Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1223810 | XP_003610500.1 | 94.884 | 215 | 6 | 1 | 1 | 210 | 1 | 215 | 1.78e-145 | 414 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1223810 | sp|Q8GYK2|SOBRL_ARATH | 74.762 | 210 | 48 | 1 | 3 | 207 | 47 | 256 | 1.34e-118 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000590 | Msa1223810 | -0.823880 | 1.091415e-53 | -8.615850e-47 |
| Msa0617450 | Msa1223810 | -0.803813 | 2.914061e-49 | -8.615850e-47 |
| Msa0618200 | Msa1223810 | 0.829016 | 6.515618e-55 | -8.615850e-47 |
| Msa0693790 | Msa1223810 | -0.800313 | 1.528131e-48 | -8.615850e-47 |
| Msa0700230 | Msa1223810 | -0.827862 | 1.237158e-54 | -8.615850e-47 |
| Msa0798810 | Msa1223810 | 0.808885 | 2.485766e-50 | -8.615850e-47 |
| Msa0387910 | Msa1223810 | -0.815662 | 8.241241e-52 | -8.615850e-47 |
| Msa0421260 | Msa1223810 | -0.821121 | 4.778851e-53 | -8.615850e-47 |
| Msa1002600 | Msa1223810 | 0.812852 | 3.441060e-51 | -8.615850e-47 |
| Msa0335320 | Msa1223810 | 0.815427 | 9.298767e-52 | -8.615850e-47 |
| Msa1223810 | Msa1338610 | -0.802576 | 5.253543e-49 | -8.615850e-47 |
| Msa1223810 | Msa1366650 | -0.810124 | 1.347005e-50 | -8.615850e-47 |
| Msa0565620 | Msa1223810 | 0.827380 | 1.615272e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1223810 | MtrunA17_Chr4g0075571 | 94.884 | 215 | 6 | 1 | 1 | 210 | 1 | 215 | 1.64e-149 | 414 |
| Msa1223810 | MtrunA17_Chr2g0306861 | 27.027 | 222 | 138 | 6 | 4 | 206 | 32 | 248 | 7.16e-17 | 76.6 |
| Msa1223810 | MtrunA17_Chr2g0332581 | 27.854 | 219 | 134 | 7 | 7 | 206 | 37 | 250 | 9.02e-17 | 76.3 |
| Msa1223810 | MtrunA17_Chr4g0003791 | 29.224 | 219 | 131 | 8 | 7 | 206 | 38 | 251 | 2.51e-16 | 75.5 |
| Msa1223810 | MtrunA17_Chr3g0138041 | 26.339 | 224 | 131 | 6 | 7 | 206 | 37 | 250 | 8.12e-15 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1223810 | AT4G22300.1 | 74.762 | 210 | 48 | 1 | 3 | 207 | 47 | 256 | 1.36e-119 | 340 |
| Msa1223810 | AT4G22305.1 | 68.075 | 213 | 63 | 1 | 3 | 210 | 2 | 214 | 1.14e-105 | 303 |
| Msa1223810 | AT4G22305.2 | 65.789 | 152 | 47 | 1 | 3 | 149 | 2 | 153 | 1.48e-67 | 207 |
| Msa1223810 | AT5G20060.1 | 28.959 | 221 | 134 | 6 | 4 | 206 | 33 | 248 | 4.55e-15 | 72.0 |
| Msa1223810 | AT5G20060.4 | 28.959 | 221 | 134 | 6 | 4 | 206 | 33 | 248 | 4.55e-15 | 72.0 |
| Msa1223810 | AT5G20060.3 | 28.959 | 221 | 134 | 6 | 4 | 206 | 33 | 248 | 4.55e-15 | 72.0 |
| Msa1223810 | AT5G20060.2 | 28.959 | 221 | 134 | 6 | 4 | 206 | 33 | 248 | 4.55e-15 | 72.0 |
| Msa1223810 | AT1G52700.4 | 28.767 | 219 | 132 | 7 | 7 | 206 | 27 | 240 | 1.74e-14 | 70.5 |
| Msa1223810 | AT1G52700.3 | 28.767 | 219 | 132 | 7 | 7 | 206 | 36 | 249 | 2.30e-14 | 70.1 |
| Msa1223810 | AT1G52700.2 | 28.767 | 219 | 132 | 7 | 7 | 206 | 36 | 249 | 2.30e-14 | 70.1 |
| Msa1223810 | AT3G15650.1 | 26.457 | 223 | 132 | 6 | 7 | 206 | 36 | 249 | 2.94e-13 | 67.0 |
| Msa1223810 | AT3G15650.3 | 26.457 | 223 | 132 | 6 | 7 | 206 | 46 | 259 | 3.39e-13 | 67.0 |
| Msa1223810 | AT1G18773.2 | 55.769 | 52 | 21 | 1 | 130 | 181 | 11 | 60 | 1.11e-12 | 61.2 |
| Msa1223810 | AT1G18773.1 | 55.769 | 52 | 21 | 1 | 130 | 181 | 11 | 60 | 1.18e-12 | 61.2 |
| Msa1223810 | AT1G18773.4 | 55.769 | 52 | 21 | 1 | 130 | 181 | 11 | 60 | 1.63e-12 | 61.2 |
| Msa1223810 | AT1G18773.3 | 55.769 | 52 | 21 | 1 | 130 | 181 | 11 | 60 | 1.68e-12 | 60.8 |
| Msa1223810 | AT3G15650.2 | 25.833 | 240 | 131 | 7 | 7 | 206 | 36 | 268 | 1.37e-11 | 62.8 |
Find 65 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGTTAGTTGCGAGTTTA+AGG | 0.172548 | 8_1:+88416651 | Msa1223810:CDS |
| TGTTGTTCACAATATTTAAT+AGG | 0.260593 | 8_1:+88416919 | Msa1223810:three_prime_UTR |
| CTGTTGTACCCTAAAACTTT+AGG | 0.267673 | 8_1:+88415867 | Msa1223810:CDS |
| CCACAGATAAATATATTGTT+AGG | 0.281460 | 8_1:-88415726 | None:intergenic |
| CAGCCCATGGGACCATAGTA+TGG | 0.302977 | 8_1:-88416569 | None:intergenic |
| ATGGTTCTGTAATGCCTTCA+TGG | 0.330844 | 8_1:+88414685 | Msa1223810:CDS |
| AAGCATATATTCAAATTATT+AGG | 0.331571 | 8_1:-88416847 | None:intergenic |
| AATAATATGCATACAGTTGC+AGG | 0.332819 | 8_1:-88413750 | None:intergenic |
| GTGATTGTTAACAGTAGAAT+TGG | 0.335173 | 8_1:-88413497 | None:intergenic |
| AGCAAACTATTCTCGTCGTT+TGG | 0.346185 | 8_1:-88415645 | None:intergenic |
| TCCTTCTGCTCCTCACGCTC+CGG | 0.418740 | 8_1:+88413724 | Msa1223810:CDS |
| GTTCTGTGGTTACACGGTCT+TGG | 0.419005 | 8_1:+88413626 | Msa1223810:CDS |
| TATTGTTTCAGTGACGTGTT+TGG | 0.420938 | 8_1:+88413435 | Msa1223810:intron |
| ATAAGTACCCGCTTAGCTTC+AGG | 0.433033 | 8_1:-88415951 | None:intergenic |
| TCTGTAACAGATGAATTAAA+CGG | 0.437889 | 8_1:-88415918 | None:intergenic |
| TGGTATTATTAGGCTTATCC+TGG | 0.441301 | 8_1:+88416750 | Msa1223810:intron |
| GTCTTGATGGGTTCATTGGC+AGG | 0.441657 | 8_1:-88413659 | None:intergenic |
| TAATGTCTTGATGGGTTCAT+TGG | 0.446375 | 8_1:-88413663 | None:intergenic |
| CTCCTCGTTGTTTATTGAGT+GGG | 0.455255 | 8_1:-88416778 | None:intergenic |
| AGAAGTGAATAATGTCTTGA+TGG | 0.461638 | 8_1:-88413672 | None:intergenic |
| TTTGGAATTCCGCCACGGCT+TGG | 0.463686 | 8_1:+88413453 | Msa1223810:five_prime_UTR |
| AGCAGAAGGAAAAGACCATT+TGG | 0.468754 | 8_1:-88413711 | None:intergenic |
| TCTTGATCTCATGTCATTGT+GGG | 0.469043 | 8_1:+88416950 | Msa1223810:three_prime_UTR |
| AGCTAAAGCATCTTGAGTCT+TGG | 0.470537 | 8_1:+88416799 | Msa1223810:CDS |
| CATACTATGGTCCCATGGGC+TGG | 0.472438 | 8_1:+88416570 | Msa1223810:CDS |
| CACAGATAAATATATTGTTA+GGG | 0.478705 | 8_1:-88415725 | None:intergenic |
| TTATACAGACACCCATACTA+TGG | 0.480186 | 8_1:+88416557 | Msa1223810:intron |
| CATTTGGTACTTCTGAATTG+AGG | 0.492380 | 8_1:-88413695 | None:intergenic |
| TGCATACAGTTGCAGGTGAC+CGG | 0.492555 | 8_1:-88413743 | None:intergenic |
| CTCAATTCAGAAGTACCAAA+TGG | 0.494388 | 8_1:+88413696 | Msa1223810:CDS |
| CATATATTCAAATTATTAGG+AGG | 0.518041 | 8_1:-88416844 | None:intergenic |
| GATTCGTTATACGCTCCGTC+AGG | 0.520956 | 8_1:+88413303 | Msa1223810:five_prime_UTR |
| ACAAAACTTCGAGCTGCCAT+TGG | 0.528338 | 8_1:-88413605 | None:intergenic |
| TTTATTGAGTGGGCAAGACC+AGG | 0.534942 | 8_1:-88416768 | None:intergenic |
| GCTCCTCGTTGTTTATTGAG+TGG | 0.540846 | 8_1:-88416779 | None:intergenic |
| TACCCTAAAACTTTAGGTGG+AGG | 0.541302 | 8_1:+88415873 | Msa1223810:CDS |
| AATTACACCTGAAGCTAAGC+GGG | 0.545193 | 8_1:+88415944 | Msa1223810:CDS |
| TTCTTGATCTCATGTCATTG+TGG | 0.550457 | 8_1:+88416949 | Msa1223810:three_prime_UTR |
| TTACACGGTCTTGGTGACTC+TGG | 0.551312 | 8_1:+88413635 | Msa1223810:CDS |
| GTTTATAACGTTCCAAGCCG+TGG | 0.557307 | 8_1:-88413465 | None:intergenic |
| ACCGGAGCGTGAGGAGCAGA+AGG | 0.561036 | 8_1:-88413725 | None:intergenic |
| GAAGTGAATAATGTCTTGAT+GGG | 0.571272 | 8_1:-88413671 | None:intergenic |
| GTTAGATAAACTTACGGCGG+GGG | 0.572303 | 8_1:-88413327 | None:intergenic |
| CACCCATACTATGGTCCCAT+GGG | 0.572624 | 8_1:+88416566 | Msa1223810:CDS |
| TCATGAATGTCAAACCATGA+AGG | 0.576481 | 8_1:-88414699 | None:intergenic |
| AAAACAGTATTGTTCGAGGC+AGG | 0.580046 | 8_1:+88416598 | Msa1223810:CDS |
| TTGTACCCTAAAACTTTAGG+TGG | 0.581553 | 8_1:+88415870 | Msa1223810:CDS |
| GCTAGACTTACAGCAGTCAC+AGG | 0.585127 | 8_1:-88414726 | None:intergenic |
| TCAACCACCTTAGACCCAGC+CGG | 0.589135 | 8_1:+88413271 | Msa1223810:five_prime_UTR |
| AGCCCATGGGACCATAGTAT+GGG | 0.591504 | 8_1:-88416568 | None:intergenic |
| TTCTCCGGCTGGGTCTAAGG+TGG | 0.598841 | 8_1:-88413275 | None:intergenic |
| CCTAACAATATATTTATCTG+TGG | 0.600349 | 8_1:+88415726 | Msa1223810:CDS |
| TGACAAAACAGTATTGTTCG+AGG | 0.612436 | 8_1:+88416594 | Msa1223810:CDS |
| TTAGATAAACTTACGGCGGG+GGG | 0.612718 | 8_1:-88413326 | None:intergenic |
| ATAGACAAGGAAGTAGCTGC+TGG | 0.614205 | 8_1:+88415696 | Msa1223810:CDS |
| GATCTCATGTCATTGTGGGA+AGG | 0.618408 | 8_1:+88416954 | Msa1223810:three_prime_UTR |
| GAAAATAGAGAAAGTCATAG+AGG | 0.619475 | 8_1:-88416892 | None:intergenic |
| ATTATTAGGAGGAACTCTGT+AGG | 0.635045 | 8_1:-88416833 | None:intergenic |
| GAGAAAGTCATAGAGGTCAG+CGG | 0.643692 | 8_1:-88416885 | None:intergenic |
| TATAACGTTCCAAGCCGTGG+CGG | 0.660943 | 8_1:-88413462 | None:intergenic |
| ACGTGTTTGGAATTCCGCCA+CGG | 0.661265 | 8_1:+88413448 | Msa1223810:five_prime_UTR |
| TGTTCATGCTACAATAGACA+AGG | 0.664047 | 8_1:+88415683 | Msa1223810:CDS |
| CAGAACACTAGCCAATGTCA+AGG | 0.665097 | 8_1:-88415847 | None:intergenic |
| AAATTACACCTGAAGCTAAG+CGG | 0.677674 | 8_1:+88415943 | Msa1223810:CDS |
| TGCCCACTCAATAAACAACG+AGG | 0.786416 | 8_1:+88416776 | Msa1223810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAATTATTGTTTAATTTT+GGG | + | chr8_1:88414974-88414993 | Msa1223810:intron | 10.0% |
| !! | TGTAAAATTAGGTAAATATT+TGG | - | chr8_1:88414314-88414333 | None:intergenic | 15.0% |
| !!! | CAACATAATTTTGTAAAATT+AGG | - | chr8_1:88414325-88414344 | None:intergenic | 15.0% |
| !! | TTAATATCTCATTTGTAATT+TGG | - | chr8_1:88414567-88414586 | None:intergenic | 15.0% |
| !!! | ATAATATCATTTTCTAAAGT+CGG | - | chr8_1:88414641-88414660 | None:intergenic | 15.0% |
| !!! | GTTGAATTATTGTTTAATTT+TGG | + | chr8_1:88414973-88414992 | Msa1223810:intron | 15.0% |
| !!! | CTAAAAAGTATATATAACAA+AGG | - | chr8_1:88415304-88415323 | None:intergenic | 15.0% |
| !!! | ATATATCCATTTTTCTATTA+AGG | - | chr8_1:88415787-88415806 | None:intergenic | 15.0% |
| !! | TATTAACTTTCTGTATTTAA+AGG | - | chr8_1:88416204-88416223 | None:intergenic | 15.0% |
| !! | TAAATCATTATGTTATATGT+AGG | + | chr8_1:88416415-88416434 | Msa1223810:intron | 15.0% |
| !! | AAATCATTATGTTATATGTA+GGG | + | chr8_1:88416416-88416435 | Msa1223810:intron | 15.0% |
| !!! | ATTTGATTTATTGAATTTTC+TGG | + | chr8_1:88416487-88416506 | Msa1223810:intron | 15.0% |
| !! | GAAAAAATAACCAAATTATA+GGG | - | chr8_1:88416691-88416710 | None:intergenic | 15.0% |
| !! | TGAAAAAATAACCAAATTAT+AGG | - | chr8_1:88416692-88416711 | None:intergenic | 15.0% |
| !! | AAGCATATATTCAAATTATT+AGG | - | chr8_1:88416850-88416869 | None:intergenic | 15.0% |
| !! | TCGATAATAATTAAGAAAAG+AGG | - | chr8_1:88413792-88413811 | None:intergenic | 20.0% |
| !! | ACATATTAGTATAGCTTATA+TGG | + | chr8_1:88414093-88414112 | Msa1223810:intron | 20.0% |
| !! | TTTATTAAAATATGACCTTG+CGG | + | chr8_1:88414213-88414232 | Msa1223810:intron | 20.0% |
| !!! | TAATATCATTTTCTAAAGTC+GGG | - | chr8_1:88414640-88414659 | None:intergenic | 20.0% |
| !!! | TTTTGTTTATTCTTTGTAGA+TGG | + | chr8_1:88414666-88414685 | Msa1223810:intron | 20.0% |
| !! | TTGTACAGAATTAATATACA+GGG | - | chr8_1:88414804-88414823 | None:intergenic | 20.0% |
| !! | ATTGTACAGAATTAATATAC+AGG | - | chr8_1:88414805-88414824 | None:intergenic | 20.0% |
| !! | AATGTAGTAAGAATACAATT+TGG | + | chr8_1:88414931-88414950 | Msa1223810:intron | 20.0% |
| !! | TTACTAAGTTAACAATTAAG+AGG | - | chr8_1:88415139-88415158 | None:intergenic | 20.0% |
| !! | ACATCATATAACAATCTTAA+AGG | + | chr8_1:88415465-88415484 | Msa1223810:intron | 20.0% |
| !! | CACAGATAAATATATTGTTA+GGG | - | chr8_1:88415728-88415747 | None:intergenic | 20.0% |
| !! | TTATGTGGAAATATTTAGTT+TGG | + | chr8_1:88416086-88416105 | Msa1223810:intron | 20.0% |
| !!! | AAATAAATATGCTGTTTCAA+AGG | - | chr8_1:88416124-88416143 | None:intergenic | 20.0% |
| !!! | GTCGATAATATTTTCAATTT+AGG | + | chr8_1:88416362-88416381 | Msa1223810:intron | 20.0% |
| !! | TATTGACATTTGGTATTATT+AGG | + | chr8_1:88416740-88416759 | Msa1223810:intron | 20.0% |
| !! | CATATATTCAAATTATTAGG+AGG | - | chr8_1:88416847-88416866 | None:intergenic | 20.0% |
| !! | TGTTGTTCACAATATTTAAT+AGG | + | chr8_1:88416919-88416938 | Msa1223810:three_prime_UTR | 20.0% |
| ! | AGAGTTGTTAGATAAACTTA+CGG | - | chr8_1:88413336-88413355 | None:intergenic | 25.0% |
| !! | TTATTATGAAACGTGGTTTT+GGG | - | chr8_1:88413557-88413576 | None:intergenic | 25.0% |
| !! | ATTATTATGAAACGTGGTTT+TGG | - | chr8_1:88413558-88413577 | None:intergenic | 25.0% |
| ! | AGAAGAATTATTATGAAACG+TGG | - | chr8_1:88413564-88413583 | None:intergenic | 25.0% |
| ! | AAACTAAACCTATGTAACAA+TGG | - | chr8_1:88413844-88413863 | None:intergenic | 25.0% |
| ! | CTCAAAACAATTTAAAGACA+TGG | - | chr8_1:88414037-88414056 | None:intergenic | 25.0% |
| ! | TAGTATAGCTTATATGGAAA+TGG | + | chr8_1:88414099-88414118 | Msa1223810:intron | 25.0% |
| ! | AAATATTTGGACATGTATTG+TGG | - | chr8_1:88414301-88414320 | None:intergenic | 25.0% |
| ! | ATAAATAAAACCAACTACCA+AGG | - | chr8_1:88414466-88414485 | None:intergenic | 25.0% |
| ! | AGGACAGATCATATATTAAT+AGG | - | chr8_1:88414502-88414521 | None:intergenic | 25.0% |
| ! | TTCTGTACAATTAATCATGA+AGG | + | chr8_1:88414814-88414833 | Msa1223810:intron | 25.0% |
| ! | TCTGTACAATTAATCATGAA+GGG | + | chr8_1:88414815-88414834 | Msa1223810:intron | 25.0% |
| !!! | ATCCTTATTTTTAGTATGCT+TGG | + | chr8_1:88414869-88414888 | Msa1223810:intron | 25.0% |
| !!! | TCCTTATTTTTAGTATGCTT+GGG | + | chr8_1:88414870-88414889 | Msa1223810:intron | 25.0% |
| !! | TGATTTTGTACATTTATCGT+GGG | + | chr8_1:88415045-88415064 | Msa1223810:intron | 25.0% |
| ! | TAGTAAGCAAACAATTATTG+AGG | - | chr8_1:88415208-88415227 | None:intergenic | 25.0% |
| ! | TATATGATGTTTACAAGACA+TGG | - | chr8_1:88415455-88415474 | None:intergenic | 25.0% |
| ! | CCACAGATAAATATATTGTT+AGG | - | chr8_1:88415729-88415748 | None:intergenic | 25.0% |
| ! | CCTAACAATATATTTATCTG+TGG | + | chr8_1:88415726-88415745 | Msa1223810:CDS | 25.0% |
| ! | TCTGTAACAGATGAATTAAA+CGG | - | chr8_1:88415921-88415940 | None:intergenic | 25.0% |
| ! | TAAATTAGTGTCTTGACAAA+TGG | - | chr8_1:88416448-88416467 | None:intergenic | 25.0% |
| ! | AAGACACTAATTTATATAGC+TGG | + | chr8_1:88416454-88416473 | Msa1223810:intron | 25.0% |
| !!! | AACTAACACCAATTTTTTCA+AGG | - | chr8_1:88416642-88416661 | None:intergenic | 25.0% |
| ! | TCCATATCAATATTGACATT+TGG | + | chr8_1:88416730-88416749 | Msa1223810:intron | 25.0% |
| ! | ACCAAATGTCAATATTGATA+TGG | - | chr8_1:88416734-88416753 | None:intergenic | 25.0% |
| ! | AAGAAAAGAAAAAGAAAAGG+AGG | - | chr8_1:88416993-88417012 | None:intergenic | 25.0% |
| !! | TCCTTTTCTTTTTCTTTTCT+TGG | + | chr8_1:88416992-88417011 | Msa1223810:three_prime_UTR | 25.0% |
| ! | ACCAAGAAAAGAAAAAGAAA+AGG | - | chr8_1:88416996-88417015 | None:intergenic | 25.0% |
| !!! | ATAACGAATCTTGTTTTCTC+CGG | - | chr8_1:88413293-88413312 | None:intergenic | 30.0% |
| CACTGAAACAATAAAGGAAA+AGG | - | chr8_1:88413428-88413447 | None:intergenic | 30.0% | |
| GTGATTGTTAACAGTAGAAT+TGG | - | chr8_1:88413500-88413519 | None:intergenic | 30.0% | |
| !! | TATTATGAAACGTGGTTTTG+GGG | - | chr8_1:88413556-88413575 | None:intergenic | 30.0% |
| TTCTTCTTCTTCTGTAGTAA+CGG | + | chr8_1:88413577-88413596 | Msa1223810:intron | 30.0% | |
| GAAGTGAATAATGTCTTGAT+GGG | - | chr8_1:88413674-88413693 | None:intergenic | 30.0% | |
| AGAAGTGAATAATGTCTTGA+TGG | - | chr8_1:88413675-88413694 | None:intergenic | 30.0% | |
| AATAATATGCATACAGTTGC+AGG | - | chr8_1:88413753-88413772 | None:intergenic | 30.0% | |
| GATAATAATATTCCCAGAAG+GGG | - | chr8_1:88413923-88413942 | None:intergenic | 30.0% | |
| GGATAATAATATTCCCAGAA+GGG | - | chr8_1:88413924-88413943 | None:intergenic | 30.0% | |
| TGGATAATAATATTCCCAGA+AGG | - | chr8_1:88413925-88413944 | None:intergenic | 30.0% | |
| ! | TTCTGGGAATATTATTATCC+AGG | + | chr8_1:88413924-88413943 | Msa1223810:intron | 30.0% |
| TCTGGGAATATTATTATCCA+GGG | + | chr8_1:88413925-88413944 | Msa1223810:intron | 30.0% | |
| ! | AATAGTCTCAAATGTGCTTT+TGG | - | chr8_1:88413986-88414005 | None:intergenic | 30.0% |
| ! | GACTATTTGTTAGAGCTTTA+AGG | + | chr8_1:88413999-88414018 | Msa1223810:intron | 30.0% |
| !! | TGTTAGAGCTTTAAGGAAAA+AGG | + | chr8_1:88414006-88414025 | Msa1223810:intron | 30.0% |
| AAACTATCATGTAGAGCTTA+TGG | - | chr8_1:88414067-88414086 | None:intergenic | 30.0% | |
| ACATGCTCATGGAATTAATT+AGG | + | chr8_1:88414406-88414425 | Msa1223810:intron | 30.0% | |
| !!! | CCTTATTTTTAGTATGCTTG+GGG | + | chr8_1:88414871-88414890 | Msa1223810:intron | 30.0% |
| !!! | GTTTAATTTTGGGTTACTAG+AGG | + | chr8_1:88414984-88415003 | Msa1223810:intron | 30.0% |
| ! | GTGATTTTGTACATTTATCG+TGG | + | chr8_1:88415044-88415063 | Msa1223810:intron | 30.0% |
| TTCACTTGAGAAAGATGAAA+AGG | - | chr8_1:88415269-88415288 | None:intergenic | 30.0% | |
| TTTGAACTAAAAACAGAGAG+AGG | - | chr8_1:88415493-88415512 | None:intergenic | 30.0% | |
| !! | CAATTACTTTTATCCTCTTC+AGG | + | chr8_1:88415559-88415578 | Msa1223810:intron | 30.0% |
| ! | TGTAGCATGAACATTTTGAA+CGG | - | chr8_1:88415676-88415695 | None:intergenic | 30.0% |
| !! | AAATATGCTGTTTCAAAGGA+CGG | - | chr8_1:88416120-88416139 | None:intergenic | 30.0% |
| ! | CACATAAGGTTTTCTCTATT+GGG | - | chr8_1:88416179-88416198 | None:intergenic | 30.0% |
| ! | ACACATAAGGTTTTCTCTAT+TGG | - | chr8_1:88416180-88416199 | None:intergenic | 30.0% |
| ! | TGTATTTAAAGGCACACATA+AGG | - | chr8_1:88416193-88416212 | None:intergenic | 30.0% |
| TTAAAGAAAACCAGTTGAAC+TGG | - | chr8_1:88416266-88416285 | None:intergenic | 30.0% | |
| !!! | TCAACTGGTTTTCTTTAATC+AGG | + | chr8_1:88416268-88416287 | Msa1223810:intron | 30.0% |
| !!! | CAACTGGTTTTCTTTAATCA+GGG | + | chr8_1:88416269-88416288 | Msa1223810:intron | 30.0% |
| TAATGATTTATTCGAGTGCA+AGG | - | chr8_1:88416405-88416424 | None:intergenic | 30.0% | |
| ! | CAGGTCAACAAAATTTTAGA+TGG | - | chr8_1:88416523-88416542 | None:intergenic | 30.0% |
| !! | CATCTAAAATTTTGTTGACC+TGG | + | chr8_1:88416521-88416540 | Msa1223810:intron | 30.0% |
| TATAACATTGTGTACATACC+AGG | - | chr8_1:88416542-88416561 | None:intergenic | 30.0% | |
| !!! | AATTTTTTCAAGGAAAGGAG+GGG | - | chr8_1:88416632-88416651 | None:intergenic | 30.0% |
| !!! | CAATTTTTTCAAGGAAAGGA+GGG | - | chr8_1:88416633-88416652 | None:intergenic | 30.0% |
| !!! | ACACCAATTTTTTCAAGGAA+AGG | - | chr8_1:88416637-88416656 | None:intergenic | 30.0% |
| ATTCCAAGTTCCCTATAATT+TGG | + | chr8_1:88416678-88416697 | Msa1223810:intron | 30.0% | |
| TAACCAAATTATAGGGAACT+TGG | - | chr8_1:88416684-88416703 | None:intergenic | 30.0% | |
| TTGATATGGACAGAATTGTA+GGG | - | chr8_1:88416720-88416739 | None:intergenic | 30.0% | |
| ATTGATATGGACAGAATTGT+AGG | - | chr8_1:88416721-88416740 | None:intergenic | 30.0% | |
| GAAAATAGAGAAAGTCATAG+AGG | - | chr8_1:88416895-88416914 | None:intergenic | 30.0% | |
| CAAAAAGCAAAACTATACCA+AGG | - | chr8_1:88417036-88417055 | None:intergenic | 30.0% | |
| !! | TTTTTGTCTGCATTGGTATA+TGG | + | chr8_1:88417050-88417069 | Msa1223810:three_prime_UTR | 30.0% |
| TTGTTAGATAAACTTACGGC+GGG | - | chr8_1:88413332-88413351 | None:intergenic | 35.0% | |
| GTTGTTAGATAAACTTACGG+CGG | - | chr8_1:88413333-88413352 | None:intergenic | 35.0% | |
| ACACGTCACTGAAACAATAA+AGG | - | chr8_1:88413434-88413453 | None:intergenic | 35.0% | |
| TATTGTTTCAGTGACGTGTT+TGG | + | chr8_1:88413435-88413454 | Msa1223810:intron | 35.0% | |
| ! | TGTAGTAACGGAAAAACCAA+TGG | + | chr8_1:88413589-88413608 | Msa1223810:intron | 35.0% |
| !!! | AGTTTTGTTCTGTGGTTACA+CGG | + | chr8_1:88413620-88413639 | Msa1223810:CDS | 35.0% |
| !! | TAATGTCTTGATGGGTTCAT+TGG | - | chr8_1:88413666-88413685 | None:intergenic | 35.0% |
| CATTTGGTACTTCTGAATTG+AGG | - | chr8_1:88413698-88413717 | None:intergenic | 35.0% | |
| !! | CTCAATTCAGAAGTACCAAA+TGG | + | chr8_1:88413696-88413715 | Msa1223810:CDS | 35.0% |
| AAATTGAAGCTGCTCTGTTA+TGG | + | chr8_1:88413895-88413914 | Msa1223810:intron | 35.0% | |
| AAGTCAATTCAAAATGACCC+TGG | - | chr8_1:88413945-88413964 | None:intergenic | 35.0% | |
| ACAATTTCTGATTCTGAGTG+AGG | + | chr8_1:88414439-88414458 | Msa1223810:intron | 35.0% | |
| GAAAACTCAAGTCTAGACAT+AGG | - | chr8_1:88414534-88414553 | None:intergenic | 35.0% | |
| ! | ATCACTTGAGATGCCATTTA+TGG | + | chr8_1:88414588-88414607 | Msa1223810:intron | 35.0% |
| ! | TCACTTGAGATGCCATTTAT+GGG | + | chr8_1:88414589-88414608 | Msa1223810:intron | 35.0% |
| TCATGAATGTCAAACCATGA+AGG | - | chr8_1:88414702-88414721 | None:intergenic | 35.0% | |
| CCCCAAGCATACTAAAAATA+AGG | - | chr8_1:88414874-88414893 | None:intergenic | 35.0% | |
| AAATCACACTTACTGTCATG+TGG | - | chr8_1:88415031-88415050 | None:intergenic | 35.0% | |
| TTCAACTATCCACTTGACAA+TGG | + | chr8_1:88415079-88415098 | Msa1223810:intron | 35.0% | |
| TCAACTATCCACTTGACAAT+GGG | + | chr8_1:88415080-88415099 | Msa1223810:intron | 35.0% | |
| CAGTTATAGTCAGTACAATG+TGG | - | chr8_1:88415234-88415253 | None:intergenic | 35.0% | |
| !!! | AAGCACCAAAGTTTTGGTTT+AGG | - | chr8_1:88415382-88415401 | None:intergenic | 35.0% |
| !! | ACCAAAACTTTGGTGCTTAT+TGG | + | chr8_1:88415384-88415403 | Msa1223810:intron | 35.0% |
| ! | ACCAATAAGCACCAAAGTTT+TGG | - | chr8_1:88415388-88415407 | None:intergenic | 35.0% |
| TGTTCATGCTACAATAGACA+AGG | + | chr8_1:88415683-88415702 | Msa1223810:CDS | 35.0% | |
| ATTTATCTGTGGTTCAGTCA+AGG | + | chr8_1:88415737-88415756 | Msa1223810:intron | 35.0% | |
| ! | CATTTTTCTATTAAGGACGC+GGG | - | chr8_1:88415780-88415799 | None:intergenic | 35.0% |
| !! | CCATTTTTCTATTAAGGACG+CGG | - | chr8_1:88415781-88415800 | None:intergenic | 35.0% |
| !! | AAATGGTGACATTGTTTTGC+AGG | + | chr8_1:88415822-88415841 | Msa1223810:intron | 35.0% |
| CTGTTGTACCCTAAAACTTT+AGG | + | chr8_1:88415867-88415886 | Msa1223810:CDS | 35.0% | |
| TTGTACCCTAAAACTTTAGG+TGG | + | chr8_1:88415870-88415889 | Msa1223810:CDS | 35.0% | |
| AAATTACACCTGAAGCTAAG+CGG | + | chr8_1:88415943-88415962 | Msa1223810:CDS | 35.0% | |
| CAATCAGAGAAAATGGATAC+GGG | - | chr8_1:88416050-88416069 | None:intergenic | 35.0% | |
| GCAATCAGAGAAAATGGATA+CGG | - | chr8_1:88416051-88416070 | None:intergenic | 35.0% | |
| CACATAAACATTTGATGCAG+AGG | - | chr8_1:88416073-88416092 | None:intergenic | 35.0% | |
| CTCTGCATCAAATGTTTATG+TGG | + | chr8_1:88416071-88416090 | Msa1223810:intron | 35.0% | |
| ! | TAAGGTTTTCTCTATTGGGT+CGG | - | chr8_1:88416175-88416194 | None:intergenic | 35.0% |
| TGAACTGGAATGCTTTACTA+TGG | - | chr8_1:88416251-88416270 | None:intergenic | 35.0% | |
| ! | TGGTTTTCTTTAATCAGGGT+CGG | + | chr8_1:88416273-88416292 | Msa1223810:intron | 35.0% |
| TGTATACCGATGACAACAAT+AGG | - | chr8_1:88416299-88416318 | None:intergenic | 35.0% | |
| TGATAAGTGTAATCGTTCCA+AGG | - | chr8_1:88416327-88416346 | None:intergenic | 35.0% | |
| TTATACAGACACCCATACTA+TGG | + | chr8_1:88416557-88416576 | Msa1223810:intron | 35.0% | |
| TGACAAAACAGTATTGTTCG+AGG | + | chr8_1:88416594-88416613 | Msa1223810:CDS | 35.0% | |
| !!! | CCAATTTTTTCAAGGAAAGG+AGG | - | chr8_1:88416634-88416653 | None:intergenic | 35.0% |
| CCTCCTTTCCTTGAAAAAAT+TGG | + | chr8_1:88416631-88416650 | Msa1223810:CDS | 35.0% | |
| TGATATGGACAGAATTGTAG+GGG | - | chr8_1:88416719-88416738 | None:intergenic | 35.0% | |
| TGGTATTATTAGGCTTATCC+TGG | + | chr8_1:88416750-88416769 | Msa1223810:intron | 35.0% | |
| ATTATTAGGAGGAACTCTGT+AGG | - | chr8_1:88416836-88416855 | None:intergenic | 35.0% | |
| TTCTTGATCTCATGTCATTG+TGG | + | chr8_1:88416949-88416968 | Msa1223810:three_prime_UTR | 35.0% | |
| TCTTGATCTCATGTCATTGT+GGG | + | chr8_1:88416950-88416969 | Msa1223810:three_prime_UTR | 35.0% | |
| !!! | GTTTTGCTTTTTGTCTGCAT+TGG | + | chr8_1:88417043-88417062 | Msa1223810:three_prime_UTR | 35.0% |
| TGTTAGATAAACTTACGGCG+GGG | - | chr8_1:88413331-88413350 | None:intergenic | 40.0% | |
| AGCAGAAGGAAAAGACCATT+TGG | - | chr8_1:88413714-88413733 | None:intergenic | 40.0% | |
| ! | TGTCTGTGCCATTGTTACAT+AGG | + | chr8_1:88413833-88413852 | Msa1223810:intron | 40.0% |
| ! | ACAGAGCAGCTTCAATTTTG+TGG | - | chr8_1:88413893-88413912 | None:intergenic | 40.0% |
| AGTCTAGACATAGGTGGAAT+AGG | - | chr8_1:88414525-88414544 | None:intergenic | 40.0% | |
| AACTCAAGTCTAGACATAGG+TGG | - | chr8_1:88414531-88414550 | None:intergenic | 40.0% | |
| ! | CTAGACTTGAGTTTTCTGCT+TGG | + | chr8_1:88414538-88414557 | Msa1223810:intron | 40.0% |
| GCTAATAGGTTGCCCATAAA+TGG | - | chr8_1:88414604-88414623 | None:intergenic | 40.0% | |
| GAAGCTGATTGCAAGCTAAT+AGG | - | chr8_1:88414618-88414637 | None:intergenic | 40.0% | |
| ! | ATGGTTCTGTAATGCCTTCA+TGG | + | chr8_1:88414685-88414704 | Msa1223810:CDS | 40.0% |
| CACAGCAGAAATGTGGAAAA+TGG | - | chr8_1:88414908-88414927 | None:intergenic | 40.0% | |
| ! | CATTTTGCACAGCAGAAATG+TGG | - | chr8_1:88414915-88414934 | None:intergenic | 40.0% |
| TTGTACATTTATCGTGGGTG+TGG | + | chr8_1:88415050-88415069 | Msa1223810:intron | 40.0% | |
| AACTCATTCCCATTGTCAAG+TGG | - | chr8_1:88415091-88415110 | None:intergenic | 40.0% | |
| TTGCACCGTTCTCTTATAGA+TGG | + | chr8_1:88415349-88415368 | Msa1223810:intron | 40.0% | |
| GTGCACCATCTATAAGAGAA+CGG | - | chr8_1:88415357-88415376 | None:intergenic | 40.0% | |
| CACCTCCTAAACCAAAACTT+TGG | + | chr8_1:88415374-88415393 | Msa1223810:intron | 40.0% | |
| !!! | CACCAAAGTTTTGGTTTAGG+AGG | - | chr8_1:88415379-88415398 | None:intergenic | 40.0% |
| CACAAGTCAAATTGCTCAAC+AGG | - | chr8_1:88415539-88415558 | None:intergenic | 40.0% | |
| TCAACATCATCATCCTGAAG+AGG | - | chr8_1:88415575-88415594 | None:intergenic | 40.0% | |
| AGCAAACTATTCTCGTCGTT+TGG | - | chr8_1:88415648-88415667 | None:intergenic | 40.0% | |
| CCGCGTCCTTAATAGAAAAA+TGG | + | chr8_1:88415778-88415797 | Msa1223810:intron | 40.0% | |
| ATGAGCAACCTGCTGATAAA+TGG | + | chr8_1:88415805-88415824 | Msa1223810:intron | 40.0% | |
| CAATGTCACCATTTATCAGC+AGG | - | chr8_1:88415816-88415835 | None:intergenic | 40.0% | |
| TACCCTAAAACTTTAGGTGG+AGG | + | chr8_1:88415873-88415892 | Msa1223810:CDS | 40.0% | |
| AATTACACCTGAAGCTAAGC+GGG | + | chr8_1:88415944-88415963 | Msa1223810:CDS | 40.0% | |
| ! | GTAAAGCATTCCAGTTCAAC+TGG | + | chr8_1:88416253-88416272 | Msa1223810:intron | 40.0% |
| CATCGGTATACAATTGTCCT+TGG | + | chr8_1:88416307-88416326 | Msa1223810:intron | 40.0% | |
| TGCAAGGCTCATATCAAAAG+TGG | - | chr8_1:88416389-88416408 | None:intergenic | 40.0% | |
| AAAACAGTATTGTTCGAGGC+AGG | + | chr8_1:88416598-88416617 | Msa1223810:CDS | 40.0% | |
| ! | TGGTGTTAGTTGCGAGTTTA+AGG | + | chr8_1:88416651-88416670 | Msa1223810:CDS | 40.0% |
| CTCCTCGTTGTTTATTGAGT+GGG | - | chr8_1:88416781-88416800 | None:intergenic | 40.0% | |
| ! | AGCTAAAGCATCTTGAGTCT+TGG | + | chr8_1:88416799-88416818 | Msa1223810:CDS | 40.0% |
| CTCTCAAAAACACTACTCCT+TGG | + | chr8_1:88417016-88417035 | Msa1223810:three_prime_UTR | 40.0% | |
| !!! | GAATCTTGTTTTCTCCGGCT+GGG | - | chr8_1:88413288-88413307 | None:intergenic | 45.0% |
| TTAGATAAACTTACGGCGGG+GGG | - | chr8_1:88413329-88413348 | None:intergenic | 45.0% | |
| GTTAGATAAACTTACGGCGG+GGG | - | chr8_1:88413330-88413349 | None:intergenic | 45.0% | |
| GTTTATAACGTTCCAAGCCG+TGG | - | chr8_1:88413468-88413487 | None:intergenic | 45.0% | |
| ACAAAACTTCGAGCTGCCAT+TGG | - | chr8_1:88413608-88413627 | None:intergenic | 45.0% | |
| !!! | CAGCTCGAAGTTTTGTTCTG+TGG | + | chr8_1:88413612-88413631 | Msa1223810:CDS | 45.0% |
| TGTAACAATGGCACAGACAC+CGG | - | chr8_1:88413832-88413851 | None:intergenic | 45.0% | |
| CATACGATATGAAAGCCGCA+AGG | - | chr8_1:88414231-88414250 | None:intergenic | 45.0% | |
| TGTGTGTAATGCGCTAAGGA+CGG | - | chr8_1:88414389-88414408 | None:intergenic | 45.0% | |
| AGCATGTGTGTAATGCGCTA+AGG | - | chr8_1:88414393-88414412 | None:intergenic | 45.0% | |
| CTAGACATAGGTGGAATAGG+AGG | - | chr8_1:88414522-88414541 | None:intergenic | 45.0% | |
| ! | TTTGGGTTACTAGAGGAGAC+TGG | + | chr8_1:88414991-88415010 | Msa1223810:intron | 45.0% |
| ATTTATCGTGGGTGTGGACA+TGG | + | chr8_1:88415056-88415075 | Msa1223810:intron | 45.0% | |
| ATAGACAAGGAAGTAGCTGC+TGG | + | chr8_1:88415696-88415715 | Msa1223810:CDS | 45.0% | |
| TATCTGTGGTTCAGTCAAGG+AGG | + | chr8_1:88415740-88415759 | Msa1223810:intron | 45.0% | |
| ! | TTTTGCAGGTGCCTTGACAT+TGG | + | chr8_1:88415836-88415855 | Msa1223810:intron | 45.0% |
| CAGAACACTAGCCAATGTCA+AGG | - | chr8_1:88415850-88415869 | None:intergenic | 45.0% | |
| ! | CGCCTCCACCTAAAGTTTTA+GGG | - | chr8_1:88415878-88415897 | None:intergenic | 45.0% |
| ATAAGTACCCGCTTAGCTTC+AGG | - | chr8_1:88415954-88415973 | None:intergenic | 45.0% | |
| GCAGAGGCAATCAGAGAAAA+TGG | - | chr8_1:88416057-88416076 | None:intergenic | 45.0% | |
| ! | GTCGGTGTACTTTTGATGGA+TGG | - | chr8_1:88416157-88416176 | None:intergenic | 45.0% |
| ! | TTGGGTCGGTGTACTTTTGA+TGG | - | chr8_1:88416161-88416180 | None:intergenic | 45.0% |
| TTTATTGAGTGGGCAAGACC+AGG | - | chr8_1:88416771-88416790 | None:intergenic | 45.0% | |
| TGCCCACTCAATAAACAACG+AGG | + | chr8_1:88416776-88416795 | Msa1223810:CDS | 45.0% | |
| GCTCCTCGTTGTTTATTGAG+TGG | - | chr8_1:88416782-88416801 | None:intergenic | 45.0% | |
| GAGAAAGTCATAGAGGTCAG+CGG | - | chr8_1:88416888-88416907 | None:intergenic | 45.0% | |
| GATCTCATGTCATTGTGGGA+AGG | + | chr8_1:88416954-88416973 | Msa1223810:three_prime_UTR | 45.0% | |
| !!! | CGAATCTTGTTTTCTCCGGC+TGG | - | chr8_1:88413289-88413308 | None:intergenic | 50.0% |
| GATTCGTTATACGCTCCGTC+AGG | + | chr8_1:88413303-88413322 | Msa1223810:five_prime_UTR | 50.0% | |
| ! | ACGTGTTTGGAATTCCGCCA+CGG | + | chr8_1:88413448-88413467 | Msa1223810:five_prime_UTR | 50.0% |
| TATAACGTTCCAAGCCGTGG+CGG | - | chr8_1:88413465-88413484 | None:intergenic | 50.0% | |
| GTTCTGTGGTTACACGGTCT+TGG | + | chr8_1:88413626-88413645 | Msa1223810:CDS | 50.0% | |
| ! | TTACACGGTCTTGGTGACTC+TGG | + | chr8_1:88413635-88413654 | Msa1223810:CDS | 50.0% |
| !! | GTCTTGATGGGTTCATTGGC+AGG | - | chr8_1:88413662-88413681 | None:intergenic | 50.0% |
| TGCATACAGTTGCAGGTGAC+CGG | - | chr8_1:88413746-88413765 | None:intergenic | 50.0% | |
| TCTGTTATGGCTCCCCTTCT+GGG | + | chr8_1:88413908-88413927 | Msa1223810:intron | 50.0% | |
| GTGTGTAATGCGCTAAGGAC+GGG | - | chr8_1:88414388-88414407 | None:intergenic | 50.0% | |
| GCGCATTACACACATGCTCA+TGG | + | chr8_1:88414395-88414414 | Msa1223810:intron | 50.0% | |
| CTGATTCTGAGTGAGGTCCT+TGG | + | chr8_1:88414446-88414465 | Msa1223810:intron | 50.0% | |
| ! | TGAGTGAGGTCCTTGGTAGT+TGG | + | chr8_1:88414453-88414472 | Msa1223810:intron | 50.0% |
| GCTAGACTTACAGCAGTCAC+AGG | - | chr8_1:88414729-88414748 | None:intergenic | 50.0% | |
| ! | GCGCCTCCACCTAAAGTTTT+AGG | - | chr8_1:88415879-88415898 | None:intergenic | 50.0% |
| !! | AGGCGCTGTTTTCAGTGGTT+GGG | + | chr8_1:88415893-88415912 | Msa1223810:CDS | 50.0% |
| GGTCGGCCTATTGTTGTCAT+CGG | + | chr8_1:88416290-88416309 | Msa1223810:intron | 50.0% | |
| ACACCCATACTATGGTCCCA+TGG | + | chr8_1:88416565-88416584 | Msa1223810:CDS | 50.0% | |
| CACCCATACTATGGTCCCAT+GGG | + | chr8_1:88416566-88416585 | Msa1223810:CDS | 50.0% | |
| AGCCCATGGGACCATAGTAT+GGG | - | chr8_1:88416571-88416590 | None:intergenic | 50.0% | |
| ! | TGTTTTGTCAGCCAGCCCAT+GGG | - | chr8_1:88416584-88416603 | None:intergenic | 50.0% |
| TCAACCACCTTAGACCCAGC+CGG | + | chr8_1:88413271-88413290 | Msa1223810:five_prime_UTR | 55.0% | |
| ! | GTTTTCTCCGGCTGGGTCTA+AGG | - | chr8_1:88413281-88413300 | None:intergenic | 55.0% |
| ! | TTTGGAATTCCGCCACGGCT+TGG | + | chr8_1:88413453-88413472 | Msa1223810:five_prime_UTR | 55.0% |
| GATGCTGAGCTTCTCGTGTC+CGG | + | chr8_1:88413810-88413829 | Msa1223810:intron | 55.0% | |
| CTCTGTTATGGCTCCCCTTC+TGG | + | chr8_1:88413907-88413926 | Msa1223810:intron | 55.0% | |
| TAATGCGCTAAGGACGGGTC+TGG | - | chr8_1:88414383-88414402 | None:intergenic | 55.0% | |
| GGTTACTAGAGGAGACTGGC+AGG | + | chr8_1:88414995-88415014 | Msa1223810:intron | 55.0% | |
| !!! | GAGGCGCTGTTTTCAGTGGT+TGG | + | chr8_1:88415892-88415911 | Msa1223810:CDS | 55.0% |
| CAGCCCATGGGACCATAGTA+TGG | - | chr8_1:88416572-88416591 | None:intergenic | 55.0% | |
| CATACTATGGTCCCATGGGC+TGG | + | chr8_1:88416570-88416589 | Msa1223810:CDS | 55.0% | |
| ! | CTGTTTTGTCAGCCAGCCCA+TGG | - | chr8_1:88416585-88416604 | None:intergenic | 55.0% |
| TTCTCCGGCTGGGTCTAAGG+TGG | - | chr8_1:88413278-88413297 | None:intergenic | 60.0% | |
| TCCTTCTGCTCCTCACGCTC+CGG | + | chr8_1:88413724-88413743 | Msa1223810:CDS | 60.0% | |
| AAGGACGGGTCTGGTGGAAC+TGG | - | chr8_1:88414374-88414393 | None:intergenic | 60.0% | |
| !!! | GGTGGAGGCGCTGTTTTCAG+TGG | + | chr8_1:88415888-88415907 | Msa1223810:CDS | 60.0% |
| ACCGGAGCGTGAGGAGCAGA+AGG | - | chr8_1:88413728-88413747 | None:intergenic | 65.0% | |
| TTGCAGGTGACCGGAGCGTG+AGG | - | chr8_1:88413737-88413756 | None:intergenic | 65.0% | |
| TGCGCTAAGGACGGGTCTGG+TGG | - | chr8_1:88414380-88414399 | None:intergenic | 65.0% | |
| ACTTACGGCGGGGGGCCTGA+CGG | - | chr8_1:88413321-88413340 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 88413255 | 88417089 | 88413255 | ID=Msa1223810;Name=Msa1223810 |
| chr8_1 | mRNA | 88413255 | 88417089 | 88413255 | ID=Msa1223810-mRNA-1;Parent=Msa1223810;Name=Msa1223810-mRNA-1;_AED=0.11;_eAED=0.11;_QI=156|0.85|0.87|1|0.57|0.62|8|238|210 |
| chr8_1 | exon | 88413255 | 88413334 | 88413255 | ID=Msa1223810-mRNA-1:exon:32096;Parent=Msa1223810-mRNA-1 |
| chr8_1 | exon | 88413446 | 88413507 | 88413446 | ID=Msa1223810-mRNA-1:exon:32097;Parent=Msa1223810-mRNA-1 |
| chr8_1 | exon | 88413594 | 88413758 | 88413594 | ID=Msa1223810-mRNA-1:exon:32098;Parent=Msa1223810-mRNA-1 |
| chr8_1 | exon | 88414685 | 88414737 | 88414685 | ID=Msa1223810-mRNA-1:exon:32099;Parent=Msa1223810-mRNA-1 |
| chr8_1 | exon | 88415639 | 88415747 | 88415639 | ID=Msa1223810-mRNA-1:exon:32100;Parent=Msa1223810-mRNA-1 |
| chr8_1 | exon | 88415844 | 88415965 | 88415844 | ID=Msa1223810-mRNA-1:exon:32101;Parent=Msa1223810-mRNA-1 |
| chr8_1 | exon | 88416565 | 88416672 | 88416565 | ID=Msa1223810-mRNA-1:exon:32102;Parent=Msa1223810-mRNA-1 |
| chr8_1 | exon | 88416762 | 88417089 | 88416762 | ID=Msa1223810-mRNA-1:exon:32103;Parent=Msa1223810-mRNA-1 |
| chr8_1 | five_prime_UTR | 88413255 | 88413334 | 88413255 | ID=Msa1223810-mRNA-1:five_prime_utr;Parent=Msa1223810-mRNA-1 |
| chr8_1 | five_prime_UTR | 88413446 | 88413507 | 88413446 | ID=Msa1223810-mRNA-1:five_prime_utr;Parent=Msa1223810-mRNA-1 |
| chr8_1 | five_prime_UTR | 88413594 | 88413607 | 88413594 | ID=Msa1223810-mRNA-1:five_prime_utr;Parent=Msa1223810-mRNA-1 |
| chr8_1 | CDS | 88413608 | 88413758 | 88413608 | ID=Msa1223810-mRNA-1:cds;Parent=Msa1223810-mRNA-1 |
| chr8_1 | CDS | 88414685 | 88414737 | 88414685 | ID=Msa1223810-mRNA-1:cds;Parent=Msa1223810-mRNA-1 |
| chr8_1 | CDS | 88415639 | 88415747 | 88415639 | ID=Msa1223810-mRNA-1:cds;Parent=Msa1223810-mRNA-1 |
| chr8_1 | CDS | 88415844 | 88415965 | 88415844 | ID=Msa1223810-mRNA-1:cds;Parent=Msa1223810-mRNA-1 |
| chr8_1 | CDS | 88416565 | 88416672 | 88416565 | ID=Msa1223810-mRNA-1:cds;Parent=Msa1223810-mRNA-1 |
| chr8_1 | CDS | 88416762 | 88416851 | 88416762 | ID=Msa1223810-mRNA-1:cds;Parent=Msa1223810-mRNA-1 |
| chr8_1 | three_prime_UTR | 88416852 | 88417089 | 88416852 | ID=Msa1223810-mRNA-1:three_prime_utr;Parent=Msa1223810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
