AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0546380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546380 MtrunA17_Chr4g0027971 96.875 192 6 0 1 192 1 192 3.00e-133 371
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546380 AT3G44890.1 68.020 197 58 1 1 192 1 197 1.56e-83 246

Find 50 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCAACTTGCTCAAATTT+TGG 0.185092 4_1:+38038997 Msa0546380:CDS
GACGACTAAGGGAATCTTAA+TGG 0.291997 4_1:+38040742 Msa0546380:three_prime_UTR
AGAAGAAGTGTTCAAGTTAG+AGG 0.296891 4_1:-38037632 None:intergenic
CCATATGCTAAATGCACAAT+TGG 0.338428 4_1:+38040597 Msa0546380:three_prime_UTR
CCAATTGTGCATTTAGCATA+TGG 0.351505 4_1:-38040597 None:intergenic
CTTCCTGAGATCAGGGAAAC+AGG 0.355646 4_1:+38040477 Msa0546380:CDS
TTGTTGAACTTCCTGAGATC+AGG 0.375491 4_1:+38040469 Msa0546380:CDS
GTGAAATTAGATTATATTGA+AGG 0.401514 4_1:+38037801 Msa0546380:intron
GGAATCAGTTGGGGCTTTCA+AGG 0.402616 4_1:+38039018 Msa0546380:CDS
CTCAGATGTGTGGACATTGT+TGG 0.412539 4_1:+38040772 Msa0546380:three_prime_UTR
AAGGAAGATATTGTTGATGT+TGG 0.414771 4_1:+38037820 Msa0546380:CDS
TGGCTCGGACGAGACGACTA+AGG 0.421821 4_1:+38040730 Msa0546380:three_prime_UTR
TTGGTTTCTGTTTAGTGTTA+CGG 0.433039 4_1:+38039145 Msa0546380:intron
ATTGTTGATGTTGGAAAGAA+AGG 0.441220 4_1:+38037829 Msa0546380:CDS
TTCACTTTAGCTGTAACCTC+AGG 0.447429 4_1:-38040528 None:intergenic
ATGTTTCATTTGTAGGGAGG+TGG 0.453964 4_1:+38040437 Msa0546380:intron
TCTCCTGTTTCCCTGATCTC+AGG 0.464623 4_1:-38040480 None:intergenic
GAACTTCTTGATGTCAAGGC+TGG 0.471943 4_1:+38037853 Msa0546380:CDS
CACACAATTGCATAAGTTGA+AGG 0.472260 4_1:+38040624 Msa0546380:three_prime_UTR
GGTAAAGGAAAACAAATCTT+CGG 0.476682 4_1:+38039055 Msa0546380:CDS
TTCCAGGGAATTGAAGATAG+AGG 0.477011 4_1:+38038587 Msa0546380:intron
GCAATCTGAGCTTTGCCACT+AGG 0.484790 4_1:-38037898 None:intergenic
GTTGTACTTAATGTTTATGA+TGG 0.485403 4_1:+38040868 Msa0546380:three_prime_UTR
GAAAACTGAATACACATTCA+AGG 0.491004 4_1:-38040832 None:intergenic
AGATCTTGTTGACATTATCA+AGG 0.516990 4_1:+38039172 Msa0546380:CDS
CATATGCTAAATGCACAATT+GGG 0.520371 4_1:+38040598 Msa0546380:three_prime_UTR
TTATCAAGGCACAGCTTCAA+AGG 0.528393 4_1:+38039186 Msa0546380:CDS
GATAGAGGAAGAAAGAATTG+AGG 0.529899 4_1:+38038602 Msa0546380:CDS
AATTGAGGCTGAGAAACAAC+GGG 0.535838 4_1:+38038617 Msa0546380:CDS
GTGAAGCGTAAAGGTGGTAA+AGG 0.535926 4_1:+38039040 Msa0546380:CDS
TGTTGAACTTCCTGAGATCA+GGG 0.538632 4_1:+38040470 Msa0546380:CDS
TATCATCATCACTCGAAAGA+TGG 0.539479 4_1:-38040654 None:intergenic
GGCTCGGACGAGACGACTAA+GGG 0.544558 4_1:+38040731 Msa0546380:three_prime_UTR
GCTTTCAAGGTGAAGCGTAA+AGG 0.548080 4_1:+38039031 Msa0546380:CDS
AGGTGAACTTCTTGATGTCA+AGG 0.553759 4_1:+38037849 Msa0546380:CDS
GAGGTGAAAGTGTGTTGCAA+TGG 0.588582 4_1:-38037613 None:intergenic
TCACTTTAGCTGTAACCTCA+GGG 0.605381 4_1:-38040527 None:intergenic
GAAGACAAAGAAAACTCGAA+AGG 0.611562 4_1:+38037699 Msa0546380:CDS
TGGACACTTTCTCAGATGTG+TGG 0.612493 4_1:+38040762 Msa0546380:three_prime_UTR
GAATTGAGGCTGAGAAACAA+CGG 0.614015 4_1:+38038616 Msa0546380:CDS
ACTGAATACACATTCAAGGA+GGG 0.620010 4_1:-38040828 None:intergenic
AAGGAAAACAAATCTTCGGA+AGG 0.620983 4_1:+38039059 Msa0546380:CDS
TGTAACTATAGCTCATGGCT+CGG 0.629840 4_1:+38040715 Msa0546380:three_prime_UTR
ATTTCTATAGGTAAAAGAAG+AGG 0.638826 4_1:+38038973 Msa0546380:intron
AACTGAATACACATTCAAGG+AGG 0.639565 4_1:-38040829 None:intergenic
TTCAAGGTGAAGCGTAAAGG+TGG 0.641294 4_1:+38039034 Msa0546380:CDS
TTGTGTTAACAAAACAACAA+TGG 0.649822 4_1:+38037564 Msa0546380:exon
CTGAATACACATTCAAGGAG+GGG 0.656837 4_1:-38040827 None:intergenic
AAAACAAAACACAGTTTGAG+CGG 0.658023 4_1:+38037541 Msa0546380:five_prime_UTR
AGAGTTAAAACTTCACCCTG+AGG 0.687129 4_1:+38040512 Msa0546380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTAGAAAAGTATAAAA+AGG - chr4_1:38039303-38039322 None:intergenic 10.0%
!!! TTTTATACTTTTCTAATAAT+TGG + chr4_1:38039303-38039322 Msa0546380:intron 10.0%
!!! TTTATACTTTTCTAATAATT+GGG + chr4_1:38039304-38039323 Msa0546380:intron 10.0%
!!! TTTTAATTTACATTAGTAGT+AGG + chr4_1:38037989-38038008 Msa0546380:intron 15.0%
!! AAGAAAAAGTTAAAATGAAA+AGG - chr4_1:38038568-38038587 None:intergenic 15.0%
!!! TTTATTGTTATTTTTTTGTC+TGG + chr4_1:38039385-38039404 Msa0546380:intron 15.0%
!!! TGACATTTTTATGTAAAAAT+AGG - chr4_1:38040082-38040101 None:intergenic 15.0%
!!! TGATGGTAATATTTTTTTTT+TGG + chr4_1:38040885-38040904 Msa0546380:three_prime_UTR 15.0%
!! GTGAAATTAGATTATATTGA+AGG + chr4_1:38037801-38037820 Msa0546380:intron 20.0%
!! AATTGCAAAATCTTAAAGTA+AGG - chr4_1:38037971-38037990 None:intergenic 20.0%
!!! ATTTTAACTTTTTCTTTCCA+GGG + chr4_1:38038572-38038591 Msa0546380:intron 20.0%
!! TTTAACTAAACGTTATCATA+AGG - chr4_1:38038685-38038704 None:intergenic 20.0%
!!! CTTCACTAAAATATTTTAGA+AGG - chr4_1:38038903-38038922 None:intergenic 20.0%
!!! TCTAAGTTTTACATTTCTAT+AGG + chr4_1:38038961-38038980 Msa0546380:intron 20.0%
!! AAAGGAATGTTATAACTTAT+AGG - chr4_1:38039285-38039304 None:intergenic 20.0%
!!! TTTGGTTTTTAAAAGAAAGA+GGG - chr4_1:38039573-38039592 None:intergenic 20.0%
!!! TTGAATCTTGAATTATTTTG+AGG + chr4_1:38040019-38040038 Msa0546380:intron 20.0%
!!! ATTTTCTATGTTTCATTTGT+AGG + chr4_1:38040430-38040449 Msa0546380:intron 20.0%
!!! TTTTCTATGTTTCATTTGTA+GGG + chr4_1:38040431-38040450 Msa0546380:intron 20.0%
!!! TAACATTTTTGTTTGTCTTT+TGG + chr4_1:38040801-38040820 Msa0546380:three_prime_UTR 20.0%
! TTGTGTTAACAAAACAACAA+TGG + chr4_1:38037564-38037583 Msa0546380:exon 25.0%
!! AATTTTCCAACAAAACTTCA+AGG + chr4_1:38037656-38037675 Msa0546380:CDS 25.0%
!!! AGAAATTTTTTGTTTCCTAG+TGG + chr4_1:38037883-38037902 Msa0546380:CDS 25.0%
! TAGAAACTCTTAAGAGAATT+TGG - chr4_1:38038278-38038297 None:intergenic 25.0%
!!! CATTTTAACTTTTTCTTTCC+AGG + chr4_1:38038571-38038590 Msa0546380:intron 25.0%
!! TTTTACCAAACAACTGATAA+GGG - chr4_1:38038658-38038677 None:intergenic 25.0%
!! ATTTTACCAAACAACTGATA+AGG - chr4_1:38038659-38038678 None:intergenic 25.0%
! ATTTCTATAGGTAAAAGAAG+AGG + chr4_1:38038973-38038992 Msa0546380:intron 25.0%
! GCATTAAGCATATTACTATT+TGG - chr4_1:38039363-38039382 None:intergenic 25.0%
! TATGAACCTTTCTTCAAAAT+TGG - chr4_1:38039423-38039442 None:intergenic 25.0%
!!! GTTTGGTTTTTAAAAGAAAG+AGG - chr4_1:38039574-38039593 None:intergenic 25.0%
! TAGCACTACTCAATATTAAT+AGG + chr4_1:38039638-38039657 Msa0546380:intron 25.0%
!! ATTTCTCTAAAGGATATATC+AGG - chr4_1:38039675-38039694 None:intergenic 25.0%
! ACTAAAAGGAATTTCTCTAA+AGG - chr4_1:38039685-38039704 None:intergenic 25.0%
!!! GAAATTCCTTTTAGTTTGAA+TGG + chr4_1:38039690-38039709 Msa0546380:intron 25.0%
! GAAATTCATCACAATGAATT+AGG - chr4_1:38039880-38039899 None:intergenic 25.0%
!! TTTTGTCAACTTTTTATAGC+TGG + chr4_1:38039967-38039986 Msa0546380:intron 25.0%
! ATAAGATTTGATTCACGATT+AGG + chr4_1:38040126-38040145 Msa0546380:intron 25.0%
! ACCACAAAAGAAAACTTTAT+AGG + chr4_1:38040216-38040235 Msa0546380:intron 25.0%
!! ACCTATAAAGTTTTCTTTTG+TGG - chr4_1:38040220-38040239 None:intergenic 25.0%
! TCTAAAAGCTAGAAGAAATT+TGG + chr4_1:38040302-38040321 Msa0546380:intron 25.0%
! GTTGTACTTAATGTTTATGA+TGG + chr4_1:38040868-38040887 Msa0546380:three_prime_UTR 25.0%
AAAACAAAACACAGTTTGAG+CGG + chr4_1:38037541-38037560 Msa0546380:five_prime_UTR 30.0%
!! TAAGAACCTTGAAGTTTTGT+TGG - chr4_1:38037665-38037684 None:intergenic 30.0%
AAGGAAGATATTGTTGATGT+TGG + chr4_1:38037820-38037839 Msa0546380:CDS 30.0%
ATTGTTGATGTTGGAAAGAA+AGG + chr4_1:38037829-38037848 Msa0546380:CDS 30.0%
ACATTAGTAGTAGGTTACTT+TGG + chr4_1:38037998-38038017 Msa0546380:intron 30.0%
! AGTTTATAGCTTTACATGCA+AGG - chr4_1:38038794-38038813 None:intergenic 30.0%
CTCGTAACAATGATATTCTA+CGG + chr4_1:38038812-38038831 Msa0546380:intron 30.0%
TATCTGATTATCTGCAGTTT+AGG + chr4_1:38038855-38038874 Msa0546380:intron 30.0%
TATGTCTTCAAATACACCTA+GGG - chr4_1:38038933-38038952 None:intergenic 30.0%
ATATGTCTTCAAATACACCT+AGG - chr4_1:38038934-38038953 None:intergenic 30.0%
!!! CTCAAATTTTGGAATCAGTT+GGG + chr4_1:38039008-38039027 Msa0546380:CDS 30.0%
!!! TCAAATTTTGGAATCAGTTG+GGG + chr4_1:38039009-38039028 Msa0546380:CDS 30.0%
GGTAAAGGAAAACAAATCTT+CGG + chr4_1:38039055-38039074 Msa0546380:CDS 30.0%
TAGGCACAATCATACATATA+TGG - chr4_1:38039121-38039140 None:intergenic 30.0%
CTAAACAGAAACCAAACATT+AGG - chr4_1:38039140-38039159 None:intergenic 30.0%
TTGGTTTCTGTTTAGTGTTA+CGG + chr4_1:38039145-38039164 Msa0546380:intron 30.0%
AGATCTTGTTGACATTATCA+AGG + chr4_1:38039172-38039191 Msa0546380:CDS 30.0%
!!! GTTATTTTTTTGTCTGGCTT+TGG + chr4_1:38039391-38039410 Msa0546380:intron 30.0%
AACCTTTCTTCAAAATTGGA+AGG - chr4_1:38039419-38039438 None:intergenic 30.0%
!! AACTCAATCGAAAAGTATTG+TGG - chr4_1:38039456-38039475 None:intergenic 30.0%
CTAAAGGATATATCAGGTAT+TGG - chr4_1:38039669-38039688 None:intergenic 30.0%
CCAATTCCATTCAAACTAAA+AGG - chr4_1:38039699-38039718 None:intergenic 30.0%
!!! CCTTTTAGTTTGAATGGAAT+TGG + chr4_1:38039696-38039715 Msa0546380:intron 30.0%
CAATGAATTAGGAGATAAGA+TGG - chr4_1:38039869-38039888 None:intergenic 30.0%
TACCTAAAATTAGTGTAGCT+AGG + chr4_1:38039940-38039959 Msa0546380:intron 30.0%
GTGGTATTATGTGTTAACTA+TGG - chr4_1:38040201-38040220 None:intergenic 30.0%
CAAATGAATCTACAGAATCA+TGG - chr4_1:38040256-38040275 None:intergenic 30.0%
!! ATTTCTAGTTCAGTTAGTCT+CGG + chr4_1:38040371-38040390 Msa0546380:intron 30.0%
CATATGCTAAATGCACAATT+GGG + chr4_1:38040598-38040617 Msa0546380:three_prime_UTR 30.0%
! GTTTTTGTAACTATAGCTCA+TGG + chr4_1:38040710-38040729 Msa0546380:three_prime_UTR 30.0%
GAAAACTGAATACACATTCA+AGG - chr4_1:38040835-38040854 None:intergenic 30.0%
! TGAATGTGTATTCAGTTTTC+AGG + chr4_1:38040835-38040854 Msa0546380:three_prime_UTR 30.0%
!! AGAAGAAGTGTTCAAGTTAG+AGG - chr4_1:38037635-38037654 None:intergenic 35.0%
GAAGACAAAGAAAACTCGAA+AGG + chr4_1:38037699-38037718 Msa0546380:CDS 35.0%
! GTGAAGGGTATATACTCTAT+AGG + chr4_1:38038211-38038230 Msa0546380:intron 35.0%
GAACCAACACTTCATATTGA+AGG + chr4_1:38038325-38038344 Msa0546380:intron 35.0%
ACACCTTCAATATGAAGTGT+TGG - chr4_1:38038331-38038350 None:intergenic 35.0%
TGGTATTCGTGTTTGTGTTA+AGG + chr4_1:38038457-38038476 Msa0546380:intron 35.0%
TCCAAAGACAATCAATGCAA+GGG - chr4_1:38038545-38038564 None:intergenic 35.0%
GATAGAGGAAGAAAGAATTG+AGG + chr4_1:38038602-38038621 Msa0546380:CDS 35.0%
!! AAGAGTGTTAAGAGTTCAAG+AGG + chr4_1:38038729-38038748 Msa0546380:intron 35.0%
TGTTAAGAGTTCAAGAGGAA+AGG + chr4_1:38038734-38038753 Msa0546380:intron 35.0%
! ATGCAAGGTTGTTTAGAACT+AGG - chr4_1:38038779-38038798 None:intergenic 35.0%
! TTAGTGAAGTTTTTACCCCT+AGG + chr4_1:38038914-38038933 Msa0546380:intron 35.0%
ATGTCTTCAAATACACCTAG+GGG - chr4_1:38038932-38038951 None:intergenic 35.0%
!! ACTGCAACTTGCTCAAATTT+TGG + chr4_1:38038997-38039016 Msa0546380:CDS 35.0%
!!! GCTCAAATTTTGGAATCAGT+TGG + chr4_1:38039007-38039026 Msa0546380:CDS 35.0%
AAGGAAAACAAATCTTCGGA+AGG + chr4_1:38039059-38039078 Msa0546380:CDS 35.0%
ATATGTTCTACCCAATTACG+AGG + chr4_1:38039083-38039102 Msa0546380:intron 35.0%
CAAAGTGAAACCTCGTAATT+GGG - chr4_1:38039096-38039115 None:intergenic 35.0%
ACAAAGTGAAACCTCGTAAT+TGG - chr4_1:38039097-38039116 None:intergenic 35.0%
GTATGATTGTGCCTAATGTT+TGG + chr4_1:38039126-38039145 Msa0546380:intron 35.0%
ATGTGCATCAGAAAGATGAA+TGG - chr4_1:38039214-38039233 None:intergenic 35.0%
!! AGCCTTCCAATTTTGAAGAA+AGG + chr4_1:38039414-38039433 Msa0546380:intron 35.0%
!! TTGTGTTTTGAGTAGCCAAT+AGG - chr4_1:38039513-38039532 None:intergenic 35.0%
! GCATACATTCCGATTTTCAT+GGG - chr4_1:38039548-38039567 None:intergenic 35.0%
! AGCATACATTCCGATTTTCA+TGG - chr4_1:38039549-38039568 None:intergenic 35.0%
ATCAATCGATAAGGATAAGC+AGG - chr4_1:38039789-38039808 None:intergenic 35.0%
GATTCATATACTGATGACCA+TGG - chr4_1:38039816-38039835 None:intergenic 35.0%
TACAAAGTCGATACACACTA+GGG - chr4_1:38039838-38039857 None:intergenic 35.0%
! TGCCTAGCTACACTAATTTT+AGG - chr4_1:38039945-38039964 None:intergenic 35.0%
CATCAAACGACAAAAGACAA+TGG - chr4_1:38039993-38040012 None:intergenic 35.0%
TTTGTTCATGAGTCATGACT+GGG + chr4_1:38040160-38040179 Msa0546380:intron 35.0%
TGAATCTACAGAATCATGGA+AGG - chr4_1:38040252-38040271 None:intergenic 35.0%
TCTATGTTTCATTTGTAGGG+AGG + chr4_1:38040434-38040453 Msa0546380:intron 35.0%
CCAATTGTGCATTTAGCATA+TGG - chr4_1:38040600-38040619 None:intergenic 35.0%
CCATATGCTAAATGCACAAT+TGG + chr4_1:38040597-38040616 Msa0546380:three_prime_UTR 35.0%
! CACACAATTGCATAAGTTGA+AGG + chr4_1:38040624-38040643 Msa0546380:three_prime_UTR 35.0%
TATCATCATCACTCGAAAGA+TGG - chr4_1:38040657-38040676 None:intergenic 35.0%
ACTGAATACACATTCAAGGA+GGG - chr4_1:38040831-38040850 None:intergenic 35.0%
AACTGAATACACATTCAAGG+AGG - chr4_1:38040832-38040851 None:intergenic 35.0%
AGGTGAACTTCTTGATGTCA+AGG + chr4_1:38037849-38037868 Msa0546380:CDS 40.0%
TCAGATCAAAGGTGGATACT+CGG - chr4_1:38038160-38038179 None:intergenic 40.0%
AGTGCTACATAGGTTACTAG+CGG + chr4_1:38038186-38038205 Msa0546380:intron 40.0%
! CTTCATATTGAAGGTGTGTC+TGG + chr4_1:38038334-38038353 Msa0546380:intron 40.0%
TGATGTGTCAGTGTTGTGTT+TGG + chr4_1:38038437-38038456 Msa0546380:intron 40.0%
!! TCCCTTGCATTGATTGTCTT+TGG + chr4_1:38038541-38038560 Msa0546380:intron 40.0%
GTCCAAAGACAATCAATGCA+AGG - chr4_1:38038546-38038565 None:intergenic 40.0%
TTCCAGGGAATTGAAGATAG+AGG + chr4_1:38038587-38038606 Msa0546380:intron 40.0%
TTCCTCTATCTTCAATTCCC+TGG - chr4_1:38038592-38038611 None:intergenic 40.0%
GAATTGAGGCTGAGAAACAA+CGG + chr4_1:38038616-38038635 Msa0546380:CDS 40.0%
AATTGAGGCTGAGAAACAAC+GGG + chr4_1:38038617-38038636 Msa0546380:CDS 40.0%
CTGATCCCTTATCAGTTGTT+TGG + chr4_1:38038650-38038669 Msa0546380:intron 40.0%
TTATCAAGGCACAGCTTCAA+AGG + chr4_1:38039186-38039205 Msa0546380:CDS 40.0%
! ATTTTCATGGGATACATGGG+AGG - chr4_1:38039536-38039555 None:intergenic 40.0%
! CCGATTTTCATGGGATACAT+GGG - chr4_1:38039539-38039558 None:intergenic 40.0%
CCCATGTATCCCATGAAAAT+CGG + chr4_1:38039536-38039555 Msa0546380:intron 40.0%
! TCCGATTTTCATGGGATACA+TGG - chr4_1:38039540-38039559 None:intergenic 40.0%
!! CATGGTGCTATCAATCGATA+AGG - chr4_1:38039798-38039817 None:intergenic 40.0%
! CTTATCGATTGATAGCACCA+TGG + chr4_1:38039796-38039815 Msa0546380:intron 40.0%
GTACAAAGTCGATACACACT+AGG - chr4_1:38039839-38039858 None:intergenic 40.0%
GTTTGTTCATGAGTCATGAC+TGG + chr4_1:38040159-38040178 Msa0546380:intron 40.0%
ATGTTTCATTTGTAGGGAGG+TGG + chr4_1:38040437-38040456 Msa0546380:intron 40.0%
TTGTTGAACTTCCTGAGATC+AGG + chr4_1:38040469-38040488 Msa0546380:CDS 40.0%
TGTTGAACTTCCTGAGATCA+GGG + chr4_1:38040470-38040489 Msa0546380:CDS 40.0%
AGAGTTAAAACTTCACCCTG+AGG + chr4_1:38040512-38040531 Msa0546380:CDS 40.0%
TCACTTTAGCTGTAACCTCA+GGG - chr4_1:38040530-38040549 None:intergenic 40.0%
TTCACTTTAGCTGTAACCTC+AGG - chr4_1:38040531-38040550 None:intergenic 40.0%
TGTAACTATAGCTCATGGCT+CGG + chr4_1:38040715-38040734 Msa0546380:three_prime_UTR 40.0%
GACGACTAAGGGAATCTTAA+TGG + chr4_1:38040742-38040761 Msa0546380:three_prime_UTR 40.0%
CTGAATACACATTCAAGGAG+GGG - chr4_1:38040830-38040849 None:intergenic 40.0%
! GAGGTGAAAGTGTGTTGCAA+TGG - chr4_1:38037616-38037635 None:intergenic 45.0%
GAACTTCTTGATGTCAAGGC+TGG + chr4_1:38037853-38037872 Msa0546380:CDS 45.0%
GTTACTAGAAGCAGAGACAC+CGG + chr4_1:38038025-38038044 Msa0546380:intron 45.0%
CTGACACTTCAGATCAAAGG+TGG - chr4_1:38038168-38038187 None:intergenic 45.0%
! GCACTGACACTTCAGATCAA+AGG - chr4_1:38038171-38038190 None:intergenic 45.0%
! CTGAAGTGTCAGTGCTACAT+AGG + chr4_1:38038176-38038195 Msa0546380:intron 45.0%
TAGGTTACTAGCGGTAGTGA+AGG + chr4_1:38038195-38038214 Msa0546380:intron 45.0%
AGGTTACTAGCGGTAGTGAA+GGG + chr4_1:38038196-38038215 Msa0546380:intron 45.0%
TGTCAAAGACCAACACGTGT+TGG - chr4_1:38038363-38038382 None:intergenic 45.0%
TGGTCTTTGACATCGAGACA+TGG + chr4_1:38038371-38038390 Msa0546380:intron 45.0%
GGTCTTTGACATCGAGACAT+GGG + chr4_1:38038372-38038391 Msa0546380:intron 45.0%
GCTTTCAAGGTGAAGCGTAA+AGG + chr4_1:38039031-38039050 Msa0546380:CDS 45.0%
TTCAAGGTGAAGCGTAAAGG+TGG + chr4_1:38039034-38039053 Msa0546380:CDS 45.0%
GTGAAGCGTAAAGGTGGTAA+AGG + chr4_1:38039040-38039059 Msa0546380:CDS 45.0%
ACCTCGCGAATGATTCCTAT+TGG + chr4_1:38039495-38039514 Msa0546380:intron 45.0%
AAACCAAACACGTAAGCCGT+CGG + chr4_1:38039585-38039604 Msa0546380:intron 45.0%
CACTTCGTGAAATTTCCCGA+CGG - chr4_1:38039604-38039623 None:intergenic 45.0%
TGGACACTTTCTCAGATGTG+TGG + chr4_1:38040762-38040781 Msa0546380:three_prime_UTR 45.0%
CTCAGATGTGTGGACATTGT+TGG + chr4_1:38040772-38040791 Msa0546380:three_prime_UTR 45.0%
GCAATCTGAGCTTTGCCACT+AGG - chr4_1:38037901-38037920 None:intergenic 50.0%
ACACGTGTCAGTGTTGTGTC+CGG - chr4_1:38038047-38038066 None:intergenic 50.0%
GTCTGGTATCCAACACGTGT+TGG + chr4_1:38038351-38038370 Msa0546380:intron 50.0%
GGAATCAGTTGGGGCTTTCA+AGG + chr4_1:38039018-38039037 Msa0546380:CDS 50.0%
GCCAATAGGAATCATTCGCG+AGG - chr4_1:38039499-38039518 None:intergenic 50.0%
AACCAAACACGTAAGCCGTC+GGG + chr4_1:38039586-38039605 Msa0546380:intron 50.0%
CTTCCTGAGATCAGGGAAAC+AGG + chr4_1:38040477-38040496 Msa0546380:CDS 50.0%
TCTCCTGTTTCCCTGATCTC+AGG - chr4_1:38040483-38040502 None:intergenic 50.0%
TTCCCGACGGCTTACGTGTT+TGG - chr4_1:38039591-38039610 None:intergenic 55.0%
! TGGCTCGGACGAGACGACTA+AGG + chr4_1:38040730-38040749 Msa0546380:three_prime_UTR 60.0%
GGCTCGGACGAGACGACTAA+GGG + chr4_1:38040731-38040750 Msa0546380:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 38037521 38040937 38037521 ID=Msa0546380;Name=Msa0546380
chr4_1 mRNA 38037521 38040937 38037521 ID=Msa0546380-mRNA-1;Parent=Msa0546380;Name=Msa0546380-mRNA-1;_AED=0.06;_eAED=0.06;_QI=62|1|1|1|1|1|6|365|192
chr4_1 exon 38037521 38037720 38037521 ID=Msa0546380-mRNA-1:exon:9691;Parent=Msa0546380-mRNA-1
chr4_1 exon 38037811 38037938 38037811 ID=Msa0546380-mRNA-1:exon:9692;Parent=Msa0546380-mRNA-1
chr4_1 exon 38038593 38038638 38038593 ID=Msa0546380-mRNA-1:exon:9693;Parent=Msa0546380-mRNA-1
chr4_1 exon 38038983 38039080 38038983 ID=Msa0546380-mRNA-1:exon:9694;Parent=Msa0546380-mRNA-1
chr4_1 exon 38039160 38039207 38039160 ID=Msa0546380-mRNA-1:exon:9695;Parent=Msa0546380-mRNA-1
chr4_1 exon 38040452 38040937 38040452 ID=Msa0546380-mRNA-1:exon:9696;Parent=Msa0546380-mRNA-1
chr4_1 five_prime_UTR 38037521 38037582 38037521 ID=Msa0546380-mRNA-1:five_prime_utr;Parent=Msa0546380-mRNA-1
chr4_1 CDS 38037583 38037720 38037583 ID=Msa0546380-mRNA-1:cds;Parent=Msa0546380-mRNA-1
chr4_1 CDS 38037811 38037938 38037811 ID=Msa0546380-mRNA-1:cds;Parent=Msa0546380-mRNA-1
chr4_1 CDS 38038593 38038638 38038593 ID=Msa0546380-mRNA-1:cds;Parent=Msa0546380-mRNA-1
chr4_1 CDS 38038983 38039080 38038983 ID=Msa0546380-mRNA-1:cds;Parent=Msa0546380-mRNA-1
chr4_1 CDS 38039160 38039207 38039160 ID=Msa0546380-mRNA-1:cds;Parent=Msa0546380-mRNA-1
chr4_1 CDS 38040452 38040572 38040452 ID=Msa0546380-mRNA-1:cds;Parent=Msa0546380-mRNA-1
chr4_1 three_prime_UTR 38040573 38040937 38040573 ID=Msa0546380-mRNA-1:three_prime_utr;Parent=Msa0546380-mRNA-1
Gene Sequence

>Msa0546380

ATGGCATCATCATCAACATTATCTTCACTTCCATTGCAACACACTTTCACCTCTAACTTGAACACTTCTTCTCAATTTTCCAACAAAACTTCAAGGTTCTTAATTTTCGCTCAAAAGAAGACAAAGAAAACTCGAAAGATTATATTGAAGGAAGATATTGTTGATGTTGGAAAGAAAGGTGAACTTCTTGATGTCAAGGCTGGATTTTTCAGAAATTTTTTGTTTCCTAGTGGCAAAGCTCAGATTGCAACTGCTGATTTGCTCAAGGAATTGAAGATAGAGGAAGAAAGAATTGAGGCTGAGAAACAACGGGTAAAAGAAGAGGCACTGCAACTTGCTCAAATTTTGGAATCAGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATCTTCGGAAGTGTTACGGCTCAAGATCTTGTTGACATTATCAAGGCACAGCTTCAAAGGGAGGTGGACAAGAGAATTGTTGAACTTCCTGAGATCAGGGAAACAGGAGAATATATTGCAGAGTTAAAACTTCACCCTGAGGTTACAGCTAAAGTGAAAGTGAATGTATTAGCTAACTGA

Protein sequence

>Msa0546380

MASSSTLSSLPLQHTFTSNLNTSSQFSNKTSRFLIFAQKKTKKTRKIILKEDIVDVGKKGELLDVKAGFFRNFLFPSGKAQIATADLLKELKIEEERIEAEKQRVKEEALQLAQILESVGAFKVKRKGGKGKQIFGSVTAQDLVDIIKAQLQREVDKRIVELPEIRETGEYIAELKLHPEVTAKVKVNVLAN*