AlfalfaGEDB | Msa1002600

M. sativa cultivar zhongmu-4 / Msa1002600

KEGG: K03124
GO: GO:0000182 GO:0000976 GO:0000977 GO:0000979 GO:0000988 GO:0000990 GO:0000991 GO:0000993 GO:0001012 GO:0001046 GO:0001047 GO:0001067 GO:0001098 GO:0001099 GO:0001139 GO:0001173 GO:0001174 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009059 GO:0009526 GO:0009527 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019867 GO:0019899 GO:0022607 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031334 GO:0031967 GO:0031968 GO:0031975 GO:0032774 GO:0032991 GO:0032993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0042170 GO:0043167 GO:0043169 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043565 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0060260 GO:0060261 GO:0065003 GO:0065004 GO:0065007 GO:0070063 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0098588 GO:0098805 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990114 GO:1990837 GO:2000112 GO:2000142 GO:2000144 GO:2001141
PFAM: PF00382.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002600	XP_003611972.1	91.571	522	9	1	1	522	1	487	0.0	902

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002600	sp\|O23215\|PBRP1_ARATH	79.032	372	36	4	1	369	1	333	0.0	568

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002600	G7KC98	91.571	522	9	1	1	522	1	487	0.0	902

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004060	Msa1002600	-0.803874	2.831006e-49	-8.615850e-47
Msa0006880	Msa1002600	-0.840340	9.226162e-58	-8.615850e-47
Msa0027580	Msa1002600	-0.802716	4.915999e-49	-8.615850e-47
Msa0029260	Msa1002600	-0.811012	8.660029e-51	-8.615850e-47
Msa0036370	Msa1002600	-0.815289	9.975925e-52	-8.615850e-47
Msa0049390	Msa1002600	-0.804119	2.517041e-49	-8.615850e-47
Msa0052350	Msa1002600	0.826099	3.266270e-54	-8.615850e-47
Msa0055100	Msa1002600	-0.804387	2.213210e-49	-8.615850e-47
Msa0055150	Msa1002600	-0.809906	1.500697e-50	-8.615850e-47
Msa0072170	Msa1002600	-0.814532	1.468319e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002600	MtrunA17_Chr5g0403861	91.571	522	9	1	1	522	1	487	0.0	902

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1002600	AT4G36650.1	79.032	372	36	4	1	369	1	333	0.0	568
Msa1002600	AT4G36650.2	67.317	410	79	7	1	398	1	367	8.14e-177	502

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Find 150 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGAGGGAAGATTGA+AGG	0.535379	6_4:-88310599	None:intergenic
AAAGCGGTTATGAAGCCCGT+GGG	0.662090	6_4:-88310543	None:intergenic
AACAAACCTAATGAGGCCGA+AGG	0.665876	6_4:+88313477	Msa1002600:CDS
AACAGCTGGGGTGTAATTAG+AGG	0.420498	6_4:-88313334	None:intergenic
AACTAAGGTTGATGCTATAG+AGG	0.490167	6_4:+88313410	Msa1002600:CDS
AAGCAGGAGGACTGTAAAGT+TGG	0.489113	6_4:-88313707	None:intergenic
AAGGTATCCCGAAAAGGAGA+GGG	0.619065	6_4:-88310610	None:intergenic
AATATAACCTGAAGGGTTCT+AGG	0.270602	6_4:-88310876	None:intergenic
AATGGACAATCAGTTAGACC+TGG	0.692074	6_4:+88312950	Msa1002600:CDS
AATGTGGCACAAAAGGAAAT+CGG	0.414393	6_4:+88312557	Msa1002600:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGTTAGAATATAACCTGAA+GGG	-	chr6_4:88310886-88310905	None:intergenic	30.0%
AAGGTTAGAATATAACCTGA+AGG	-	chr6_4:88310887-88310906	None:intergenic	30.0%
AAGTTTAACCAATTGAAAGG+AGG	-	chr6_4:88310916-88310935	None:intergenic	30.0%
CCTAAGTTTAACCAATTGAA+AGG	-	chr6_4:88310919-88310938	None:intergenic	30.0%
CCTTTCAATTGGTTAAACTT+AGG	+	chr6_4:88310916-88310935	Msa1002600:intron	30.0%
CACATACTAGCTAATATGTT+CGG	-	chr6_4:88311035-88311054	None:intergenic	30.0%
TTATCTTTAAACATCAGGAC+TGG	+	chr6_4:88311269-88311288	Msa1002600:intron	30.0%
TATCTTTAAACATCAGGACT+GGG	+	chr6_4:88311270-88311289	Msa1002600:intron	30.0%
GGATACCTATAATAAGTATC+AGG	+	chr6_4:88311320-88311339	Msa1002600:intron	30.0%
ATTAGAAACGATCCATGATA+TGG	-	chr6_4:88311579-88311598	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	88310250	88314073	88310250	ID=Msa1002600;Name=Msa1002600
chr6_4	mRNA	88310250	88314073	88310250	ID=Msa1002600-mRNA-1;Parent=Msa1002600;Name=Msa1002600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=56\|0.33\|0.75\|0.75\|1\|1\|4\|234\|522
chr6_4	exon	88310250	88310890	88310250	ID=Msa1002600-mRNA-1:exon:17223;Parent=Msa1002600-mRNA-1
chr6_4	exon	88312539	88312697	88312539	ID=Msa1002600-mRNA-1:exon:17224;Parent=Msa1002600-mRNA-1
chr6_4	exon	88312897	88313001	88312897	ID=Msa1002600-mRNA-1:exon:17225;Parent=Msa1002600-mRNA-1
chr6_4	exon	88313120	88314073	88313120	ID=Msa1002600-mRNA-1:exon:17226;Parent=Msa1002600-mRNA-1
chr6_4	five_prime_UTR	88310250	88310305	88310250	ID=Msa1002600-mRNA-1:five_prime_utr;Parent=Msa1002600-mRNA-1
chr6_4	CDS	88310306	88310890	88310306	ID=Msa1002600-mRNA-1:cds;Parent=Msa1002600-mRNA-1
chr6_4	CDS	88312539	88312697	88312539	ID=Msa1002600-mRNA-1:cds;Parent=Msa1002600-mRNA-1
chr6_4	CDS	88312897	88313001	88312897	ID=Msa1002600-mRNA-1:cds;Parent=Msa1002600-mRNA-1
chr6_4	CDS	88313120	88313839	88313120	ID=Msa1002600-mRNA-1:cds;Parent=Msa1002600-mRNA-1
chr6_4	three_prime_UTR	88313840	88314073	88313840	ID=Msa1002600-mRNA-1:three_prime_utr;Parent=Msa1002600-mRNA-1

Gene Sequence

>Msa1002600

ATGAAGTGCCCATACTGTTCAGCGGCGCAAGGCCGTTGCACAACAACAACCACCGGAAAATCAATCACAGAATGCACATCATGCGGCCGCGTCGTAGAAGAAAGACAATCCCATCCTCACCACATCTTCCACCTGCGCGCCCAAGATAATCCCCTATGTCTCGTCACACCAGATCTCCCTCCCCCCACTCTCAACCAAACCAACACCGAAACCAACGAAGAAGAAGACCCATTCGAGCCCACGGGCTTCATAACCGCTTTCTCAACATGGTCCTTAGAGCCCAGCCCGCTTTACCTTCAATCTTCCCTCTCCTTTTCGGGATACCTTGCGGAACTTGAACGTACTCTTGAATCATCTTCTACGAATTCTTCATCGAGTGTTGTTGTTGATAATCTTAGGGCTTATATGCAGATTATAGATGTTTCGTCGATACTTGGATTGGATTGTGATATTTCTGATCATGCTTTTCAGTTGTTTAGGGATTGTTGTTCTGCTACTTGTTTGAGAAATCGGAGTGTTGAAGCTCTTGCTACTGCTGCTCTTGTTCAGGCTATTCGTGAAGCTCAAGAACCTAGAACCCTTCAGGAAATTTCAATTGCCGCCAATGTGGCACAAAAGGAAATCGGGAAATACATCAAGATACTGGGAGAAGCTTTGCAGCTAAGTCAACCTATTAACAGCAATTCTATATCAGTTCATATGCCAAGATTTTGCACCCTTCTTCAGCTCAATAAATCTGCTCAGGTTCTGAATTTTCTATTGCTGTCTTTGTTCTTTTCTCAACCAAAGGGTTGTGTAATGGACAATCAGTTAGACCTGGCTGGCTGGATGTCCAATGATCACTTTGTGGAACTGGCTACTCACATAGGAGACGTTGTGATCAACAAATGCTTCTGCACTCGCAGGAATCCAATTAGCATCTCAGCTGCCGCCATATATTTGGCTTGCCAACTAGAAGACAAACGCAAAACCCAGGCCGAAATTTGCAAAGTAACTGGTCTAACTGAAGTCACTCTCCGTAAAGTGTATAAAGAATTACTGGAGAATTGGGATGATTTACTTCCCTCTAATTACACCCCAGCTGTTCCTCCGGAGCGGGCATTTCCCACAACCTTAATTGCTTCTGGACGTTCTTCAACAACTAAGGTTGATGCTATAGAGGTTACTTCTTCTTTGGATTCAGAAAATTTGCCGGAATTTAAACCAAACAAACCTAATGAGGCCGAAGGTAAAAGTAATGCTCGTGCAAGCCAATCATCGGCTATTCAGCAGTCAACGTTTTGGCAATCCCAACTTCCCAGTGCGACCCAAAATCATCAAAATCCGAATGTTTTAGATTCAATGGATATTGATGGGTTGCAGCGCAACCACCAACAACCTGAACCCATGGTAGAGGTCACAAATGGTGCTGGTATCGGTAGTTCTCTAAACTCCAACCAACTTTACAGTCCTCCTGCTTCAAGTTCAAGCTCTGTTATGAGGTCGCTTTCGGCTCCTCCTTCATCTGCTCCTCCAAATATTCGACACTTGCAATCGTCTAAGACAATGCCTGGTTTTCCAGAATACTGA

Protein sequence

>Msa1002600

MKCPYCSAAQGRCTTTTTGKSITECTSCGRVVEERQSHPHHIFHLRAQDNPLCLVTPDLPPPTLNQTNTETNEEEDPFEPTGFITAFSTWSLEPSPLYLQSSLSFSGYLAELERTLESSSTNSSSSVVVDNLRAYMQIIDVSSILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVAQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQVLNFLLLSLFFSQPKGCVMDNQLDLAGWMSNDHFVELATHIGDVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTLIASGRSSTTKVDAIEVTSSLDSENLPEFKPNKPNEAEGKSNARASQSSAIQQSTFWQSQLPSATQNHQNPNVLDSMDIDGLQRNHQQPEPMVEVTNGAGIGSSLNSNQLYSPPASSSSSVMRSLSAPPSSAPPNIRHLQSSKTMPGFPEY*