AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1366650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366650 MtrunA17_Chr4g0057141 98.361 488 3 1 1 483 157 644 0.0 1003
Msa1366650 MtrunA17_Chr1g0185891 96.926 488 10 1 1 483 96 583 0.0 993
Msa1366650 MtrunA17_Chr8g0361561 33.226 310 193 4 181 480 107 412 2.92e-52 182
Msa1366650 MtrunA17_Chr4g0067151 27.660 329 211 10 169 483 6 321 5.60e-34 130
Msa1366650 MtrunA17_Chr1g0185501 25.163 306 216 8 182 483 16 312 6.79e-30 119
Msa1366650 MtrunA17_Chr7g0253861 26.730 318 220 9 167 480 32 340 8.49e-27 110
Msa1366650 MtrunA17_Chr8g0383711 27.832 309 204 10 181 485 6 299 1.42e-25 106
Msa1366650 MtrunA17_Chr4g0058091 25.962 312 206 8 181 483 218 513 4.45e-25 108
Msa1366650 MtrunA17_Chr3g0116561 26.471 306 214 8 180 483 212 508 3.66e-24 105
Msa1366650 MtrunA17_Chr7g0246741 26.132 287 188 9 191 459 367 647 4.11e-19 90.9
Msa1366650 MtrunA17_Chr2g0295791 26.299 308 195 12 190 483 167 456 6.76e-19 89.4
Msa1366650 MtrunA17_Chr6g0448921 30.380 158 102 5 184 339 92 243 1.48e-16 82.8
Msa1366650 MtrunA17_Chr6g0448921 22.727 286 201 9 189 464 12 287 2.46e-14 75.9
Msa1366650 MtrunA17_Chr6g0448921 24.868 189 135 4 295 483 31 212 6.80e-13 71.2
Msa1366650 MtrunA17_Chr6g0448921 31.538 130 80 4 183 309 133 256 2.70e-11 66.2
Msa1366650 MtrunA17_Chr1g0183051 25.000 320 223 11 170 483 195 503 2.18e-16 81.6
Msa1366650 MtrunA17_Chr1g0200901 25.329 304 204 14 186 483 73 359 1.71e-15 78.2
Msa1366650 MtrunA17_Chr1g0176241 23.622 381 201 11 184 483 110 481 2.06e-15 78.6
Msa1366650 MtrunA17_Chr5g0442391 21.317 319 238 8 175 488 243 553 3.91e-15 77.8
Msa1366650 MtrunA17_Chr2g0281451 29.545 176 114 7 184 357 91 258 5.36e-15 78.2
Msa1366650 MtrunA17_Chr2g0281451 23.810 189 137 4 295 483 30 211 3.46e-12 69.3
Msa1366650 MtrunA17_Chr2g0281451 22.867 293 198 10 186 464 8 286 2.93e-11 66.2
Msa1366650 MtrunA17_Chr3g0099061 23.824 319 217 11 182 483 202 511 1.36e-14 76.3
Msa1366650 MtrunA17_Chr3g0144511 24.127 315 215 10 188 483 60 369 6.42e-14 73.2
Msa1366650 MtrunA17_Chr8g0361541 38.272 81 50 0 372 452 16 96 8.34e-14 67.8
Msa1366650 MtrunA17_Chr8g0392701 21.014 276 193 9 181 440 54 320 5.69e-13 70.1
Msa1366650 MtrunA17_Chr4g0069701 23.125 320 211 14 184 483 347 651 8.28e-13 71.2
Msa1366650 MtrunA17_Chr4g0059031 21.683 309 215 11 197 487 316 615 4.08e-12 68.9
Msa1366650 MtrunA17_Chr2g0308391 21.429 322 228 8 182 483 115 431 1.91e-11 65.9
Msa1366650 MtrunA17_Chr1g0162961 24.339 189 117 5 184 350 109 293 4.94e-11 64.7
Msa1366650 MtrunA17_Chr2g0322171 28.125 160 96 6 209 352 161 317 9.69e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366650 AT1G10580.1 81.988 483 86 1 1 483 91 572 0.0 822
Msa1366650 AT5G54520.1 32.915 319 204 3 173 483 140 456 3.41e-55 191
Msa1366650 AT3G49660.1 25.641 312 214 9 180 483 11 312 1.39e-30 121
Msa1366650 AT3G49660.1 28.767 219 145 6 185 398 105 317 1.11e-25 107
Msa1366650 AT5G64730.1 27.508 309 201 11 181 483 6 297 2.09e-27 112
Msa1366650 AT2G43770.1 26.460 291 206 7 190 477 50 335 4.96e-26 108
Msa1366650 AT4G15900.1 29.967 307 183 12 191 483 174 462 1.63e-25 109
Msa1366650 AT4G02730.1 24.595 309 215 10 182 483 32 329 1.39e-24 104
Msa1366650 AT3G16650.1 28.990 307 185 13 191 483 168 455 1.62e-21 97.8
Msa1366650 AT5G50230.1 24.038 312 212 8 181 483 213 508 2.81e-20 94.0
Msa1366650 AT5G08560.1 23.453 307 222 8 181 483 262 559 1.45e-17 85.9
Msa1366650 AT5G08560.2 23.453 307 222 8 181 483 262 559 1.45e-17 85.9
Msa1366650 AT5G08560.3 23.453 307 222 8 181 483 262 559 1.45e-17 85.9
Msa1366650 AT1G15440.2 23.203 306 215 7 191 480 347 648 6.26e-17 84.3
Msa1366650 AT5G43920.1 24.688 320 218 12 177 483 204 513 6.69e-17 84.0
Msa1366650 AT1G15440.1 23.203 306 215 7 191 480 387 688 9.29e-17 84.0
Msa1366650 AT5G23430.3 23.656 279 189 10 186 460 9 267 1.35e-16 83.6
Msa1366650 AT5G23430.3 30.000 150 97 5 184 331 92 235 3.43e-14 75.9
Msa1366650 AT5G23430.3 25.000 192 131 4 295 483 31 212 2.88e-12 69.7
Msa1366650 AT5G23430.3 29.921 127 86 3 183 309 133 256 7.81e-11 65.1
Msa1366650 AT5G23430.2 23.656 279 189 10 186 460 9 267 1.35e-16 83.6
Msa1366650 AT5G23430.2 30.000 150 97 5 184 331 92 235 3.43e-14 75.9
Msa1366650 AT5G23430.2 25.000 192 131 4 295 483 31 212 2.88e-12 69.7
Msa1366650 AT5G23430.2 29.921 127 86 3 183 309 133 256 7.81e-11 65.1
Msa1366650 AT5G23430.1 23.656 279 189 10 186 460 9 267 1.42e-16 83.2
Msa1366650 AT5G23430.1 30.000 150 97 5 184 331 92 235 3.40e-14 75.9
Msa1366650 AT5G23430.1 25.000 192 131 4 295 483 31 212 2.98e-12 69.7
Msa1366650 AT5G23430.1 29.921 127 86 3 183 309 133 256 7.95e-11 65.1
Msa1366650 AT1G61210.3 31.429 175 112 6 184 357 91 258 2.47e-16 82.8
Msa1366650 AT1G61210.3 25.547 274 180 9 191 460 13 266 1.02e-14 77.8
Msa1366650 AT5G08390.1 24.188 277 190 9 186 460 9 267 3.32e-16 82.0
Msa1366650 AT5G08390.1 32.000 150 94 5 184 331 92 235 5.54e-15 78.2
Msa1366650 AT5G08390.1 25.000 192 131 4 295 483 31 212 1.87e-12 70.5
Msa1366650 AT5G08390.1 32.283 127 83 3 183 309 133 256 6.00e-12 68.6
Msa1366650 AT1G61210.2 31.429 175 112 6 184 357 91 258 4.29e-16 82.0
Msa1366650 AT1G61210.2 25.547 274 180 9 191 460 13 266 2.23e-14 76.6
Msa1366650 AT1G61210.1 31.429 175 112 6 184 357 91 258 4.57e-16 82.0
Msa1366650 AT1G61210.1 25.547 274 180 9 191 460 13 266 2.55e-14 76.3
Msa1366650 AT1G11160.4 24.742 291 195 9 186 464 8 286 4.67e-15 78.6
Msa1366650 AT1G11160.4 27.684 177 120 6 184 359 91 260 1.85e-14 76.6
Msa1366650 AT1G11160.4 25.397 189 134 4 295 483 30 211 6.12e-14 75.1
Msa1366650 AT1G11160.2 24.742 291 195 9 186 464 8 286 4.70e-15 78.6
Msa1366650 AT1G11160.2 27.684 177 120 6 184 359 91 260 1.99e-14 76.6
Msa1366650 AT1G11160.2 25.397 189 134 4 295 483 30 211 6.72e-14 75.1
Msa1366650 AT1G11160.1 24.742 291 195 9 186 464 8 286 5.09e-15 78.6
Msa1366650 AT1G11160.1 27.684 177 120 6 184 359 91 260 2.30e-14 76.6
Msa1366650 AT1G11160.1 25.397 189 134 4 295 483 30 211 6.44e-14 75.1
Msa1366650 AT1G11160.3 27.684 177 120 6 184 359 49 218 1.56e-14 77.0
Msa1366650 AT1G11160.3 26.543 162 112 5 322 483 15 169 5.70e-12 68.9
Msa1366650 AT3G18130.1 24.535 269 178 10 190 440 60 321 4.55e-14 73.6
Msa1366650 AT3G18130.1 25.185 270 184 9 191 452 13 272 4.24e-12 67.8
Msa1366650 AT5G52820.1 24.497 298 204 10 190 483 191 471 2.17e-13 72.8
Msa1366650 AT1G48630.1 24.907 269 177 11 190 440 60 321 4.54e-13 70.5
Msa1366650 AT1G48630.1 24.542 273 188 9 188 452 10 272 2.35e-12 68.6
Msa1366650 AT5G16750.1 25.444 169 118 5 188 351 55 220 4.79e-13 72.4
Msa1366650 AT2G33340.2 25.591 254 173 9 184 431 255 498 1.27e-12 70.5
Msa1366650 AT2G33340.1 25.591 254 173 9 184 431 255 498 1.27e-12 70.5
Msa1366650 AT2G41500.1 23.320 253 178 7 235 483 253 493 1.71e-12 70.1
Msa1366650 AT2G41500.1 25.472 212 152 6 185 395 331 537 1.54e-11 67.0
Msa1366650 AT2G41500.2 23.320 253 178 7 235 483 253 493 1.71e-12 70.1
Msa1366650 AT2G41500.2 25.472 212 152 6 185 395 331 537 1.54e-11 67.0
Msa1366650 AT1G73720.1 24.451 319 214 12 182 483 201 509 3.12e-12 69.3
Msa1366650 AT3G21540.1 23.864 264 174 12 233 483 402 651 5.70e-12 68.9
Msa1366650 AT1G18080.1 22.695 282 161 7 188 461 10 242 5.88e-12 67.4
Msa1366650 AT1G18080.1 22.388 268 186 8 190 440 60 322 1.13e-11 66.2
Msa1366650 AT1G79990.1 22.460 187 141 3 209 393 72 256 9.63e-12 68.2
Msa1366650 AT1G79990.2 22.460 187 141 3 209 393 72 256 1.01e-11 68.2
Msa1366650 AT2G33340.3 27.011 174 117 6 184 352 255 423 2.06e-11 66.6
Msa1366650 AT5G60940.2 22.812 320 225 9 181 483 19 333 4.31e-11 64.7
Msa1366650 AT5G60940.1 22.812 320 225 9 181 483 111 425 7.72e-11 64.3

Find 16 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGCACATGCATAATAAAT+TGG 0.219312 tig0018481:-5430 None:intergenic
CTTGTTGATTTGGTCTTCCT+TGG 0.298656 tig0018481:+5148 Msa1366650:three_prime_UTR
TGTTCAATGATGCCTGTTGC+TGG 0.303386 tig0018481:+5055 Msa1366650:exon
AGTGGATTCACTTGTTGATT+TGG 0.306593 tig0018481:+5138 Msa1366650:three_prime_UTR
CCACTATGTTGCTACTCCTT+TGG 0.379138 tig0018481:-5120 None:intergenic
TGCTACTTAGTTCCAGCAAC+AGG 0.405287 tig0018481:-5067 None:intergenic
CTCAATTAGCATGTAATGCT+TGG 0.478189 tig0018481:-5231 None:intergenic
TTTGGTCTTCCTTGGCTCAA+CGG 0.512441 tig0018481:+5156 Msa1366650:three_prime_UTR
AATTAAACTGCAACATGACA+TGG 0.513441 tig0018481:-5344 None:intergenic
CCAAAGGAGTAGCAACATAG+TGG 0.541915 tig0018481:+5120 Msa1366650:three_prime_UTR
CAATTAATGCCGTTGAGCCA+AGG 0.564503 tig0018481:-5165 None:intergenic
CTGGAACTAAGTAGCAGAAG+CGG 0.602263 tig0018481:+5074 Msa1366650:three_prime_UTR
TGGAACTAAGTAGCAGAAGC+GGG 0.606107 tig0018481:+5075 Msa1366650:three_prime_UTR
CGGGTAGACAGAACACCACA+TGG 0.627746 tig0018481:+5094 Msa1366650:three_prime_UTR
GAACACCACATGGCGACCAA+AGG 0.627815 tig0018481:+5104 Msa1366650:three_prime_UTR
CTACTCCTTTGGTCGCCATG+TGG 0.638075 tig0018481:-5109 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTATGTAAAATTTTATT+TGG + tig0018481:1840-1859 Msa1366650:intron 10.0%
!! TGAATATAATTTAATACTAT+GGG - tig0018481:4385-4404 None:intergenic 10.0%
!! ATGATAAGAATATTAAGTAT+TGG + tig0018481:866-885 Msa1366650:CDS 15.0%
!! TGATAAGAATATTAAGTATT+GGG + tig0018481:867-886 Msa1366650:CDS 15.0%
!!! TCTTTTTCTTTGTAAAATTA+TGG - tig0018481:2612-2631 None:intergenic 15.0%
!!! ATAATTTTACAAAGAAAAAG+AGG + tig0018481:2611-2630 Msa1366650:intron 15.0%
!!! ATACTTGATAACTATAATTA+GGG - tig0018481:3272-3291 None:intergenic 15.0%
!!! TTTTTGCATTTCTTTAATAT+AGG + tig0018481:3565-3584 Msa1366650:intron 15.0%
!!! TTTTGCATTTCTTTAATATA+GGG + tig0018481:3566-3585 Msa1366650:intron 15.0%
!!! GTTTTAAAACTTAACTATTT+TGG + tig0018481:4323-4342 Msa1366650:intron 15.0%
!! CTGAATATAATTTAATACTA+TGG - tig0018481:4386-4405 None:intergenic 15.0%
!! TGTATTAACAACTTAAAATA+CGG - tig0018481:4524-4543 None:intergenic 15.0%
!!! CATAACACCTTTTTAAAATT+CGG + tig0018481:163-182 Msa1366650:CDS 20.0%
!!! GATATTTGTTTTACTAATGA+TGG + tig0018481:820-839 Msa1366650:CDS 20.0%
!! ACTAATATACTTTATAACCA+CGG - tig0018481:1163-1182 None:intergenic 20.0%
!! TAAGACTCTGTAATTATATA+TGG - tig0018481:1570-1589 None:intergenic 20.0%
!! TACACAAAATTCTATCAAAA+TGG - tig0018481:1660-1679 None:intergenic 20.0%
!!! TTTTGATAGAATTTTGTGTA+TGG + tig0018481:1660-1679 Msa1366650:intron 20.0%
!! TATTCAATTCAAGCTAATAT+AGG + tig0018481:1684-1703 Msa1366650:intron 20.0%
!! TTTAGATTGCATCAAATTAT+AGG + tig0018481:1746-1765 Msa1366650:intron 20.0%
!! TTAGATTGCATCAAATTATA+GGG + tig0018481:1747-1766 Msa1366650:intron 20.0%
!! ACAAAGCAGTTTAAAAATAT+GGG - tig0018481:2502-2521 None:intergenic 20.0%
!! AACAAAGCAGTTTAAAAATA+TGG - tig0018481:2503-2522 None:intergenic 20.0%
!!! AAACTGCTTTGTTTAATTTT+AGG + tig0018481:2510-2529 Msa1366650:intron 20.0%
!!! AACTGCTTTGTTTAATTTTA+GGG + tig0018481:2511-2530 Msa1366650:intron 20.0%
!! TCGAATACAAATAAATAAAC+TGG - tig0018481:2762-2781 None:intergenic 20.0%
!! AATGACCAAAGTTAATTATA+AGG + tig0018481:3067-3086 Msa1366650:intron 20.0%
!! ATGACCAAAGTTAATTATAA+GGG + tig0018481:3068-3087 Msa1366650:intron 20.0%
!! ATTTCCCTTATAATTAACTT+TGG - tig0018481:3075-3094 None:intergenic 20.0%
!!! CATACTTGATAACTATAATT+AGG - tig0018481:3273-3292 None:intergenic 20.0%
!! TGACATTTGGATAATATTAT+TGG + tig0018481:3663-3682 Msa1366650:intron 20.0%
!! TGGATAATATTATTGGAATT+AGG + tig0018481:3670-3689 Msa1366650:intron 20.0%
!! CTGATAAATTAAACTAAGAT+GGG - tig0018481:4172-4191 None:intergenic 20.0%
!! ACTGATAAATTAAACTAAGA+TGG - tig0018481:4173-4192 None:intergenic 20.0%
!! TTAAATTATATTCAGCAATC+AGG + tig0018481:4391-4410 Msa1366650:intron 20.0%
!! AGTACAATTATTGATATTTG+CGG - tig0018481:4898-4917 None:intergenic 20.0%
!!! CATCTGTAAATAATTTTGTT+GGG + tig0018481:5381-5400 Msa1366650:three_prime_UTR 20.0%
! ATTCTCTTCTTTCTTCTTAA+GGG - tig0018481:308-327 None:intergenic 25.0%
!!! TTGTTTTATACCAAAGAGAT+TGG + tig0018481:630-649 Msa1366650:CDS 25.0%
! GTTGTTATCAACAAAAGTAA+TGG - tig0018481:1082-1101 None:intergenic 25.0%
!!! TTACTTTTGTTGATAACAAC+AGG + tig0018481:1082-1101 Msa1366650:CDS 25.0%
! CTAATATACTTTATAACCAC+GGG - tig0018481:1162-1181 None:intergenic 25.0%
! TTGTGCTATAAATAAGAATC+TGG - tig0018481:1263-1282 None:intergenic 25.0%
!! AGATTCTTATTTATAGCACA+AGG + tig0018481:1262-1281 Msa1366650:CDS 25.0%
!! GATTCTTATTTATAGCACAA+GGG + tig0018481:1263-1282 Msa1366650:CDS 25.0%
! TTCAACTTAACAAAAAGAAG+AGG + tig0018481:1292-1311 Msa1366650:CDS 25.0%
!! GATAGTCATCATTAGTTTAT+TGG + tig0018481:1774-1793 Msa1366650:intron 25.0%
!! ATTGTTTTCCTAAAAGCTAA+AGG - tig0018481:1906-1925 None:intergenic 25.0%
! AAAAAGAGTTGTAGATAACA+GGG - tig0018481:1929-1948 None:intergenic 25.0%
! AAAAAAGAGTTGTAGATAAC+AGG - tig0018481:1930-1949 None:intergenic 25.0%
! TATTGACAATGGAGAATAAA+GGG - tig0018481:1987-2006 None:intergenic 25.0%
! ATATTGACAATGGAGAATAA+AGG - tig0018481:1988-2007 None:intergenic 25.0%
! CTCCTATCATGTATATATTA+AGG + tig0018481:2129-2148 Msa1366650:intron 25.0%
!! TTACAAAGAAAAAGAGGTAT+TGG + tig0018481:2617-2636 Msa1366650:intron 25.0%
! AGAAAAACAAAGAAAACCAA+CGG - tig0018481:2994-3013 None:intergenic 25.0%
!! AGTTAGTAGTTAAGGTATTA+GGG + tig0018481:3020-3039 Msa1366650:intron 25.0%
! TAATATAGGGACTACTATAA+AGG + tig0018481:3579-3598 Msa1366650:intron 25.0%
! CTAATGATACATTTGACATT+TGG + tig0018481:3650-3669 Msa1366650:intron 25.0%
!! GTGAATAATACATTTGCTTT+TGG + tig0018481:3695-3714 Msa1366650:intron 25.0%
! CTATCATGATTTAGAAAAAG+GGG - tig0018481:3732-3751 None:intergenic 25.0%
! GCTATCATGATTTAGAAAAA+GGG - tig0018481:3733-3752 None:intergenic 25.0%
!!! TCCTTCAAGTTTATGATTTT+AGG + tig0018481:3786-3805 Msa1366650:intron 25.0%
! ACCTAAAATCATAAACTTGA+AGG - tig0018481:3790-3809 None:intergenic 25.0%
! TGAAAATGAACAAATCCATT+GGG - tig0018481:4089-4108 None:intergenic 25.0%
! ATGAAAATGAACAAATCCAT+TGG - tig0018481:4090-4109 None:intergenic 25.0%
! GAATAGCGAAATATATCATA+TGG - tig0018481:4547-4566 None:intergenic 25.0%
! TATAAAGAATGAGAGCAAAA+GGG - tig0018481:4841-4860 None:intergenic 25.0%
! TTATAAAGAATGAGAGCAAA+AGG - tig0018481:4842-4861 None:intergenic 25.0%
! ATTTGGACCAAATATATGTA+TGG + tig0018481:4931-4950 Msa1366650:intron 25.0%
! TTTGGACCAAATATATGTAT+GGG + tig0018481:4932-4951 Msa1366650:intron 25.0%
! CTTCAAAAAAATCTCTGATA+TGG - tig0018481:5265-5284 None:intergenic 25.0%
!! GCATCTGTAAATAATTTTGT+TGG + tig0018481:5380-5399 Msa1366650:three_prime_UTR 25.0%
! TAAGCACATGCATAATAAAT+TGG - tig0018481:5433-5452 None:intergenic 25.0%
!! AGCGTAACCGAATTTTAAAA+AGG - tig0018481:173-192 None:intergenic 30.0%
CATTCTCTTCTTTCTTCTTA+AGG - tig0018481:309-328 None:intergenic 30.0%
!!! AAGGATAAGAGTACTTTTCA+TGG + tig0018481:535-554 Msa1366650:CDS 30.0%
!!! AGGATAAGAGTACTTTTCAT+GGG + tig0018481:536-555 Msa1366650:CDS 30.0%
!!! GATTAGGTTTTTTCCGAATT+CGG + tig0018481:690-709 Msa1366650:CDS 30.0%
!!! ATTAGGTTTTTTCCGAATTC+GGG + tig0018481:691-710 Msa1366650:CDS 30.0%
TGGATACTAAGGTTAAGATT+TGG + tig0018481:737-756 Msa1366650:CDS 30.0%
GGATACTAAGGTTAAGATTT+GGG + tig0018481:738-757 Msa1366650:CDS 30.0%
TAAATGTATGAGGACTTACA+TGG + tig0018481:777-796 Msa1366650:CDS 30.0%
AAATGTATGAGGACTTACAT+GGG + tig0018481:778-797 Msa1366650:CDS 30.0%
! GGATAAACAGAATGTTTTGT+TGG + tig0018481:966-985 Msa1366650:CDS 30.0%
TGATAAGAAGATTGTTCAGT+GGG + tig0018481:999-1018 Msa1366650:CDS 30.0%
!!! ACTCTTTTTTACACTTGTGT+AGG + tig0018481:1940-1959 Msa1366650:intron 30.0%
CTTTCACATCATATTGACAA+TGG - tig0018481:1998-2017 None:intergenic 30.0%
!!! TTCTGCTGAATATTTTGACT+TGG + tig0018481:2077-2096 Msa1366650:intron 30.0%
CGCCTTAATATATACATGAT+AGG - tig0018481:2134-2153 None:intergenic 30.0%
TCACATTAATCTCTACATCA+AGG + tig0018481:2204-2223 Msa1366650:intron 30.0%
!!! AGTCAATGCGTGTTTTTTTA+AGG + tig0018481:2540-2559 Msa1366650:intron 30.0%
! ACCATTTGATTGACAACTTT+TGG + tig0018481:2581-2600 Msa1366650:intron 30.0%
! CCATTTGATTGACAACTTTT+GGG + tig0018481:2582-2601 Msa1366650:intron 30.0%
ATTCGAGAACATATTTCTTC+TGG + tig0018481:2776-2795 Msa1366650:intron 30.0%
! CAGTTAGTAGTTAAGGTATT+AGG + tig0018481:3019-3038 Msa1366650:intron 30.0%
ACAAGTTAATGAGCTATAAG+AGG - tig0018481:3224-3243 None:intergenic 30.0%
TCTTGTTAATCTTAGCATAG+CGG - tig0018481:3327-3346 None:intergenic 30.0%
!!! TGTATTTTTTAGATGCCAAC+TGG + tig0018481:3444-3463 Msa1366650:intron 30.0%
!! TCTTTAGTCCCTTTTGTTTA+TGG - tig0018481:3515-3534 None:intergenic 30.0%
GGCTATCATGATTTAGAAAA+AGG - tig0018481:3734-3753 None:intergenic 30.0%
TTTCTAAATCATGATAGCCA+TGG + tig0018481:3735-3754 Msa1366650:intron 30.0%
AACTCAATAATTTGACACCA+TGG - tig0018481:3755-3774 None:intergenic 30.0%
TTGACTTAATTCACCTACAA+TGG + tig0018481:3817-3836 Msa1366650:intron 30.0%
GTATACATAAAAGCCATTGT+AGG - tig0018481:3833-3852 None:intergenic 30.0%
! AATGGCTTTTATGTATACTC+AGG + tig0018481:3835-3854 Msa1366650:intron 30.0%
CCAGAAAACATAAAAGCAAT+TGG - tig0018481:3946-3965 None:intergenic 30.0%
!! CCAATTGCTTTTATGTTTTC+TGG + tig0018481:3943-3962 Msa1366650:intron 30.0%
TGATTACATAAGCAAACCTA+TGG + tig0018481:3970-3989 Msa1366650:intron 30.0%
GAAAATGAACAAATCCATTG+GGG - tig0018481:4088-4107 None:intergenic 30.0%
! CATTTTCATCCTTTTGAATG+TGG + tig0018481:4101-4120 Msa1366650:intron 30.0%
TATTTCGCTATTCCATAAGA+TGG + tig0018481:4554-4573 Msa1366650:intron 30.0%
ATTTCGCTATTCCATAAGAT+GGG + tig0018481:4555-4574 Msa1366650:intron 30.0%
!! ATTCTATTGATTCCAGTGAA+AGG - tig0018481:4607-4626 None:intergenic 30.0%
AATCTTATCAGGATTAGGAA+AGG - tig0018481:4642-4661 None:intergenic 30.0%
TTGCTAATCTTATCAGGATT+AGG - tig0018481:4647-4666 None:intergenic 30.0%
TAATCCTGATAAGATTAGCA+AGG + tig0018481:4646-4665 Msa1366650:intron 30.0%
AGAATATCATCTTGAAACTC+AGG - tig0018481:4702-4721 None:intergenic 30.0%
! GTTTATTGTGTATACCGTTT+TGG + tig0018481:4726-4745 Msa1366650:intron 30.0%
AGTTAAAAGTCAAATGGTGT+TGG - tig0018481:4874-4893 None:intergenic 30.0%
TTGGACCAAATATATGTATG+GGG + tig0018481:4933-4952 Msa1366650:intron 30.0%
AATGTCCCCATACATATATT+TGG - tig0018481:4941-4960 None:intergenic 30.0%
TGACATCAATGTCTATATGT+TGG + tig0018481:5015-5034 Msa1366650:intron 30.0%
!! TGACATGGAATTTTTCAAAC+TGG - tig0018481:5332-5351 None:intergenic 30.0%
AATTAAACTGCAACATGACA+TGG - tig0018481:5347-5366 None:intergenic 30.0%
TGTTATGCTGTTCATCAAAG+AGG - tig0018481:150-169 None:intergenic 35.0%
TGAAGAATAAGAAGAGTCCT+TGG + tig0018481:389-408 Msa1366650:CDS 35.0%
GAAGAATAAGAAGAGTCCTT+GGG + tig0018481:390-409 Msa1366650:CDS 35.0%
AGGTTTACAAGGAGAGTTAA+CGG + tig0018481:426-445 Msa1366650:CDS 35.0%
! TTTTTCTTCGCCTTTCTTCT+TGG - tig0018481:482-501 None:intergenic 35.0%
AAGAAAGGCGAAGAAAAAAG+TGG + tig0018481:484-503 Msa1366650:CDS 35.0%
!!! GAAGAAAAAAGTGGTTTTGG+TGG + tig0018481:493-512 Msa1366650:CDS 35.0%
!!! TTTTGGTGGTGAAAAAGTTG+AGG + tig0018481:507-526 Msa1366650:CDS 35.0%
TGAAAAAGTTGAGGCTGTTA+AGG + tig0018481:516-535 Msa1366650:CDS 35.0%
! TTTTCATGGGAAAGAGGAAA+GGG + tig0018481:549-568 Msa1366650:CDS 35.0%
AAAGAGGAAAGGGATTATCA+AGG + tig0018481:559-578 Msa1366650:CDS 35.0%
AGAATCAAATGACCCGAATT+CGG - tig0018481:706-725 None:intergenic 35.0%
!! ATTTGGGATGTTTTCAACAC+TGG + tig0018481:754-773 Msa1366650:CDS 35.0%
TCAACACTGGTAAATGTATG+AGG + tig0018481:767-786 Msa1366650:CDS 35.0%
ACAAATATCCCTAACAGCTT+TGG - tig0018481:809-828 None:intergenic 35.0%
GGTTAAGCTTCACAACATAA+GGG - tig0018481:939-958 None:intergenic 35.0%
TTATGTTGTGAAGCTTAACC+CGG + tig0018481:939-958 Msa1366650:CDS 35.0%
ACATTCTGTTTATCCTCATC+CGG - tig0018481:961-980 None:intergenic 35.0%
!! AAACAGAATGTTTTGTTGGC+TGG + tig0018481:970-989 Msa1366650:CDS 35.0%
GTGATAAGAAGATTGTTCAG+TGG + tig0018481:998-1017 Msa1366650:CDS 35.0%
TTCAGTGGGATATGAATACA+GGG + tig0018481:1013-1032 Msa1366650:CDS 35.0%
! TCAAGAGTATGATCAGCATT+TGG + tig0018481:1044-1063 Msa1366650:CDS 35.0%
! CAAGAGTATGATCAGCATTT+GGG + tig0018481:1045-1064 Msa1366650:CDS 35.0%
! AAGAGTATGATCAGCATTTG+GGG + tig0018481:1046-1065 Msa1366650:CDS 35.0%
AACAAAAAGAAGAGGTTTGC+TGG + tig0018481:1300-1319 Msa1366650:CDS 35.0%
TCCTTAGACGATCTTCATAT+TGG + tig0018481:1877-1896 Msa1366650:intron 35.0%
ACAATGGAGAATAAAGGGTT+AGG - tig0018481:1982-2001 None:intergenic 35.0%
AACAAGTTATCCATGTACAG+TGG - tig0018481:2021-2040 None:intergenic 35.0%
AGTGCGACAAATAAATTCAC+AGG - tig0018481:2250-2269 None:intergenic 35.0%
TACTAACAAAGACCCCTAAA+TGG - tig0018481:2280-2299 None:intergenic 35.0%
GGTCTTTGTTAGTAGTAAGT+TGG + tig0018481:2286-2305 Msa1366650:intron 35.0%
CCCAAAAGTTGTCAATCAAA+TGG - tig0018481:2585-2604 None:intergenic 35.0%
! TTACCTTTTTCTGCATGTGA+AGG + tig0018481:2945-2964 Msa1366650:intron 35.0%
CTCTGTTCAGTTAGTAGTTA+AGG + tig0018481:3012-3031 Msa1366650:intron 35.0%
!! CTTCTTAACTTGTGCCTTAA+GGG - tig0018481:3109-3128 None:intergenic 35.0%
CCACTATTGTGAAGACTAAA+GGG - tig0018481:3300-3319 None:intergenic 35.0%
TAGTAAGACACATGCTTGTT+TGG + tig0018481:3355-3374 Msa1366650:intron 35.0%
TTGGCACATTTAATGCCATA+TGG + tig0018481:3374-3393 Msa1366650:intron 35.0%
GTAATGAATGTCAGTCCATA+TGG - tig0018481:3392-3411 None:intergenic 35.0%
TACTGATCAAGTCTTCAGAA+AGG + tig0018481:3412-3431 Msa1366650:intron 35.0%
TAATGGGGACCATAAACAAA+AGG + tig0018481:3503-3522 Msa1366650:intron 35.0%
AATGGGGACCATAAACAAAA+GGG + tig0018481:3504-3523 Msa1366650:intron 35.0%
AGGTTAATGTCTGTGCATTA+TGG - tig0018481:3903-3922 None:intergenic 35.0%
!! TGTTTCAAACTTGCTACCAT+AGG - tig0018481:3989-4008 None:intergenic 35.0%
! AAGTTTGAAACATACCCAAG+AGG + tig0018481:3997-4016 Msa1366650:intron 35.0%
GTTGAATTCAATCATCTCGT+TGG - tig0018481:4023-4042 None:intergenic 35.0%
ACAGAGTTTAATTGACACCA+TGG + tig0018481:4198-4217 Msa1366650:intron 35.0%
TTTAATTGACACCATGGCTA+TGG + tig0018481:4204-4223 Msa1366650:intron 35.0%
! TGGTTTGTGATAGAACAGTA+TGG + tig0018481:4224-4243 Msa1366650:intron 35.0%
!! TGTCACTTTATGAGTTGAGT+CGG + tig0018481:4453-4472 Msa1366650:intron 35.0%
AATATGTCGATCCCATCTTA+TGG - tig0018481:4569-4588 None:intergenic 35.0%
ATCTTGAAACTCAGGATGAA+TGG - tig0018481:4694-4713 None:intergenic 35.0%
AAATGCAACAACTGCCAAAA+CGG - tig0018481:4743-4762 None:intergenic 35.0%
TGCGGTAGTTAAAAGTCAAA+TGG - tig0018481:4880-4899 None:intergenic 35.0%
TACTCAGACGAAATGTGATT+TGG + tig0018481:4914-4933 Msa1366650:intron 35.0%
! ACACTCTTAGTTCAAGTTTC+TGG + tig0018481:4978-4997 Msa1366650:intron 35.0%
! AGTGGATTCACTTGTTGATT+TGG + tig0018481:5138-5157 Msa1366650:three_prime_UTR 35.0%
CTCAATTAGCATGTAATGCT+TGG - tig0018481:5234-5253 None:intergenic 35.0%
CTAAACCGTCTTTAGCGTAA+GGG - tig0018481:69-88 None:intergenic 40.0%
TTTGTGGTTACGCATACCTT+GGG - tig0018481:92-111 None:intergenic 40.0%
TGCTGTTCATCAAAGAGGAA+AGG - tig0018481:145-164 None:intergenic 40.0%
CCTTCTGCGTCAAATTACAT+CGG + tig0018481:199-218 Msa1366650:CDS 40.0%
! TTTTCCTCTTCTTCTGTTCG+CGG - tig0018481:279-298 None:intergenic 40.0%
AGATCAGAAGAAATACGCTG+AGG + tig0018481:450-469 Msa1366650:CDS 40.0%
! GGCGAAGAAAAAAGTGGTTT+TGG + tig0018481:490-509 Msa1366650:CDS 40.0%
! GAGTACTTTTCATGGGAAAG+AGG + tig0018481:543-562 Msa1366650:CDS 40.0%
! CTTTTCATGGGAAAGAGGAA+AGG + tig0018481:548-567 Msa1366650:CDS 40.0%
AGGAAAGGGATTATCAAGGT+AGG + tig0018481:563-582 Msa1366650:CDS 40.0%
TTACTCGCCTTAGCATCTTT+CGG - tig0018481:604-623 None:intergenic 40.0%
CAAGTATGCACCAATCTCTT+TGG - tig0018481:643-662 None:intergenic 40.0%
CAAAGAGATTGGTGCATACT+TGG + tig0018481:641-660 Msa1366650:CDS 40.0%
TTCGGGTCATTTGATTCTCT+CGG + tig0018481:708-727 Msa1366650:CDS 40.0%
!!! GGAACAAAGTTTTTGAGTGC+TGG + tig0018481:841-860 Msa1366650:CDS 40.0%
!! AAGTATTGGGATACCGAAAC+AGG + tig0018481:880-899 Msa1366650:CDS 40.0%
! AGTATTGGGATACCGAAACA+GGG + tig0018481:881-900 Msa1366650:CDS 40.0%
TTATATCGACGTTCTCCACT+GGG + tig0018481:908-927 Msa1366650:CDS 40.0%
GGGTTAAGCTTCACAACATA+AGG - tig0018481:940-959 None:intergenic 40.0%
CATTCTGTTTATCCTCATCC+GGG - tig0018481:960-979 None:intergenic 40.0%
GTTCAGTGGGATATGAATAC+AGG + tig0018481:1012-1031 Msa1366650:CDS 40.0%
AGAGTATGATCAGCATTTGG+GGG + tig0018481:1047-1066 Msa1366650:CDS 40.0%
! TTGTCAGGTCAATTTTTCGC+CGG + tig0018481:1344-1363 Msa1366650:CDS 40.0%
TGAAGATCGTCTAAGGACTT+AGG - tig0018481:1874-1893 None:intergenic 40.0%
GCCAATATGAAGATCGTCTA+AGG - tig0018481:1881-1900 None:intergenic 40.0%
!!! ATTGGCAGCCTTTAGCTTTT+AGG + tig0018481:1895-1914 Msa1366650:intron 40.0%
TTGGAATGAGAAGAGTTGCA+TGG + tig0018481:2096-2115 Msa1366650:intron 40.0%
! TCCATTTTCATCCACAACCT+TGG + tig0018481:2172-2191 Msa1366650:intron 40.0%
! TAATGTGAAAGTGTGTGCCA+AGG - tig0018481:2192-2211 None:intergenic 40.0%
! CACAGGTGGACATATTTTTC+AGG - tig0018481:2233-2252 None:intergenic 40.0%
GCGACAAATAAATTCACAGG+TGG - tig0018481:2247-2266 None:intergenic 40.0%
AACATAGGTTGCAGGAACAA+GGG - tig0018481:2378-2397 None:intergenic 40.0%
ACTTTCTCTCTCTACTGCTT+TGG - tig0018481:2651-2670 None:intergenic 40.0%
AGTCTCACAAGTCACAACTA+AGG - tig0018481:2819-2838 None:intergenic 40.0%
GGGAAACAAAGCTTAGTACA+GGG - tig0018481:2849-2868 None:intergenic 40.0%
AGGGAAACAAAGCTTAGTAC+AGG - tig0018481:2850-2869 None:intergenic 40.0%
! GTTCTTCTCTGTGTTGTTGT+TGG + tig0018481:2917-2936 Msa1366650:intron 40.0%
TCTCCTTCACATGCAGAAAA+AGG - tig0018481:2951-2970 None:intergenic 40.0%
TATGTTCTACTCTGTTCCGT+TGG + tig0018481:2975-2994 Msa1366650:intron 40.0%
! AATGCTAACTTGTGCCCTTA+AGG + tig0018481:3092-3111 Msa1366650:intron 40.0%
!! GCTTCTTAACTTGTGCCTTA+AGG - tig0018481:3110-3129 None:intergenic 40.0%
!! CTCATTAACTTGTGCCCTAA+GGG + tig0018481:3231-3250 Msa1366650:intron 40.0%
! CCCTTTAGTCTTCACAATAG+TGG + tig0018481:3297-3316 Msa1366650:intron 40.0%
GCCACTATTGTGAAGACTAA+AGG - tig0018481:3301-3320 None:intergenic 40.0%
CAAGTCTTCAGAAAGGAACT+TGG + tig0018481:3419-3438 Msa1366650:intron 40.0%
GGCATTTACCATGGCATATT+AGG + tig0018481:3465-3484 Msa1366650:intron 40.0%
TTGTTTATGGTCCCCATTAG+TGG - tig0018481:3502-3521 None:intergenic 40.0%
AAAGAGACCCATAGAATCAC+AGG + tig0018481:3530-3549 Msa1366650:intron 40.0%
TACTATAAAGGTCACTGCCA+AGG + tig0018481:3591-3610 Msa1366650:intron 40.0%
! ACCACTTTCATCTGAAACCT+TGG - tig0018481:3611-3630 None:intergenic 40.0%
AGTTGAGTGCTACAACTAAG+AGG - tig0018481:3923-3942 None:intergenic 40.0%
ATTAGACCAGGCTAAACATG+AGG - tig0018481:4136-4155 None:intergenic 40.0%
ATGTTTAGCCTGGTCTAATC+TGG + tig0018481:4137-4156 Msa1366650:intron 40.0%
TCTATCACAAACCATAGCCA+TGG - tig0018481:4218-4237 None:intergenic 40.0%
CCAGTGAAAGGAATCATATC+AGG - tig0018481:4595-4614 None:intergenic 40.0%
CCTGATATGATTCCTTTCAC+TGG + tig0018481:4592-4611 Msa1366650:intron 40.0%
AGCACCTTGCTAATCTTATC+AGG - tig0018481:4653-4672 None:intergenic 40.0%
ATGTCTATATGTTGGATCGC+AGG + tig0018481:5023-5042 Msa1366650:intron 40.0%
TGTCTATATGTTGGATCGCA+GGG + tig0018481:5024-5043 Msa1366650:intron 40.0%
!! CTTGTTGATTTGGTCTTCCT+TGG + tig0018481:5148-5167 Msa1366650:three_prime_UTR 40.0%
TTGGTCATAGGTAGGGTTGA+AGG - tig0018481:17-36 None:intergenic 45.0%
ACCCTACCTATGACCAACTA+TGG + tig0018481:20-39 Msa1366650:five_prime_UTR 45.0%
CCCATAGTTGGTCATAGGTA+GGG - tig0018481:24-43 None:intergenic 45.0%
CCCTACCTATGACCAACTAT+GGG + tig0018481:21-40 Msa1366650:five_prime_UTR 45.0%
TCTTTAGCGTAAGGGTGAGA+CGG - tig0018481:61-80 None:intergenic 45.0%
TCTCACCCTTACGCTAAAGA+CGG + tig0018481:61-80 Msa1366650:five_prime_UTR 45.0%
GCTAAACCGTCTTTAGCGTA+AGG - tig0018481:70-89 None:intergenic 45.0%
GTTTGTGGTTACGCATACCT+TGG - tig0018481:93-112 None:intergenic 45.0%
GGTATGCGTAACCACAAACT+TGG + tig0018481:94-113 Msa1366650:exon 45.0%
CTTCGACGAAACCAAGTTTG+TGG - tig0018481:108-127 None:intergenic 45.0%
CCGATGTAATTTGACGCAGA+AGG - tig0018481:202-221 None:intergenic 45.0%
AGCAGCGTTATTCTTCAGCA+AGG - tig0018481:236-255 None:intergenic 45.0%
! TGATGATGAAGACGACGAAG+AGG + tig0018481:327-346 Msa1366650:CDS 45.0%
GATGATGAAGACGACGAAGA+GGG + tig0018481:328-347 Msa1366650:CDS 45.0%
GATTGAGAATCCAGCTTCTG+AGG + tig0018481:357-376 Msa1366650:CDS 45.0%
AATAAGAAGAGTCCTTGGGC+TGG + tig0018481:394-413 Msa1366650:CDS 45.0%
ATAAGAAGAGTCCTTGGGCT+GGG + tig0018481:395-414 Msa1366650:CDS 45.0%
GGGAAGAAGGAAGGTTTACA+AGG + tig0018481:415-434 Msa1366650:CDS 45.0%
GGGATTATCAAGGTAGGTCT+TGG + tig0018481:569-588 Msa1366650:CDS 45.0%
AGATTGGTGCATACTTGGAG+CGG + tig0018481:646-665 Msa1366650:CDS 45.0%
ACTTGGAGCGGACATACAAA+AGG + tig0018481:658-677 Msa1366650:CDS 45.0%
CTTGGAGCGGACATACAAAA+GGG + tig0018481:659-678 Msa1366650:CDS 45.0%
TTGGAGCGGACATACAAAAG+GGG + tig0018481:660-679 Msa1366650:CDS 45.0%
CAAAAGGGGTTTCTGCGATT+AGG + tig0018481:674-693 Msa1366650:CDS 45.0%
TTTGATTCTCTCGGCTGGTA+TGG + tig0018481:717-736 Msa1366650:CDS 45.0%
TGGGTCATTCCAAAGCTGTT+AGG + tig0018481:797-816 Msa1366650:CDS 45.0%
GGGTCATTCCAAAGCTGTTA+GGG + tig0018481:798-817 Msa1366650:CDS 45.0%
CGATATAACCTGCCCTGTTT+CGG - tig0018481:896-915 None:intergenic 45.0%
GTTATATCGACGTTCTCCAC+TGG + tig0018481:907-926 Msa1366650:CDS 45.0%
AACATAAGGGATCTTCCCAG+TGG - tig0018481:926-945 None:intergenic 45.0%
TAGTGATGACAAGTCCCTCA+GGG + tig0018481:1119-1138 Msa1366650:CDS 45.0%
! GAAGGCATAGAGTGCATATG+TGG - tig0018481:1189-1208 None:intergenic 45.0%
TTTGCTGGACACATTGTTGC+TGG + tig0018481:1315-1334 Msa1366650:CDS 45.0%
TGTTGCTGGATATGCTTGTC+AGG + tig0018481:1329-1348 Msa1366650:CDS 45.0%
GACATGACAAAACGTCCATC+CGG - tig0018481:1366-1385 None:intergenic 45.0%
! GGATGGACGTTTTGTCATGT+CGG + tig0018481:1365-1384 Msa1366650:CDS 45.0%
! GATGGACGTTTTGTCATGTC+GGG + tig0018481:1366-1385 Msa1366650:CDS 45.0%
!! TGAGGGTAAGTGTTGGTTCT+GGG + tig0018481:1395-1414 Msa1366650:CDS 45.0%
!! GTAAGTGTTGGTTCTGGGAT+TGG + tig0018481:1400-1419 Msa1366650:CDS 45.0%
AGAACTCTCAAGTGTCACGA+AGG + tig0018481:1441-1460 Msa1366650:CDS 45.0%
GCAATGAGTAACTGACAGTG+AGG - tig0018481:1619-1638 None:intergenic 45.0%
TATTGGTCCAACAGTCTAGC+AGG + tig0018481:1791-1810 Msa1366650:intron 45.0%
GATGTGAAAGCCACTGTACA+TGG + tig0018481:2008-2027 Msa1366650:intron 45.0%
GCCAAGGTTGTGGATGAAAA+TGG - tig0018481:2176-2195 None:intergenic 45.0%
! TCGCACTAGTCATGCCATTT+AGG + tig0018481:2263-2282 Msa1366650:intron 45.0%
! CGCACTAGTCATGCCATTTA+GGG + tig0018481:2264-2283 Msa1366650:intron 45.0%
! GCACTAGTCATGCCATTTAG+GGG + tig0018481:2265-2284 Msa1366650:intron 45.0%
ACATAGGTTGCAGGAACAAG+GGG - tig0018481:2377-2396 None:intergenic 45.0%
GAACATAGGTTGCAGGAACA+AGG - tig0018481:2379-2398 None:intergenic 45.0%
CAACCTATGTTCAGCAGGAA+CGG + tig0018481:2387-2406 Msa1366650:intron 45.0%
CTTCGTACTTTGTGCAGAAG+GGG - tig0018481:2895-2914 None:intergenic 45.0%
GCTTCGTACTTTGTGCAGAA+GGG - tig0018481:2896-2915 None:intergenic 45.0%
AGCTTCGTACTTTGTGCAGA+AGG - tig0018481:2897-2916 None:intergenic 45.0%
!! GCTCATTAACTTGTGCCCTA+AGG + tig0018481:3230-3249 Msa1366650:intron 45.0%
! CATGCTAACTTGTGCCCTTA+GGG - tig0018481:3248-3267 None:intergenic 45.0%
! TCATGCTAACTTGTGCCCTT+AGG - tig0018481:3249-3268 None:intergenic 45.0%
ATGCCAACTGGCATTTACCA+TGG + tig0018481:3456-3475 Msa1366650:intron 45.0%
ATGCCATGGTAAATGCCAGT+TGG - tig0018481:3462-3481 None:intergenic 45.0%
! GCACCGATGTTACCACTAAT+GGG + tig0018481:3487-3506 Msa1366650:intron 45.0%
CACCGATGTTACCACTAATG+GGG + tig0018481:3488-3507 Msa1366650:intron 45.0%
GTCCCCATTAGTGGTAACAT+CGG - tig0018481:3493-3512 None:intergenic 45.0%
ACCCATAGAATCACAGGTCA+AGG + tig0018481:3536-3555 Msa1366650:intron 45.0%
CCCTTGACCTGTGATTCTAT+GGG - tig0018481:3540-3559 None:intergenic 45.0%
CCCATAGAATCACAGGTCAA+GGG + tig0018481:3537-3556 Msa1366650:intron 45.0%
ACCCTTGACCTGTGATTCTA+TGG - tig0018481:3541-3560 None:intergenic 45.0%
GCCAAGGTTTCAGATGAAAG+TGG + tig0018481:3607-3626 Msa1366650:intron 45.0%
! AATCATCTCGTTGGCCTCTT+GGG - tig0018481:4014-4033 None:intergenic 45.0%
TGAAAGGCTTCAGCTCAACA+TGG - tig0018481:4045-4064 None:intergenic 45.0%
GAACAAATCCATTGGGGATC+TGG - tig0018481:4082-4101 None:intergenic 45.0%
CTAATCCCACTAAGTGTGGT+CGG - tig0018481:4268-4287 None:intergenic 45.0%
AAGCCTAATCCCACTAAGTG+TGG - tig0018481:4272-4291 None:intergenic 45.0%
CACTTAGTGGGATTAGGCTT+TGG + tig0018481:4272-4291 Msa1366650:intron 45.0%
GAAACTCAGGATGAATGGCA+TGG - tig0018481:4689-4708 None:intergenic 45.0%
TGTTCAATGATGCCTGTTGC+TGG + tig0018481:5055-5074 Msa1366650:exon 45.0%
! TGCTACTTAGTTCCAGCAAC+AGG - tig0018481:5070-5089 None:intergenic 45.0%
CTGGAACTAAGTAGCAGAAG+CGG + tig0018481:5074-5093 Msa1366650:three_prime_UTR 45.0%
TGGAACTAAGTAGCAGAAGC+GGG + tig0018481:5075-5094 Msa1366650:three_prime_UTR 45.0%
CCACTATGTTGCTACTCCTT+TGG - tig0018481:5123-5142 None:intergenic 45.0%
CCAAAGGAGTAGCAACATAG+TGG + tig0018481:5120-5139 Msa1366650:three_prime_UTR 45.0%
! TTTGGTCTTCCTTGGCTCAA+CGG + tig0018481:5156-5175 Msa1366650:three_prime_UTR 45.0%
CAATTAATGCCGTTGAGCCA+AGG - tig0018481:5168-5187 None:intergenic 45.0%
GCCCATAGTTGGTCATAGGT+AGG - tig0018481:25-44 None:intergenic 50.0%
CTTTAGCGTAAGGGTGAGAC+GGG - tig0018481:60-79 None:intergenic 50.0%
GCTAAAGACGGTTTAGCCCA+AGG + tig0018481:73-92 Msa1366650:five_prime_UTR 50.0%
TCTTCTTCTGTTCGCGGTGT+GGG - tig0018481:273-292 None:intergenic 50.0%
AATAACCACGCCTCAGAAGC+TGG - tig0018481:370-389 None:intergenic 50.0%
GGTCATTTGATTCTCTCGGC+TGG + tig0018481:712-731 Msa1366650:CDS 50.0%
CTCGGCTGGTATGGATACTA+AGG + tig0018481:726-745 Msa1366650:CDS 50.0%
TGTGAAGCTTAACCCGGATG+AGG + tig0018481:945-964 Msa1366650:CDS 50.0%
CTAGTGATGACAAGTCCCTC+AGG + tig0018481:1118-1137 Msa1366650:CDS 50.0%
ATGACAAGTCCCTCAGGGTA+TGG + tig0018481:1124-1143 Msa1366650:CDS 50.0%
TGACAAGTCCCTCAGGGTAT+GGG + tig0018481:1125-1144 Msa1366650:CDS 50.0%
ACCATACTCCCATACCCTGA+GGG - tig0018481:1136-1155 None:intergenic 50.0%
TACCATACTCCCATACCCTG+AGG - tig0018481:1137-1156 None:intergenic 50.0%
! ATGGGAGTATGGTATTCCCG+TGG + tig0018481:1143-1162 Msa1366650:CDS 50.0%
TTGGGGTGAAGCGAAATGGA+AGG - tig0018481:1207-1226 None:intergenic 50.0%
! CAGGTCAATTTTTCGCCGGA+TGG + tig0018481:1348-1367 Msa1366650:CDS 50.0%
! CGTTTTGTCATGTCGGGAGA+TGG + tig0018481:1372-1391 Msa1366650:CDS 50.0%
GAGATGGTGAGGGTAAGTGT+TGG + tig0018481:1388-1407 Msa1366650:CDS 50.0%
!! GTGAGGGTAAGTGTTGGTTC+TGG + tig0018481:1394-1413 Msa1366650:CDS 50.0%
!! TGTCACGAAGGCGTTACCAT+CGG + tig0018481:1453-1472 Msa1366650:CDS 50.0%
! GCTACTTTGCTCTGTTCCAG+AGG - tig0018481:1492-1511 None:intergenic 50.0%
!! GGGACGGGTTGATAAAGTAC+TGG + tig0018481:1523-1542 Msa1366650:CDS 50.0%
CATGTCTCCTGCTAGACTGT+TGG - tig0018481:1801-1820 None:intergenic 50.0%
GTCTAGCAGGAGACATGTGA+AGG + tig0018481:1804-1823 Msa1366650:intron 50.0%
! GAAAGTGTGTGCCAAGGTTG+TGG - tig0018481:2186-2205 None:intergenic 50.0%
GTTGGCTATGTTGCCAGTAG+CGG + tig0018481:2304-2323 Msa1366650:intron 50.0%
GTGCAATCGTGCGTGATAAC+AGG + tig0018481:2326-2345 Msa1366650:intron 50.0%
CGTGCGTGATAACAGGATAG+TGG + tig0018481:2333-2352 Msa1366650:intron 50.0%
TCCTGCAACCTATGTTCAGC+AGG + tig0018481:2382-2401 Msa1366650:intron 50.0%
TCCTGCTGAACATAGGTTGC+AGG - tig0018481:2386-2405 None:intergenic 50.0%
ATGCCGTTCCTGCTGAACAT+AGG - tig0018481:2393-2412 None:intergenic 50.0%
TTCAGCAGGAACGGCATTTG+CGG + tig0018481:2396-2415 Msa1366650:intron 50.0%
TGCGATTTCATCGCGATTCG+CGG - tig0018481:2422-2441 None:intergenic 50.0%
TCTTTCTCGTCTGCCGTCTA+GGG + tig0018481:2452-2471 Msa1366650:intron 50.0%
TTTCACCCTCGAACCCTAGA+CGG - tig0018481:2468-2487 None:intergenic 50.0%
! CAGCTTTGTAGCTTTGCGCA+GGG - tig0018481:2869-2888 None:intergenic 50.0%
! ACAGCTTTGTAGCTTTGCGC+AGG - tig0018481:2870-2889 None:intergenic 50.0%
! CATCGGTGCCTAATATGCCA+TGG - tig0018481:3476-3495 None:intergenic 50.0%
!! GGCACCGATGTTACCACTAA+TGG + tig0018481:3486-3505 Msa1366650:intron 50.0%
! CAATCATCTCGTTGGCCTCT+TGG - tig0018481:4015-4034 None:intergenic 50.0%
GGATTCAGCTTGGGAGTGAA+AGG - tig0018481:4061-4080 None:intergenic 50.0%
TGGGGATCTGGATTCAGCTT+GGG - tig0018481:4070-4089 None:intergenic 50.0%
TTGGGGATCTGGATTCAGCT+TGG - tig0018481:4071-4090 None:intergenic 50.0%
AGCTGAATCCAGATCCCCAA+TGG + tig0018481:4071-4090 Msa1366650:intron 50.0%
AGCTGGCTGCCACATTCAAA+AGG - tig0018481:4113-4132 None:intergenic 50.0%
ACTAAGTGTGGTCGGCTACA+TGG - tig0018481:4260-4279 None:intergenic 50.0%
ATGTAGCCGACCACACTTAG+TGG + tig0018481:4259-4278 Msa1366650:intron 50.0%
TGTAGCCGACCACACTTAGT+GGG + tig0018481:4260-4279 Msa1366650:intron 50.0%
CGACCACACTTAGTGGGATT+AGG + tig0018481:4266-4285 Msa1366650:intron 50.0%
AGGTAGGGTTGAAGGCGACA+AGG - tig0018481:9-28 None:intergenic 55.0%
GGGAGCCCATAGTTGGTCAT+AGG - tig0018481:29-48 None:intergenic 55.0%
CTTGGATGGGAGCCCATAGT+TGG - tig0018481:36-55 None:intergenic 55.0%
CAACTATGGGCTCCCATCCA+AGG + tig0018481:34-53 Msa1366650:five_prime_UTR 55.0%
CTCTTCTTCTGTTCGCGGTG+TGG - tig0018481:274-293 None:intergenic 55.0%
CACACCGCGAACAGAAGAAG+AGG + tig0018481:272-291 Msa1366650:CDS 55.0%
!! AGAATCCAGCTTCTGAGGCG+TGG + tig0018481:362-381 Msa1366650:CDS 55.0%
! GAGGAGCACGCCAAGAAGAA+AGG + tig0018481:469-488 Msa1366650:CDS 55.0%
CTCGCCTTAGCATCTTTCGG+AGG - tig0018481:601-620 None:intergenic 55.0%
TTGGGATACCGAAACAGGGC+AGG + tig0018481:885-904 Msa1366650:CDS 55.0%
TCCCTCAGGGTATGGGAGTA+TGG + tig0018481:1132-1151 Msa1366650:CDS 55.0%
CTGGTTATCCAAGCTCTGCG+CGG - tig0018481:1244-1263 None:intergenic 55.0%
TGTCATGTCGGGAGATGGTG+AGG + tig0018481:1377-1396 Msa1366650:CDS 55.0%
GTCATGTCGGGAGATGGTGA+GGG + tig0018481:1378-1397 Msa1366650:CDS 55.0%
TCTGTTCCAGAGGATGCCAC+TGG - tig0018481:1482-1501 None:intergenic 55.0%
CAGAGCAAAGTAGCGACGTG+TGG + tig0018481:1498-1517 Msa1366650:CDS 55.0%
CAAAGTAGCGACGTGTGGCT+GGG + tig0018481:1503-1522 Msa1366650:CDS 55.0%
CTCTTTCTCGTCTGCCGTCT+AGG + tig0018481:2451-2470 Msa1366650:intron 55.0%
CCAGGCTAAACATGAGGAGC+TGG - tig0018481:4130-4149 None:intergenic 55.0%
CCAGCTCCTCATGTTTAGCC+TGG + tig0018481:4127-4146 Msa1366650:intron 55.0%
CCACAGCTCCAGATTAGACC+AGG - tig0018481:4148-4167 None:intergenic 55.0%
! CCTGGTCTAATCTGGAGCTG+TGG + tig0018481:4145-4164 Msa1366650:intron 55.0%
CGGGTAGACAGAACACCACA+TGG + tig0018481:5094-5113 Msa1366650:three_prime_UTR 55.0%
GAACACCACATGGCGACCAA+AGG + tig0018481:5104-5123 Msa1366650:three_prime_UTR 55.0%
CTACTCCTTTGGTCGCCATG+TGG - tig0018481:5112-5131 None:intergenic 55.0%
! GAGTCCTTGGGCTGGGAAGA+AGG + tig0018481:402-421 Msa1366650:CDS 60.0%
CCTTCCTTCTTCCCAGCCCA+AGG - tig0018481:409-428 None:intergenic 60.0%
! CCTTGGGCTGGGAAGAAGGA+AGG + tig0018481:406-425 Msa1366650:CDS 60.0%
CGCGCCTCCGAAAGATGCTA+AGG + tig0018481:594-613 Msa1366650:CDS 60.0%
CGCGTTGGGGTGAAGCGAAA+TGG - tig0018481:1211-1230 None:intergenic 60.0%
CGCTTCACCCCAACGCGAAT+TGG + tig0018481:1214-1233 Msa1366650:CDS 60.0%
! GCGTTACCATCGGTTGCCAG+TGG + tig0018481:1463-1482 Msa1366650:CDS 60.0%
AGGATGCCACTGGCAACCGA+TGG - tig0018481:1472-1491 None:intergenic 60.0%
GCAAAGTAGCGACGTGTGGC+TGG + tig0018481:1502-1521 Msa1366650:CDS 60.0%
ACGCACGATTGCACCGCTAC+TGG - tig0018481:2320-2339 None:intergenic 60.0%
! GTCTGCCGTCTAGGGTTCGA+GGG + tig0018481:2460-2479 Msa1366650:intron 60.0%
GGGTGAGACGGGCCTTGGAT+GGG - tig0018481:49-68 None:intergenic 65.0%
AGGGTGAGACGGGCCTTGGA+TGG - tig0018481:50-69 None:intergenic 65.0%
CGTAAGGGTGAGACGGGCCT+TGG - tig0018481:54-73 None:intergenic 65.0%
CGGCGAGCCAATTCGCGTTG+GGG - tig0018481:1224-1243 None:intergenic 65.0%
GCGGCGAGCCAATTCGCGTT+GGG - tig0018481:1225-1244 None:intergenic 65.0%
CGGTTGCCAGTGGCATCCTC+TGG + tig0018481:1473-1492 Msa1366650:CDS 65.0%
GTAGCGACGTGTGGCTGGGA+CGG + tig0018481:1507-1526 Msa1366650:CDS 65.0%
TAGCGACGTGTGGCTGGGAC+GGG + tig0018481:1508-1527 Msa1366650:CDS 65.0%
! CGTCTGCCGTCTAGGGTTCG+AGG + tig0018481:2459-2478 Msa1366650:intron 65.0%
CGCGGCGAGCCAATTCGCGT+TGG - tig0018481:1226-1245 None:intergenic 70.0%
! TTGGCTCGCCGCGCAGAGCT+TGG + tig0018481:1233-1252 Msa1366650:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0018481 gene 1 5465 1 ID=Msa1366650;Name=Msa1366650
tig0018481 mRNA 1 5465 1 ID=Msa1366650-mRNA-1;Parent=Msa1366650;Name=Msa1366650-mRNA-1;_AED=0.00;_eAED=0.01;_QI=96|0|0.5|1|0|0.5|2|401|489
tig0018481 exon 1 1546 1 ID=Msa1366650-mRNA-1:exon:15201;Parent=Msa1366650-mRNA-1
tig0018481 exon 5045 5465 5045 ID=Msa1366650-mRNA-1:exon:15202;Parent=Msa1366650-mRNA-1
tig0018481 five_prime_UTR 1 96 1 ID=Msa1366650-mRNA-1:five_prime_utr;Parent=Msa1366650-mRNA-1
tig0018481 CDS 97 1546 97 ID=Msa1366650-mRNA-1:cds;Parent=Msa1366650-mRNA-1
tig0018481 CDS 5045 5064 5045 ID=Msa1366650-mRNA-1:cds;Parent=Msa1366650-mRNA-1
tig0018481 three_prime_UTR 5065 5465 5065 ID=Msa1366650-mRNA-1:three_prime_utr;Parent=Msa1366650-mRNA-1
Gene Sequence

>Msa1366650

ATGCGTAACCACAAACTTGGTTTCGTCGAAGATGCTAACATTGAACCTTTCCTCTTTGATGAACAGCATAACACCTTTTTAAAATTCGGTTACGCTGCTGATCCTTCTGCGTCAAATTACATCGGTGATTTCGATGCCTTGCTGAAGAATAACGCTGCTTCTGTTTACAATATCCCACACCGCGAACAGAAGAAGAGGAAAATTGAATCCCTTAAGAAGAAAGAAGAGAATGATGATGAAGACGACGAAGAGGGTGTTGAGATTGAGAATCCAGCTTCTGAGGCGTGGTTATTGAAGAATAAGAAGAGTCCTTGGGCTGGGAAGAAGGAAGGTTTACAAGGAGAGTTAACGGAAGATCAGAAGAAATACGCTGAGGAGCACGCCAAGAAGAAAGGCGAAGAAAAAAGTGGTTTTGGTGGTGAAAAAGTTGAGGCTGTTAAGGATAAGAGTACTTTTCATGGGAAAGAGGAAAGGGATTATCAAGGTAGGTCTTGGATCGCGCCTCCGAAAGATGCTAAGGCGAGTAATGATCATTGTTTTATACCAAAGAGATTGGTGCATACTTGGAGCGGACATACAAAAGGGGTTTCTGCGATTAGGTTTTTTCCGAATTCGGGTCATTTGATTCTCTCGGCTGGTATGGATACTAAGGTTAAGATTTGGGATGTTTTCAACACTGGTAAATGTATGAGGACTTACATGGGTCATTCCAAAGCTGTTAGGGATATTTGTTTTACTAATGATGGAACAAAGTTTTTGAGTGCTGGTTATGATAAGAATATTAAGTATTGGGATACCGAAACAGGGCAGGTTATATCGACGTTCTCCACTGGGAAGATCCCTTATGTTGTGAAGCTTAACCCGGATGAGGATAAACAGAATGTTTTGTTGGCTGGTATGAGTGATAAGAAGATTGTTCAGTGGGATATGAATACAGGGCAGATAACTCAAGAGTATGATCAGCATTTGGGGGCTGTCAATACCATTACTTTTGTTGATAACAACAGGAGATTTGTTACTTCTAGTGATGACAAGTCCCTCAGGGTATGGGAGTATGGTATTCCCGTGGTTATAAAGTATATTAGTGAGCCACATATGCACTCTATGCCTTCCATTTCGCTTCACCCCAACGCGAATTGGCTCGCCGCGCAGAGCTTGGATAACCAGATTCTTATTTATAGCACAAGGGAGAAGTTTCAACTTAACAAAAAGAAGAGGTTTGCTGGACACATTGTTGCTGGATATGCTTGTCAGGTCAATTTTTCGCCGGATGGACGTTTTGTCATGTCGGGAGATGGTGAGGGTAAGTGTTGGTTCTGGGATTGGAAGAGTTGCAAAGTCTTTAGAACTCTCAAGTGTCACGAAGGCGTTACCATCGGTTGCCAGTGGCATCCTCTGGAACAGAGCAAAGTAGCGACGTGTGGCTGGGACGGGTTGATAAAGTACTGGTGGACTAGTTCTGTTCAATGA
Protein sequence

>Msa1366650

MRNHKLGFVEDANIEPFLFDEQHNTFLKFGYAADPSASNYIGDFDALLKNNAASVYNIPHREQKKRKIESLKKKEENDDEDDEEGVEIENPASEAWLLKNKKSPWAGKKEGLQGELTEDQKKYAEEHAKKKGEEKSGFGGEKVEAVKDKSTFHGKEERDYQGRSWIAPPKDAKASNDHCFIPKRLVHTWSGHTKGVSAIRFFPNSGHLILSAGMDTKVKIWDVFNTGKCMRTYMGHSKAVRDICFTNDGTKFLSAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDEDKQNVLLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEYGIPVVIKYISEPHMHSMPSISLHPNANWLAAQSLDNQILIYSTREKFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVTIGCQWHPLEQSKVATCGWDGLIKYWWTSSVQ*