AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693790 MtrunA17_Chr4g0044531 99.242 132 1 0 3 134 89 220 3.94e-91 263
Msa0693790 MtrunA17_Chr5g0401881 71.852 135 36 1 3 135 90 224 6.70e-68 204
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693790 AT4G36910.1 75.373 134 31 1 4 135 103 236 4.80e-70 210
Msa0693790 AT4G34120.1 76.336 131 29 1 4 132 105 235 8.39e-68 205

Find 60 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAACTCACTTTCCTCTAAA+TGG 0.210704 4_4:-62948904 None:intergenic
ATATTAATCATCCACTTTAA+AGG 0.251710 4_4:-62948874 None:intergenic
GTGTAATATAATTTGCAAAT+TGG 0.259555 4_4:+62949061 Msa0693790:three_prime_UTR
GTGTAATATAATTTGCAAAT+TGG 0.259555 4_4:+62949101 Msa0693790:three_prime_UTR
GTTGCCTTCAGCTCCCCTTT+TGG 0.268544 4_4:-62948832 None:intergenic
TTTAATTGAATAACTAATAT+AGG 0.280295 4_4:+62949205 Msa0693790:three_prime_UTR
AATATACTCAAACCATTTAG+AGG 0.307726 4_4:+62948892 Msa0693790:three_prime_UTR
TTAGCAATTGATACAATATC+AGG 0.366237 4_4:+62946726 Msa0693790:CDS
GAGCCTATACATATATTAAC+TGG 0.372485 4_4:-62948989 None:intergenic
GAAGTTGTGATGATACAAAT+AGG 0.392574 4_4:-62949178 None:intergenic
CTCTTAAATCTTGATAGGTA+TGG 0.403749 4_4:+62949011 Msa0693790:three_prime_UTR
TGTTCATGAATCCACTAGTC+TGG 0.413754 4_4:+62947829 Msa0693790:CDS
TCCCTGATGTGGACAGTACT+TGG 0.414548 4_4:+62947081 Msa0693790:CDS
TTCCAAGTACTGTCCACATC+AGG 0.416952 4_4:-62947083 None:intergenic
TATCCAGTTAATATATGTAT+AGG 0.419177 4_4:+62948986 Msa0693790:three_prime_UTR
GAACAGAATAAGTGGTCTTC+CGG 0.425551 4_4:+62946530 Msa0693790:CDS
AATGGATGTATCAGCCCAAA+AGG 0.452200 4_4:+62948817 Msa0693790:three_prime_UTR
TACTGTCCACATCAGGGAAT+AGG 0.457871 4_4:-62947076 None:intergenic
GCTCTGCTGTCAAAGCGCTC+TGG 0.464574 4_4:+62948714 Msa0693790:CDS
AGGCTCTCTTAAATCTTGAT+AGG 0.467271 4_4:+62949006 Msa0693790:three_prime_UTR
TCTTAAATCTTGATAGGTAT+GGG 0.482155 4_4:+62949012 Msa0693790:three_prime_UTR
AATCTTGATAGGTATGGGAT+TGG 0.482379 4_4:+62949017 Msa0693790:three_prime_UTR
GTGCTCCTGTAGTCATAGTC+AGG 0.491378 4_4:+62948774 Msa0693790:three_prime_UTR
GATTGATGATGAATGGAATC+TGG 0.495080 4_4:+62946554 Msa0693790:CDS
GGAAAGAGGATGAGAAGATC+GGG 0.495286 4_4:-62949157 None:intergenic
AGGAAAGAGGATGAGAAGAT+CGG 0.496600 4_4:-62949158 None:intergenic
ACCTTCAGAGACCTTTAAAG+TGG 0.499565 4_4:+62948863 Msa0693790:three_prime_UTR
CACAGAAACAATGTCGGGTA+AGG 0.509548 4_4:-62948933 None:intergenic
TTTCCATCCTTGTCTACCAC+AGG 0.513940 4_4:-62948559 None:intergenic
ATGGATGTATCAGCCCAAAA+GGG 0.515238 4_4:+62948818 Msa0693790:three_prime_UTR
GCTAGGTTGGACTTATTACA+AGG 0.520048 4_4:+62948673 Msa0693790:intron
AAGACCAATGGAAAAGTTGT+CGG 0.522650 4_4:+62947779 Msa0693790:CDS
TTCCGGTGATTGATGATGAA+TGG 0.523754 4_4:+62946547 Msa0693790:CDS
CTAGTCTGGAGGATGCTGCC+AGG 0.524024 4_4:+62947843 Msa0693790:CDS
TCATGAACAACAAGTGGACT+TGG 0.539611 4_4:-62947815 None:intergenic
CAGCCCAAAAGGGGAGCTGA+AGG 0.543325 4_4:+62948828 Msa0693790:three_prime_UTR
CTTGTCAAGAACAGAATAAG+TGG 0.555394 4_4:+62946522 Msa0693790:CDS
TTCCATTCATCATCAATCAC+CGG 0.558122 4_4:-62946549 None:intergenic
GGCAGCATCCTCCAGACTAG+TGG 0.560030 4_4:-62947840 None:intergenic
TGATGATACAAATAGGAAAG+AGG 0.566347 4_4:-62949171 None:intergenic
ATCCACCTGACTATGACTAC+AGG 0.567861 4_4:-62948779 None:intergenic
TGTCAAAGCGCTCTGGTGAG+AGG 0.568489 4_4:+62948721 Msa0693790:CDS
CAACGCACAGAAACAATGTC+GGG 0.580592 4_4:-62948938 None:intergenic
GTGGATTCATGAACAACAAG+TGG 0.591533 4_4:-62947821 None:intergenic
CTACCTGTGGTAGACAAGGA+TGG 0.592308 4_4:+62948556 Msa0693790:CDS
TGCAAGCCTATTCCCTGATG+TGG 0.601040 4_4:+62947070 Msa0693790:CDS
AAGCTGCTTAGTAAGACCAA+TGG 0.603514 4_4:+62947767 Msa0693790:CDS
GGTAGACAAGGATGGAAAGC+TGG 0.604153 4_4:+62948564 Msa0693790:CDS
TCCACTTTAAAGGTCTCTGA+AGG 0.610083 4_4:-62948864 None:intergenic
TCAACGCACAGAAACAATGT+CGG 0.612466 4_4:-62948939 None:intergenic
TCCAAGTACTGTCCACATCA+GGG 0.628366 4_4:-62947082 None:intergenic
ATTAGTTATTCAATTAAACA+AGG 0.633322 4_4:-62949200 None:intergenic
AAAATATCGTCGACTACCTG+TGG 0.634887 4_4:+62948543 Msa0693790:CDS
TCGACTACCTGTGGTAGACA+AGG 0.635380 4_4:+62948552 Msa0693790:CDS
CTAGGTTGGACTTATTACAA+GGG 0.642792 4_4:+62948674 Msa0693790:intron
TAGGTTGGACTTATTACAAG+GGG 0.646121 4_4:+62948675 Msa0693790:intron
TGGATGTATCAGCCCAAAAG+GGG 0.651140 4_4:+62948819 Msa0693790:three_prime_UTR
CTCCTGTAGTCATAGTCAGG+TGG 0.655484 4_4:+62948777 Msa0693790:three_prime_UTR
TCATGAATCCACTAGTCTGG+AGG 0.669039 4_4:+62947832 Msa0693790:CDS
AGGTTGGACTTATTACAAGG+GGG 0.752318 4_4:+62948676 Msa0693790:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAATTGAATAACTAATAT+AGG + chr4_4:62949205-62949224 Msa0693790:three_prime_UTR 10.0%
!! CAAACATTGAAATAAAATAT+GGG - chr4_4:62947530-62947549 None:intergenic 15.0%
!! TCAAACATTGAAATAAAATA+TGG - chr4_4:62947531-62947550 None:intergenic 15.0%
!!! TTTCTTTTTTACGAATAATT+AGG + chr4_4:62947897-62947916 Msa0693790:intron 15.0%
!!! TTCTTTTTTACGAATAATTA+GGG + chr4_4:62947898-62947917 Msa0693790:intron 15.0%
!! TAATTTCTTTCTTATATACT+AGG + chr4_4:62948330-62948349 Msa0693790:intron 15.0%
!! ATTAGTTATTCAATTAAACA+AGG - chr4_4:62949203-62949222 None:intergenic 15.0%
!!! TTTTGTTTTTGTTATAGCTT+TGG + chr4_4:62946494-62946513 Msa0693790:intron 20.0%
!! TGATTAATTTAGTTATGTTG+TGG + chr4_4:62946581-62946600 Msa0693790:intron 20.0%
!!! TTTCGTTTTGTTTCTTTTTT+TGG + chr4_4:62946667-62946686 Msa0693790:intron 20.0%
!!! TTCGTTTTGTTTCTTTTTTT+GGG + chr4_4:62946668-62946687 Msa0693790:intron 20.0%
!!! TACTTTAAAAACCAAAAGAA+TGG - chr4_4:62946808-62946827 None:intergenic 20.0%
!! GTTGTCATATAAACAATAAT+TGG + chr4_4:62947142-62947161 Msa0693790:intron 20.0%
!!! ATAACCAACCATATATTTTA+TGG + chr4_4:62947338-62947357 Msa0693790:intron 20.0%
!!! TAACCAACCATATATTTTAT+GGG + chr4_4:62947339-62947358 Msa0693790:intron 20.0%
!! CAATTAAAATTCCTAGATTA+AGG - chr4_4:62947657-62947676 None:intergenic 20.0%
!!! GTTCTAATTATTGTTTTGTA+TGG + chr4_4:62947723-62947742 Msa0693790:intron 20.0%
!! TATTCGTAAAAAAGAAATAG+TGG - chr4_4:62947894-62947913 None:intergenic 20.0%
!!! TAGTTAGTTTGTTAATAGTT+GGG - chr4_4:62948208-62948227 None:intergenic 20.0%
!!! TTAGTTAGTTTGTTAATAGT+TGG - chr4_4:62948209-62948228 None:intergenic 20.0%
!! TATTAACAAACTAACTAACT+AGG + chr4_4:62948211-62948230 Msa0693790:intron 20.0%
!! TTAAAAAAGATTCAATTCCA+TGG - chr4_4:62948416-62948435 None:intergenic 20.0%
!!! GATATTTTGTCTATTAAGAA+TGG + chr4_4:62948799-62948818 Msa0693790:three_prime_UTR 20.0%
!! ATATTAATCATCCACTTTAA+AGG - chr4_4:62948877-62948896 None:intergenic 20.0%
!! TATCCAGTTAATATATGTAT+AGG + chr4_4:62948986-62949005 Msa0693790:three_prime_UTR 20.0%
!!! GTGTAATATAATTTGCAAAT+TGG + chr4_4:62949061-62949080 Msa0693790:three_prime_UTR 20.0%
!!! GTGTAATATAATTTGCAAAT+TGG + chr4_4:62949061-62949080 Msa0693790:three_prime_UTR 20.0%
! TTAGCAATTGATACAATATC+AGG + chr4_4:62946726-62946745 Msa0693790:CDS 25.0%
!! TTGTTTACTGTACTTTAAAG+TGG + chr4_4:62946771-62946790 Msa0693790:intron 25.0%
! ATCATGATTTGACAGAAAAT+TGG - chr4_4:62947200-62947219 None:intergenic 25.0%
!!! AGGCTGATTTTGTTTTAATA+TGG + chr4_4:62947254-62947273 Msa0693790:intron 25.0%
! TAACCCATAAAATATATGGT+TGG - chr4_4:62947345-62947364 None:intergenic 25.0%
! AGCATAACCCATAAAATATA+TGG - chr4_4:62947349-62947368 None:intergenic 25.0%
! TCATGGGTGAAAATTTAAAT+AGG - chr4_4:62947617-62947636 None:intergenic 25.0%
! TTTGAGAAAAACCTTAATCT+AGG + chr4_4:62947643-62947662 Msa0693790:intron 25.0%
! ACTATTATCATTCTGTTAAC+TGG + chr4_4:62947687-62947706 Msa0693790:intron 25.0%
! ATAACAGGGAAAATAAAACT+GGG - chr4_4:62948172-62948191 None:intergenic 25.0%
!!! AGTTAGTTTGTTAATAGTTG+GGG - chr4_4:62948207-62948226 None:intergenic 25.0%
! ATATGTATGTGAAATGTGAT+AGG - chr4_4:62948259-62948278 None:intergenic 25.0%
! CATTTCACATACATATTGAA+TGG + chr4_4:62948263-62948282 Msa0693790:intron 25.0%
!! TTGATTTTCACATTTTTGCT+AGG + chr4_4:62948656-62948675 Msa0693790:intron 25.0%
! AATATACTCAAACCATTTAG+AGG + chr4_4:62948892-62948911 Msa0693790:three_prime_UTR 25.0%
! TCTTAAATCTTGATAGGTAT+GGG + chr4_4:62949012-62949031 Msa0693790:three_prime_UTR 25.0%
!!! TGTTTTTGTTATAGCTTTGG+AGG + chr4_4:62946497-62946516 Msa0693790:intron 30.0%
!!! TTTCTTTTTTTGGGTGATGT+AGG + chr4_4:62946677-62946696 Msa0693790:intron 30.0%
TGATACAATATCAGGTACAT+AGG + chr4_4:62946734-62946753 Msa0693790:intron 30.0%
! CGAAATTTCAACCATTCTTT+TGG + chr4_4:62946794-62946813 Msa0693790:intron 30.0%
GCAAACAGACATAAACATAT+CGG - chr4_4:62946928-62946947 None:intergenic 30.0%
! AGAAACAGTAGTTTCTGTTT+TGG + chr4_4:62946961-62946980 Msa0693790:intron 30.0%
! GAAACAGTAGTTTCTGTTTT+GGG + chr4_4:62946962-62946981 Msa0693790:intron 30.0%
TTGTTTATATGACAACAGCA+AGG - chr4_4:62947138-62947157 None:intergenic 30.0%
CATCTTAAATTGATGCTAAC+TGG + chr4_4:62947225-62947244 Msa0693790:intron 30.0%
!!! TATGCTCACAAGTTTTGATT+TGG + chr4_4:62947312-62947331 Msa0693790:intron 30.0%
!!! ATGCTCACAAGTTTTGATTT+GGG + chr4_4:62947313-62947332 Msa0693790:intron 30.0%
!! CAAATATAGAAGTGTTGCAT+TGG - chr4_4:62947467-62947486 None:intergenic 30.0%
AAAATATGGGAAATGCTAAC+CGG - chr4_4:62947517-62947536 None:intergenic 30.0%
! TTTTCTCAAATGCATGTCAT+GGG - chr4_4:62947633-62947652 None:intergenic 30.0%
! TTTTTCTCAAATGCATGTCA+TGG - chr4_4:62947634-62947653 None:intergenic 30.0%
GATAACAGGGAAAATAAAAC+TGG - chr4_4:62948173-62948192 None:intergenic 30.0%
!! GTTAGTTTGTTAATAGTTGG+GGG - chr4_4:62948206-62948225 None:intergenic 30.0%
ATCAGTAACATAATAGTGAG+AGG - chr4_4:62948296-62948315 None:intergenic 30.0%
ACTAGGACAGCAAAAATATA+TGG + chr4_4:62948347-62948366 Msa0693790:intron 30.0%
ATGGATACGTGTAAATCAAA+TGG - chr4_4:62948397-62948416 None:intergenic 30.0%
! ATTTGATTTACACGTATCCA+TGG + chr4_4:62948396-62948415 Msa0693790:intron 30.0%
ACAACCAAGATTGTCATTAT+AGG - chr4_4:62948463-62948482 None:intergenic 30.0%
ACACTATTACTTCTTGTACT+AGG + chr4_4:62948506-62948525 Msa0693790:intron 30.0%
! TTTTCACATTTTTGCTAGGT+TGG + chr4_4:62948660-62948679 Msa0693790:intron 30.0%
ATAACTCACTTTCCTCTAAA+TGG - chr4_4:62948907-62948926 None:intergenic 30.0%
!!! TTCTGTGCGTTGAATTTTTT+AGG + chr4_4:62948949-62948968 Msa0693790:three_prime_UTR 30.0%
GAGCCTATACATATATTAAC+TGG - chr4_4:62948992-62949011 None:intergenic 30.0%
CTCTTAAATCTTGATAGGTA+TGG + chr4_4:62949011-62949030 Msa0693790:three_prime_UTR 30.0%
TGATGATACAAATAGGAAAG+AGG - chr4_4:62949174-62949193 None:intergenic 30.0%
GAAGTTGTGATGATACAAAT+AGG - chr4_4:62949181-62949200 None:intergenic 30.0%
CTTGTCAAGAACAGAATAAG+TGG + chr4_4:62946522-62946541 Msa0693790:CDS 35.0%
TTCCATTCATCATCAATCAC+CGG - chr4_4:62946552-62946571 None:intergenic 35.0%
!! GATTGATGATGAATGGAATC+TGG + chr4_4:62946554-62946573 Msa0693790:CDS 35.0%
!!! TTTTTTTGGGTGATGTAGGT+TGG + chr4_4:62946681-62946700 Msa0693790:intron 35.0%
!! TTCCTTGAAAGCATTGAGAA+TGG + chr4_4:62946843-62946862 Msa0693790:intron 35.0%
AACCATTCTCAATGCTTTCA+AGG - chr4_4:62946848-62946867 None:intergenic 35.0%
TAAAAGCGACAGCAAACAAT+CGG - chr4_4:62947039-62947058 None:intergenic 35.0%
CAGTACTTGGAAAGTAAGTA+TGG + chr4_4:62947094-62947113 Msa0693790:intron 35.0%
!! TTGATGCTAACTGGTTCTAT+AGG + chr4_4:62947234-62947253 Msa0693790:intron 35.0%
AAGACCAATGGAAAAGTTGT+CGG + chr4_4:62947779-62947798 Msa0693790:CDS 35.0%
CAGTATGTAAAATCAGTACC+TGG - chr4_4:62947864-62947883 None:intergenic 35.0%
! ACTTTTGTTCGTTAACCAAC+GGG - chr4_4:62947930-62947949 None:intergenic 35.0%
! CACTTTTGTTCGTTAACCAA+CGG - chr4_4:62947931-62947950 None:intergenic 35.0%
CAAAGCTAAGAGGAGTTAAT+AGG - chr4_4:62948019-62948038 None:intergenic 35.0%
! TGATGCTTGTTGATACATAC+TGG + chr4_4:62948037-62948056 Msa0693790:intron 35.0%
! TTTTTACTGCTTAGACTTCG+AGG + chr4_4:62948061-62948080 Msa0693790:intron 35.0%
! TTTTACTGCTTAGACTTCGA+GGG + chr4_4:62948062-62948081 Msa0693790:intron 35.0%
TCTAGTCATTTCAGAGAGTT+GGG - chr4_4:62948114-62948133 None:intergenic 35.0%
ATCTAGTCATTTCAGAGAGT+TGG - chr4_4:62948115-62948134 None:intergenic 35.0%
TGGGCTATAAATAAGAAGAG+GGG - chr4_4:62948153-62948172 None:intergenic 35.0%
CTGGGCTATAAATAAGAAGA+GGG - chr4_4:62948154-62948173 None:intergenic 35.0%
ACTGGGCTATAAATAAGAAG+AGG - chr4_4:62948155-62948174 None:intergenic 35.0%
ACTAGGTAAATAACTGACCA+AGG + chr4_4:62948228-62948247 Msa0693790:intron 35.0%
CTAGGTAAATAACTGACCAA+GGG + chr4_4:62948229-62948248 Msa0693790:intron 35.0%
TAGGTAAATAACTGACCAAG+GGG + chr4_4:62948230-62948249 Msa0693790:intron 35.0%
CCAAGATTGTCATTATAGGA+TGG - chr4_4:62948459-62948478 None:intergenic 35.0%
CCATCCTATAATGACAATCT+TGG + chr4_4:62948456-62948475 Msa0693790:intron 35.0%
GTACAAGAAGTAATAGTGTC+AGG - chr4_4:62948505-62948524 None:intergenic 35.0%
! CTAGGTTGGACTTATTACAA+GGG + chr4_4:62948674-62948693 Msa0693790:intron 35.0%
! TAGGTTGGACTTATTACAAG+GGG + chr4_4:62948675-62948694 Msa0693790:intron 35.0%
TACAAGGGGGAATATTGTTA+AGG + chr4_4:62948689-62948708 Msa0693790:CDS 35.0%
AGGCTCTCTTAAATCTTGAT+AGG + chr4_4:62949006-62949025 Msa0693790:three_prime_UTR 35.0%
AATCTTGATAGGTATGGGAT+TGG + chr4_4:62949017-62949036 Msa0693790:three_prime_UTR 35.0%
GAACAGAATAAGTGGTCTTC+CGG + chr4_4:62946530-62946549 Msa0693790:CDS 40.0%
!! TTCCGGTGATTGATGATGAA+TGG + chr4_4:62946547-62946566 Msa0693790:CDS 40.0%
!!! GATTGTTTGCTGTCGCTTTT+AGG + chr4_4:62947038-62947057 Msa0693790:intron 40.0%
!! CTGACAAAATGAGTGGATTG+AGG - chr4_4:62947576-62947595 None:intergenic 40.0%
! CTCAATCCACTCATTTTGTC+AGG + chr4_4:62947574-62947593 Msa0693790:intron 40.0%
AAGCTGCTTAGTAAGACCAA+TGG + chr4_4:62947767-62947786 Msa0693790:CDS 40.0%
! TCATGAACAACAAGTGGACT+TGG - chr4_4:62947818-62947837 None:intergenic 40.0%
GTGGATTCATGAACAACAAG+TGG - chr4_4:62947824-62947843 None:intergenic 40.0%
TGTTCATGAATCCACTAGTC+TGG + chr4_4:62947829-62947848 Msa0693790:CDS 40.0%
TAATTAGGGAAGAATCCCGT+TGG + chr4_4:62947912-62947931 Msa0693790:intron 40.0%
GCAATCTCTCAATTTCCCAA+AGG + chr4_4:62947968-62947987 Msa0693790:intron 40.0%
TTGTCAACGGAGAATCCTTT+GGG - chr4_4:62947986-62948005 None:intergenic 40.0%
AGGAGGAACTATCTTGTCAA+CGG - chr4_4:62947999-62948018 None:intergenic 40.0%
AGCTAAGAGGAGTTAATAGG+AGG - chr4_4:62948016-62948035 None:intergenic 40.0%
CAACAAGCATCAAAGCTAAG+AGG - chr4_4:62948029-62948048 None:intergenic 40.0%
TTTGTTAATAGTTGGGGGCT+GGG - chr4_4:62948201-62948220 None:intergenic 40.0%
AAATGTGATAGGTAACCCCT+TGG - chr4_4:62948248-62948267 None:intergenic 40.0%
AAGTAATAGTGTCAGGCATC+AGG - chr4_4:62948498-62948517 None:intergenic 40.0%
! AAAATATCGTCGACTACCTG+TGG + chr4_4:62948543-62948562 Msa0693790:CDS 40.0%
! GCTAGGTTGGACTTATTACA+AGG + chr4_4:62948673-62948692 Msa0693790:intron 40.0%
AGGTTGGACTTATTACAAGG+GGG + chr4_4:62948676-62948695 Msa0693790:intron 40.0%
AAGGGGGAATATTGTTAAGG+CGG + chr4_4:62948692-62948711 Msa0693790:CDS 40.0%
AATGGATGTATCAGCCCAAA+AGG + chr4_4:62948817-62948836 Msa0693790:three_prime_UTR 40.0%
ATGGATGTATCAGCCCAAAA+GGG + chr4_4:62948818-62948837 Msa0693790:three_prime_UTR 40.0%
! ACCTTCAGAGACCTTTAAAG+TGG + chr4_4:62948863-62948882 Msa0693790:three_prime_UTR 40.0%
! TCCACTTTAAAGGTCTCTGA+AGG - chr4_4:62948867-62948886 None:intergenic 40.0%
TCAACGCACAGAAACAATGT+CGG - chr4_4:62948942-62948961 None:intergenic 40.0%
AGGAAAGAGGATGAGAAGAT+CGG - chr4_4:62949161-62949180 None:intergenic 40.0%
TACTGTCCACATCAGGGAAT+AGG - chr4_4:62947079-62947098 None:intergenic 45.0%
! TCCAAGTACTGTCCACATCA+GGG - chr4_4:62947085-62947104 None:intergenic 45.0%
! TTCCAAGTACTGTCCACATC+AGG - chr4_4:62947086-62947105 None:intergenic 45.0%
TTCCTTAACCAGTGCCTTAG+GGG - chr4_4:62947387-62947406 None:intergenic 45.0%
CTTCCTTAACCAGTGCCTTA+GGG - chr4_4:62947388-62947407 None:intergenic 45.0%
ACTTCCTTAACCAGTGCCTT+AGG - chr4_4:62947389-62947408 None:intergenic 45.0%
TTTCCTTAGCAAGATCCCCA+GGG + chr4_4:62947487-62947506 Msa0693790:intron 45.0%
! GTCACCGACAACTTTTCCAT+TGG - chr4_4:62947786-62947805 None:intergenic 45.0%
! TCATGAATCCACTAGTCTGG+AGG + chr4_4:62947832-62947851 Msa0693790:CDS 45.0%
CTTGTCAACGGAGAATCCTT+TGG - chr4_4:62947987-62948006 None:intergenic 45.0%
TAAGAAGAGGGGTTGAGAGA+AGG - chr4_4:62948142-62948161 None:intergenic 45.0%
! GTTTGTTAATAGTTGGGGGC+TGG - chr4_4:62948202-62948221 None:intergenic 45.0%
TTTCCATCCTTGTCTACCAC+AGG - chr4_4:62948562-62948581 None:intergenic 45.0%
ATCCACCTGACTATGACTAC+AGG - chr4_4:62948782-62948801 None:intergenic 45.0%
TGGATGTATCAGCCCAAAAG+GGG + chr4_4:62948819-62948838 Msa0693790:three_prime_UTR 45.0%
CACAGAAACAATGTCGGGTA+AGG - chr4_4:62948936-62948955 None:intergenic 45.0%
CAACGCACAGAAACAATGTC+GGG - chr4_4:62948941-62948960 None:intergenic 45.0%
GGAAAGAGGATGAGAAGATC+GGG - chr4_4:62949160-62949179 None:intergenic 45.0%
TGCAAGCCTATTCCCTGATG+TGG + chr4_4:62947070-62947089 Msa0693790:CDS 50.0%
TCCCTGATGTGGACAGTACT+TGG + chr4_4:62947081-62947100 Msa0693790:CDS 50.0%
GTTTCCTTAGCAAGATCCCC+AGG + chr4_4:62947486-62947505 Msa0693790:intron 50.0%
TTCCTTAGCAAGATCCCCAG+GGG + chr4_4:62947488-62947507 Msa0693790:intron 50.0%
GCAGCACCTGACAAAATGAG+TGG - chr4_4:62947583-62947602 None:intergenic 50.0%
TTTCAGAGAGTTGGGCCTTC+CGG - chr4_4:62948106-62948125 None:intergenic 50.0%
TCGACTACCTGTGGTAGACA+AGG + chr4_4:62948552-62948571 Msa0693790:CDS 50.0%
CTACCTGTGGTAGACAAGGA+TGG + chr4_4:62948556-62948575 Msa0693790:CDS 50.0%
GGTAGACAAGGATGGAAAGC+TGG + chr4_4:62948564-62948583 Msa0693790:CDS 50.0%
GTGCTCCTGTAGTCATAGTC+AGG + chr4_4:62948774-62948793 Msa0693790:three_prime_UTR 50.0%
CTCCTGTAGTCATAGTCAGG+TGG + chr4_4:62948777-62948796 Msa0693790:three_prime_UTR 50.0%
! TTGCCTTCAGCTCCCCTTTT+GGG - chr4_4:62948834-62948853 None:intergenic 50.0%
TAACCAGTGCCTTAGGGGCA+CGG - chr4_4:62947382-62947401 None:intergenic 55.0%
!! TGCCCCTAAGGCACTGGTTA+AGG + chr4_4:62947382-62947401 Msa0693790:intron 55.0%
TCCTTAGCAAGATCCCCAGG+GGG + chr4_4:62947489-62947508 Msa0693790:intron 55.0%
GTCTGTAACCTCCCACATGC+CGG + chr4_4:62948084-62948103 Msa0693790:intron 55.0%
AATAGTTGGGGGCTGGGACT+GGG - chr4_4:62948195-62948214 None:intergenic 55.0%
TAATAGTTGGGGGCTGGGAC+TGG - chr4_4:62948196-62948215 None:intergenic 55.0%
! TGTCAAAGCGCTCTGGTGAG+AGG + chr4_4:62948721-62948740 Msa0693790:CDS 55.0%
! GTTGCCTTCAGCTCCCCTTT+TGG - chr4_4:62948835-62948854 None:intergenic 55.0%
AATGCTAACCGGTGCCCCCT+GGG - chr4_4:62947506-62947525 None:intergenic 60.0%
AAATGCTAACCGGTGCCCCC+TGG - chr4_4:62947507-62947526 None:intergenic 60.0%
GGCAGCATCCTCCAGACTAG+TGG - chr4_4:62947843-62947862 None:intergenic 60.0%
CTAGTCTGGAGGATGCTGCC+AGG + chr4_4:62947843-62947862 Msa0693790:CDS 60.0%
GTAACCTCCCACATGCCGGA+AGG + chr4_4:62948088-62948107 Msa0693790:intron 60.0%
AGTTGGGCCTTCCGGCATGT+GGG - chr4_4:62948098-62948117 None:intergenic 60.0%
GGGCTGGGACTGGGATAACA+GGG - chr4_4:62948186-62948205 None:intergenic 60.0%
! GCTCTGCTGTCAAAGCGCTC+TGG + chr4_4:62948714-62948733 Msa0693790:CDS 60.0%
CAGCCCAAAAGGGGAGCTGA+AGG + chr4_4:62948828-62948847 Msa0693790:three_prime_UTR 60.0%
ACCTGTGCACCGTGCCCCTA+AGG + chr4_4:62947370-62947389 Msa0693790:intron 65.0%
GCCCCCTGGGGATCTTGCTA+AGG - chr4_4:62947493-62947512 None:intergenic 65.0%
ATGCTAACCGGTGCCCCCTG+GGG - chr4_4:62947505-62947524 None:intergenic 65.0%
GAGTTGGGCCTTCCGGCATG+TGG - chr4_4:62948099-62948118 None:intergenic 65.0%
GGGGCTGGGACTGGGATAAC+AGG - chr4_4:62948187-62948206 None:intergenic 65.0%
! GCCTTAGGGGCACGGTGCAC+AGG - chr4_4:62947374-62947393 None:intergenic 70.0%
GCACCGTGCCCCTAAGGCAC+TGG + chr4_4:62947376-62947395 Msa0693790:intron 70.0%
! GCAAGATCCCCAGGGGGCAC+CGG + chr4_4:62947495-62947514 Msa0693790:intron 70.0%
TGGGCCTTCCGGCATGTGGG+AGG - chr4_4:62948095-62948114 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 62946482 62949231 62946482 ID=Msa0693790;Name=Msa0693790
chr4_4 mRNA 62946482 62949231 62946482 ID=Msa0693790-mRNA-1;Parent=Msa0693790;Name=Msa0693790-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0.5|0.42|0.85|1|1|7|479|135
chr4_4 exon 62946482 62946487 62946482 ID=Msa0693790-mRNA-1:exon:17647;Parent=Msa0693790-mRNA-1
chr4_4 exon 62946519 62946575 62946519 ID=Msa0693790-mRNA-1:exon:17648;Parent=Msa0693790-mRNA-1
chr4_4 exon 62946699 62946747 62946699 ID=Msa0693790-mRNA-1:exon:17649;Parent=Msa0693790-mRNA-1
chr4_4 exon 62947060 62947106 62947060 ID=Msa0693790-mRNA-1:exon:17650;Parent=Msa0693790-mRNA-1
chr4_4 exon 62947749 62947864 62947749 ID=Msa0693790-mRNA-1:exon:17651;Parent=Msa0693790-mRNA-1
chr4_4 exon 62948528 62948585 62948528 ID=Msa0693790-mRNA-1:exon:17652;Parent=Msa0693790-mRNA-1
chr4_4 exon 62948678 62949231 62948678 ID=Msa0693790-mRNA-1:exon:17653;Parent=Msa0693790-mRNA-1
chr4_4 CDS 62946482 62946487 62946482 ID=Msa0693790-mRNA-1:cds;Parent=Msa0693790-mRNA-1
chr4_4 CDS 62946519 62946575 62946519 ID=Msa0693790-mRNA-1:cds;Parent=Msa0693790-mRNA-1
chr4_4 CDS 62946699 62946747 62946699 ID=Msa0693790-mRNA-1:cds;Parent=Msa0693790-mRNA-1
chr4_4 CDS 62947060 62947106 62947060 ID=Msa0693790-mRNA-1:cds;Parent=Msa0693790-mRNA-1
chr4_4 CDS 62947749 62947864 62947749 ID=Msa0693790-mRNA-1:cds;Parent=Msa0693790-mRNA-1
chr4_4 CDS 62948528 62948585 62948528 ID=Msa0693790-mRNA-1:cds;Parent=Msa0693790-mRNA-1
chr4_4 CDS 62948678 62948752 62948678 ID=Msa0693790-mRNA-1:cds;Parent=Msa0693790-mRNA-1
chr4_4 three_prime_UTR 62948753 62949231 62948753 ID=Msa0693790-mRNA-1:three_prime_utr;Parent=Msa0693790-mRNA-1
Gene Sequence

>Msa0693790

ATGGTTGCTCTTGTCAAGAACAGAATAAGTGGTCTTCCGGTGATTGATGATGAATGGAATCTGGTTGGAGTTGTTTCAGATTATGACTTGTTAGCAATTGATACAATATCAGGTAGCAGTGATGCAAGCCTATTCCCTGATGTGGACAGTACTTGGAAAACATTCAATGAGATACAAAAGCTGCTTAGTAAGACCAATGGAAAAGTTGTCGGTGACTTAATGACTCCAAGTCCACTTGTTGTTCATGAATCCACTAGTCTGGAGGATGCTGCCAGGCTGTTGCTTGAAACAAAATATCGTCGACTACCTGTGGTAGACAAGGATGGAAAGCTGGTTGGACTTATTACAAGGGGGAATATTGTTAAGGCGGCTCTGCTGTCAAAGCGCTCTGGTGAGAGGCTCGCATAG

Protein sequence

>Msa0693790

MVALVKNRISGLPVIDDEWNLVGVVSDYDLLAIDTISGSSDASLFPDVDSTWKTFNEIQKLLSKTNGKVVGDLMTPSPLVVHESTSLEDAARLLLETKYRRLPVVDKDGKLVGLITRGNIVKAALLSKRSGERLA*