AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0529360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529360 MtrunA17_Chr4g0011301 98.910 734 7 1 2 735 3 735 0.0 1495
Msa0529360 MtrunA17_Chr1g0213271 87.611 678 84 0 57 734 57 734 0.0 1250
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529360 AT2G45290.1 79.139 743 145 3 1 735 1 741 0.0 1221
Msa0529360 AT2G45290.2 79.139 743 145 3 1 735 1 741 0.0 1221
Msa0529360 AT3G60750.1 78.706 742 150 3 1 735 1 741 0.0 1204
Msa0529360 AT3G60750.2 78.706 742 149 4 1 735 1 740 0.0 1201

Find 235 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTGGGTGGCATGTTATT+TGG 0.165907 4_1:-2851139 Msa0529360:CDS
TTAAACCAAAACGGATTCTT+TGG 0.234233 4_1:+2853035 None:intergenic
TCTTGTGGCATCAACTTCTT+TGG 0.239047 4_1:+2850454 None:intergenic
TTCTATAGGTATTGTATATT+GGG 0.257909 4_1:-2851320 Msa0529360:intron
TTTCTATAGGTATTGTATAT+TGG 0.260478 4_1:-2851321 Msa0529360:intron
TGGGAGTTGGTGTGCGGTTG+AGG 0.264114 4_1:+2853288 None:intergenic
TACACTGAACCAGTCCTCTT+TGG 0.274918 4_1:-2853596 Msa0529360:five_prime_UTR
GAGTTGTTTCCTTTGTTTCT+TGG 0.277523 4_1:-2849310 Msa0529360:CDS
TATGCTTTGCTTCATCTTGC+TGG 0.279540 4_1:-2852966 Msa0529360:CDS
GGATTGAGAGAGGTGGGTGG+TGG 0.281918 4_1:+2853268 None:intergenic
TTGTTGCTTGAATAAGAAAA+AGG 0.308078 4_1:-2848946 Msa0529360:three_prime_UTR
CTGTAGGAGTTGGATTTATT+CGG 0.309810 4_1:+2850500 None:intergenic
AGTTGTTTCCTTTGTTTCTT+GGG 0.312843 4_1:-2849309 Msa0529360:CDS
ACTCTCAGTGAACGCGATTT+CGG 0.313774 4_1:+2851181 None:intergenic
ACTTGGGTGGCATGTTATTT+GGG 0.323384 4_1:-2851138 Msa0529360:CDS
GGACGGAGCATCAAGATATT+TGG 0.327899 4_1:+2849590 None:intergenic
ACAAAGTTGCGGTGCTTAAC+AGG 0.328102 4_1:-2849538 Msa0529360:CDS
CCAGGAGTTTCAAAATTCTC+AGG 0.328165 4_1:+2851729 None:intergenic
GCAATCGGCATTGATCGTTT+TGG 0.329334 4_1:-2849161 Msa0529360:CDS
AATGAAGCTTGCTCACTTGC+AGG 0.330765 4_1:-2851269 Msa0529360:CDS
TAGAGCACCTGGCAAGCTTC+CGG 0.331331 4_1:-2849619 Msa0529360:CDS
GTTGCATCGGCAGGGATCTC+TGG 0.332471 4_1:+2850004 None:intergenic
GAACATTCGCAAGGGCATTA+AGG 0.334104 4_1:+2849960 None:intergenic
TCGCAGTTCACAACAACTAT+TGG 0.337717 4_1:-2850533 Msa0529360:intron
TGAAATTCGTGCTGCCATTA+AGG 0.343448 4_1:-2851090 Msa0529360:CDS
ATTGAGGCCGGATCAACATT+TGG 0.346424 4_1:-2849215 Msa0529360:CDS
GATCGGAACCGGTTCCGAAT+TGG 0.348733 4_1:-2849384 Msa0529360:CDS
GCCCTTGCGAATGTTCTTCC+CGG 0.361812 4_1:-2849953 Msa0529360:CDS
CCGTTTCCTCGCGGTTGATT+CGG 0.361888 4_1:-2853147 Msa0529360:CDS
CGGTTGAGGGTGATGGTGGA+TGG 0.367254 4_1:+2853302 None:intergenic
GGGAGTTGGTGTGCGGTTGA+GGG 0.367811 4_1:+2853289 None:intergenic
TGCAATTTCCAATTCGGAAC+CGG 0.369729 4_1:+2849376 None:intergenic
TTCACAACAACTATTGGTTA+TGG 0.371247 4_1:-2850527 Msa0529360:CDS
CGGTGTGGCGAAGGTGGTGG+TGG 0.373360 4_1:+2853246 None:intergenic
ACCTATGGGTTGTGCTCCAA+TGG 0.375675 4_1:-2853093 Msa0529360:CDS
TTTGTATGCAATTTCCAATT+CGG 0.377921 4_1:+2849370 None:intergenic
TTCTATTGAAGGAGTTGAAA+AGG 0.389406 4_1:-2849459 Msa0529360:CDS
GCATTGCCCGGAAGCTTGCC+AGG 0.390101 4_1:+2849612 None:intergenic
TCAAAATTCTCAGGGTGTCC+AGG 0.392747 4_1:+2851738 None:intergenic
CTCCCACCCAAATGTTGATC+CGG 0.393379 4_1:+2849208 None:intergenic
GAGAGGTGGGTGGTGGGAGT+TGG 0.393613 4_1:+2853275 None:intergenic
ATAATCCAAAGAATCCGTTT+TGG 0.393724 4_1:-2853040 Msa0529360:CDS
AATGTTCTTCCCGGTCTGAT+TGG 0.393930 4_1:-2849944 Msa0529360:CDS
GGGTCATCCTGGTTTACCTA+TGG 0.396435 4_1:-2853108 Msa0529360:CDS
GGAACAATATACAAAGAGTT+TGG 0.397042 4_1:-2849122 Msa0529360:CDS
GGATGTGAGGCGCGTAAGAT+TGG 0.402805 4_1:+2853355 None:intergenic
AACTCCTTCAATAGAAGTTC+CGG 0.404053 4_1:+2849466 None:intergenic
AGAGCACCTGGCAAGCTTCC+GGG 0.404549 4_1:-2849618 Msa0529360:CDS
TGGCGATTTACCTGCTGGTT+GGG 0.404773 4_1:-2850175 Msa0529360:CDS
ATTGTCGGGCTTGTTAAATC+TGG 0.405666 4_1:+2851451 None:intergenic
ACACTGAACCAGTCCTCTTT+GGG 0.406577 4_1:-2853595 Msa0529360:five_prime_UTR
GCAGAGCGTAACGTTAGATT+TGG 0.407664 4_1:-2849848 Msa0529360:CDS
CATGTTATTTGGGTAAAGAA+TGG 0.408155 4_1:-2851128 Msa0529360:CDS
CCTGTTGTGACTTCAATTCC+AGG 0.410667 4_1:+2851711 None:intergenic
AGGTTTCGGGTTGCATCGGC+AGG 0.411643 4_1:+2849995 None:intergenic
GTTGGTGAGAGAGAGGGAAG+TGG 0.411984 4_1:+2853379 None:intergenic
ATTTGAAGCAATTTCGTCAA+TGG 0.412981 4_1:-2851773 Msa0529360:CDS
TGGTGTGCGGTTGAGGGTGA+TGG 0.422708 4_1:+2853295 None:intergenic
CTTGCAGGACACTGGGGACT+AGG 0.424166 4_1:-2851254 Msa0529360:CDS
CCCTACTGCTGTTACGGCTA+GGG 0.425285 4_1:-2849243 Msa0529360:CDS
TTGAGGCCGGATCAACATTT+GGG 0.425486 4_1:-2849214 Msa0529360:CDS
GACATATATAACACCGGCTT+CGG 0.430122 4_1:+2849694 None:intergenic
AAGAGAGGCGCGTGGTGGAT+GGG 0.430849 4_1:+2853330 None:intergenic
TTTGAAGCAATTTCGTCAAT+GGG 0.431071 4_1:-2851772 Msa0529360:CDS
GATGTGAGGCGCGTAAGATT+GGG 0.432115 4_1:+2853356 None:intergenic
TGGTTGGGAGAAAGCACTTC+CGG 0.437142 4_1:-2850160 Msa0529360:intron
TCTAGAAAGGGCAAGGATAG+AGG 0.439993 4_1:+2849508 None:intergenic
TTTGGGTGGGAGAAAATTGT+TGG 0.440087 4_1:-2849197 Msa0529360:CDS
GTGGGATTGAGAGAGGTGGG+TGG 0.440439 4_1:+2853265 None:intergenic
AGAGAGGCGCGTGGTGGATG+GGG 0.442811 4_1:+2853331 None:intergenic
AAGCTTGCCAGGTGCTCTAT+AGG 0.443449 4_1:+2849623 None:intergenic
TATAACACCGGCTTCGGATA+GGG 0.445320 4_1:+2849700 None:intergenic
GGCACGTGGAAAGGCTCATA+TGG 0.445479 4_1:+2850416 None:intergenic
GACAATCACATTTCTATTGA+CGG 0.446265 4_1:-2851209 Msa0529360:CDS
TGGCGGTGTGGCGAAGGTGG+TGG 0.446569 4_1:+2853243 None:intergenic
TGCTGGATATGACAGTGTTC+AGG 0.446747 4_1:-2852949 Msa0529360:intron
GGTCATCCTGGTTTACCTAT+GGG 0.448870 4_1:-2853107 Msa0529360:CDS
GAAAATGAGAGAAAATGAAA+AGG 0.452077 4_1:+2853445 None:intergenic
AATCTAACGTTACGCTCTGC+TGG 0.452620 4_1:+2849851 None:intergenic
ACTACATGCGTGGTGCCATT+AGG 0.453398 4_1:-2849730 Msa0529360:CDS
CCGAATCAACCGCGAGGAAA+CGG 0.453858 4_1:+2853147 None:intergenic
TCCCTACTGCTGTTACGGCT+AGG 0.455024 4_1:-2849244 Msa0529360:CDS
ATAGAAGTTCCGGCAAGGTT+AGG 0.455709 4_1:+2849476 None:intergenic
CAGCTAAGTGCTTCTCGGCA+AGG 0.459461 4_1:+2851474 None:intergenic
ATATAACACCGGCTTCGGAT+AGG 0.459608 4_1:+2849699 None:intergenic
TTGATATATCTACACAGAAA+AGG 0.459943 4_1:-2848988 Msa0529360:three_prime_UTR
TGTTCTCCCTACTGCTGTTA+CGG 0.460415 4_1:-2849249 Msa0529360:CDS
ATCGTCTCTGACAACTCAAC+AGG 0.465225 4_1:-2849428 Msa0529360:CDS
GATTGAGAGAGGTGGGTGGT+GGG 0.466182 4_1:+2853269 None:intergenic
TCTTTGTATATTGTTCCTGC+AGG 0.467549 4_1:+2849128 None:intergenic
TGCACTGCCGCCAATCAGAC+CGG 0.471254 4_1:+2849934 None:intergenic
TGCTCTATAGGCTGGTGGGT+TGG 0.475899 4_1:+2849635 None:intergenic
CCTATGGGTTGTGCTCCAAT+GGG 0.477027 4_1:-2853092 Msa0529360:CDS
ATTGGGTGATGGTTGTCAAA+TGG 0.477289 4_1:-2851303 Msa0529360:CDS
ATCAGTGGCGATTTACCTGC+TGG 0.477834 4_1:-2850180 Msa0529360:CDS
CTTGCTCACTTGCAGGACAC+TGG 0.478425 4_1:-2851262 Msa0529360:CDS
GATTGGGGTTGGTGAGAGAG+AGG 0.479684 4_1:+2853372 None:intergenic
GGATGGCGGTGTGGCGAAGG+TGG 0.479760 4_1:+2853240 None:intergenic
TCTGGCAGCTAAGTGCTTCT+CGG 0.480707 4_1:+2851469 None:intergenic
GAAGAGAGGCGCGTGGTGGA+TGG 0.482024 4_1:+2853329 None:intergenic
GTGGTGGGATTGAGAGAGGT+GGG 0.482144 4_1:+2853262 None:intergenic
GAGCAGCACCCTCACGGATG+TGG 0.483979 4_1:+2850280 None:intergenic
CTTGCCGGAACTTCTATTGA+AGG 0.488516 4_1:-2849470 Msa0529360:CDS
CAAAATTCTCAGGGTGTCCA+GGG 0.491690 4_1:+2851739 None:intergenic
CATGGATGGCGGTGTGGCGA+AGG 0.493638 4_1:+2853237 None:intergenic
CAGGGAATTGCCAATGCTGT+TGG 0.494279 4_1:-2851503 Msa0529360:CDS
CCAGGTGCTCTATAGGCTGG+TGG 0.494759 4_1:+2849630 None:intergenic
TCTATTGAAGGAGTTGAAAA+GGG 0.494796 4_1:-2849458 Msa0529360:CDS
TTGCTCACTTGCAGGACACT+GGG 0.494803 4_1:-2851261 Msa0529360:CDS
GGTTGAGGGTGATGGTGGAT+GGG 0.495802 4_1:+2853303 None:intergenic
TCAAGATATTTGGCATTGCC+CGG 0.496204 4_1:+2849600 None:intergenic
TGAACAATCACAAGCTTACA+AGG 0.497028 4_1:-2849276 Msa0529360:CDS
GTTCCGATCAAAATGACATC+AGG 0.497616 4_1:+2849398 None:intergenic
GATGAGTCTGTGGTGGTTGA+CGG 0.498454 4_1:+2853197 None:intergenic
TGATATATCTACACAGAAAA+GGG 0.500091 4_1:-2848987 Msa0529360:three_prime_UTR
AAAGCAAATTCGGGTCATCC+TGG 0.501100 4_1:-2853119 Msa0529360:CDS
TTGCAGGACACTGGGGACTA+GGG 0.502548 4_1:-2851253 Msa0529360:CDS
GATGCCACAAGAAACAATCT+TGG 0.505359 4_1:-2850443 Msa0529360:CDS
CCTGGAATTGAAGTCACAAC+AGG 0.506192 4_1:-2851711 Msa0529360:intron
GTGGCGATTTACCTGCTGGT+TGG 0.506566 4_1:-2850176 Msa0529360:CDS
GTTCTTCCCGGTCTGATTGG+CGG 0.506753 4_1:-2849941 Msa0529360:CDS
GGATAGGGCGGAAAGCCTAA+TGG 0.509150 4_1:+2849715 None:intergenic
ATGATCGATGATCTCATTGT+CGG 0.510675 4_1:+2851436 None:intergenic
TTGCCAGGTGCTCTATAGGC+TGG 0.512357 4_1:+2849627 None:intergenic
GCTCTGCTGGAGAATCACTT+TGG 0.513151 4_1:+2849864 None:intergenic
TTGATGCTCCGTCCCGCTGA+TGG 0.513801 4_1:-2849581 Msa0529360:CDS
GAGGCGCGTGGTGGATGGGG+AGG 0.514640 4_1:+2853334 None:intergenic
ACATCCTCGGGCACGTGGAA+AGG 0.514742 4_1:+2850407 None:intergenic
CAGGAGTTTCAAAATTCTCA+GGG 0.514921 4_1:+2851730 None:intergenic
TGGTGTTAGAGAACATGGAA+TGG 0.515232 4_1:-2849828 Msa0529360:CDS
CCATCCAAGATTGTTTCTTG+TGG 0.515955 4_1:+2850439 None:intergenic
TCCATGCACACTGTAGGAGT+TGG 0.516035 4_1:+2850490 None:intergenic
TCAATAGGACTTGGAGAGGA+TGG 0.517033 4_1:-2849659 Msa0529360:CDS
GCTGATGGTAACGAAACAGC+TGG 0.517357 4_1:-2849566 Msa0529360:CDS
GGTGGTGGGATTGAGAGAGG+TGG 0.517555 4_1:+2853261 None:intergenic
AAACTAACCTTGATCAATGT+GGG 0.518234 4_1:+2851044 None:intergenic
CGATAGGTTTCGGGTTGCAT+CGG 0.518470 4_1:+2849991 None:intergenic
AGCTAAGTGCTTCTCGGCAA+GGG 0.519362 4_1:+2851475 None:intergenic
GTCATGACTCACGATTCAAT+AGG 0.519509 4_1:-2849674 Msa0529360:CDS
AGATTTGGTGTTAGAGAACA+TGG 0.524137 4_1:-2849833 Msa0529360:CDS
TGCAGAGACGGATGCATGGA+TGG 0.524550 4_1:+2853223 None:intergenic
AGCTGTTTCGTTACCATCAG+CGG 0.524817 4_1:+2849568 None:intergenic
GGTGAGGATCTAAGAAAAGA+AGG 0.525397 4_1:-2849344 Msa0529360:CDS
GGTGTGGCGAAGGTGGTGGT+GGG 0.526359 4_1:+2853247 None:intergenic
GGTGTTAGAGAACATGGAAT+GGG 0.527853 4_1:-2849827 Msa0529360:CDS
GGAAGCAAAGGAAAAGCAAT+CGG 0.531510 4_1:-2849176 Msa0529360:CDS
CAGGTGCTCTATAGGCTGGT+GGG 0.534576 4_1:+2849631 None:intergenic
TGATCGATGATCTCATTGTC+GGG 0.535264 4_1:+2851437 None:intergenic
ACCCTAGCCGTAACAGCAGT+AGG 0.537823 4_1:+2849242 None:intergenic
CAATGGGAGAGCAGAACCCC+TGG 0.538408 4_1:-2851756 Msa0529360:CDS
GGGTGATGGTTGTCAAATGG+AGG 0.538756 4_1:-2851300 Msa0529360:CDS
ATTGGGGTTGGTGAGAGAGA+GGG 0.541347 4_1:+2853373 None:intergenic
TTGGAAATTGCATACAAAGC+TGG 0.542667 4_1:-2849365 Msa0529360:CDS
TGTGCGGTTGAGGGTGATGG+TGG 0.544885 4_1:+2853298 None:intergenic
CCACCAGCCTATAGAGCACC+TGG 0.545054 4_1:-2849630 Msa0529360:CDS
TTTCCAGGTCCTCTTGGTCA+GGG 0.546176 4_1:-2851521 Msa0529360:intron
TCCAACTCCTACAGTGTGCA+TGG 0.548707 4_1:-2850491 Msa0529360:CDS
GCTGTTTCGTTACCATCAGC+GGG 0.548747 4_1:+2849569 None:intergenic
CGATCACGGTTAAACCAAAA+CGG 0.549172 4_1:+2853026 None:intergenic
CTGATGGTAACGAAACAGCT+GGG 0.549365 4_1:-2849565 Msa0529360:CDS
AGTGCTTTCTCCCAACCAGC+AGG 0.552628 4_1:+2850165 None:intergenic
AGACAGACCCACATTGATCA+AGG 0.553564 4_1:-2851051 Msa0529360:intron
GGGTGGTGGGAGTTGGTGTG+CGG 0.554134 4_1:+2853282 None:intergenic
ATTGAAGGAGTTGAAAAGGG+TGG 0.558611 4_1:-2849455 Msa0529360:CDS
TATTATTGACTTCAATAATG+TGG 0.558731 4_1:+2848812 None:intergenic
GAGAAAATTGTTGGAAGCAA+AGG 0.558787 4_1:-2849188 Msa0529360:CDS
CTTTCCGCCCTATCCGAAGC+CGG 0.562775 4_1:-2849707 Msa0529360:CDS
GCACTGCCGCCAATCAGACC+GGG 0.567223 4_1:+2849935 None:intergenic
CTAGAAAGGGCAAGGATAGA+GGG 0.568237 4_1:+2849509 None:intergenic
AAAACTAACCTTGATCAATG+TGG 0.568500 4_1:+2851043 None:intergenic
GGTGGTGGTGGGATTGAGAG+AGG 0.569527 4_1:+2853258 None:intergenic
GGTTGACGGCGGTGCAGAGA+CGG 0.570769 4_1:+2853211 None:intergenic
GGCATCGCTCTTCACAGCCG+TGG 0.571825 4_1:-2849791 Msa0529360:CDS
AAGGGCTAAACCAACAGCAT+TGG 0.572159 4_1:+2851493 None:intergenic
TGGTGGATGGGGAGGATGTG+AGG 0.572558 4_1:+2853342 None:intergenic
AAAGGAGAAAGAGAAAGTGA+AGG 0.574240 4_1:+2853463 None:intergenic
TACGGCTAGGGTTAGCATTG+AGG 0.580836 4_1:-2849231 Msa0529360:CDS
GGCCGGATCAACATTTGGGT+GGG 0.583663 4_1:-2849210 Msa0529360:CDS
GGTTGTCGCCCAAAGAGGAC+TGG 0.584007 4_1:+2853587 None:intergenic
TTTGGAGCTAGTGCTCCTGC+AGG 0.584179 4_1:-2849143 Msa0529360:CDS
AGGTATTGTATATTGGGTGA+TGG 0.586628 4_1:-2851314 Msa0529360:CDS
AGGCCGGATCAACATTTGGG+TGG 0.586804 4_1:-2849211 Msa0529360:CDS
AGTGTGCATGGAAGTGCACT+TGG 0.588131 4_1:-2850479 Msa0529360:CDS
CCCTAGCCGTAACAGCAGTA+GGG 0.588657 4_1:+2849243 None:intergenic
ATGTGAGGCGCGTAAGATTG+GGG 0.595709 4_1:+2853357 None:intergenic
GCGGTGCAGAGACGGATGCA+TGG 0.596159 4_1:+2853219 None:intergenic
GTTGAGGTTGTCGCCCAAAG+AGG 0.597888 4_1:+2853582 None:intergenic
TGGGTAAAGAATGGAAACAC+TGG 0.598152 4_1:-2851119 Msa0529360:CDS
GACCGGGAAGAACATTCGCA+AGG 0.598309 4_1:+2849951 None:intergenic
TCGTAAAGCACATGACCCAT+TGG 0.600547 4_1:+2853077 None:intergenic
ACTGATGATAGATTTCAAAA+CGG 0.601423 4_1:+2850197 None:intergenic
ACTCACGATTCAATAGGACT+TGG 0.606593 4_1:-2849668 Msa0529360:CDS
CCACAAGAAACAATCTTGGA+TGG 0.609450 4_1:-2850439 Msa0529360:CDS
GGTGATGGTTGTCAAATGGA+GGG 0.610444 4_1:-2851299 Msa0529360:CDS
TTTCGTTACCATCAGCGGGA+CGG 0.613718 4_1:+2849573 None:intergenic
TGGAGTCGCCACATCCGTGA+GGG 0.615343 4_1:-2850288 Msa0529360:CDS
AATGGCACCACGCATGTAGT+CGG 0.615519 4_1:+2849733 None:intergenic
CAGACAAAACAAACCGATCA+CGG 0.616101 4_1:+2853012 None:intergenic
TGAGCCTTTCCACGTGCCCG+AGG 0.617304 4_1:-2850411 Msa0529360:CDS
CACAGTATGGAATAAGTCCA+CGG 0.620236 4_1:+2849774 None:intergenic
GGGTCATGTGCTTTACGATG+AGG 0.622580 4_1:-2853072 Msa0529360:CDS
ATTCAAGAGCAGCACCCTCA+CGG 0.624321 4_1:+2850274 None:intergenic
GCTAGGGTTAGCATTGAGGC+CGG 0.626913 4_1:-2849227 Msa0529360:CDS
ACCGGGAAGAACATTCGCAA+GGG 0.627406 4_1:+2849952 None:intergenic
GCACAACCCATAGGTAAACC+AGG 0.634013 4_1:+2853101 None:intergenic
CGATTCAATAGGACTTGGAG+AGG 0.636047 4_1:-2849663 Msa0529360:CDS
GGATCTAAGAAAAGAAGGAA+AGG 0.637691 4_1:-2849339 Msa0529360:CDS
TGAATATGAAAAGAAGTACA+AGG 0.638110 4_1:-2850229 Msa0529360:CDS
GGTTTCGGGTTGCATCGGCA+GGG 0.640091 4_1:+2849996 None:intergenic
AGCTGGGGCATACAAAGTTG+CGG 0.643142 4_1:-2849549 Msa0529360:CDS
TTGGAGTCGCCACATCCGTG+AGG 0.643540 4_1:-2850289 Msa0529360:CDS
GTGCTGCTCTTGAATCTGAG+TGG 0.643988 4_1:-2850266 Msa0529360:CDS
CCCATTGGAGCACAACCCAT+AGG 0.646724 4_1:+2853092 None:intergenic
GGAATGGGAGCAATCAGCAA+TGG 0.647795 4_1:-2849812 Msa0529360:CDS
AACACCGGCTTCGGATAGGG+CGG 0.647980 4_1:+2849703 None:intergenic
TTGGCAATTCCCTGACCAAG+AGG 0.649608 4_1:+2851512 None:intergenic
AATTGCATACAAAGCTGGTG+AGG 0.649789 4_1:-2849360 Msa0529360:CDS
GAGGCGCGTAAGATTGGGGT+TGG 0.650059 4_1:+2853361 None:intergenic
TGCTCACTTGCAGGACACTG+GGG 0.650590 4_1:-2851260 Msa0529360:CDS
CTTCAATAGAAGTTCCGGCA+AGG 0.650965 4_1:+2849471 None:intergenic
GAGAGAAGAGAGGCGCGTGG+TGG 0.652623 4_1:+2853325 None:intergenic
AAAATTCTCAGGGTGTCCAG+GGG 0.654764 4_1:+2851740 None:intergenic
TGGTGGATGGGAGAGAAGAG+AGG 0.660150 4_1:+2853315 None:intergenic
CAACACGATCCGTTTCCTCG+CGG 0.662318 4_1:-2853156 Msa0529360:CDS
TGGGAGAGAAGAGAGGCGCG+TGG 0.663504 4_1:+2853322 None:intergenic
CTCAACGAGAGATGAGTCTG+TGG 0.664640 4_1:+2853187 None:intergenic
TGCACTTCCATGCACACTGT+AGG 0.666970 4_1:+2850484 None:intergenic
TGATGGTAACGAAACAGCTG+GGG 0.671680 4_1:-2849564 Msa0529360:CDS
CGGATGCATGGATGGCGGTG+TGG 0.677388 4_1:+2853231 None:intergenic
GAGTCTGTGGTGGTTGACGG+CGG 0.687375 4_1:+2853200 None:intergenic
AACGAGAGATGAGTCTGTGG+TGG 0.691080 4_1:+2853190 None:intergenic
AGTCATGACATATATAACAC+CGG 0.699940 4_1:+2849688 None:intergenic
AGAGACGGATGCATGGATGG+CGG 0.734321 4_1:+2853226 None:intergenic
TTTCAACCGAATCAACCGCG+AGG 0.765803 4_1:+2853141 None:intergenic
ATATGAAAAGAAGTACAAGG+AGG 0.782536 4_1:-2850226 Msa0529360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTAAAACAATATTTATTT+TGG + chr4_1:2851420-2851439 None:intergenic 10.0%
!!! TATTTTCTATTTTCATGATT+AGG - chr4_1:2850723-2850742 Msa0529360:intron 15.0%
!!! TTTTTAATAATCTTTACATG+TGG - chr4_1:2852242-2852261 Msa0529360:intron 15.0%
!! GTAAGACAAAAAAATTATCT+GGG - chr4_1:2849428-2849447 Msa0529360:CDS 20.0%
!!! ACTTTTGTGTTTTTTGTTAT+TGG - chr4_1:2849478-2849497 Msa0529360:CDS 20.0%
!!! TTTTTGCTGTTTTAGTTTTT+TGG - chr4_1:2849509-2849528 Msa0529360:CDS 20.0%
!!! ATTTTAGATTGAATTTGTGT+CGG - chr4_1:2849982-2850001 Msa0529360:CDS 20.0%
!!! GAAACATTATTTCTTAAAGT+AGG + chr4_1:2850183-2850202 None:intergenic 20.0%
!!! TGTTTTTGATCTTTGATTTA+TGG - chr4_1:2850464-2850483 Msa0529360:CDS 20.0%
!!! GTTTTTGATCTTTGATTTAT+GGG - chr4_1:2850465-2850484 Msa0529360:CDS 20.0%
!!! TATTTATTTGCCTTTTCTTT+TGG - chr4_1:2850499-2850518 Msa0529360:CDS 20.0%
!!! TTTGTTTTGGTTTGAATTTT+AGG - chr4_1:2850553-2850572 Msa0529360:intron 20.0%
!!! TTACAATACTTGTTTTCTAT+AGG - chr4_1:2851021-2851040 Msa0529360:intron 20.0%
!!! TTTCTATAGGTATTGTATAT+TGG - chr4_1:2851034-2851053 Msa0529360:intron 20.0%
!!! TTCTATAGGTATTGTATATT+GGG - chr4_1:2851035-2851054 Msa0529360:intron 20.0%
!!! AATATTTATTTTGGAACTGA+GGG + chr4_1:2851411-2851430 None:intergenic 20.0%
!! CATTAATTTAGGAGTAAAAT+TGG + chr4_1:2851487-2851506 None:intergenic 20.0%
!! TTCAGTAAAATAAATCACAT+TGG + chr4_1:2851675-2851694 None:intergenic 20.0%
!!! TATTATTGACTTCAATAATG+TGG + chr4_1:2853546-2853565 None:intergenic 20.0%
!!! ATCATTTTGATTTTGCAGTT+TGG + chr4_1:2848862-2848881 None:intergenic 25.0%
! GAAAATGAGAGAAAATGAAA+AGG + chr4_1:2848913-2848932 None:intergenic 25.0%
! GGTAAGACAAAAAAATTATC+TGG - chr4_1:2849427-2849446 Msa0529360:CDS 25.0%
! ACAAAAAAATTATCTGGGTT+GGG - chr4_1:2849433-2849452 Msa0529360:CDS 25.0%
!! TTTTAGATTGAATTTGTGTC+GGG - chr4_1:2849983-2850002 Msa0529360:CDS 25.0%
!! AAATAATGTTTCTGTTGTTG+TGG - chr4_1:2850191-2850210 Msa0529360:CDS 25.0%
!! AATAATGTTTCTGTTGTTGT+GGG - chr4_1:2850192-2850211 Msa0529360:CDS 25.0%
!! TATGAAAAGAGTGTAGTATT+AGG - chr4_1:2850434-2850453 Msa0529360:CDS 25.0%
!!! GAAGTGTTGTTATTTTGTTT+TGG - chr4_1:2850540-2850559 Msa0529360:intron 25.0%
! ATTAAACTGAAACTCATAAC+AGG + chr4_1:2850696-2850715 None:intergenic 25.0%
!!! TTATTTTCGAGAAGATGAAA+AGG + chr4_1:2850976-2850995 None:intergenic 25.0%
! TTTCATCTTCTCGAAAATAA+TGG - chr4_1:2850976-2850995 Msa0529360:intron 25.0%
!! AACAAGTATTGTAAGCAAAA+CGG + chr4_1:2851015-2851034 None:intergenic 25.0%
!!! TGATCAAGGTTAGTTTTAAA+CGG - chr4_1:2851318-2851337 Msa0529360:intron 25.0%
!!! CAATATTTATTTTGGAACTG+AGG + chr4_1:2851412-2851431 None:intergenic 25.0%
! AAGTTTCATATTAATCAGTG+TGG + chr4_1:2852017-2852036 None:intergenic 25.0%
!! TGAATATGAAAAGAAGTACA+AGG - chr4_1:2852126-2852145 Msa0529360:intron 25.0%
! ACTGATGATAGATTTCAAAA+CGG + chr4_1:2852161-2852180 None:intergenic 25.0%
!!! TTTTTTTGGAATTTACTCAC+CGG + chr4_1:2852217-2852236 None:intergenic 25.0%
! TTTGTATGCAATTTCCAATT+CGG + chr4_1:2852988-2853007 None:intergenic 25.0%
!!! GTTCTCTTTTATTTTTCTTC+TGG - chr4_1:2853330-2853349 Msa0529360:CDS 25.0%
! TTGATATATCTACACAGAAA+AGG - chr4_1:2853367-2853386 Msa0529360:CDS 25.0%
! TGATATATCTACACAGAAAA+GGG - chr4_1:2853368-2853387 Msa0529360:CDS 25.0%
!! TTGTTGCTTGAATAAGAAAA+AGG - chr4_1:2853409-2853428 Msa0529360:exon 25.0%
!!! TTTTGATTTTGCAGTTTGGT+TGG + chr4_1:2848858-2848877 None:intergenic 30.0%
TTCGGTTGAAAAAGCAAATT+CGG - chr4_1:2849226-2849245 Msa0529360:CDS 30.0%
! ATAATCCAAAGAATCCGTTT+TGG - chr4_1:2849315-2849334 Msa0529360:CDS 30.0%
! TTAAACCAAAACGGATTCTT+TGG + chr4_1:2849323-2849342 None:intergenic 30.0%
GACAAAAAAATTATCTGGGT+TGG - chr4_1:2849432-2849451 Msa0529360:CDS 30.0%
GACATGTATATATGTTGTGT+GGG + chr4_1:2849589-2849608 None:intergenic 30.0%
TGACATGTATATATGTTGTG+TGG + chr4_1:2849590-2849609 None:intergenic 30.0%
AAGAAGTAAACTTGATCAGA+CGG + chr4_1:2849812-2849831 None:intergenic 30.0%
!! ACTAGTTTCATTGTTTTGTC+TGG - chr4_1:2850106-2850125 Msa0529360:intron 30.0%
! TGGTGTCTGTGTTTTATATT+TGG - chr4_1:2850126-2850145 Msa0529360:intron 30.0%
! TTGCTCTTTTTAACACTCAA+TGG - chr4_1:2850333-2850352 Msa0529360:intron 30.0%
! AATATTGACCTTTTAAGCGA+TGG - chr4_1:2850398-2850417 Msa0529360:intron 30.0%
! ATCTTTGATTTATGGGAACT+TGG - chr4_1:2850472-2850491 Msa0529360:CDS 30.0%
! TCTTTGATTTATGGGAACTT+GGG - chr4_1:2850473-2850492 Msa0529360:CDS 30.0%
GTTAACAAGTCCAAAAGAAA+AGG + chr4_1:2850512-2850531 None:intergenic 30.0%
AATAACAACACTTCAGTCTA+TGG + chr4_1:2850534-2850553 None:intergenic 30.0%
! ATTTGAAGCAATTTCGTCAA+TGG - chr4_1:2850582-2850601 Msa0529360:intron 30.0%
! TTTGAAGCAATTTCGTCAAT+GGG - chr4_1:2850583-2850602 Msa0529360:intron 30.0%
TGATTAGGACATTATGACTT+TGG - chr4_1:2850738-2850757 Msa0529360:intron 30.0%
! CTTTGTTTCATGTAGTCTAT+TGG - chr4_1:2850767-2850786 Msa0529360:intron 30.0%
AAAAGGAGAAATACAAGAGT+TGG + chr4_1:2850959-2850978 None:intergenic 30.0%
GACAATCACATTTCTATTGA+CGG - chr4_1:2851146-2851165 Msa0529360:CDS 30.0%
!! AGTGTTGAAAAACGTTTTGA+GGG - chr4_1:2851194-2851213 Msa0529360:CDS 30.0%
! CATGTTATTTGGGTAAAGAA+TGG - chr4_1:2851227-2851246 Msa0529360:CDS 30.0%
AAACTAACCTTGATCAATGT+GGG + chr4_1:2851314-2851333 None:intergenic 30.0%
AAAACTAACCTTGATCAATG+TGG + chr4_1:2851315-2851334 None:intergenic 30.0%
GTATAATCACATCAACATGT+TGG + chr4_1:2851387-2851406 None:intergenic 30.0%
! CCAAAAAAAAGTGCAGTTTA+AGG + chr4_1:2851626-2851645 None:intergenic 30.0%
!!! CCTTAAACTGCACTTTTTTT+TGG - chr4_1:2851623-2851642 Msa0529360:intron 30.0%
TTTAATTAAGTGCAGTCTGT+TGG - chr4_1:2851777-2851796 Msa0529360:CDS 30.0%
! TTCACAACAACTATTGGTTA+TGG - chr4_1:2851828-2851847 Msa0529360:intron 30.0%
!!! AGAATTGCTTTTTTGTTTGC+AGG - chr4_1:2852041-2852060 Msa0529360:intron 30.0%
! CTTTTCATATTCAGCAAACT+TGG + chr4_1:2852119-2852138 None:intergenic 30.0%
! ATATGAAAAGAAGTACAAGG+AGG - chr4_1:2852129-2852148 Msa0529360:intron 30.0%
!!! GTTTTGAAATCTATCATCAG+TGG - chr4_1:2852160-2852179 Msa0529360:intron 30.0%
CATCAGATTCTTGATCAATT+TGG + chr4_1:2852280-2852299 None:intergenic 30.0%
! AGTCTGAAATCAAATTGGAA+CGG + chr4_1:2852325-2852344 None:intergenic 30.0%
! GTGTAAGTCTGAAATCAAAT+TGG + chr4_1:2852330-2852349 None:intergenic 30.0%
AGTCATGACATATATAACAC+CGG + chr4_1:2852670-2852689 None:intergenic 30.0%
! AGGCAATTTTTGTCTAGAAA+GGG + chr4_1:2852862-2852881 None:intergenic 30.0%
! TAGGCAATTTTTGTCTAGAA+AGG + chr4_1:2852863-2852882 None:intergenic 30.0%
TTCTATTGAAGGAGTTGAAA+AGG - chr4_1:2852896-2852915 Msa0529360:intron 30.0%
TCTATTGAAGGAGTTGAAAA+GGG - chr4_1:2852897-2852916 Msa0529360:intron 30.0%
!!! AAACCTGATGTCATTTTGAT+CGG - chr4_1:2852954-2852973 Msa0529360:CDS 30.0%
! AGTTGTTTCCTTTGTTTCTT+GGG - chr4_1:2853046-2853065 Msa0529360:CDS 30.0%
AAAAAGTTCCCAAGAAACAA+AGG + chr4_1:2853057-2853076 None:intergenic 30.0%
GGAACAATATACAAAGAGTT+TGG - chr4_1:2853233-2853252 Msa0529360:CDS 30.0%
!!! AGGGAGATTTGTTTTTGTTG+AGG + chr4_1:2848792-2848811 None:intergenic 35.0%
AAAGGAGAAAGAGAAAGTGA+AGG + chr4_1:2848895-2848914 None:intergenic 35.0%
TCGGTTGAAAAAGCAAATTC+GGG - chr4_1:2849227-2849246 Msa0529360:CDS 35.0%
GATACAAACTGACACAAACA+TGG + chr4_1:2849673-2849692 None:intergenic 35.0%
AAGCACTAATGACACAAACA+TGG + chr4_1:2849702-2849721 None:intergenic 35.0%
! TTGTGTCATTAGTGCTTCAT+AGG - chr4_1:2849705-2849724 Msa0529360:CDS 35.0%
TGTGATTTGATGTGACTGTT+TGG - chr4_1:2849729-2849748 Msa0529360:CDS 35.0%
GTGATTTGATGTGACTGTTT+GGG - chr4_1:2849730-2849749 Msa0529360:CDS 35.0%
TATGAATCGTCCAATCTTGA+CGG - chr4_1:2849861-2849880 Msa0529360:CDS 35.0%
ACTGACACATGTATTTGCAT+AGG - chr4_1:2850056-2850075 Msa0529360:intron 35.0%
TTTCTGTTGTTGTGGGTAAT+GGG - chr4_1:2850199-2850218 Msa0529360:CDS 35.0%
ACAGAACTCAAGAATATGCA+AGG + chr4_1:2850242-2850261 None:intergenic 35.0%
CAGGAGTTTCAAAATTCTCA+GGG + chr4_1:2850628-2850647 None:intergenic 35.0%
! ACAACAGGTTGGATACAATT+TGG - chr4_1:2850659-2850678 Msa0529360:intron 35.0%
TAGGACATTATGACTTTGGT+TGG - chr4_1:2850742-2850761 Msa0529360:intron 35.0%
! TCCTTTCTTGCAAATTTTCC+AGG - chr4_1:2850819-2850838 Msa0529360:intron 35.0%
ACCTGGAAAATTTGCAAGAA+AGG + chr4_1:2850823-2850842 None:intergenic 35.0%
ATGATCGATGATCTCATTGT+CGG + chr4_1:2850922-2850941 None:intergenic 35.0%
! AGGTATTGTATATTGGGTGA+TGG - chr4_1:2851041-2851060 Msa0529360:intron 35.0%
!!! GAGTGTTGAAAAACGTTTTG+AGG - chr4_1:2851193-2851212 Msa0529360:CDS 35.0%
!!! AAAAACGTTTTGAGGGACTT+GGG - chr4_1:2851201-2851220 Msa0529360:CDS 35.0%
GACGCACACATCATTAATTT+AGG + chr4_1:2851498-2851517 None:intergenic 35.0%
TCACTATATCCCACTATGTA+TGG - chr4_1:2851527-2851546 Msa0529360:intron 35.0%
ATTCACTTGCCATACATAGT+GGG + chr4_1:2851539-2851558 None:intergenic 35.0%
TATTCACTTGCCATACATAG+TGG + chr4_1:2851540-2851559 None:intergenic 35.0%
CTATGTATGGCAAGTGAATA+AGG - chr4_1:2851540-2851559 Msa0529360:intron 35.0%
!!! TGCACTTTTTTTTGGAACTG+AGG - chr4_1:2851631-2851650 Msa0529360:intron 35.0%
!!! GCACTTTTTTTTGGAACTGA+GGG - chr4_1:2851632-2851651 Msa0529360:intron 35.0%
!! TATTTAGCTTTCAGCTTCTC+AGG + chr4_1:2851714-2851733 None:intergenic 35.0%
CTGCACTTAATTAAACTGCT+AGG + chr4_1:2851772-2851791 None:intergenic 35.0%
CTGTAGGAGTTGGATTTATT+CGG + chr4_1:2851858-2851877 None:intergenic 35.0%
!! TCCATACTTTTTGACATCCT+CGG + chr4_1:2851964-2851983 None:intergenic 35.0%
!!! CTTTTTCAGCAAGGTCATAT+TGG + chr4_1:2852460-2852479 None:intergenic 35.0%
ATGACCTTGCTGAAAAAGTT+TGG - chr4_1:2852462-2852481 Msa0529360:intron 35.0%
!!! ATCACCAAACTTTTTCAGCA+AGG + chr4_1:2852469-2852488 None:intergenic 35.0%
!! AGATTTGGTGTTAGAGAACA+TGG - chr4_1:2852522-2852541 Msa0529360:intron 35.0%
ACAAAAAAGGTTGCACAGTA+TGG + chr4_1:2852597-2852616 None:intergenic 35.0%
GTAGTCGGTGAAAACAAAAA+AGG + chr4_1:2852610-2852629 None:intergenic 35.0%
! ATTTTTGTCTAGAAAGGGCA+AGG + chr4_1:2852857-2852876 None:intergenic 35.0%
AACTCCTTCAATAGAAGTTC+CGG + chr4_1:2852892-2852911 None:intergenic 35.0%
TTGGAAATTGCATACAAAGC+TGG - chr4_1:2852990-2853009 Msa0529360:CDS 35.0%
GGATCTAAGAAAAGAAGGAA+AGG - chr4_1:2853016-2853035 Msa0529360:CDS 35.0%
! GAGTTGTTTCCTTTGTTTCT+TGG - chr4_1:2853045-2853064 Msa0529360:CDS 35.0%
TGAACAATCACAAGCTTACA+AGG - chr4_1:2853079-2853098 Msa0529360:CDS 35.0%
GAGAAAATTGTTGGAAGCAA+AGG - chr4_1:2853167-2853186 Msa0529360:CDS 35.0%
TCTTTGTATATTGTTCCTGC+AGG + chr4_1:2853230-2853249 None:intergenic 35.0%
!!! AGTTTGGTTGGTTTTGTAGG+GGG + chr4_1:2848846-2848865 None:intergenic 40.0%
!!! CAGTTTGGTTGGTTTTGTAG+GGG + chr4_1:2848847-2848866 None:intergenic 40.0%
!!! GCAGTTTGGTTGGTTTTGTA+GGG + chr4_1:2848848-2848867 None:intergenic 40.0%
!!! TGCAGTTTGGTTGGTTTTGT+AGG + chr4_1:2848849-2848868 None:intergenic 40.0%
CGATCACGGTTAAACCAAAA+CGG + chr4_1:2849332-2849351 None:intergenic 40.0%
!!! CGTTTTGGTTTAACCGTGAT+CGG - chr4_1:2849330-2849349 Msa0529360:CDS 40.0%
CAGACAAAACAAACCGATCA+CGG + chr4_1:2849346-2849365 None:intergenic 40.0%
!!! TTTGTTTTGTCTGCTGGTCA+TGG - chr4_1:2849353-2849372 Msa0529360:CDS 40.0%
TATGCTTTGCTTCATCTTGC+TGG - chr4_1:2849389-2849408 Msa0529360:CDS 40.0%
! TGATGTGACTGTTTGGGTTT+AGG - chr4_1:2849736-2849755 Msa0529360:CDS 40.0%
! ACTGTTTGGGTTTAGGAGAT+TGG - chr4_1:2849743-2849762 Msa0529360:CDS 40.0%
TGTCAAAGTGATCAGGCATT+TGG - chr4_1:2849775-2849794 Msa0529360:CDS 40.0%
GTCAAAGTGATCAGGCATTT+GGG - chr4_1:2849776-2849795 Msa0529360:CDS 40.0%
ATGGCTACTAATGTCACGAA+AGG - chr4_1:2849885-2849904 Msa0529360:CDS 40.0%
!! AAAAGGTGTCTATGTCGTCT+TGG + chr4_1:2850027-2850046 None:intergenic 40.0%
GTTTCTGTTGTTGTGGGTAA+TGG - chr4_1:2850198-2850217 Msa0529360:CDS 40.0%
! ACCTTTTAAGCGATGGTTAG+CGG - chr4_1:2850405-2850424 Msa0529360:CDS 40.0%
CCAGGAGTTTCAAAATTCTC+AGG + chr4_1:2850629-2850648 None:intergenic 40.0%
!!! CCTGAGAATTTTGAAACTCC+TGG - chr4_1:2850626-2850645 Msa0529360:intron 40.0%
GAATTGAAGTCACAACAGGT+TGG - chr4_1:2850648-2850667 Msa0529360:intron 40.0%
!! ATTGTCGGGCTTGTTAAATC+TGG + chr4_1:2850907-2850926 None:intergenic 40.0%
TGATCGATGATCTCATTGTC+GGG + chr4_1:2850921-2850940 None:intergenic 40.0%
AGCAAAACGGAAGACAACTA+AGG + chr4_1:2851002-2851021 None:intergenic 40.0%
! ATTGGGTGATGGTTGTCAAA+TGG - chr4_1:2851052-2851071 Msa0529360:CDS 40.0%
!!! GAAAAACGTTTTGAGGGACT+TGG - chr4_1:2851200-2851219 Msa0529360:CDS 40.0%
! ACTTGGGTGGCATGTTATTT+GGG - chr4_1:2851217-2851236 Msa0529360:CDS 40.0%
TGGGTAAAGAATGGAAACAC+TGG - chr4_1:2851236-2851255 Msa0529360:CDS 40.0%
TGAAATTCGTGCTGCCATTA+AGG - chr4_1:2851265-2851284 Msa0529360:CDS 40.0%
! GACAGCTTTTGCTTCCTTAA+TGG + chr4_1:2851282-2851301 None:intergenic 40.0%
AGTTGTTGTGAACTGCGAAA+TGG + chr4_1:2851820-2851839 None:intergenic 40.0%
TCGCAGTTCACAACAACTAT+TGG - chr4_1:2851822-2851841 Msa0529360:intron 40.0%
TCTTGTGGCATCAACTTCTT+TGG + chr4_1:2851904-2851923 None:intergenic 40.0%
GATGCCACAAGAAACAATCT+TGG - chr4_1:2851912-2851931 Msa0529360:intron 40.0%
! CCATCCAAGATTGTTTCTTG+TGG + chr4_1:2851919-2851938 None:intergenic 40.0%
CCACAAGAAACAATCTTGGA+TGG - chr4_1:2851916-2851935 Msa0529360:intron 40.0%
!! CCATACTTTTTGACATCCTC+GGG + chr4_1:2851963-2851982 None:intergenic 40.0%
!!! GCTTTTTTGTTTGCAGGCAT+TGG - chr4_1:2852047-2852066 Msa0529360:intron 40.0%
! CATTAAGGTTTTGCTGCGAT+AGG + chr4_1:2852383-2852402 None:intergenic 40.0%
! TGGTGTTAGAGAACATGGAA+TGG - chr4_1:2852527-2852546 Msa0529360:intron 40.0%
GGTGTTAGAGAACATGGAAT+GGG - chr4_1:2852528-2852547 Msa0529360:intron 40.0%
CACAGTATGGAATAAGTCCA+CGG + chr4_1:2852584-2852603 None:intergenic 40.0%
!! GACATATATAACACCGGCTT+CGG + chr4_1:2852664-2852683 None:intergenic 40.0%
GTCATGACTCACGATTCAAT+AGG - chr4_1:2852681-2852700 Msa0529360:intron 40.0%
ACTCACGATTCAATAGGACT+TGG - chr4_1:2852687-2852706 Msa0529360:intron 40.0%
TCAAGATATTTGGCATTGCC+CGG + chr4_1:2852758-2852777 None:intergenic 40.0%
CAAAAATTGCCTAACCTTGC+CGG - chr4_1:2852870-2852889 Msa0529360:intron 40.0%
ATTGAAGGAGTTGAAAAGGG+TGG - chr4_1:2852900-2852919 Msa0529360:intron 40.0%
GTTCCGATCAAAATGACATC+AGG + chr4_1:2852960-2852979 None:intergenic 40.0%
!!! GATGTCATTTTGATCGGAAC+CGG - chr4_1:2852960-2852979 Msa0529360:CDS 40.0%
TGCAATTTCCAATTCGGAAC+CGG + chr4_1:2852982-2853001 None:intergenic 40.0%
AATTGCATACAAAGCTGGTG+AGG - chr4_1:2852995-2853014 Msa0529360:CDS 40.0%
GGTGAGGATCTAAGAAAAGA+AGG - chr4_1:2853011-2853030 Msa0529360:CDS 40.0%
TTTGGGTGGGAGAAAATTGT+TGG - chr4_1:2853158-2853177 Msa0529360:CDS 40.0%
GGAAGCAAAGGAAAAGCAAT+CGG - chr4_1:2853179-2853198 Msa0529360:CDS 40.0%
TACACTGAACCAGTCCTCTT+TGG - chr4_1:2848759-2848778 Msa0529360:three_prime_UTR 45.0%
ACACTGAACCAGTCCTCTTT+GGG - chr4_1:2848760-2848779 Msa0529360:three_prime_UTR 45.0%
!!! TTTGGTTGGTTTTGTAGGGG+GGG + chr4_1:2848844-2848863 None:intergenic 45.0%
!!! GTTTGGTTGGTTTTGTAGGG+GGG + chr4_1:2848845-2848864 None:intergenic 45.0%
AAAGCAAATTCGGGTCATCC+TGG - chr4_1:2849236-2849255 Msa0529360:CDS 45.0%
GGTCATCCTGGTTTACCTAT+GGG - chr4_1:2849248-2849267 Msa0529360:CDS 45.0%
TCGTAAAGCACATGACCCAT+TGG + chr4_1:2849281-2849300 None:intergenic 45.0%
!!! GATCGGTTTGTTTTGTCTGC+TGG - chr4_1:2849347-2849366 Msa0529360:CDS 45.0%
TGCTGGATATGACAGTGTTC+AGG - chr4_1:2849406-2849425 Msa0529360:CDS 45.0%
TCTCCACTGTCAAAGTGATC+AGG - chr4_1:2849768-2849787 Msa0529360:CDS 45.0%
ATGCCTGATCACTTTGACAG+TGG + chr4_1:2849774-2849793 None:intergenic 45.0%
! TGATCAGGCATTTGGGACAT+TGG - chr4_1:2849783-2849802 Msa0529360:CDS 45.0%
ATCGTCCAATCTTGACGGAA+TGG - chr4_1:2849866-2849885 Msa0529360:CDS 45.0%
AGTAGCCATTCCGTCAAGAT+TGG + chr4_1:2849874-2849893 None:intergenic 45.0%
ACTACCAGAACCCAAAGATC+AGG + chr4_1:2849933-2849952 None:intergenic 45.0%
! TGATCTTTGGGTTCTGGTAG+TGG - chr4_1:2849932-2849951 Msa0529360:CDS 45.0%
! GATCTTTGGGTTCTGGTAGT+GGG - chr4_1:2849933-2849952 Msa0529360:CDS 45.0%
GTGTCGGGTATGACACATAT+TGG - chr4_1:2849998-2850017 Msa0529360:CDS 45.0%
! GTGTCAGTGTCGAACACAAA+AGG + chr4_1:2850044-2850063 None:intergenic 45.0%
! CCTTTTAAGCGATGGTTAGC+GGG - chr4_1:2850406-2850425 Msa0529360:CDS 45.0%
! AAAATTCTCAGGGTGTCCAG+GGG + chr4_1:2850618-2850637 None:intergenic 45.0%
! CAAAATTCTCAGGGTGTCCA+GGG + chr4_1:2850619-2850638 None:intergenic 45.0%
! TCAAAATTCTCAGGGTGTCC+AGG + chr4_1:2850620-2850639 None:intergenic 45.0%
CCTGTTGTGACTTCAATTCC+AGG + chr4_1:2850647-2850666 None:intergenic 45.0%
CCTGGAATTGAAGTCACAAC+AGG - chr4_1:2850644-2850663 Msa0529360:intron 45.0%
! GCAAATTTTCCAGGTCCTCT+TGG - chr4_1:2850828-2850847 Msa0529360:intron 45.0%
AAGGGCTAAACCAACAGCAT+TGG + chr4_1:2850865-2850884 None:intergenic 45.0%
! GGTGATGGTTGTCAAATGGA+GGG - chr4_1:2851056-2851075 Msa0529360:CDS 45.0%
! AATGAAGCTTGCTCACTTGC+AGG - chr4_1:2851086-2851105 Msa0529360:CDS 45.0%
ACTCTCAGTGAACGCGATTT+CGG + chr4_1:2851177-2851196 None:intergenic 45.0%
GACTTGGGTGGCATGTTATT+TGG - chr4_1:2851216-2851235 Msa0529360:CDS 45.0%
AGACAGACCCACATTGATCA+AGG - chr4_1:2851304-2851323 Msa0529360:CDS 45.0%
CCCGAGGATGTCAAAAAGTA+TGG - chr4_1:2851960-2851979 Msa0529360:intron 45.0%
! GTTTTGCTGCGATAGGTTTC+GGG + chr4_1:2852376-2852395 None:intergenic 45.0%
! GGTTTTGCTGCGATAGGTTT+CGG + chr4_1:2852377-2852396 None:intergenic 45.0%
!! GAACATTCGCAAGGGCATTA+AGG + chr4_1:2852398-2852417 None:intergenic 45.0%
AATGTTCTTCCCGGTCTGAT+TGG - chr4_1:2852411-2852430 Msa0529360:intron 45.0%
AATCTAACGTTACGCTCTGC+TGG + chr4_1:2852507-2852526 None:intergenic 45.0%
GCAGAGCGTAACGTTAGATT+TGG - chr4_1:2852507-2852526 Msa0529360:intron 45.0%
!! TATAACACCGGCTTCGGATA+GGG + chr4_1:2852658-2852677 None:intergenic 45.0%
!! ATATAACACCGGCTTCGGAT+AGG + chr4_1:2852659-2852678 None:intergenic 45.0%
CGATTCAATAGGACTTGGAG+AGG - chr4_1:2852692-2852711 Msa0529360:intron 45.0%
TCAATAGGACTTGGAGAGGA+TGG - chr4_1:2852696-2852715 Msa0529360:intron 45.0%
! GGACGGAGCATCAAGATATT+TGG + chr4_1:2852768-2852787 None:intergenic 45.0%
! AGCTGTTTCGTTACCATCAG+CGG + chr4_1:2852790-2852809 None:intergenic 45.0%
! CTGATGGTAACGAAACAGCT+GGG - chr4_1:2852790-2852809 Msa0529360:intron 45.0%
! TGATGGTAACGAAACAGCTG+GGG - chr4_1:2852791-2852810 Msa0529360:intron 45.0%
ACAAAGTTGCGGTGCTTAAC+AGG - chr4_1:2852817-2852836 Msa0529360:intron 45.0%
CTAGAAAGGGCAAGGATAGA+GGG + chr4_1:2852849-2852868 None:intergenic 45.0%
TCTAGAAAGGGCAAGGATAG+AGG + chr4_1:2852850-2852869 None:intergenic 45.0%
ATAGAAGTTCCGGCAAGGTT+AGG + chr4_1:2852882-2852901 None:intergenic 45.0%
CTTCAATAGAAGTTCCGGCA+AGG + chr4_1:2852887-2852906 None:intergenic 45.0%
CTTGCCGGAACTTCTATTGA+AGG - chr4_1:2852885-2852904 Msa0529360:intron 45.0%
ATCGTCTCTGACAACTCAAC+AGG - chr4_1:2852927-2852946 Msa0529360:intron 45.0%
TGTTCTCCCTACTGCTGTTA+CGG - chr4_1:2853106-2853125 Msa0529360:CDS 45.0%
ATTGAGGCCGGATCAACATT+TGG - chr4_1:2853140-2853159 Msa0529360:CDS 45.0%
TTGAGGCCGGATCAACATTT+GGG - chr4_1:2853141-2853160 Msa0529360:CDS 45.0%
!!! GCAATCGGCATTGATCGTTT+TGG - chr4_1:2853194-2853213 Msa0529360:CDS 45.0%
!!! TATTAAAAAAGATTTTTTTT+TGG + chr4_1:2852231-2852250 None:intergenic 5.0%
AGGGAGAGAGAGAGAGAGAA+GGG + chr4_1:2848811-2848830 None:intergenic 50.0%
!! ATTGGGGTTGGTGAGAGAGA+GGG + chr4_1:2848985-2849004 None:intergenic 50.0%
ATGTGAGGCGCGTAAGATTG+GGG + chr4_1:2849001-2849020 None:intergenic 50.0%
GATGTGAGGCGCGTAAGATT+GGG + chr4_1:2849002-2849021 None:intergenic 50.0%
GATGAGTCTGTGGTGGTTGA+CGG + chr4_1:2849161-2849180 None:intergenic 50.0%
AACGAGAGATGAGTCTGTGG+TGG + chr4_1:2849168-2849187 None:intergenic 50.0%
CTCAACGAGAGATGAGTCTG+TGG + chr4_1:2849171-2849190 None:intergenic 50.0%
TTTCAACCGAATCAACCGCG+AGG + chr4_1:2849217-2849236 None:intergenic 50.0%
GGGTCATCCTGGTTTACCTA+TGG - chr4_1:2849247-2849266 Msa0529360:CDS 50.0%
GCACAACCCATAGGTAAACC+AGG + chr4_1:2849257-2849276 None:intergenic 50.0%
! ACCTATGGGTTGTGCTCCAA+TGG - chr4_1:2849262-2849281 Msa0529360:CDS 50.0%
! CCTATGGGTTGTGCTCCAAT+GGG - chr4_1:2849263-2849282 Msa0529360:CDS 50.0%
GGGTCATGTGCTTTACGATG+AGG - chr4_1:2849283-2849302 Msa0529360:CDS 50.0%
ACGAAAGGAAGTCTGACTGC+CGG - chr4_1:2849900-2849919 Msa0529360:CDS 50.0%
ACCAGAACCCAAAGATCAGG+TGG + chr4_1:2849930-2849949 None:intergenic 50.0%
CCCGCTAACCATCGCTTAAA+AGG + chr4_1:2850409-2850428 None:intergenic 50.0%
! TTTTCCAGGTCCTCTTGGTC+AGG - chr4_1:2850833-2850852 Msa0529360:intron 50.0%
TTTCCAGGTCCTCTTGGTCA+GGG - chr4_1:2850834-2850853 Msa0529360:intron 50.0%
TTGGCAATTCCCTGACCAAG+AGG + chr4_1:2850846-2850865 None:intergenic 50.0%
CAGGGAATTGCCAATGCTGT+TGG - chr4_1:2850852-2850871 Msa0529360:intron 50.0%
AGCTAAGTGCTTCTCGGCAA+GGG + chr4_1:2850883-2850902 None:intergenic 50.0%
TCTGGCAGCTAAGTGCTTCT+CGG + chr4_1:2850889-2850908 None:intergenic 50.0%
! GGGTGATGGTTGTCAAATGG+AGG - chr4_1:2851055-2851074 Msa0529360:CDS 50.0%
TTGCTCACTTGCAGGACACT+GGG - chr4_1:2851094-2851113 Msa0529360:CDS 50.0%
!!! AACGTTTTGAGGGACTTGGG+TGG - chr4_1:2851204-2851223 Msa0529360:CDS 50.0%
TCCAACTCCTACAGTGTGCA+TGG - chr4_1:2851864-2851883 Msa0529360:intron 50.0%
TCCATGCACACTGTAGGAGT+TGG + chr4_1:2851868-2851887 None:intergenic 50.0%
TGCACTTCCATGCACACTGT+AGG + chr4_1:2851874-2851893 None:intergenic 50.0%
! AGTGTGCATGGAAGTGCACT+TGG - chr4_1:2851876-2851895 Msa0529360:intron 50.0%
ATTCAAGAGCAGCACCCTCA+CGG + chr4_1:2852084-2852103 None:intergenic 50.0%
! GTGCTGCTCTTGAATCTGAG+TGG - chr4_1:2852089-2852108 Msa0529360:intron 50.0%
ATCAGTGGCGATTTACCTGC+TGG - chr4_1:2852175-2852194 Msa0529360:intron 50.0%
! TGGCGATTTACCTGCTGGTT+GGG - chr4_1:2852180-2852199 Msa0529360:intron 50.0%
!! TGGTTGGGAGAAAGCACTTC+CGG - chr4_1:2852195-2852214 Msa0529360:intron 50.0%
!! CGATAGGTTTCGGGTTGCAT+CGG + chr4_1:2852367-2852386 None:intergenic 50.0%
ACCGGGAAGAACATTCGCAA+GGG + chr4_1:2852406-2852425 None:intergenic 50.0%
GCTCTGCTGGAGAATCACTT+TGG + chr4_1:2852494-2852513 None:intergenic 50.0%
GGAATGGGAGCAATCAGCAA+TGG - chr4_1:2852543-2852562 Msa0529360:intron 50.0%
!! GTTTTCACCGACTACATGCG+TGG - chr4_1:2852615-2852634 Msa0529360:intron 50.0%
AATGGCACCACGCATGTAGT+CGG + chr4_1:2852625-2852644 None:intergenic 50.0%
!! ACTACATGCGTGGTGCCATT+AGG - chr4_1:2852625-2852644 Msa0529360:intron 50.0%
AAGCTTGCCAGGTGCTCTAT+AGG + chr4_1:2852735-2852754 None:intergenic 50.0%
TTTCGTTACCATCAGCGGGA+CGG + chr4_1:2852785-2852804 None:intergenic 50.0%
! GCTGTTTCGTTACCATCAGC+GGG + chr4_1:2852789-2852808 None:intergenic 50.0%
! GCTGATGGTAACGAAACAGC+TGG - chr4_1:2852789-2852808 Msa0529360:intron 50.0%
AGCTGGGGCATACAAAGTTG+CGG - chr4_1:2852806-2852825 Msa0529360:intron 50.0%
! TACGGCTAGGGTTAGCATTG+AGG - chr4_1:2853124-2853143 Msa0529360:CDS 50.0%
CTCCCACCCAAATGTTGATC+CGG + chr4_1:2853150-2853169 None:intergenic 50.0%
GTTGAGGTTGTCGCCCAAAG+AGG + chr4_1:2848776-2848795 None:intergenic 55.0%
GAGGGAGAGAGAGAGAGAGA+AGG + chr4_1:2848812-2848831 None:intergenic 55.0%
!!! GTTGGTTTTGTAGGGGGGGA+GGG + chr4_1:2848840-2848859 None:intergenic 55.0%
! GTTGGTGAGAGAGAGGGAAG+TGG + chr4_1:2848979-2848998 None:intergenic 55.0%
!! GATTGGGGTTGGTGAGAGAG+AGG + chr4_1:2848986-2849005 None:intergenic 55.0%
GGATGTGAGGCGCGTAAGAT+TGG + chr4_1:2849003-2849022 None:intergenic 55.0%
! TGGTGGATGGGAGAGAAGAG+AGG + chr4_1:2849043-2849062 None:intergenic 55.0%
!! GGTTGAGGGTGATGGTGGAT+GGG + chr4_1:2849055-2849074 None:intergenic 55.0%
GATTGAGAGAGGTGGGTGGT+GGG + chr4_1:2849089-2849108 None:intergenic 55.0%
! GTGGTGGGATTGAGAGAGGT+GGG + chr4_1:2849096-2849115 None:intergenic 55.0%
AGAGACGGATGCATGGATGG+CGG + chr4_1:2849132-2849151 None:intergenic 55.0%
TGCAGAGACGGATGCATGGA+TGG + chr4_1:2849135-2849154 None:intergenic 55.0%
CAACACGATCCGTTTCCTCG+CGG - chr4_1:2849199-2849218 Msa0529360:CDS 55.0%
CCGAATCAACCGCGAGGAAA+CGG + chr4_1:2849211-2849230 None:intergenic 55.0%
CCGTTTCCTCGCGGTTGATT+CGG - chr4_1:2849208-2849227 Msa0529360:CDS 55.0%
CCCATTGGAGCACAACCCAT+AGG + chr4_1:2849266-2849285 None:intergenic 55.0%
CGAAAGGAAGTCTGACTGCC+GGG - chr4_1:2849901-2849920 Msa0529360:CDS 55.0%
CCAAAGATCAGGTGGCTTCC+CGG + chr4_1:2849922-2849941 None:intergenic 55.0%
CGGGAAGCCACCTGATCTTT+GGG - chr4_1:2849920-2849939 Msa0529360:CDS 55.0%
! GCCACCTGATCTTTGGGTTC+TGG - chr4_1:2849926-2849945 Msa0529360:CDS 55.0%
ATTCCCTGACCAAGAGGACC+TGG + chr4_1:2850840-2850859 None:intergenic 55.0%
CAGCTAAGTGCTTCTCGGCA+AGG + chr4_1:2850884-2850903 None:intergenic 55.0%
CTTGCTCACTTGCAGGACAC+TGG - chr4_1:2851093-2851112 Msa0529360:CDS 55.0%
TGCTCACTTGCAGGACACTG+GGG - chr4_1:2851095-2851114 Msa0529360:CDS 55.0%
TTGCAGGACACTGGGGACTA+GGG - chr4_1:2851102-2851121 Msa0529360:CDS 55.0%
GGCACGTGGAAAGGCTCATA+TGG + chr4_1:2851942-2851961 None:intergenic 55.0%
! TTTTGACATCCTCGGGCACG+TGG + chr4_1:2851956-2851975 None:intergenic 55.0%
GTGGCGATTTACCTGCTGGT+TGG - chr4_1:2852179-2852198 Msa0529360:intron 55.0%
AGTGCTTTCTCCCAACCAGC+AGG + chr4_1:2852193-2852212 None:intergenic 55.0%
GCCCTTGCGAATGTTCTTCC+CGG - chr4_1:2852402-2852421 Msa0529360:intron 55.0%
GACCGGGAAGAACATTCGCA+AGG + chr4_1:2852407-2852426 None:intergenic 55.0%
GTTCTTCCCGGTCTGATTGG+CGG - chr4_1:2852414-2852433 Msa0529360:intron 55.0%
GGATAGGGCGGAAAGCCTAA+TGG + chr4_1:2852643-2852662 None:intergenic 55.0%
! TGCTCTATAGGCTGGTGGGT+TGG + chr4_1:2852723-2852742 None:intergenic 55.0%
CAGGTGCTCTATAGGCTGGT+GGG + chr4_1:2852727-2852746 None:intergenic 55.0%
TTGCCAGGTGCTCTATAGGC+TGG + chr4_1:2852731-2852750 None:intergenic 55.0%
! TAGAGCACCTGGCAAGCTTC+CGG - chr4_1:2852736-2852755 Msa0529360:intron 55.0%
! GATCGGAACCGGTTCCGAAT+TGG - chr4_1:2852971-2852990 Msa0529360:CDS 55.0%
TCCCTACTGCTGTTACGGCT+AGG - chr4_1:2853111-2853130 Msa0529360:CDS 55.0%
CCCTAGCCGTAACAGCAGTA+GGG + chr4_1:2853115-2853134 None:intergenic 55.0%
CCCTACTGCTGTTACGGCTA+GGG - chr4_1:2853112-2853131 Msa0529360:CDS 55.0%
ACCCTAGCCGTAACAGCAGT+AGG + chr4_1:2853116-2853135 None:intergenic 55.0%
! GCTAGGGTTAGCATTGAGGC+CGG - chr4_1:2853128-2853147 Msa0529360:CDS 55.0%
AGGCCGGATCAACATTTGGG+TGG - chr4_1:2853144-2853163 Msa0529360:CDS 55.0%
GGCCGGATCAACATTTGGGT+GGG - chr4_1:2853145-2853164 Msa0529360:CDS 55.0%
! TTTGGAGCTAGTGCTCCTGC+AGG - chr4_1:2853212-2853231 Msa0529360:CDS 55.0%
GGTTGTCGCCCAAAGAGGAC+TGG + chr4_1:2848771-2848790 None:intergenic 60.0%
!!! GGTTGGTTTTGTAGGGGGGG+AGG + chr4_1:2848841-2848860 None:intergenic 60.0%
GAGGCGCGTAAGATTGGGGT+TGG + chr4_1:2848997-2849016 None:intergenic 60.0%
! TGGTGGATGGGGAGGATGTG+AGG + chr4_1:2849016-2849035 None:intergenic 60.0%
!! AAGAGAGGCGCGTGGTGGAT+GGG + chr4_1:2849028-2849047 None:intergenic 60.0%
!! CGGTTGAGGGTGATGGTGGA+TGG + chr4_1:2849056-2849075 None:intergenic 60.0%
! TGTGCGGTTGAGGGTGATGG+TGG + chr4_1:2849060-2849079 None:intergenic 60.0%
TGGTGTGCGGTTGAGGGTGA+TGG + chr4_1:2849063-2849082 None:intergenic 60.0%
!! GGGAGTTGGTGTGCGGTTGA+GGG + chr4_1:2849069-2849088 None:intergenic 60.0%
!! TGGGAGTTGGTGTGCGGTTG+AGG + chr4_1:2849070-2849089 None:intergenic 60.0%
GGATTGAGAGAGGTGGGTGG+TGG + chr4_1:2849090-2849109 None:intergenic 60.0%
GTGGGATTGAGAGAGGTGGG+TGG + chr4_1:2849093-2849112 None:intergenic 60.0%
!! GGTGGTGGGATTGAGAGAGG+TGG + chr4_1:2849097-2849116 None:intergenic 60.0%
!! GGTGGTGGTGGGATTGAGAG+AGG + chr4_1:2849100-2849119 None:intergenic 60.0%
GAGTCTGTGGTGGTTGACGG+CGG + chr4_1:2849158-2849177 None:intergenic 60.0%
CCGGGAAGCCACCTGATCTT+TGG - chr4_1:2849919-2849938 Msa0529360:CDS 60.0%
CAATGGGAGAGCAGAACCCC+TGG - chr4_1:2850599-2850618 Msa0529360:intron 60.0%
CTTGCAGGACACTGGGGACT+AGG - chr4_1:2851101-2851120 Msa0529360:CDS 60.0%
ACATCCTCGGGCACGTGGAA+AGG + chr4_1:2851951-2851970 None:intergenic 60.0%
TTGGAGTCGCCACATCCGTG+AGG - chr4_1:2852066-2852085 Msa0529360:intron 60.0%
TGGAGTCGCCACATCCGTGA+GGG - chr4_1:2852067-2852086 Msa0529360:intron 60.0%
! GTTGCATCGGCAGGGATCTC+TGG + chr4_1:2852354-2852373 None:intergenic 60.0%
!! GGTTTCGGGTTGCATCGGCA+GGG + chr4_1:2852362-2852381 None:intergenic 60.0%
!! AGGTTTCGGGTTGCATCGGC+AGG + chr4_1:2852363-2852382 None:intergenic 60.0%
TGCACTGCCGCCAATCAGAC+CGG + chr4_1:2852424-2852443 None:intergenic 60.0%
CTTTCCGCCCTATCCGAAGC+CGG - chr4_1:2852648-2852667 Msa0529360:intron 60.0%
!! AACACCGGCTTCGGATAGGG+CGG + chr4_1:2852655-2852674 None:intergenic 60.0%
CCAGGTGCTCTATAGGCTGG+TGG + chr4_1:2852728-2852747 None:intergenic 60.0%
! CCACCAGCCTATAGAGCACC+TGG - chr4_1:2852725-2852744 Msa0529360:intron 60.0%
! AGAGCACCTGGCAAGCTTCC+GGG - chr4_1:2852737-2852756 Msa0529360:intron 60.0%
TTGATGCTCCGTCCCGCTGA+TGG - chr4_1:2852774-2852793 Msa0529360:intron 60.0%
TAGGGGGGGAGGGAGAGAGA+GGG + chr4_1:2848830-2848849 None:intergenic 65.0%
!! AGAGAGGCGCGTGGTGGATG+GGG + chr4_1:2849027-2849046 None:intergenic 65.0%
! GAAGAGAGGCGCGTGGTGGA+TGG + chr4_1:2849029-2849048 None:intergenic 65.0%
! GAGAGAAGAGAGGCGCGTGG+TGG + chr4_1:2849033-2849052 None:intergenic 65.0%
! TGGGAGAGAAGAGAGGCGCG+TGG + chr4_1:2849036-2849055 None:intergenic 65.0%
!! GGGTGGTGGGAGTTGGTGTG+CGG + chr4_1:2849076-2849095 None:intergenic 65.0%
!! GAGAGGTGGGTGGTGGGAGT+TGG + chr4_1:2849083-2849102 None:intergenic 65.0%
! GGTGTGGCGAAGGTGGTGGT+GGG + chr4_1:2849111-2849130 None:intergenic 65.0%
! CATGGATGGCGGTGTGGCGA+AGG + chr4_1:2849121-2849140 None:intergenic 65.0%
! CGGATGCATGGATGGCGGTG+TGG + chr4_1:2849127-2849146 None:intergenic 65.0%
GCGGTGCAGAGACGGATGCA+TGG + chr4_1:2849139-2849158 None:intergenic 65.0%
GGTTGACGGCGGTGCAGAGA+CGG + chr4_1:2849147-2849166 None:intergenic 65.0%
TGAGCCTTTCCACGTGCCCG+AGG - chr4_1:2851944-2851963 Msa0529360:intron 65.0%
GAGCAGCACCCTCACGGATG+TGG + chr4_1:2852078-2852097 None:intergenic 65.0%
GCACTGCCGCCAATCAGACC+GGG + chr4_1:2852423-2852442 None:intergenic 65.0%
GGCATCGCTCTTCACAGCCG+TGG - chr4_1:2852564-2852583 Msa0529360:intron 65.0%
GCATTGCCCGGAAGCTTGCC+AGG + chr4_1:2852746-2852765 None:intergenic 65.0%
GTAGGGGGGGAGGGAGAGAG+AGG + chr4_1:2848831-2848850 None:intergenic 70.0%
! CGGTGTGGCGAAGGTGGTGG+TGG + chr4_1:2849112-2849131 None:intergenic 70.0%
TGGCGGTGTGGCGAAGGTGG+TGG + chr4_1:2849115-2849134 None:intergenic 70.0%
! GGATGGCGGTGTGGCGAAGG+TGG + chr4_1:2849118-2849137 None:intergenic 70.0%
!! GAGGCGCGTGGTGGATGGGG+AGG + chr4_1:2849024-2849043 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 2848758 2853619 2848758 ID=Msa0529360;Name=Msa0529360
chr4_1 mRNA 2848758 2853619 2848758 ID=Msa0529360-mRNA-1;Parent=Msa0529360;Name=Msa0529360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=185|1|1|1|0.85|0.75|8|318|735
chr4_1 exon 2848758 2850035 2848758 ID=Msa0529360-mRNA-1:exon:804;Parent=Msa0529360-mRNA-1
chr4_1 exon 2850161 2850314 2850161 ID=Msa0529360-mRNA-1:exon:803;Parent=Msa0529360-mRNA-1
chr4_1 exon 2850401 2850549 2850401 ID=Msa0529360-mRNA-1:exon:802;Parent=Msa0529360-mRNA-1
chr4_1 exon 2851052 2851334 2851052 ID=Msa0529360-mRNA-1:exon:801;Parent=Msa0529360-mRNA-1
chr4_1 exon 2851431 2851536 2851431 ID=Msa0529360-mRNA-1:exon:800;Parent=Msa0529360-mRNA-1
chr4_1 exon 2851712 2851802 2851712 ID=Msa0529360-mRNA-1:exon:799;Parent=Msa0529360-mRNA-1
chr4_1 exon 2852950 2853532 2852950 ID=Msa0529360-mRNA-1:exon:798;Parent=Msa0529360-mRNA-1
chr4_1 exon 2853553 2853619 2853553 ID=Msa0529360-mRNA-1:exon:797;Parent=Msa0529360-mRNA-1
chr4_1 five_prime_UTR 2853553 2853619 2853553 ID=Msa0529360-mRNA-1:five_prime_utr;Parent=Msa0529360-mRNA-1
chr4_1 five_prime_UTR 2853415 2853532 2853415 ID=Msa0529360-mRNA-1:five_prime_utr;Parent=Msa0529360-mRNA-1
chr4_1 CDS 2852950 2853414 2852950 ID=Msa0529360-mRNA-1:cds;Parent=Msa0529360-mRNA-1
chr4_1 CDS 2851712 2851802 2851712 ID=Msa0529360-mRNA-1:cds;Parent=Msa0529360-mRNA-1
chr4_1 CDS 2851431 2851536 2851431 ID=Msa0529360-mRNA-1:cds;Parent=Msa0529360-mRNA-1
chr4_1 CDS 2851052 2851334 2851052 ID=Msa0529360-mRNA-1:cds;Parent=Msa0529360-mRNA-1
chr4_1 CDS 2850401 2850549 2850401 ID=Msa0529360-mRNA-1:cds;Parent=Msa0529360-mRNA-1
chr4_1 CDS 2850161 2850314 2850161 ID=Msa0529360-mRNA-1:cds;Parent=Msa0529360-mRNA-1
chr4_1 CDS 2849076 2850035 2849076 ID=Msa0529360-mRNA-1:cds;Parent=Msa0529360-mRNA-1
chr4_1 three_prime_UTR 2848758 2849075 2848758 ID=Msa0529360-mRNA-1:three_prime_utr;Parent=Msa0529360-mRNA-1
Gene Sequence

>Msa0529360

ATGTCTTCAACTTCCACTTCCCTCTCTCTCACCAACCCCAATCTTACGCGCCTCACATCCTCCCCATCCACCACGCGCCTCTCTTCTCTCCCATCCACCATCACCCTCAACCGCACACCAACTCCCACCACCCACCTCTCTCAATCCCACCACCACCTTCGCCACACCGCCATCCATGCATCCGTCTCTGCACCGCCGTCAACCACCACAGACTCATCTCTCGTTGAGAAATCAGTCAACACGATCCGTTTCCTCGCGGTTGATTCGGTTGAAAAAGCAAATTCGGGTCATCCTGGTTTACCTATGGGTTGTGCTCCAATGGGTCATGTGCTTTACGATGAGGTTATGAGATATAATCCAAAGAATCCGTTTTGGTTTAACCGTGATCGGTTTGTTTTGTCTGCTGGTCATGGTTGTATGCTTCAGTATGCTTTGCTTCATCTTGCTGGATATGACAGTGTTCAGGTAGAAGATTTGAAGCAATTTCGTCAATGGGAGAGCAGAACCCCTGGACACCCTGAGAATTTTGAAACTCCTGGAATTGAAGTCACAACAGGTCCTCTTGGTCAGGGAATTGCCAATGCTGTTGGTTTAGCCCTTGCCGAGAAGCACTTAGCTGCCAGATTTAACAAGCCCGACAATGAGATCATCGATCATTACACGTATTGTATATTGGGTGATGGTTGTCAAATGGAGGGAATTGCAAATGAAGCTTGCTCACTTGCAGGACACTGGGGACTAGGGAAGCTAATAGCATTTTACGATGACAATCACATTTCTATTGACGGTGACACCGAAATCGCGTTCACTGAGAGTGTTGAAAAACGTTTTGAGGGACTTGGGTGGCATGTTATTTGGGTAAAGAATGGAAACACTGGCTTTGATGAAATTCGTGCTGCCATTAAGGAAGCAAAAGCTGTCAAAGACAGACCCACATTGATCAAGTTCACAACAACTATTGGTTATGGTTCTCCGAATAAATCCAACTCCTACAGTGTGCATGGAAGTGCACTTGGTGCCAAAGAAGTTGATGCCACAAGAAACAATCTTGGATGGCCATATGAGCCTTTCCACGTGCCCGAGGATGTCAAAAAGCATTGGAGTCGCCACATCCGTGAGGGTGCTGCTCTTGAATCTGAGTGGAATGCCAAGTTTGCTGAATATGAAAAGAAGTACAAGGAGGAAGCTGCCGTTTTGAAATCTATCATCAGTGGCGATTTACCTGCTGGTTGGGAGAAAGCACTTCCGACTTACACTCCAGAGATCCCTGCCGATGCAACCCGAAACCTATCGCAGCAAAACCTTAATGCCCTTGCGAATGTTCTTCCCGGTCTGATTGGCGGCAGTGCAGATCTTGCTTCTTCCAATATGACCTTGCTGAAAAAGTTTGGTGATTTCCAAAGTGATTCTCCAGCAGAGCGTAACGTTAGATTTGGTGTTAGAGAACATGGAATGGGAGCAATCAGCAATGGCATCGCTCTTCACAGCCGTGGACTTATTCCATACTGTGCAACCTTTTTTGTTTTCACCGACTACATGCGTGGTGCCATTAGGCTTTCCGCCCTATCCGAAGCCGGTGTTATATATGTCATGACTCACGATTCAATAGGACTTGGAGAGGATGGACCAACCCACCAGCCTATAGAGCACCTGGCAAGCTTCCGGGCAATGCCAAATATCTTGATGCTCCGTCCCGCTGATGGTAACGAAACAGCTGGGGCATACAAAGTTGCGGTGCTTAACAGGAAGAGACCCTCTATCCTTGCCCTTTCTAGACAAAAATTGCCTAACCTTGCCGGAACTTCTATTGAAGGAGTTGAAAAGGGTGGATACATCGTCTCTGACAACTCAACAGGAAACAAACCTGATGTCATTTTGATCGGAACCGGTTCCGAATTGGAAATTGCATACAAAGCTGGTGAGGATCTAAGAAAAGAAGGAAAGGCTGTTAGAGTTGTTTCCTTTGTTTCTTGGGAACTTTTTGATGAACAATCACAAGCTTACAAGGAGAGTGTTCTCCCTACTGCTGTTACGGCTAGGGTTAGCATTGAGGCCGGATCAACATTTGGGTGGGAGAAAATTGTTGGAAGCAAAGGAAAAGCAATCGGCATTGATCGTTTTGGAGCTAGTGCTCCTGCAGGAACAATATACAAAGAGTTTGGTATCACTAAAGAAGCTGTTATTGCTGCAGCAAAAGAGCTTATTTAG
Protein sequence

>Msa0529360

MSSTSTSLSLTNPNLTRLTSSPSTTRLSSLPSTITLNRTPTPTTHLSQSHHHLRHTAIHASVSAPPSTTTDSSLVEKSVNTIRFLAVDSVEKANSGHPGLPMGCAPMGHVLYDEVMRYNPKNPFWFNRDRFVLSAGHGCMLQYALLHLAGYDSVQVEDLKQFRQWESRTPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDNEIIDHYTYCILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAFTESVEKRFEGLGWHVIWVKNGNTGFDEIRAAIKEAKAVKDRPTLIKFTTTIGYGSPNKSNSYSVHGSALGAKEVDATRNNLGWPYEPFHVPEDVKKHWSRHIREGAALESEWNAKFAEYEKKYKEEAAVLKSIISGDLPAGWEKALPTYTPEIPADATRNLSQQNLNALANVLPGLIGGSADLASSNMTLLKKFGDFQSDSPAERNVRFGVREHGMGAISNGIALHSRGLIPYCATFFVFTDYMRGAIRLSALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLASFRAMPNILMLRPADGNETAGAYKVAVLNRKRPSILALSRQKLPNLAGTSIEGVEKGGYIVSDNSTGNKPDVILIGTGSELEIAYKAGEDLRKEGKAVRVVSFVSWELFDEQSQAYKESVLPTAVTARVSIEAGSTFGWEKIVGSKGKAIGIDRFGASAPAGTIYKEFGITKEAVIAAAKELI*