT4G11280.1	53.118	433	194	2	1	433	12	435	5.00e-177	506
Msa1205330	AT1G01480.2	51.467	375	166	4	99	464	1	368	6.10e-140	407

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Find 90 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCCGGAATTAGCTGCT+TGG	0.561044	8_1:+61509978	Msa1205330:CDS
AAACACACACGAAACCAACC+TGG	0.602737	8_1:-61510147	None:intergenic
AAACGCAACCTTAAAGTCAA+AGG	0.585930	8_1:+61509484	Msa1205330:CDS
AAAGCAACTTGTAATAGTCA+TGG	0.582182	8_1:+61508713	Msa1205330:CDS
AACACCATTAACATTGCCAG+TGG	0.635347	8_1:-61510235	None:intergenic
AACCACATAGTTCTCACCGC+AGG	0.611056	8_1:+61509138	Msa1205330:CDS
AACCTGCGGTGAGAACTATG+TGG	0.788440	8_1:-61509140	None:intergenic
AACGTGATCAACAAGAGGAA+CGG	0.630998	8_1:+61510322	Msa1205330:CDS
AAGAAAATAGTGTACCAAGT+TGG	0.566563	8_1:+61510084	Msa1205330:CDS
ACAAACCCATCAAACCCGCT+AGG	0.648673	8_1:+61509517	Msa1205330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGCAACTTGTAATAGTCA+TGG	+	chr8_1:61508713-61508732	Msa1205330:CDS	30.0%
GATTGTGAACATTATCGTAT+GGG	-	chr8_1:61508784-61508803	None:intergenic	30.0%
GATAATGTTCACAATCCTAA+AGG	+	chr8_1:61508788-61508807	Msa1205330:CDS	30.0%
CCCATTTGAATAATTCCTTT+AGG	-	chr8_1:61508806-61508825	None:intergenic	30.0%
GATTTGATAGAGATCTTAAG+TGG	+	chr8_1:61509365-61509384	Msa1205330:intron	30.0%
ACAAATATTATCAGCGTCTT+TGG	-	chr8_1:61509707-61509726	None:intergenic	30.0%
TATAGTCTTTCCAAAGACTT+GGG	+	chr8_1:61509745-61509764	Msa1205330:CDS	30.0%
AAGAAAATAGTGTACCAAGT+TGG	+	chr8_1:61510084-61510103	Msa1205330:CDS	30.0%
GTGAAATGTTTAAACCAACT+TGG	-	chr8_1:61510101-61510120	None:intergenic	30.0%
AGAGAAATTTACTCACTAAG+TGG	+	chr8_1:61510274-61510293	Msa1205330:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	61508695	61510347	61508695	ID=Msa1205330;Name=Msa1205330
chr8_1	mRNA	61508695	61510347	61508695	ID=Msa1205330-mRNA-1;Parent=Msa1205330;Name=Msa1205330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|3\|0\|473
chr8_1	exon	61508695	61508841	61508695	ID=Msa1205330-mRNA-1:exon:19971;Parent=Msa1205330-mRNA-1
chr8_1	exon	61508952	61509244	61508952	ID=Msa1205330-mRNA-1:exon:19972;Parent=Msa1205330-mRNA-1
chr8_1	exon	61509366	61510347	61509366	ID=Msa1205330-mRNA-1:exon:19973;Parent=Msa1205330-mRNA-1
chr8_1	CDS	61508695	61508841	61508695	ID=Msa1205330-mRNA-1:cds;Parent=Msa1205330-mRNA-1
chr8_1	CDS	61508952	61509244	61508952	ID=Msa1205330-mRNA-1:cds;Parent=Msa1205330-mRNA-1
chr8_1	CDS	61509366	61510347	61509366	ID=Msa1205330-mRNA-1:cds;Parent=Msa1205330-mRNA-1

Gene Sequence

>Msa1205330

ATGAAGCTCTTGTCTACAAAAGCAACTTGTAATAGTCATGGCCAAGACTCTTCATACTTCTTAGGATGGGAAGAATACGAGAAAAACCCATACGATAATGTTCACAATCCTAAAGGAATTATTCAAATGGGTCTAGCAGAGAATCAACTCTCTTTTGATCTCTTGGAATCATGGCTAGCTAAGAATCCAGATGCATCTGGATTCAAAAGAGATGGAAAATCCATATTCCGTGAACTTGCTCTCTTCCAAGACTACCATGGCATGCCTGCATTCAAACAAGCATTGGTAGATTTCATGGCTGAAATTAGAGGAAACAAAGTTACTTTTGATCCCAACCACATAGTTCTCACCGCAGGTTCTACTTCAGCAAATGAGACTCTTATGTTTTGTCTTGCCGAGAAAGGAGAAGCATTCCTCCTTCCTACTCCTTATTATCCAGGATTTGATAGAGATCTTAAGTGGAGAACTGGTGTTGAGATTGTTCCAATACATTGCACAAGCTCCAACAACTTTCAAGTAACCGAACAAGCATTGCAACAAGCATACCAAGATGCACAAAAACGCAACCTTAAAGTCAAAGGAGTAATGGTTACAAACCCATCAAACCCGCTAGGCACCACAATGTCAAGGAGTGAATTAAATCTTCTCGTTGACTTTATCAAAGAAAACAAAGACATGCATTTGATAAGCGACGAGATTTACTCCGGCACTGTTTTTTCCTCTCCAAATTTCATCAGCGTCATGGAAATTCTTAAAGACAGAAATGACTTTAACGACTCCAAAGACGCTGATAATATTTGTGAGAGAGTTCATGTTGTCTATAGTCTTTCCAAAGACTTGGGTTTGCCAGGTTTCCGTGTTGGTGCCATCTACTCCGAAAATGATACGGTTGTTGCTGCTGCCACGAAGATGTCAAGCTTCGGCTTAATCTCGTCGCAAACACAATACCTTCTTTCCGCCATGCTTGGTGACAAAAAATTCACCAAAAACTACTTAGCTGAAAACTTAAAGAGACTTAAGAAACGTCAGAACAAGCTTGTTTCGGGTTTACAAAAAGCCGGAATTAGCTGCTTGGAAAGCAATGCAGGATTATTTTGTTGGGTTGATATGAGGCATCTTCTCCATTCCAACACATTTGAAGCTGAAATGGAACTATGGAAGAAAATAGTGTACCAAGTTGGTTTAAACATTTCACCTGGTTCATCTTGTCATTGTACAGAACCAGGTTGGTTTCGTGTGTGTTTCGCAAACATGTCAGAAGAGACTTTGAAACTAGCAATGAAAAGGTTGAAAGCTTTCGTTGTTGAGTCCACTGGCAATGTTAATGGTGTTACAACAAAAAGCACAAAGAGAAATTTACTCACTAAGTGGGTTTTTCGGTTATCGTCTCGTGATCAACGTGATCAACAAGAGGAACGGTAA

Protein sequence

>Msa1205330

MKLLSTKATCNSHGQDSSYFLGWEEYEKNPYDNVHNPKGIIQMGLAENQLSFDLLESWLAKNPDASGFKRDGKSIFRELALFQDYHGMPAFKQALVDFMAEIRGNKVTFDPNHIVLTAGSTSANETLMFCLAEKGEAFLLPTPYYPGFDRDLKWRTGVEIVPIHCTSSNNFQVTEQALQQAYQDAQKRNLKVKGVMVTNPSNPLGTTMSRSELNLLVDFIKENKDMHLISDEIYSGTVFSSPNFISVMEILKDRNDFNDSKDADNICERVHVVYSLSKDLGLPGFRVGAIYSENDTVVAAATKMSSFGLISSQTQYLLSAMLGDKKFTKNYLAENLKRLKKRQNKLVSGLQKAGISCLESNAGLFCWVDMRHLLHSNTFEAEMELWKKIVYQVGLNISPGSSCHCTEPGWFRVCFANMSEETLKLAMKRLKAFVVESTGNVNGVTTKSTKRNLLTKWVFRLSSRDQRDQQEER*