AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000590 MtrunA17_Chr8g0377071 97.340 188 5 0 1 188 544 731 5.10e-132 386
Msa0000590 MtrunA17_Chr3g0122781 77.778 198 29 1 1 183 575 772 2.26e-103 314
Msa0000590 MtrunA17_Chr4g0057791 72.667 150 40 1 1 150 379 527 1.33e-73 230
Msa0000590 MtrunA17_Chr2g0293491 48.529 136 60 2 2 136 164 290 3.97e-40 137
Msa0000590 MtrunA17_Chr4g0051261 48.529 136 60 2 2 136 164 290 1.68e-39 136
Msa0000590 MtrunA17_Chr3g0130781 40.994 161 81 3 1 151 190 346 7.03e-35 127
Msa0000590 MtrunA17_Chr1g0187371 45.185 135 65 3 2 136 186 311 2.56e-34 123
Msa0000590 MtrunA17_Chr4g0002001 45.455 132 63 1 2 133 181 303 1.34e-32 119
Msa0000590 MtrunA17_Chr3g0131861 38.547 179 94 4 2 180 258 420 7.29e-30 114
Msa0000590 MtrunA17_Chr3g0093391 38.509 161 88 2 2 160 198 349 8.82e-30 114
Msa0000590 MtrunA17_Chr3g0093571 36.932 176 92 3 2 175 200 358 9.55e-30 114
Msa0000590 MtrunA17_Chr2g0286421 39.241 158 88 3 2 159 263 412 1.19e-29 114
Msa0000590 MtrunA17_Chr4g0040141 39.241 158 88 3 2 159 290 439 3.08e-29 113
Msa0000590 MtrunA17_Chr6g0483151 36.757 185 90 5 2 169 172 346 5.22e-29 110
Msa0000590 MtrunA17_Chr5g0396361 39.506 162 82 3 2 159 301 450 9.77e-29 111
Msa0000590 MtrunA17_Chr4g0066691 39.241 158 88 3 2 159 265 414 1.21e-28 111
Msa0000590 MtrunA17_Chr3g0099951 40.845 142 69 3 8 146 180 309 2.21e-28 109
Msa0000590 MtrunA17_Chr2g0317501 37.500 184 95 5 2 185 295 458 4.04e-28 110
Msa0000590 MtrunA17_Chr7g0273601 37.975 158 90 3 2 159 268 417 7.04e-26 103
Msa0000590 MtrunA17_Chr8g0385971 35.196 179 100 4 2 180 251 413 8.92e-26 103
Msa0000590 MtrunA17_Chr8g0390341 41.045 134 73 1 6 139 292 419 1.52e-25 102
Msa0000590 MtrunA17_Chr4g0061141 34.132 167 94 4 2 161 266 423 1.56e-25 102
Msa0000590 MtrunA17_Chr8g0358921 40.000 135 73 1 2 136 212 338 1.81e-25 100
Msa0000590 MtrunA17_Chr2g0324461 35.165 182 96 5 2 182 302 462 2.56e-25 102
Msa0000590 MtrunA17_Chr4g0030231 43.939 132 68 4 2 133 201 326 2.13e-24 98.2
Msa0000590 MtrunA17_Chr6g0486031 36.806 144 83 3 6 147 279 416 2.34e-24 98.6
Msa0000590 MtrunA17_Chr6g0453711 34.946 186 98 6 2 178 271 442 2.49e-24 99.4
Msa0000590 MtrunA17_Chr7g0218071 33.129 163 92 3 2 159 281 431 9.52e-24 97.4
Msa0000590 MtrunA17_Chr7g0248461 37.879 132 76 3 2 133 199 324 1.88e-23 95.5
Msa0000590 MtrunA17_Chr8g0350311 33.333 177 87 5 2 161 300 462 2.77e-23 95.9
Msa0000590 MtrunA17_Chr1g0193081 36.486 148 72 5 6 147 240 371 3.05e-23 95.1
Msa0000590 MtrunA17_Chr8g0387401 35.393 178 98 6 2 168 213 384 3.16e-23 95.1
Msa0000590 MtrunA17_Chr7g0246591 35.443 158 77 5 2 148 302 445 4.06e-23 95.5
Msa0000590 MtrunA17_Chr1g0191221 35.443 158 94 3 2 159 283 432 6.13e-23 95.1
Msa0000590 MtrunA17_Chr2g0284091 36.364 154 73 5 6 148 205 344 1.77e-22 92.8
Msa0000590 MtrunA17_Chr8g0378831 37.762 143 73 4 2 139 194 325 2.76e-22 92.4
Msa0000590 MtrunA17_Chr1g0194201 36.364 143 71 4 6 142 240 368 3.46e-22 92.4
Msa0000590 MtrunA17_Chr8g0348481 36.090 133 77 3 2 133 198 323 1.09e-21 90.5
Msa0000590 MtrunA17_Chr7g0270371 35.664 143 72 4 6 142 240 368 1.14e-21 90.9
Msa0000590 MtrunA17_Chr2g0320011 34.266 143 74 4 6 142 253 381 2.42e-21 90.1
Msa0000590 MtrunA17_Chr2g0277011 35.135 148 74 5 2 142 251 383 3.81e-21 89.7
Msa0000590 MtrunA17_Chr5g0397261 34.463 177 99 5 2 167 202 372 6.82e-21 88.6
Msa0000590 MtrunA17_Chr4g0045841 36.765 136 71 3 2 133 216 340 7.55e-21 88.6
Msa0000590 MtrunA17_Chr4g0030151 36.765 136 78 2 2 136 200 328 1.55e-20 87.4
Msa0000590 MtrunA17_Chr8g0369451 35.252 139 75 3 2 136 159 286 8.98e-20 85.9
Msa0000590 MtrunA17_Chr5g0409421 36.296 135 71 3 6 136 163 286 1.61e-19 85.1
Msa0000590 MtrunA17_Chr8g0339221 37.692 130 69 3 8 134 165 285 2.31e-19 84.7
Msa0000590 MtrunA17_Chr3g0141871 39.007 141 78 3 2 141 194 327 2.62e-19 84.0
Msa0000590 MtrunA17_Chr3g0102571 34.416 154 86 4 2 151 242 384 4.47e-19 83.6
Msa0000590 MtrunA17_Chr1g0201571 49.231 65 33 0 2 66 287 351 8.50e-18 80.5
Msa0000590 MtrunA17_Chr4g0053821 34.014 147 84 5 2 141 242 382 1.09e-16 77.0
Msa0000590 MtrunA17_Chr8g0360761 38.583 127 56 3 8 134 81 185 1.17e-16 74.3
Msa0000590 MtrunA17_Chr4g0065851 36.719 128 72 3 8 133 196 316 1.36e-16 77.0
Msa0000590 MtrunA17_Chr8g0359091 40.299 134 73 2 2 134 191 318 3.21e-16 75.9
Msa0000590 MtrunA17_Chr3g0102601 35.338 133 71 4 8 136 86 207 3.36e-16 74.3
Msa0000590 MtrunA17_Chr8g0392811 34.815 135 79 3 2 134 282 409 4.24e-16 75.5
Msa0000590 MtrunA17_Chr4g0030241 53.226 62 29 0 2 63 62 123 6.29e-16 72.0
Msa0000590 MtrunA17_Chr5g0401371 33.803 142 81 5 2 136 268 403 9.79e-16 74.3
Msa0000590 MtrunA17_Chr2g0287271 35.556 135 78 3 2 134 190 317 6.07e-15 72.0
Msa0000590 MtrunA17_Chr5g0443351 38.346 133 75 2 2 133 187 313 8.38e-15 71.6
Msa0000590 MtrunA17_Chr4g0053951 31.507 146 79 5 2 136 273 408 1.27e-14 70.9
Msa0000590 MtrunA17_Chr8g0383451 46.774 62 33 0 2 63 159 220 1.85e-14 70.5
Msa0000590 MtrunA17_Chr6g0482681 40.741 135 69 5 2 133 254 380 4.00e-14 69.7
Msa0000590 MtrunA17_Chr8g0369241 53.968 63 23 2 2 59 298 359 3.25e-13 67.4
Msa0000590 MtrunA17_Chr2g0314321 38.793 116 65 1 19 134 225 334 9.91e-13 65.9
Msa0000590 MtrunA17_Chr3g0096631 36.496 137 74 4 2 134 190 317 1.16e-12 65.5
Msa0000590 MtrunA17_Chr3g0139371 33.813 139 79 3 8 134 262 399 2.04e-12 64.7
Msa0000590 MtrunA17_Chr5g0437131 34.783 138 78 6 8 136 574 708 5.82e-12 63.5
Msa0000590 MtrunA17_Chr6g0480541 31.579 133 83 4 8 133 1069 1200 5.66e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000590 AT1G67580.1 87.234 188 24 0 1 188 565 752 2.45e-118 352
Msa0000590 AT1G67580.2 87.234 188 24 0 1 188 565 752 2.45e-118 352
Msa0000590 AT5G63370.2 69.799 149 45 0 1 149 327 475 3.30e-72 226
Msa0000590 AT5G63370.3 69.799 149 45 0 1 149 327 475 3.30e-72 226
Msa0000590 AT5G63370.7 69.799 149 45 0 1 149 461 609 2.11e-71 227
Msa0000590 AT5G63370.8 69.799 149 45 0 1 149 461 609 2.11e-71 227
Msa0000590 AT5G63370.4 69.799 149 45 0 1 149 461 609 2.11e-71 227
Msa0000590 AT5G63370.6 69.799 149 45 0 1 149 461 609 2.11e-71 227
Msa0000590 AT5G63370.1 69.799 149 45 0 1 149 461 609 2.11e-71 227
Msa0000590 AT1G20930.1 47.059 136 63 2 2 137 184 310 1.50e-38 134
Msa0000590 AT3G48750.1 49.630 135 60 1 2 136 164 290 8.54e-38 132
Msa0000590 AT1G76540.1 44.853 136 66 2 2 137 182 308 9.96e-37 130
Msa0000590 AT5G63370.9 66.667 87 29 0 1 87 327 413 1.22e-35 129
Msa0000590 AT5G63610.1 42.045 176 88 4 1 166 195 366 2.10e-35 129
Msa0000590 AT5G63370.5 66.667 87 29 0 1 87 461 547 2.37e-35 130
Msa0000590 AT5G63370.10 66.667 87 29 0 1 87 461 547 2.37e-35 130
Msa0000590 AT1G18040.1 43.571 140 68 3 8 146 176 305 7.25e-34 124
Msa0000590 AT2G38620.4 44.697 132 64 1 2 133 119 241 1.15e-33 120
Msa0000590 AT3G54180.1 45.455 132 63 1 2 133 179 301 1.59e-33 121
Msa0000590 AT5G64960.2 37.778 180 98 4 2 178 148 316 4.63e-33 123
Msa0000590 AT2G38620.2 44.697 132 64 1 2 133 181 303 4.96e-33 120
Msa0000590 AT5G64960.1 37.778 180 98 4 2 178 201 369 8.00e-33 122
Msa0000590 AT5G50860.2 39.362 188 94 6 2 188 275 443 2.31e-32 121
Msa0000590 AT5G10270.1 39.888 178 97 5 2 178 201 369 2.82e-32 121
Msa0000590 AT5G50860.1 39.362 188 94 6 2 188 275 443 5.08e-32 121
Msa0000590 AT1G73690.1 36.898 187 103 5 2 184 169 344 1.00e-31 118
Msa0000590 AT3G01085.1 35.165 182 109 2 2 182 276 449 1.94e-31 119
Msa0000590 AT3G01085.2 35.165 182 109 2 2 182 276 449 1.94e-31 119
Msa0000590 AT3G01085.3 35.165 182 109 2 2 182 276 449 2.17e-31 119
Msa0000590 AT1G71530.2 39.873 158 87 3 2 159 308 457 2.92e-29 112
Msa0000590 AT1G71530.1 37.500 184 98 4 2 185 308 474 6.17e-29 112
Msa0000590 AT1G53050.2 40.741 162 80 4 2 159 295 444 8.52e-29 112
Msa0000590 AT1G53050.1 40.741 162 80 4 2 159 295 444 8.52e-29 112
Msa0000590 AT1G66750.1 41.727 139 70 3 2 139 171 299 1.64e-28 108
Msa0000590 AT5G39420.1 36.709 158 92 2 2 159 266 415 2.85e-28 110
Msa0000590 AT1G03740.1 37.778 180 94 6 2 175 374 541 6.92e-28 109
Msa0000590 AT1G03740.2 37.778 180 94 6 2 175 374 541 7.45e-28 109
Msa0000590 AT1G74330.3 37.107 159 90 3 2 159 284 433 2.72e-26 105
Msa0000590 AT1G74330.2 37.107 159 90 3 2 159 284 433 3.21e-26 105
Msa0000590 AT1G74330.1 37.107 159 90 3 2 159 284 433 3.35e-26 105
Msa0000590 AT5G44290.7 35.593 177 106 3 2 178 298 466 3.65e-26 104
Msa0000590 AT5G44290.6 35.165 182 100 4 2 178 298 466 4.04e-26 104
Msa0000590 AT5G44290.2 35.165 182 100 4 2 178 298 466 4.11e-26 104
Msa0000590 AT5G44290.5 35.165 182 100 4 2 178 298 466 4.11e-26 104
Msa0000590 AT5G44290.4 35.165 182 100 4 2 178 298 466 4.11e-26 104
Msa0000590 AT5G44290.1 35.165 182 100 4 2 178 298 466 4.11e-26 104
Msa0000590 AT5G44290.3 35.165 182 100 4 2 178 298 466 4.11e-26 104
Msa0000590 AT4G10010.1 36.782 174 94 5 2 175 137 294 4.62e-26 103
Msa0000590 AT1G18670.2 35.329 167 94 4 2 161 293 452 5.06e-26 104
Msa0000590 AT1G18670.1 35.329 167 94 4 2 161 293 452 6.24e-26 104
Msa0000590 AT1G18670.3 35.329 167 94 4 2 161 293 452 6.33e-26 104
Msa0000590 AT4G10010.2 36.782 174 94 5 2 175 317 474 8.21e-26 103
Msa0000590 AT1G54610.1 34.759 187 100 3 2 185 279 446 1.30e-25 103
Msa0000590 AT1G54610.3 34.759 187 100 3 2 185 279 446 1.30e-25 103
Msa0000590 AT1G54610.2 34.759 187 100 3 2 185 279 446 1.30e-25 103
Msa0000590 AT4G28980.3 41.912 136 69 4 6 139 297 424 1.74e-25 102
Msa0000590 AT4G28980.1 41.912 136 69 4 6 139 297 424 1.74e-25 102
Msa0000590 AT4G28980.2 41.912 136 69 4 6 139 297 424 1.74e-25 102
Msa0000590 AT1G09600.1 37.415 147 84 3 2 148 324 462 1.25e-24 100
Msa0000590 AT3G45640.1 36.879 141 83 3 2 142 199 333 5.63e-24 97.4
Msa0000590 AT4G11330.1 38.686 137 68 3 2 133 204 329 8.47e-24 96.7
Msa0000590 AT1G33770.1 35.227 176 98 4 2 177 302 461 1.04e-23 97.8
Msa0000590 AT1G71530.3 42.308 130 67 3 2 131 308 429 1.91e-23 96.3
Msa0000590 AT4G22940.1 35.976 164 85 5 2 159 265 414 2.68e-23 96.3
Msa0000590 AT4G22940.2 35.976 164 85 5 2 159 265 414 3.11e-23 96.3
Msa0000590 AT3G59790.1 38.636 132 74 3 2 133 221 345 4.23e-23 95.1
Msa0000590 AT1G01560.2 36.364 143 81 4 2 143 201 334 5.22e-23 94.7
Msa0000590 AT4G00720.1 36.076 158 76 5 2 148 299 442 7.76e-23 95.1
Msa0000590 AT4G01370.1 38.636 132 75 3 2 133 204 329 8.56e-23 94.0
Msa0000590 AT1G57700.1 35.632 174 96 4 2 175 307 464 2.89e-22 93.6
Msa0000590 AT3G61160.1 36.301 146 73 4 2 141 263 394 3.11e-22 93.2
Msa0000590 AT3G61160.4 36.301 146 73 4 2 141 263 394 3.30e-22 92.8
Msa0000590 AT3G61160.2 36.301 146 73 4 2 141 270 401 3.40e-22 92.8
Msa0000590 AT4G13020.8 40.157 127 67 3 8 133 174 292 3.47e-22 92.4
Msa0000590 AT4G13020.7 40.157 127 67 3 8 133 165 283 3.57e-22 92.4
Msa0000590 AT4G13020.4 40.157 127 67 3 8 133 165 283 4.24e-22 92.4
Msa0000590 AT4G13020.1 40.157 127 67 3 8 133 165 283 4.24e-22 92.8
Msa0000590 AT4G13020.5 40.157 127 67 3 8 133 174 292 4.28e-22 92.8
Msa0000590 AT4G13020.6 40.157 127 67 3 8 133 165 283 4.38e-22 92.4
Msa0000590 AT4G13020.2 40.157 127 67 3 8 133 173 291 4.43e-22 92.8
Msa0000590 AT4G13020.3 40.157 127 67 3 8 133 173 291 4.45e-22 92.8
Msa0000590 AT1G09840.11 36.806 144 69 5 6 142 121 249 1.16e-21 89.7
Msa0000590 AT4G19110.3 37.121 132 74 4 6 136 107 230 1.26e-21 91.3
Msa0000590 AT1G57870.1 35.811 148 73 5 2 142 243 375 1.28e-21 91.3
Msa0000590 AT1G57870.4 35.811 148 73 5 2 142 243 375 1.28e-21 91.3
Msa0000590 AT1G57870.2 35.811 148 73 5 2 142 243 375 1.28e-21 91.3
Msa0000590 AT3G05840.2 35.664 143 72 4 6 142 238 366 1.30e-21 91.3
Msa0000590 AT3G05840.1 35.664 143 72 4 6 142 238 366 1.30e-21 91.3
Msa0000590 AT1G57870.3 35.811 148 73 5 2 142 243 375 1.44e-21 91.3
Msa0000590 AT5G14640.1 34.694 147 76 4 2 142 235 367 1.66e-21 90.9
Msa0000590 AT5G14640.2 34.694 147 76 4 2 142 235 367 1.66e-21 90.9
Msa0000590 AT4G18710.1 34.177 158 79 5 2 148 201 344 1.93e-21 90.5
Msa0000590 AT4G19110.1 37.121 132 74 4 6 136 163 286 2.12e-21 90.9
Msa0000590 AT4G19110.2 37.121 132 74 4 6 136 163 286 2.32e-21 90.9
Msa0000590 AT2G46070.1 34.586 133 79 3 2 133 202 327 2.78e-21 89.7
Msa0000590 AT2G30980.1 33.333 147 78 4 2 142 233 365 2.81e-21 90.1
Msa0000590 AT1G01560.3 38.281 128 73 3 2 129 201 322 3.00e-21 89.4
Msa0000590 AT1G09840.3 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT1G09840.7 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT1G09840.10 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT1G09840.6 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT1G09840.4 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT1G09840.1 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT1G09840.9 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT1G09840.5 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT1G09840.8 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT1G09840.2 35.811 148 73 5 2 142 244 376 3.06e-21 90.1
Msa0000590 AT2G46070.3 34.586 133 79 3 2 133 236 361 3.76e-21 89.7
Msa0000590 AT1G06390.2 33.333 147 78 4 2 142 231 363 4.49e-21 89.7
Msa0000590 AT1G06390.1 33.333 147 78 4 2 142 231 363 4.49e-21 89.7
Msa0000590 AT5G26751.1 35.664 143 72 4 6 142 234 362 5.09e-21 89.4
Msa0000590 AT5G45430.2 35.338 133 75 4 6 136 163 286 2.18e-20 88.2
Msa0000590 AT5G45430.1 35.338 133 75 4 6 136 163 286 2.26e-20 88.2
Msa0000590 AT3G61160.5 37.984 129 60 4 2 124 263 377 7.67e-20 85.9
Msa0000590 AT2G43790.1 36.029 136 78 2 2 136 224 351 1.63e-19 85.1
Msa0000590 AT1G07880.2 37.736 159 76 5 2 147 194 342 2.54e-19 84.3
Msa0000590 AT1G10210.2 39.706 136 68 4 2 133 194 319 2.62e-19 84.3
Msa0000590 AT1G10210.3 39.706 136 68 4 2 133 194 319 2.62e-19 84.3
Msa0000590 AT1G10210.1 39.706 136 68 4 2 133 194 319 2.62e-19 84.3
Msa0000590 AT1G59580.2 39.706 136 68 4 2 133 194 319 8.58e-19 83.2
Msa0000590 AT1G59580.1 39.706 136 68 4 2 133 194 319 8.58e-19 83.2
Msa0000590 AT2G46070.2 34.959 123 72 3 2 123 202 317 2.50e-18 81.3
Msa0000590 AT3G61160.3 60.714 56 22 0 6 61 267 322 5.23e-18 80.5
Msa0000590 AT3G61160.6 60.714 56 22 0 6 61 274 329 6.01e-18 80.5
Msa0000590 AT3G05050.3 32.609 184 108 5 2 182 299 469 2.40e-17 79.3
Msa0000590 AT3G05050.2 32.609 184 108 5 2 182 299 469 2.40e-17 79.3
Msa0000590 AT3G05050.1 32.609 184 108 5 2 182 299 469 2.40e-17 79.3
Msa0000590 AT4G18710.2 57.143 56 24 0 6 61 199 254 5.26e-17 77.0
Msa0000590 AT2G18170.1 33.577 137 75 3 2 133 194 319 6.72e-17 77.8
Msa0000590 AT5G67380.2 34.507 142 80 5 2 136 230 365 8.36e-17 77.4
Msa0000590 AT5G67380.1 34.507 142 80 5 2 136 263 398 1.01e-16 77.4
Msa0000590 AT4G36450.1 33.562 146 81 5 2 142 191 325 1.10e-16 77.0
Msa0000590 AT2G23080.1 33.571 140 86 3 6 141 191 327 1.48e-16 76.6
Msa0000590 AT5G19010.1 37.037 135 76 3 2 134 190 317 2.78e-16 76.3
Msa0000590 AT2G01450.3 34.328 134 81 2 2 134 181 308 7.46e-16 75.1
Msa0000590 AT2G01450.1 34.328 134 81 2 2 134 181 308 7.46e-16 75.1
Msa0000590 AT2G01450.2 34.328 134 81 2 2 134 181 308 7.46e-16 75.1
Msa0000590 AT2G01450.4 34.328 134 81 2 2 134 181 308 7.46e-16 75.1
Msa0000590 AT2G38620.3 54.386 57 26 0 2 58 181 237 7.55e-16 73.6
Msa0000590 AT2G38620.1 54.386 57 26 0 2 58 181 237 7.55e-16 73.6
Msa0000590 AT3G50000.1 32.653 147 86 4 2 141 257 397 1.42e-15 73.9
Msa0000590 AT1G73670.1 35.821 134 77 3 2 133 255 381 4.23e-15 73.2
Msa0000590 AT2G23070.1 31.655 139 82 4 2 133 285 417 8.13e-15 72.0
Msa0000590 AT3G14720.1 39.259 135 73 3 2 134 190 317 3.15e-14 70.5
Msa0000590 AT3G14720.2 39.259 135 73 3 2 134 190 317 1.14e-13 68.6
Msa0000590 AT3G14720.3 39.259 135 73 3 2 134 190 317 1.14e-13 68.6
Msa0000590 AT5G35980.1 55.556 63 22 2 2 59 280 341 3.57e-13 67.4
Msa0000590 AT5G35980.3 55.556 63 22 2 2 59 245 306 3.69e-13 67.4
Msa0000590 AT5G35980.2 55.556 63 22 2 2 59 280 341 4.74e-13 67.0
Msa0000590 AT1G53510.1 38.235 136 73 4 2 134 190 317 5.10e-13 67.0
Msa0000590 AT2G42880.1 36.567 134 78 2 2 134 190 317 1.33e-12 65.9
Msa0000590 AT2G42880.2 36.567 134 78 2 2 134 190 317 1.63e-12 65.5
Msa0000590 AT1G01560.4 52.000 50 24 0 2 51 201 250 7.36e-12 62.8
Msa0000590 AT1G01560.1 52.000 50 24 0 2 51 201 250 7.36e-12 62.8
Msa0000590 AT3G18040.2 37.778 135 73 6 2 133 100 226 8.67e-12 63.2
Msa0000590 AT3G18040.1 37.778 135 73 6 2 133 188 314 1.30e-11 62.8
Msa0000590 AT3G18040.5 37.778 135 73 6 2 133 183 309 1.42e-11 62.8
Msa0000590 AT1G73460.2 34.586 133 79 5 8 133 1029 1160 1.49e-11 62.8
Msa0000590 AT1G73460.1 34.586 133 79 5 8 133 1029 1160 1.49e-11 62.8
Msa0000590 AT3G18040.4 37.778 135 73 6 2 133 297 423 2.12e-11 62.4
Msa0000590 AT3G18040.3 37.778 135 73 6 2 133 297 423 2.79e-11 62.0
Msa0000590 AT1G71530.4 55.319 47 21 0 2 48 308 354 3.96e-11 61.2
Msa0000590 AT1G18150.3 35.821 134 77 3 2 133 269 395 4.15e-11 61.2
Msa0000590 AT1G18150.2 35.821 134 77 3 2 133 269 395 4.15e-11 61.2
Msa0000590 AT1G18150.1 35.821 134 77 3 2 133 269 395 4.15e-11 61.2
Msa0000590 AT1G73450.1 33.083 133 81 4 8 133 1012 1143 4.31e-11 61.6

Find 314 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCAGTTCTTTCTGATTC+TGG 0.124847 1_1:+1737903 Msa0000590:CDS
CAGGGCACCTGAACTTCTTC+TGG 0.143737 1_1:+1737298 Msa0000590:CDS
TTGGATCATTCTTTGTGTTT+TGG 0.151918 1_1:+1735049 Msa0000590:five_prime_UTR
TTCACTTCACTTTGGCTAAA+TGG 0.179214 1_1:-1736619 None:intergenic
TCTTGTAAATTACTCAATTT+TGG 0.187271 1_1:-1740437 None:intergenic
AATTTAGATAGATAGATTTA+TGG 0.197180 1_1:+1735163 Msa0000590:five_prime_UTR
TCCTATACTTTAGGATATTC+TGG 0.207969 1_1:-1739863 None:intergenic
TGTCTAATACTTTACCATTA+TGG 0.210360 1_1:+1740527 Msa0000590:three_prime_UTR
AACATAAGAACCGGGAATTT+TGG 0.226682 1_1:-1740462 None:intergenic
GAGACTAACTCCTGAGGTTT+TGG 0.229977 1_1:+1735994 Msa0000590:five_prime_UTR
CCGCCTTGAAACTTCCAAAT+TGG 0.230918 1_1:-1735237 None:intergenic
AAAGAAGTTGCTGTTATTAA+TGG 0.234139 1_1:+1735362 Msa0000590:five_prime_UTR
TTACCACGAAAACGAGTTTA+AGG 0.247286 1_1:+1735205 Msa0000590:five_prime_UTR
GCTTCCCGCTGACTTCTCTT+AGG 0.250993 1_1:+1736452 Msa0000590:five_prime_UTR
TGGTTGTCTATATGTTTATC+AGG 0.254665 1_1:+1737279 Msa0000590:CDS
TTCCCCGGTCTTCTTATCTT+TGG 0.256017 1_1:-1736386 None:intergenic
AGGATTACCGATGGTGAAAT+TGG 0.269117 1_1:-1734890 None:intergenic
TGAGGTTGAGCTGGAGGTTC+AGG 0.276655 1_1:-1736268 None:intergenic
GGGTGAGGCAGAAGGATGTT+AGG 0.280799 1_1:+1735336 Msa0000590:five_prime_UTR
GGAGTTGCAGCAGGGTGAAT+TGG 0.287216 1_1:+1738375 Msa0000590:CDS
AACACTACCACTCATTTAAA+TGG 0.293995 1_1:-1741503 None:intergenic
ATGACAACTGGGTGCTTCAT+AGG 0.294492 1_1:+1736683 Msa0000590:five_prime_UTR
CCTGGCCATATTGTTTCATT+TGG 0.310614 1_1:-1737601 None:intergenic
TAATTGAACTCCTATACTTT+AGG 0.312818 1_1:-1739872 None:intergenic
TTTGGTTTGGCTCGTCAATA+TGG 0.316228 1_1:+1736763 Msa0000590:five_prime_UTR
TTTGTTGCGATTGAGGGATT+AGG 0.319112 1_1:+1735120 Msa0000590:five_prime_UTR
GAGATTCCAGAGATAGGATT+AGG 0.320055 1_1:+1735315 Msa0000590:five_prime_UTR
TGGCATAACCTTCTGAAATT+AGG 0.320485 1_1:+1738688 Msa0000590:three_prime_UTR
GAACATACGGTGTTGTATAT+AGG 0.321680 1_1:+1736362 Msa0000590:five_prime_UTR
CTCACCTGGTGGTTACTCTT+TGG 0.322663 1_1:+1736806 Msa0000590:five_prime_UTR
AGCGACAGAACAGACGATTT+TGG 0.323035 1_1:-1735689 None:intergenic
AAGAACGGTCAACATGCTTC+AGG 0.324931 1_1:+1736291 Msa0000590:five_prime_UTR
ACATGATCTTAAAGGATTAA+TGG 0.326337 1_1:+1736582 Msa0000590:five_prime_UTR
AGCCCCAATGATTCTAAAAT+AGG 0.327458 1_1:+1736043 Msa0000590:five_prime_UTR
TTGTTGCGATTGAGGGATTA+GGG 0.329639 1_1:+1735121 Msa0000590:five_prime_UTR
TAAGGATCACGAGTCCAATT+TGG 0.332451 1_1:+1735223 Msa0000590:five_prime_UTR
ATTTGAGTATTAAAGCAATA+TGG 0.333157 1_1:+1738799 Msa0000590:three_prime_UTR
GCTAATTAACAATCTAAGTT+GGG 0.334200 1_1:+1741556 Msa0000590:three_prime_UTR
ATTAGCAAAATACACCTATA+AGG 0.335731 1_1:-1741539 None:intergenic
GTTACTGTTCCTTCTCCTTC+CGG 0.343258 1_1:+1735794 Msa0000590:five_prime_UTR
AGAGATGGTGAACCAACATT+TGG 0.348467 1_1:-1741477 None:intergenic
ATGATGAGGAAATGCCTAAA+AGG 0.353294 1_1:+1735966 Msa0000590:five_prime_UTR
ATCAGAAAAGGATGACTATA+TGG 0.359590 1_1:+1736162 Msa0000590:five_prime_UTR
TGCTAATTAACAATCTAAGT+TGG 0.360151 1_1:+1741555 Msa0000590:three_prime_UTR
TGAGTTGCCCACAGCATCTA+AGG 0.362124 1_1:+1735772 Msa0000590:five_prime_UTR
TTCCGTCGCTGCTCCTCTAA+AGG 0.364469 1_1:-1738352 None:intergenic
TCTTCCAGCCGGAGTGATTC+CGG 0.368458 1_1:+1735398 Msa0000590:five_prime_UTR
TACATGGAACATGATCTTAA+AGG 0.371667 1_1:+1736574 Msa0000590:five_prime_UTR
TGAAGGGGTCATCGAAGGTT+AGG 0.372654 1_1:+1735621 Msa0000590:five_prime_UTR
GCACTCCAAATGAAACAATA+TGG 0.372793 1_1:+1737596 Msa0000590:CDS
AGCATTAAAGAAGGTCAAAA+TGG 0.373419 1_1:+1736414 Msa0000590:five_prime_UTR
AAGTGCGTTCTGTCAGGAAC+AGG 0.374379 1_1:+1735735 Msa0000590:five_prime_UTR
CTGTTATTAATGGTAATTAT+CGG 0.374727 1_1:+1735372 Msa0000590:five_prime_UTR
GAGTTGCAGCAGGGTGAATT+GGG 0.376181 1_1:+1738376 Msa0000590:CDS
TCCTTGACATCAACTATGTA+TGG 0.382483 1_1:-1736505 None:intergenic
CGCTGCTCCTCTAAAGGGTC+TGG 0.387442 1_1:-1738346 None:intergenic
CTCTCACTGGAAAGCTCACC+AGG 0.387536 1_1:-1735482 None:intergenic
TTCTTCCGAATCAGATGATC+TGG 0.390201 1_1:-1736086 None:intergenic
GGTGCTATTGAATCTGAATC+TGG 0.390808 1_1:+1735515 Msa0000590:five_prime_UTR
AGGCATGAATTCTTTGCTCT+TGG 0.391274 1_1:-1738104 None:intergenic
AACATACGGTGTTGTATATA+GGG 0.397613 1_1:+1736363 Msa0000590:five_prime_UTR
CAAGAGTCCAGACCCTTTAG+AGG 0.399262 1_1:+1738339 Msa0000590:CDS
TGAAGTATCTTCATGACAAC+TGG 0.400196 1_1:+1736671 Msa0000590:five_prime_UTR
TTCGCCCATTGTGTGGGATC+AGG 0.402507 1_1:+1735586 Msa0000590:five_prime_UTR
TCATTACCCCATGTCTGTTT+CGG 0.402889 1_1:-1735833 None:intergenic
AATCTGAAGATGACATTGAT+AGG 0.405819 1_1:+1736236 Msa0000590:five_prime_UTR
GGAACATAATCCTCACCTTC+TGG 0.408603 1_1:-1735872 None:intergenic
AGTATGATCCGGTTAGGAAT+GGG 0.409347 1_1:+1735279 Msa0000590:five_prime_UTR
GGTGAGGCAGAAGGATGTTA+GGG 0.410047 1_1:+1735337 Msa0000590:five_prime_UTR
GTAACCACCAGGTGAGTATA+TGG 0.411054 1_1:-1736799 None:intergenic
GTGAACCAACATTTGGGTTA+AGG 0.412381 1_1:-1741470 None:intergenic
TTACAAGACACCAAAATTCC+CGG 0.412696 1_1:+1740452 Msa0000590:three_prime_UTR
AATCTGAATCTGGGGTGAAC+AGG 0.417384 1_1:+1735525 Msa0000590:five_prime_UTR
TTATAATATGCTGTCAAGTC+TGG 0.418077 1_1:+1740570 Msa0000590:three_prime_UTR
ACCGTTCTTTGAGGTTGAGC+TGG 0.419434 1_1:-1736277 None:intergenic
TCTAAGGAACCGTTGTTCAA+TGG 0.419835 1_1:+1737386 Msa0000590:CDS
CAGCCTAGTTGTCGCAAGTT+CGG 0.420938 1_1:+1740953 Msa0000590:three_prime_UTR
TCCGTCGCTGCTCCTCTAAA+GGG 0.421185 1_1:-1738351 None:intergenic
AATGGCTGAGCTATTGTCTA+AGG 0.431090 1_1:+1737370 Msa0000590:CDS
AGATTCCAGAGATAGGATTA+GGG 0.432389 1_1:+1735316 Msa0000590:five_prime_UTR
TGTCGCAAGTTCGGAATAGT+TGG 0.432390 1_1:+1740962 Msa0000590:three_prime_UTR
AGGGCACCTGAACTTCTTCT+GGG 0.435368 1_1:+1737299 Msa0000590:CDS
TAGAATGTTCATTGAGACAT+AGG 0.438901 1_1:-1738438 None:intergenic
CTGTCAGGAACAGGGAAACT+AGG 0.440288 1_1:+1735744 Msa0000590:five_prime_UTR
GGCATGAATTCTTTGCTCTT+GGG 0.442678 1_1:-1738103 None:intergenic
GAGATGGTGAACCAACATTT+GGG 0.442909 1_1:-1741476 None:intergenic
TCCGGTAGCAGTGGCAGCCT+TGG 0.443004 1_1:+1735416 Msa0000590:five_prime_UTR
GGTAAAGTATTAGACACAAC+TGG 0.443047 1_1:-1740520 None:intergenic
CACCCCTGTTATTTAAAAGC+AGG 0.443688 1_1:-1736723 None:intergenic
CGAAAGAGTATGATCCGGTT+AGG 0.444319 1_1:+1735273 Msa0000590:five_prime_UTR
ACATTTAACAATCTCCATAA+TGG 0.448591 1_1:-1740541 None:intergenic
AAGAGAAGAGAATAACGAAA+AGG 0.452292 1_1:-1734766 None:intergenic
GCGACGGAAGGAGTTGCAGC+AGG 0.452410 1_1:+1738366 Msa0000590:CDS
AATCCAGAATCAGAAAGAAC+TGG 0.456787 1_1:-1737906 None:intergenic
CTTCCCGCTGACTTCTCTTA+GGG 0.457650 1_1:+1736453 Msa0000590:five_prime_UTR
AATCTGGGGTGAACAGGTCT+CGG 0.457729 1_1:+1735531 Msa0000590:five_prime_UTR
GAAAGTCAGAACATAAGAAC+CGG 0.457798 1_1:-1740471 None:intergenic
AGTCCAATTTGGAAGTTTCA+AGG 0.458707 1_1:+1735234 Msa0000590:five_prime_UTR
GTCTCGGTCTCCTCCTCCGC+AGG 0.461875 1_1:+1735547 Msa0000590:five_prime_UTR
AGAATCTCACCCTCATCAAC+AGG 0.462601 1_1:-1735941 None:intergenic
CCTCACCCTAATCCTATCTC+TGG 0.463374 1_1:-1735321 None:intergenic
GGGGCAGAGATTCCAGAGAT+AGG 0.464958 1_1:+1735309 Msa0000590:five_prime_UTR
GTAGCAAGCGTGCACAAGTC+AGG 0.465821 1_1:-1740408 None:intergenic
TTTCATGGTTATGGAATACA+TGG 0.467061 1_1:+1736558 Msa0000590:five_prime_UTR
ACAGCAAAGCTATATATTAC+CGG 0.469430 1_1:-1740329 None:intergenic
TCTTATGTTCTGACTTTCGA+TGG 0.471205 1_1:+1740476 Msa0000590:three_prime_UTR
AAGTTCAAGTGCGTTCTGTC+AGG 0.472521 1_1:+1735729 Msa0000590:five_prime_UTR
GTGGTCTCTTGGTTGTATAA+TGG 0.472632 1_1:+1737352 Msa0000590:CDS
ATAGATAGATTTATGGCTGC+TGG 0.474893 1_1:+1735170 Msa0000590:five_prime_UTR
TCTCTTCTCTTTCTCCTCGA+AGG 0.476245 1_1:+1734778 Msa0000590:five_prime_UTR
GGAGCGGAATTATCGTAATT+CGG 0.479334 1_1:+1734719 Msa0000590:five_prime_UTR
AATTCTTTGCTCTTGGGAAG+AGG 0.479673 1_1:-1738097 None:intergenic
TTGGTTTGGCTCGTCAATAT+GGG 0.480877 1_1:+1736764 Msa0000590:five_prime_UTR
GCTATTGATATGTGGTCTCT+TGG 0.481064 1_1:+1737341 Msa0000590:CDS
ACCAAGGCTGCCACTGCTAC+CGG 0.481499 1_1:-1735417 None:intergenic
GAAATATATCTTCTTCAAGA+TGG 0.482592 1_1:+1735900 Msa0000590:five_prime_UTR
TAGGATTAGGGTGAGGCAGA+AGG 0.482821 1_1:+1735328 Msa0000590:five_prime_UTR
GGGCCTTCTGTGCATTTCGT+TGG 0.485009 1_1:+1738904 Msa0000590:three_prime_UTR
ACAGACATGGGGTAATGATC+AGG 0.485568 1_1:+1735838 Msa0000590:five_prime_UTR
TTAAGCATTTCACTTCACTT+TGG 0.486544 1_1:-1736627 None:intergenic
AGGTTAACATTCTTCGTGCT+TGG 0.489719 1_1:+1738621 Msa0000590:three_prime_UTR
AAAAGGAGAGGGGATTGAAA+AGG 0.492100 1_1:-1734910 None:intergenic
TGACAACTGGGTGCTTCATA+GGG 0.493151 1_1:+1736684 Msa0000590:five_prime_UTR
GGTGAAATTGGATAATGAAA+GGG 0.493907 1_1:-1734878 None:intergenic
GTATCAAAGCAAGCAGGTTG+AGG 0.497241 1_1:+1739834 Msa0000590:intron
TTCTGTATCTGAGTGACTAC+TGG 0.498468 1_1:-1736215 None:intergenic
CCAGGCTTCTCAAAATTACC+TGG 0.498528 1_1:+1737619 Msa0000590:CDS
TCCTGGTATTGAATCAGAAA+AGG 0.498860 1_1:+1736150 Msa0000590:five_prime_UTR
CAATTTGGAAGTTTCAAGGC+GGG 0.499417 1_1:+1735238 Msa0000590:five_prime_UTR
TGGTGGTTACTCTTTGGTAC+AGG 0.500836 1_1:+1736812 Msa0000590:five_prime_UTR
CGGTTGGTGTGAAGTGGAAG+AGG 0.502100 1_1:+1738883 Msa0000590:three_prime_UTR
CTGTCCTGAGCATGTTGAGC+AGG 0.505934 1_1:-1738133 None:intergenic
TGGTGAAATTGGATAATGAA+AGG 0.506222 1_1:-1734879 None:intergenic
CCTAACTTATGACCCTGAAA+AGG 0.508625 1_1:+1737947 Msa0000590:CDS
AATTCACACAGCTGCGAGAT+GGG 0.508843 1_1:+1741028 Msa0000590:three_prime_UTR
TCATCCTGATCCCACACAAT+GGG 0.508964 1_1:-1735590 None:intergenic
GAAGAAGATATATTTCGAGT+TGG 0.509356 1_1:-1735893 None:intergenic
AATCATTAGGGTGGAATGTG+TGG 0.509657 1_1:+1741421 Msa0000590:intron
GAGTATGATCCGGTTAGGAA+TGG 0.510420 1_1:+1735278 Msa0000590:five_prime_UTR
GTGGCAGCCTTGGTCCTCGC+CGG 0.511363 1_1:+1735426 Msa0000590:five_prime_UTR
TCATTATCCAATTTCACCAT+CGG 0.511391 1_1:+1734883 Msa0000590:five_prime_UTR
CAGCAGGGTGAATTGGGGAC+TGG 0.511499 1_1:+1738382 Msa0000590:CDS
TCGAGCCAGATCATCTGATT+CGG 0.512465 1_1:+1736081 Msa0000590:five_prime_UTR
AACAGTAACCTTAGATGCTG+TGG 0.512876 1_1:-1735780 None:intergenic
TGCGTAGGGTAAAACCTTAT+AGG 0.513257 1_1:+1741525 Msa0000590:three_prime_UTR
CTATTGTATGCAGCGGATCA+CGG 0.514408 1_1:+1738036 Msa0000590:intron
GGTGAGCTTTCCAGTGAGAG+TGG 0.514806 1_1:+1735485 Msa0000590:five_prime_UTR
ACTTCACACCTTCTAAAAGC+TGG 0.514934 1_1:-1736654 None:intergenic
TAAAGTAGGAAGGTAATGAT+TGG 0.516217 1_1:-1734960 None:intergenic
ACCATCAGACCCACTCTCAC+TGG 0.517159 1_1:-1735495 None:intergenic
AAGTTCGGAATAGTTGGGTC+GGG 0.517267 1_1:+1740968 Msa0000590:three_prime_UTR
GCATGTTGAGCAGGAAATGT+AGG 0.519216 1_1:-1738124 None:intergenic
AGCATGTTGACCGTTCTTTG+AGG 0.520209 1_1:-1736286 None:intergenic
AATGAGTGGTAGTGTTGCGT+AGG 0.520706 1_1:+1741510 Msa0000590:three_prime_UTR
CTCTTTGCCATTTAAATGAG+TGG 0.521284 1_1:+1741496 Msa0000590:three_prime_UTR
TTTATGGCTGCTGGCAGACA+TGG 0.522722 1_1:+1735179 Msa0000590:five_prime_UTR
GAAGGGGTCATCGAAGGTTA+GGG 0.524258 1_1:+1735622 Msa0000590:five_prime_UTR
TCTAGTGGCGATGGACATCC+TGG 0.524669 1_1:+1736133 Msa0000590:five_prime_UTR
TAAATGCTACAAATGTTACA+TGG 0.525334 1_1:+1740382 Msa0000590:three_prime_UTR
CGGTGACAAGGACTGAGATC+CGG 0.526767 1_1:-1735813 None:intergenic
GTGCTATTGAATCTGAATCT+GGG 0.527339 1_1:+1735516 Msa0000590:five_prime_UTR
CTAATTAACAATCTAAGTTG+GGG 0.527630 1_1:+1741557 Msa0000590:three_prime_UTR
CTTTAATGCTACAACTTCCC+CGG 0.528008 1_1:-1736401 None:intergenic
TCTTCTTCAAGATGGGCAGC+TGG 0.528302 1_1:+1735908 Msa0000590:five_prime_UTR
GTGGGTATCACCTACACAAT+CGG 0.529087 1_1:+1741440 Msa0000590:three_prime_UTR
ATAAGAGATCATTTACCTGA+TGG 0.530004 1_1:+1737259 Msa0000590:exon
ACCAGAATATCCTAAAGTAT+AGG 0.531007 1_1:+1739862 Msa0000590:three_prime_UTR
AAGAGCAGCCACTGGTGTTG+TGG 0.531290 1_1:-1735648 None:intergenic
CTTATGTTCTGACTTTCGAT+GGG 0.531311 1_1:+1740477 Msa0000590:three_prime_UTR
TCCAGTGAGAGTGGGTCTGA+TGG 0.531386 1_1:+1735494 Msa0000590:five_prime_UTR
ACTTGTGCACGCTTGCTACA+AGG 0.531875 1_1:+1740412 Msa0000590:three_prime_UTR
TTTCCTGCCACATCATTCAC+TGG 0.532432 1_1:+1737879 Msa0000590:CDS
GTCGCAAGTTCGGAATAGTT+GGG 0.533326 1_1:+1740963 Msa0000590:three_prime_UTR
CTGCTCAACATGCTCAGGAC+AGG 0.534151 1_1:+1738134 Msa0000590:CDS
AGAGGAGGAAGAGCAGCCAC+TGG 0.535256 1_1:-1735656 None:intergenic
CAAGTTCGGAATAGTTGGGT+CGG 0.536359 1_1:+1740967 Msa0000590:three_prime_UTR
AAGTCAACCGATAGAGAGCC+TGG 0.537292 1_1:+1735464 Msa0000590:five_prime_UTR
TTTGGCAGCTGAGGCAGAGG+AGG 0.537588 1_1:-1735671 None:intergenic
CAGGGTGAATTGGGGACTGG+TGG 0.537620 1_1:+1738385 Msa0000590:CDS
TAATTCACACAGCTGCGAGA+TGG 0.538346 1_1:+1741027 Msa0000590:three_prime_UTR
ACAAAATTGACCTTGACTCC+AGG 0.538497 1_1:-1737637 None:intergenic
AGACTTAACAAGATAGATGA+AGG 0.541321 1_1:+1736340 Msa0000590:five_prime_UTR
GAAGAGAATAACGAAAAGGA+AGG 0.541347 1_1:-1734762 None:intergenic
GAAATTGTTCACAGTGAACA+TGG 0.541996 1_1:-1740359 None:intergenic
ATTTCCTGCTCAACATGCTC+AGG 0.542065 1_1:+1738129 Msa0000590:CDS
TGGAAATTATTATGCATGAA+AGG 0.543264 1_1:+1738938 Msa0000590:three_prime_UTR
AAGCCGCTCTGAATCATGAA+TGG 0.543290 1_1:+1738062 Msa0000590:CDS
AAATATATCTTCTTCAAGAT+GGG 0.544572 1_1:+1735901 Msa0000590:five_prime_UTR
CCGCGACACTTTGCTGCTCA+AGG 0.547605 1_1:+1738663 Msa0000590:three_prime_UTR
GTGAGCTTTCCAGTGAGAGT+GGG 0.547648 1_1:+1735486 Msa0000590:five_prime_UTR
ATTCCGAACTTGCGACAACT+AGG 0.548117 1_1:-1740956 None:intergenic
ACCCTTTAGAGGAGCAGCGA+CGG 0.548664 1_1:+1738350 Msa0000590:CDS
AAAGAGAAATCGAACCTTCG+AGG 0.549351 1_1:-1734792 None:intergenic
ACTCTAGTCTCCAAAACCTC+AGG 0.549774 1_1:-1736004 None:intergenic
GCTACCGGAATCACTCCGGC+TGG 0.551956 1_1:-1735402 None:intergenic
ATGTAAAGCATCCACACTGA+TGG 0.552348 1_1:+1741062 Msa0000590:three_prime_UTR
AGCTGAGCAGCCAGAAGGTG+AGG 0.552814 1_1:+1735862 Msa0000590:five_prime_UTR
CCCAATGATTCTAAAATAGG+TGG 0.552856 1_1:+1736046 Msa0000590:five_prime_UTR
AATTGACGCGGTGCTAAAGT+AGG 0.552921 1_1:-1734974 None:intergenic
TCTTGGGAAGAGGAACTTCA+CGG 0.554885 1_1:-1738087 None:intergenic
CCTTGTCACCGAAACAGACA+TGG 0.557092 1_1:+1735825 Msa0000590:five_prime_UTR
CCAAATGAAACAATATGGCC+AGG 0.557752 1_1:+1737601 Msa0000590:CDS
TGTCAGGAACAGGGAAACTA+GGG 0.558367 1_1:+1735745 Msa0000590:five_prime_UTR
ATGATGTTAACAGGCGGATG+CGG 0.558530 1_1:+1738308 Msa0000590:intron
ATCATTAGGGTGGAATGTGT+GGG 0.558899 1_1:+1741422 Msa0000590:intron
AGGGCCAAAGATAAGAAGAC+CGG 0.559159 1_1:+1736382 Msa0000590:five_prime_UTR
TATGATCCGGTTAGGAATGG+GGG 0.559192 1_1:+1735281 Msa0000590:five_prime_UTR
ATACTCACCTTTCACCATTG+TGG 0.559862 1_1:-1740616 None:intergenic
GGGAGAACGTCTAGTGGCGA+TGG 0.560177 1_1:+1736124 Msa0000590:five_prime_UTR
CTCAAAATTACCTGGAGTCA+AGG 0.560386 1_1:+1737627 Msa0000590:CDS
GCACTCCTTAACCCAAATGT+TGG 0.561055 1_1:+1741465 Msa0000590:three_prime_UTR
AGGAAATGCCTAAAAGGAAG+AGG 0.561761 1_1:+1735972 Msa0000590:five_prime_UTR
GGTTGTCTATATGTTTATCA+GGG 0.562728 1_1:+1737280 Msa0000590:CDS
GTTCTTTGAGGTTGAGCTGG+AGG 0.563263 1_1:-1736274 None:intergenic
AACCACACCGGCGAGGACCA+AGG 0.564324 1_1:-1735433 None:intergenic
AAATTCGAAAGAGTATGATC+CGG 0.565209 1_1:+1735268 Msa0000590:five_prime_UTR
GTCAAGTCTGGTCGTAAAGT+AGG 0.565514 1_1:+1740582 Msa0000590:three_prime_UTR
GATGTCAAGGAAGTAGTGGT+TGG 0.565981 1_1:+1736517 Msa0000590:five_prime_UTR
CGCCACTAGACGTTCTCCCA+TGG 0.567512 1_1:-1736120 None:intergenic
GGAAGTTGTAGCATTAAAGA+AGG 0.567586 1_1:+1736405 Msa0000590:five_prime_UTR
TAAACATATAGACAACCATC+AGG 0.569220 1_1:-1737274 None:intergenic
AACTATGTATGGGTGGTGAA+AGG 0.569239 1_1:-1736494 None:intergenic
CCCATACATAGTTGATGTCA+AGG 0.569317 1_1:+1736504 Msa0000590:five_prime_UTR
CCATGTCTGTTTCGGTGACA+AGG 0.570794 1_1:-1735825 None:intergenic
GACTGAGATCCGGAAGGAGA+AGG 0.570967 1_1:-1735803 None:intergenic
GGTCTCCTCCTCCGCAGGAG+AGG 0.571087 1_1:+1735552 Msa0000590:five_prime_UTR
ACTGACTTCCTAATTTCAGA+AGG 0.571475 1_1:-1738696 None:intergenic
TCAGGATGACAAGGAAGTGA+AGG 0.573143 1_1:+1735604 Msa0000590:five_prime_UTR
AGGTGAGTATATGGTTTCAA+AGG 0.575895 1_1:-1736790 None:intergenic
AGAACGGTCAACATGCTTCA+GGG 0.577075 1_1:+1736292 Msa0000590:five_prime_UTR
CCTTGACATCAACTATGTAT+GGG 0.580868 1_1:-1736504 None:intergenic
ACACTTTGCTGCTCAAGGTG+TGG 0.581517 1_1:+1738668 Msa0000590:three_prime_UTR
TTTAGAGGAGCAGCGACGGA+AGG 0.581722 1_1:+1738354 Msa0000590:CDS
TCAAAGCAAGCAGGTTGAGG+AGG 0.581731 1_1:+1739837 Msa0000590:three_prime_UTR
AAGCTCACCAGGCTCTCTAT+CGG 0.583676 1_1:-1735471 None:intergenic
AAAGAAGGTCAAAATGGAGA+AGG 0.584449 1_1:+1736420 Msa0000590:five_prime_UTR
TTTCCCTAAGAGAAGTCAGC+GGG 0.585005 1_1:-1736456 None:intergenic
CAGGAAGCTGAGCAGCCAGA+AGG 0.586301 1_1:+1735857 Msa0000590:five_prime_UTR
CGGAGTGATTCCGGTAGCAG+TGG 0.587437 1_1:+1735407 Msa0000590:five_prime_UTR
GTATGATCCGGTTAGGAATG+GGG 0.587540 1_1:+1735280 Msa0000590:five_prime_UTR
ACTCAACAGCTATTGATATG+TGG 0.588009 1_1:+1737333 Msa0000590:CDS
GTCATCCTGATCCCACACAA+TGG 0.590184 1_1:-1735591 None:intergenic
GGGCCAAAGATAAGAAGACC+GGG 0.592366 1_1:+1736383 Msa0000590:five_prime_UTR
AAGATAGATGAAGGAACATA+CGG 0.592442 1_1:+1736349 Msa0000590:five_prime_UTR
CAGGATGACAAGGAAGTGAA+GGG 0.592456 1_1:+1735605 Msa0000590:five_prime_UTR
TAACCATGAAAATACTGTCA+AGG 0.592600 1_1:-1736546 None:intergenic
CATATTGTGTATGCAAGAGA+CGG 0.592940 1_1:+1738863 Msa0000590:three_prime_UTR
AGTTGATGTCAAGGAAGTAG+TGG 0.596814 1_1:+1736513 Msa0000590:five_prime_UTR
TCCAGCTCAACCTCAAAGAA+CGG 0.599078 1_1:+1736276 Msa0000590:five_prime_UTR
ACAGTAACCTTAGATGCTGT+GGG 0.602156 1_1:-1735779 None:intergenic
AGGTGAGGATATGTACTGAA+CGG 0.602632 1_1:+1738490 Msa0000590:three_prime_UTR
GGGCACCTGAACTTCTTCTG+GGG 0.603629 1_1:+1737300 Msa0000590:CDS
AGCCTTGGTCCTCGCCGGTG+TGG 0.605000 1_1:+1735431 Msa0000590:five_prime_UTR
ATGAGTGGTAGTGTTGCGTA+GGG 0.606959 1_1:+1741511 Msa0000590:three_prime_UTR
AGATAACTCTCCTGTTGATG+AGG 0.609012 1_1:+1735931 Msa0000590:five_prime_UTR
ATTATCGGTCATCTTCCAGC+CGG 0.610184 1_1:+1735387 Msa0000590:five_prime_UTR
TCTCCAACGAAATGCACAGA+AGG 0.610530 1_1:-1738907 None:intergenic
GGAAGTGAAGGGGTCATCGA+AGG 0.612211 1_1:+1735616 Msa0000590:five_prime_UTR
AAGAAAGAAGTGTTAACCAT+GGG 0.612803 1_1:+1736104 Msa0000590:five_prime_UTR
CACTGCTACCGGAATCACTC+CGG 0.615938 1_1:-1735406 None:intergenic
TCATTTAAATGGCAAAGAGA+TGG 0.618779 1_1:-1741492 None:intergenic
AACCATGGGAGAACGTCTAG+TGG 0.620965 1_1:+1736118 Msa0000590:five_prime_UTR
AATTTGGAAGTTTCAAGGCG+GGG 0.624061 1_1:+1735239 Msa0000590:five_prime_UTR
GATCCAGTGAATGATGTGGC+AGG 0.627509 1_1:-1737882 None:intergenic
CCAGAGATAGGATTAGGGTG+AGG 0.627823 1_1:+1735321 Msa0000590:five_prime_UTR
GATAACTCTCCTGTTGATGA+GGG 0.631307 1_1:+1735932 Msa0000590:five_prime_UTR
TTTCGTTGGAGAAAATGACA+TGG 0.631631 1_1:+1738918 Msa0000590:three_prime_UTR
TATTAGACACAACTGGAAGG+TGG 0.632428 1_1:-1740513 None:intergenic
GGCACCTGAACTTCTTCTGG+GGG 0.633122 1_1:+1737301 Msa0000590:CDS
AGGAGTGCCTCCGATTGTGT+AGG 0.633448 1_1:-1741450 None:intergenic
ACTGCAGTATCAAAGCAAGC+AGG 0.633608 1_1:+1739828 Msa0000590:intron
GGGTGAGATTCTCAATGATG+AGG 0.634911 1_1:+1735952 Msa0000590:five_prime_UTR
GAAGAAAGAAGTGTTAACCA+TGG 0.634994 1_1:+1736103 Msa0000590:five_prime_UTR
GACGCGGTGCTAAAGTAGGA+AGG 0.635680 1_1:-1734970 None:intergenic
CTTGTCACCGAAACAGACAT+GGG 0.637212 1_1:+1735826 Msa0000590:five_prime_UTR
TATATGGACATTGATGTTCG+AGG 0.639759 1_1:+1736178 Msa0000590:five_prime_UTR
CGACGGAAGGAGTTGCAGCA+GGG 0.640830 1_1:+1738367 Msa0000590:CDS
TGTACCAAAGAGTAACCACC+AGG 0.641674 1_1:-1736810 None:intergenic
TTTGAAACCATATACTCACC+TGG 0.644910 1_1:+1736792 Msa0000590:five_prime_UTR
GGTTGGTGTGAAGTGGAAGA+GGG 0.650105 1_1:+1738884 Msa0000590:three_prime_UTR
AGTGCGTTCTGTCAGGAACA+GGG 0.650517 1_1:+1735736 Msa0000590:five_prime_UTR
AGTTGCAGCAGGGTGAATTG+GGG 0.650975 1_1:+1738377 Msa0000590:CDS
TTGTCCTTCAGACTCTCTAG+AGG 0.652122 1_1:+1739896 Msa0000590:three_prime_UTR
GGATTGAAAAGGATTACCGA+TGG 0.654480 1_1:-1734899 None:intergenic
TGTGTGGGATCAGGATGACA+AGG 0.655856 1_1:+1735595 Msa0000590:five_prime_UTR
TGCTATTGAATCTGAATCTG+GGG 0.656498 1_1:+1735517 Msa0000590:five_prime_UTR
ATGTTTGCATTGATGAGGTG+AGG 0.656911 1_1:+1738475 Msa0000590:three_prime_UTR
AAGTATTAGACACAACTGGA+AGG 0.657610 1_1:-1740516 None:intergenic
CCAATTTGGAAGTTTCAAGG+CGG 0.658089 1_1:+1735237 Msa0000590:five_prime_UTR
AAAGTCAGAACATAAGAACC+GGG 0.658705 1_1:-1740470 None:intergenic
ATTGTGTCCACAATGGTGAA+AGG 0.661461 1_1:+1740609 Msa0000590:three_prime_UTR
ACAGAATGTTTGCATTGATG+AGG 0.662027 1_1:+1738470 Msa0000590:three_prime_UTR
AAGAGACGGTTGGTGTGAAG+TGG 0.663394 1_1:+1738877 Msa0000590:three_prime_UTR
GGAATTCGATCAACTTGACA+AGG 0.666870 1_1:+1737415 Msa0000590:CDS
TAGGGTCTCCACAACACCAG+TGG 0.669653 1_1:+1735640 Msa0000590:five_prime_UTR
GACAAGGACTGAGATCCGGA+AGG 0.673128 1_1:-1735809 None:intergenic
AGGTCTTATTGTGTCCACAA+TGG 0.675628 1_1:+1740602 Msa0000590:three_prime_UTR
CCTTGAGCAGCAAAGTGTCG+CGG 0.676899 1_1:-1738663 None:intergenic
GAAACCATATACTCACCTGG+TGG 0.687703 1_1:+1736795 Msa0000590:five_prime_UTR
ATTTCCCTAAGAGAAGTCAG+CGG 0.691703 1_1:-1736457 None:intergenic
ATCAATGCAAACATTCTGTG+TGG 0.694046 1_1:-1738466 None:intergenic
AGGATGACAAGGAAGTGAAG+GGG 0.695181 1_1:+1735606 Msa0000590:five_prime_UTR
ATGATCCGGTTAGGAATGGG+GGG 0.695928 1_1:+1735282 Msa0000590:five_prime_UTR
GAAGAGGAGACTAACTCCTG+AGG 0.695997 1_1:+1735988 Msa0000590:five_prime_UTR
TTGTGTATGCAAGAGACGGT+TGG 0.699329 1_1:+1738867 Msa0000590:three_prime_UTR
TGTACCTCTAGAGAGTCTGA+AGG 0.702457 1_1:-1739900 None:intergenic
GAAGTATCTTCATGACAACT+GGG 0.705118 1_1:+1736672 Msa0000590:five_prime_UTR
GGTATCACCTACACAATCGG+AGG 0.715296 1_1:+1741443 Msa0000590:three_prime_UTR
TGACATCAACTATGTATGGG+TGG 0.715859 1_1:-1736501 None:intergenic
TGGAGATCCAGTGAATGATG+TGG 0.720894 1_1:-1737886 None:intergenic
TACTGTATAGTCCATCAGTG+TGG 0.723197 1_1:-1741073 None:intergenic
GAACCATTCATGATTCAGAG+CGG 0.732971 1_1:-1738065 None:intergenic
TTGTCACCGAAACAGACATG+GGG 0.746867 1_1:+1735827 Msa0000590:five_prime_UTR
GGCCAAAGATAAGAAGACCG+GGG 0.752769 1_1:+1736384 Msa0000590:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATCTATTACATATAT+TGG + chr1_1:1736878-1736897 Msa0000590:intron 10.0%
!! CAATATGAATATTAAAAAAA+AGG - chr1_1:1738850-1738869 None:intergenic 10.0%
!!! AACAATTATCAATTTTATTA+TGG - chr1_1:1741591-1741610 None:intergenic 10.0%
!!! ATATATATTGGAAGATTTTA+AGG - chr1_1:1734692-1734711 None:intergenic 15.0%
!!! TCAATTTGTCTTTTTTTTTA+GGG + chr1_1:1734991-1735010 Msa0000590:five_prime_UTR 15.0%
!! AATTTAGATAGATAGATTTA+TGG + chr1_1:1735163-1735182 Msa0000590:five_prime_UTR 15.0%
!!! TATTGTAAACAAATTTTATC+TGG + chr1_1:1738776-1738795 Msa0000590:three_prime_UTR 15.0%
!!! AATAATTTGTTATTACTCTT+GGG - chr1_1:1739690-1739709 None:intergenic 15.0%
!!! AAATAATTTGTTATTACTCT+TGG - chr1_1:1739691-1739710 None:intergenic 15.0%
!!! GTCAATTTGTCTTTTTTTTT+AGG + chr1_1:1734990-1735009 Msa0000590:five_prime_UTR 20.0%
!!! TGTTCTTCAATTTTGAAATT+TGG + chr1_1:1735030-1735049 Msa0000590:five_prime_UTR 20.0%
!! CTGTTATTAATGGTAATTAT+CGG + chr1_1:1735372-1735391 Msa0000590:five_prime_UTR 20.0%
!! AAATATATCTTCTTCAAGAT+GGG + chr1_1:1735901-1735920 Msa0000590:five_prime_UTR 20.0%
!!! AAAAATTTGTGATTTTGGTT+TGG + chr1_1:1736750-1736769 Msa0000590:five_prime_UTR 20.0%
!! TTAATTAAATTAGCAACACA+GGG - chr1_1:1737182-1737201 None:intergenic 20.0%
!! ATTAATTAAATTAGCAACAC+AGG - chr1_1:1737183-1737202 None:intergenic 20.0%
!! ATTTGAGTATTAAAGCAATA+TGG + chr1_1:1738799-1738818 Msa0000590:three_prime_UTR 20.0%
!! AAAATCATTGAAATTCTTCT+AGG - chr1_1:1739261-1739280 None:intergenic 20.0%
!! CAAACATTACAAATTATTTG+GGG - chr1_1:1739401-1739420 None:intergenic 20.0%
!! GCAAACATTACAAATTATTT+GGG - chr1_1:1739402-1739421 None:intergenic 20.0%
!!! ATTTTTTCTGACTATTTTCT+TGG + chr1_1:1739539-1739558 Msa0000590:intron 20.0%
!! TTATTTATTGCCTAGTTAAA+AGG + chr1_1:1739705-1739724 Msa0000590:intron 20.0%
!! AAAATCCTAATCAATTGATT+TGG - chr1_1:1740250-1740269 None:intergenic 20.0%
!!! TCTTGTAAATTACTCAATTT+TGG - chr1_1:1740440-1740459 None:intergenic 20.0%
!! AATATAAAATTCCCATCATT+GGG - chr1_1:1740790-1740809 None:intergenic 20.0%
!! CTATTTGAAAACGATTTAAA+TGG + chr1_1:1741283-1741302 Msa0000590:intron 20.0%
!! AAAACGATTTAAATGGAATT+TGG + chr1_1:1741290-1741309 Msa0000590:intron 20.0%
!!! ATGGTTGATTTTAATCATTA+GGG + chr1_1:1741409-1741428 Msa0000590:intron 20.0%
!! CTTCCAATATATATTTTTCG+TGG + chr1_1:1734698-1734717 Msa0000590:five_prime_UTR 25.0%
!! AATATATATTTTTCGTGGAG+CGG + chr1_1:1734703-1734722 Msa0000590:five_prime_UTR 25.0%
! TAAAAATTGAGAAAAGGAGA+GGG - chr1_1:1734924-1734943 None:intergenic 25.0%
!! TCTCCTTTTCTCAATTTTTA+GGG + chr1_1:1734924-1734943 Msa0000590:five_prime_UTR 25.0%
! AAACCCTAAAAATTGAGAAA+AGG - chr1_1:1734930-1734949 None:intergenic 25.0%
! AAAAAAAAGACAAATTGACG+CGG - chr1_1:1734989-1735008 None:intergenic 25.0%
!! AAAGAAGTTGCTGTTATTAA+TGG + chr1_1:1735362-1735381 Msa0000590:five_prime_UTR 25.0%
! GAAATATATCTTCTTCAAGA+TGG + chr1_1:1735900-1735919 Msa0000590:five_prime_UTR 25.0%
! ACATGATCTTAAAGGATTAA+TGG + chr1_1:1736582-1736601 Msa0000590:five_prime_UTR 25.0%
!!! AAACCTGCTTTTAAATAACA+GGG + chr1_1:1736720-1736739 Msa0000590:five_prime_UTR 25.0%
!! GAGCTAAAAATTTGTGATTT+TGG + chr1_1:1736745-1736764 Msa0000590:five_prime_UTR 25.0%
!!! TAAGTTTTATTCAATGCAAC+AGG - chr1_1:1736980-1736999 None:intergenic 25.0%
! CAGTTTGCAAGATTAATATT+TGG - chr1_1:1737044-1737063 None:intergenic 25.0%
! CAAATATTAATCTTGCAAAC+TGG + chr1_1:1737042-1737061 Msa0000590:intron 25.0%
! AAATAATTGACAAACACAGT+TGG - chr1_1:1737447-1737466 None:intergenic 25.0%
! AACTGTGTTTGTCAATTATT+TGG + chr1_1:1737446-1737465 Msa0000590:intron 25.0%
!!! TATTTTGTTTGCAGATTTTC+AGG + chr1_1:1737566-1737585 Msa0000590:intron 25.0%
! TTGTTAAACAATGTTGAGTA+AGG - chr1_1:1738283-1738302 None:intergenic 25.0%
! AATGTTAACCTGAAAAAATC+TGG - chr1_1:1738612-1738631 None:intergenic 25.0%
! TGGAAATTATTATGCATGAA+AGG + chr1_1:1738938-1738957 Msa0000590:three_prime_UTR 25.0%
! CTTAATATCCAAGATATCAT+AGG - chr1_1:1738973-1738992 None:intergenic 25.0%
! CTATGATATCTTGGATATTA+AGG + chr1_1:1738971-1738990 Msa0000590:intron 25.0%
! GACATTTGATATATATTGAC+TGG + chr1_1:1739072-1739091 Msa0000590:intron 25.0%
!!! ATTGACTGGTCTTTTTTTTT+TGG + chr1_1:1739086-1739105 Msa0000590:intron 25.0%
! CGCAAACATTACAAATTATT+TGG - chr1_1:1739403-1739422 None:intergenic 25.0%
! GATCAGCATTAAGAAAAAAT+TGG - chr1_1:1739492-1739511 None:intergenic 25.0%
! TAATTGAACTCCTATACTTT+AGG - chr1_1:1739875-1739894 None:intergenic 25.0%
! AATAGAAAAGCAAACAATTC+TGG - chr1_1:1739988-1740007 None:intergenic 25.0%
! ATGCTGTATAAATTCATATG+TGG + chr1_1:1740017-1740036 Msa0000590:intron 25.0%
!!! TTAGTTTTTTCTCCTTTGTA+CGG + chr1_1:1740161-1740180 Msa0000590:intron 25.0%
! TAAATGCTACAAATGTTACA+TGG + chr1_1:1740382-1740401 Msa0000590:three_prime_UTR 25.0%
! TGTCTAATACTTTACCATTA+TGG + chr1_1:1740527-1740546 Msa0000590:three_prime_UTR 25.0%
! ACATTTAACAATCTCCATAA+TGG - chr1_1:1740544-1740563 None:intergenic 25.0%
! GAATATAAAATTCCCATCAT+TGG - chr1_1:1740791-1740810 None:intergenic 25.0%
!! GGAATTTTATATTCAACTAC+TGG + chr1_1:1740797-1740816 Msa0000590:intron 25.0%
!!! ACACCAAACAATTTACTTTT+GGG - chr1_1:1740911-1740930 None:intergenic 25.0%
!! AACACCAAACAATTTACTTT+TGG - chr1_1:1740912-1740931 None:intergenic 25.0%
!! AACATGAAATTTTGCAGTTT+GGG + chr1_1:1741149-1741168 Msa0000590:intron 25.0%
!!! CATGGTTGATTTTAATCATT+AGG + chr1_1:1741408-1741427 Msa0000590:intron 25.0%
! ATTAGCAAAATACACCTATA+AGG - chr1_1:1741542-1741561 None:intergenic 25.0%
! TGCTAATTAACAATCTAAGT+TGG + chr1_1:1741555-1741574 Msa0000590:three_prime_UTR 25.0%
! GCTAATTAACAATCTAAGTT+GGG + chr1_1:1741556-1741575 Msa0000590:three_prime_UTR 25.0%
! CTAATTAACAATCTAAGTTG+GGG + chr1_1:1741557-1741576 Msa0000590:three_prime_UTR 25.0%
GCTCCACGAAAAATATATAT+TGG - chr1_1:1734704-1734723 None:intergenic 30.0%
AAGAGAAGAGAATAACGAAA+AGG - chr1_1:1734769-1734788 None:intergenic 30.0%
GGTGAAATTGGATAATGAAA+GGG - chr1_1:1734881-1734900 None:intergenic 30.0%
TGGTGAAATTGGATAATGAA+AGG - chr1_1:1734882-1734901 None:intergenic 30.0%
TCATTATCCAATTTCACCAT+CGG + chr1_1:1734883-1734902 Msa0000590:five_prime_UTR 30.0%
AAAAATTGAGAAAAGGAGAG+GGG - chr1_1:1734923-1734942 None:intergenic 30.0%
CTAAAAATTGAGAAAAGGAG+AGG - chr1_1:1734925-1734944 None:intergenic 30.0%
! CTCTCCTTTTCTCAATTTTT+AGG + chr1_1:1734923-1734942 Msa0000590:five_prime_UTR 30.0%
TAAAGTAGGAAGGTAATGAT+TGG - chr1_1:1734963-1734982 None:intergenic 30.0%
! TTGGATCATTCTTTGTGTTT+TGG + chr1_1:1735049-1735068 Msa0000590:five_prime_UTR 30.0%
! TGGATCATTCTTTGTGTTTT+GGG + chr1_1:1735050-1735069 Msa0000590:five_prime_UTR 30.0%
!!! ATTCTTTGTGTTTTGGGTTT+AGG + chr1_1:1735056-1735075 Msa0000590:five_prime_UTR 30.0%
!!! TTCTTTGTGTTTTGGGTTTA+GGG + chr1_1:1735057-1735076 Msa0000590:five_prime_UTR 30.0%
!! AAAAAAGTTTGTTGCGATTG+AGG + chr1_1:1735113-1735132 Msa0000590:five_prime_UTR 30.0%
!! AAAAAGTTTGTTGCGATTGA+GGG + chr1_1:1735114-1735133 Msa0000590:five_prime_UTR 30.0%
! AAATTCGAAAGAGTATGATC+CGG + chr1_1:1735268-1735287 Msa0000590:five_prime_UTR 30.0%
! GAAGAAGATATATTTCGAGT+TGG - chr1_1:1735896-1735915 None:intergenic 30.0%
!!! CACCTATTTTAGAATCATTG+GGG - chr1_1:1736048-1736067 None:intergenic 30.0%
!!! CCACCTATTTTAGAATCATT+GGG - chr1_1:1736049-1736068 None:intergenic 30.0%
!!! ACCACCTATTTTAGAATCAT+TGG - chr1_1:1736050-1736069 None:intergenic 30.0%
!!! TCTAAAATAGGTGGTTTTGA+AGG + chr1_1:1736055-1736074 Msa0000590:five_prime_UTR 30.0%
!! AAGAAAGAAGTGTTAACCAT+GGG + chr1_1:1736104-1736123 Msa0000590:five_prime_UTR 30.0%
ATCAGAAAAGGATGACTATA+TGG + chr1_1:1736162-1736181 Msa0000590:five_prime_UTR 30.0%
AATCTGAAGATGACATTGAT+AGG + chr1_1:1736236-1736255 Msa0000590:five_prime_UTR 30.0%
AGACTTAACAAGATAGATGA+AGG + chr1_1:1736340-1736359 Msa0000590:five_prime_UTR 30.0%
AAGATAGATGAAGGAACATA+CGG + chr1_1:1736349-1736368 Msa0000590:five_prime_UTR 30.0%
!! AACATACGGTGTTGTATATA+GGG + chr1_1:1736363-1736382 Msa0000590:five_prime_UTR 30.0%
AGCATTAAAGAAGGTCAAAA+TGG + chr1_1:1736414-1736433 Msa0000590:five_prime_UTR 30.0%
AAAATGGAGAAGGAAAAAGA+AGG + chr1_1:1736430-1736449 Msa0000590:five_prime_UTR 30.0%
TAACCATGAAAATACTGTCA+AGG - chr1_1:1736549-1736568 None:intergenic 30.0%
! TGACAGTATTTTCATGGTTA+TGG + chr1_1:1736549-1736568 Msa0000590:five_prime_UTR 30.0%
TTTCATGGTTATGGAATACA+TGG + chr1_1:1736558-1736577 Msa0000590:five_prime_UTR 30.0%
TACATGGAACATGATCTTAA+AGG + chr1_1:1736574-1736593 Msa0000590:five_prime_UTR 30.0%
TTAAGCATTTCACTTCACTT+TGG - chr1_1:1736630-1736649 None:intergenic 30.0%
! TTAATGATCCAGCTTTTAGA+AGG + chr1_1:1736646-1736665 Msa0000590:five_prime_UTR 30.0%
!! CAAACCTGCTTTTAAATAAC+AGG + chr1_1:1736719-1736738 Msa0000590:five_prime_UTR 30.0%
!! AACCTGCTTTTAAATAACAG+GGG + chr1_1:1736721-1736740 Msa0000590:five_prime_UTR 30.0%
AAACATTGACCTAAAGGAAA+GGG - chr1_1:1737081-1737100 None:intergenic 30.0%
TAAACATTGACCTAAAGGAA+AGG - chr1_1:1737082-1737101 None:intergenic 30.0%
GTATGTAAACATTGACCTAA+AGG - chr1_1:1737087-1737106 None:intergenic 30.0%
ATAAGAGATCATTTACCTGA+TGG + chr1_1:1737259-1737278 Msa0000590:exon 30.0%
TAAACATATAGACAACCATC+AGG - chr1_1:1737277-1737296 None:intergenic 30.0%
TGGTTGTCTATATGTTTATC+AGG + chr1_1:1737279-1737298 Msa0000590:CDS 30.0%
GGTTGTCTATATGTTTATCA+GGG + chr1_1:1737280-1737299 Msa0000590:CDS 30.0%
ACAGTCAATGTCTTCAATAA+AGG - chr1_1:1737689-1737708 None:intergenic 30.0%
TATACCTGAAAGGAACATTT+CGG - chr1_1:1737842-1737861 None:intergenic 30.0%
CTTAATACTAGAGTGAATTG+TGG - chr1_1:1738005-1738024 None:intergenic 30.0%
TTGATCTACTGGAAAACTAT+TGG + chr1_1:1738160-1738179 Msa0000590:intron 30.0%
ACACTTACAGAAATTTACAG+CGG - chr1_1:1738254-1738273 None:intergenic 30.0%
ACAAGATTCATGATGTTAAC+AGG + chr1_1:1738299-1738318 Msa0000590:intron 30.0%
!!! GTGGAATTTTTGGTTAAGAT+TGG + chr1_1:1738404-1738423 Msa0000590:exon 30.0%
TAGAATGTTCATTGAGACAT+AGG - chr1_1:1738441-1738460 None:intergenic 30.0%
! AGATGTTTTCTTTTACGTTC+TGG + chr1_1:1738584-1738603 Msa0000590:three_prime_UTR 30.0%
AATGCATTCCTATGATATCT+TGG + chr1_1:1738962-1738981 Msa0000590:intron 30.0%
TCTTGGATATTAAGGAATGA+AGG + chr1_1:1738979-1738998 Msa0000590:intron 30.0%
! ATATGTTTCTGTGTGATAGA+AGG + chr1_1:1739008-1739027 Msa0000590:intron 30.0%
! TATGTTTCTGTGTGATAGAA+GGG + chr1_1:1739009-1739028 Msa0000590:intron 30.0%
!!! ACTGGTCTTTTTTTTTTGGA+GGG + chr1_1:1739090-1739109 Msa0000590:intron 30.0%
GCACAAGTTATTGATCTATT+TGG + chr1_1:1739156-1739175 Msa0000590:intron 30.0%
CAAGTTATTGATCTATTTGG+AGG + chr1_1:1739159-1739178 Msa0000590:intron 30.0%
CAACAATAACCTACAAAACT+AGG - chr1_1:1739213-1739232 None:intergenic 30.0%
! GTTTTGTAGGTTATTGTTGA+AGG + chr1_1:1739214-1739233 Msa0000590:intron 30.0%
GTAATCAATGATTGTGTGAA+AGG + chr1_1:1739342-1739361 Msa0000590:intron 30.0%
ATTTGTAATGTTTGCGACAA+TGG + chr1_1:1739407-1739426 Msa0000590:intron 30.0%
AAAATTGTTCATTCACCACT+TGG - chr1_1:1739524-1739543 None:intergenic 30.0%
GATAACAAGCTGAAAATTAG+TGG - chr1_1:1739646-1739665 None:intergenic 30.0%
!! TTCTTTGCTTCCTTTTAACT+AGG - chr1_1:1739718-1739737 None:intergenic 30.0%
ACCAGAATATCCTAAAGTAT+AGG + chr1_1:1739862-1739881 Msa0000590:three_prime_UTR 30.0%
!! TCCTATACTTTAGGATATTC+TGG - chr1_1:1739866-1739885 None:intergenic 30.0%
TCATATTACTTGCATATCCA+TGG + chr1_1:1739953-1739972 Msa0000590:intron 30.0%
AATTCTGGTCAAATATTCCA+TGG - chr1_1:1739973-1739992 None:intergenic 30.0%
ATGTGGTAATTCTTCATGAA+TGG + chr1_1:1740034-1740053 Msa0000590:intron 30.0%
TGTGGTAATTCTTCATGAAT+GGG + chr1_1:1740035-1740054 Msa0000590:intron 30.0%
!!! TAGTTTTTTCTCCTTTGTAC+GGG + chr1_1:1740162-1740181 Msa0000590:intron 30.0%
!! TCCTAATCAATTGATTTGGA+GGG - chr1_1:1740246-1740265 None:intergenic 30.0%
!! ATCCTAATCAATTGATTTGG+AGG - chr1_1:1740247-1740266 None:intergenic 30.0%
!!! TCTGACCCGTTTTTTATATT+AGG + chr1_1:1740305-1740324 Msa0000590:intron 30.0%
ACCGGACCTAATATAAAAAA+CGG - chr1_1:1740314-1740333 None:intergenic 30.0%
ACAGCAAAGCTATATATTAC+CGG - chr1_1:1740332-1740351 None:intergenic 30.0%
TTATAATATGCTGTCAAGTC+TGG + chr1_1:1740570-1740589 Msa0000590:three_prime_UTR 30.0%
!! TCCCTTTTTCACACATAATT+TGG + chr1_1:1740871-1740890 Msa0000590:intron 30.0%
GCCAAATTATGTGTGAAAAA+GGG - chr1_1:1740875-1740894 None:intergenic 30.0%
AGCCAAATTATGTGTGAAAA+AGG - chr1_1:1740876-1740895 None:intergenic 30.0%
CAACCCAAAAGTAAATTGTT+TGG + chr1_1:1740905-1740924 Msa0000590:intron 30.0%
! GAACATGAAATTTTGCAGTT+TGG + chr1_1:1741148-1741167 Msa0000590:intron 30.0%
! ACATGAAATTTTGCAGTTTG+GGG + chr1_1:1741150-1741169 Msa0000590:intron 30.0%
! TTTACTTGCTACAATAGCAA+TGG + chr1_1:1741237-1741256 Msa0000590:intron 30.0%
! TTACTTGCTACAATAGCAAT+GGG + chr1_1:1741238-1741257 Msa0000590:intron 30.0%
ATGGAATTTGGCTATTATCT+AGG + chr1_1:1741302-1741321 Msa0000590:intron 30.0%
!! GTTGATTTTAATCATTAGGG+TGG + chr1_1:1741412-1741431 Msa0000590:intron 30.0%
TCATTTAAATGGCAAAGAGA+TGG - chr1_1:1741495-1741514 None:intergenic 30.0%
AACACTACCACTCATTTAAA+TGG - chr1_1:1741506-1741525 None:intergenic 30.0%
GAAGAGAATAACGAAAAGGA+AGG - chr1_1:1734765-1734784 None:intergenic 35.0%
ATAGATAGATTTATGGCTGC+TGG + chr1_1:1735170-1735189 Msa0000590:five_prime_UTR 35.0%
TTACCACGAAAACGAGTTTA+AGG + chr1_1:1735205-1735224 Msa0000590:five_prime_UTR 35.0%
AGTCCAATTTGGAAGTTTCA+AGG + chr1_1:1735234-1735253 Msa0000590:five_prime_UTR 35.0%
AGATTCCAGAGATAGGATTA+GGG + chr1_1:1735316-1735335 Msa0000590:five_prime_UTR 35.0%
! GTGCTATTGAATCTGAATCT+GGG + chr1_1:1735516-1735535 Msa0000590:five_prime_UTR 35.0%
TGCTATTGAATCTGAATCTG+GGG + chr1_1:1735517-1735536 Msa0000590:five_prime_UTR 35.0%
! AATTTTCTTTTCCTCTCCTG+CGG - chr1_1:1735566-1735585 None:intergenic 35.0%
! AAAATTTTCGCCCATTGTGT+GGG + chr1_1:1735580-1735599 Msa0000590:five_prime_UTR 35.0%
ATGATGAGGAAATGCCTAAA+AGG + chr1_1:1735966-1735985 Msa0000590:five_prime_UTR 35.0%
!! AGCCCCAATGATTCTAAAAT+AGG + chr1_1:1736043-1736062 Msa0000590:five_prime_UTR 35.0%
!! CCCAATGATTCTAAAATAGG+TGG + chr1_1:1736046-1736065 Msa0000590:five_prime_UTR 35.0%
!! GAAGAAAGAAGTGTTAACCA+TGG + chr1_1:1736103-1736122 Msa0000590:five_prime_UTR 35.0%
! TCCTGGTATTGAATCAGAAA+AGG + chr1_1:1736150-1736169 Msa0000590:five_prime_UTR 35.0%
! TCCTTTTCTGATTCAATACC+AGG - chr1_1:1736154-1736173 None:intergenic 35.0%
TATATGGACATTGATGTTCG+AGG + chr1_1:1736178-1736197 Msa0000590:five_prime_UTR 35.0%
!! GAACATACGGTGTTGTATAT+AGG + chr1_1:1736362-1736381 Msa0000590:five_prime_UTR 35.0%
GGAAGTTGTAGCATTAAAGA+AGG + chr1_1:1736405-1736424 Msa0000590:five_prime_UTR 35.0%
AAAGAAGGTCAAAATGGAGA+AGG + chr1_1:1736420-1736439 Msa0000590:five_prime_UTR 35.0%
CCTTGACATCAACTATGTAT+GGG - chr1_1:1736507-1736526 None:intergenic 35.0%
TCCTTGACATCAACTATGTA+TGG - chr1_1:1736508-1736527 None:intergenic 35.0%
!! TAGCCTTGACAGTATTTTCA+TGG + chr1_1:1736543-1736562 Msa0000590:five_prime_UTR 35.0%
TTCACTTCACTTTGGCTAAA+TGG - chr1_1:1736622-1736641 None:intergenic 35.0%
! TGAAGTATCTTCATGACAAC+TGG + chr1_1:1736671-1736690 Msa0000590:five_prime_UTR 35.0%
! GAAGTATCTTCATGACAACT+GGG + chr1_1:1736672-1736691 Msa0000590:five_prime_UTR 35.0%
AGGTGAGTATATGGTTTCAA+AGG - chr1_1:1736793-1736812 None:intergenic 35.0%
! TTTGAAACCATATACTCACC+TGG + chr1_1:1736792-1736811 Msa0000590:five_prime_UTR 35.0%
TAAAGGAAAGGGTAACTAGT+AGG - chr1_1:1737070-1737089 None:intergenic 35.0%
TACTAGTTACCCTTTCCTTT+AGG + chr1_1:1737069-1737088 Msa0000590:intron 35.0%
AAACATTGCTGCACATTCAA+AGG - chr1_1:1737118-1737137 None:intergenic 35.0%
TGTGTTAAACACATACGTGA+AGG - chr1_1:1737214-1737233 None:intergenic 35.0%
ACTCAACAGCTATTGATATG+TGG + chr1_1:1737333-1737352 Msa0000590:CDS 35.0%
ACCGTTGTTCAATGGAAAAA+CGG + chr1_1:1737394-1737413 Msa0000590:CDS 35.0%
!! TCCGTTTTTCCATTGAACAA+CGG - chr1_1:1737398-1737417 None:intergenic 35.0%
!! TTGCAGATTTTCAGGATACT+TGG + chr1_1:1737574-1737593 Msa0000590:intron 35.0%
GCACTCCAAATGAAACAATA+TGG + chr1_1:1737596-1737615 Msa0000590:CDS 35.0%
AGGAAATCATGAGTACTTAC+TGG - chr1_1:1737669-1737688 None:intergenic 35.0%
AATCCAGAATCAGAAAGAAC+TGG - chr1_1:1737909-1737928 None:intergenic 35.0%
! AAGCGAACTTTACCTTTTCA+GGG - chr1_1:1737962-1737981 None:intergenic 35.0%
!!! TTTTTAAGTAGCTTGTCCCT+AGG + chr1_1:1738202-1738221 Msa0000590:intron 35.0%
!! TTTTAAGTAGCTTGTCCCTA+GGG + chr1_1:1738203-1738222 Msa0000590:intron 35.0%
AGATTCATGATGTTAACAGG+CGG + chr1_1:1738302-1738321 Msa0000590:intron 35.0%
ATCAATGCAAACATTCTGTG+TGG - chr1_1:1738469-1738488 None:intergenic 35.0%
! ACAGAATGTTTGCATTGATG+AGG + chr1_1:1738470-1738489 Msa0000590:three_prime_UTR 35.0%
!!! ACTCCTGCTATTTTTTTAGC+AGG + chr1_1:1738542-1738561 Msa0000590:three_prime_UTR 35.0%
!!! TTTTTTTAGCAGGAGCTTGT+TGG + chr1_1:1738552-1738571 Msa0000590:three_prime_UTR 35.0%
!!! TTCTGGAACCAGATTTTTTC+AGG + chr1_1:1738601-1738620 Msa0000590:three_prime_UTR 35.0%
!! TGGCATAACCTTCTGAAATT+AGG + chr1_1:1738688-1738707 Msa0000590:three_prime_UTR 35.0%
! ACTGACTTCCTAATTTCAGA+AGG - chr1_1:1738699-1738718 None:intergenic 35.0%
CATATTGTGTATGCAAGAGA+CGG + chr1_1:1738863-1738882 Msa0000590:three_prime_UTR 35.0%
TTTCGTTGGAGAAAATGACA+TGG + chr1_1:1738918-1738937 Msa0000590:three_prime_UTR 35.0%
! GCAGGGTAACTTTAGATTTT+GGG - chr1_1:1739043-1739062 None:intergenic 35.0%
! AGCAGGGTAACTTTAGATTT+TGG - chr1_1:1739044-1739063 None:intergenic 35.0%
!!! GACTGGTCTTTTTTTTTTGG+AGG + chr1_1:1739089-1739108 Msa0000590:intron 35.0%
!!! CTGGTCTTTTTTTTTTGGAG+GGG + chr1_1:1739091-1739110 Msa0000590:intron 35.0%
!!! TGGTCTTTTTTTTTTGGAGG+GGG + chr1_1:1739092-1739111 Msa0000590:intron 35.0%
GTTATGATGAAGAAATGCAC+AGG - chr1_1:1739128-1739147 None:intergenic 35.0%
!!! TTACGTGAACCTAGTTTTGT+AGG + chr1_1:1739201-1739220 Msa0000590:intron 35.0%
TTCCCTGTAGTGTTTCTTTA+AGG + chr1_1:1739313-1739332 Msa0000590:intron 35.0%
TCCCTGTAGTGTTTCTTTAA+GGG + chr1_1:1739314-1739333 Msa0000590:intron 35.0%
ACCCTTAAAGAAACACTACA+GGG - chr1_1:1739318-1739337 None:intergenic 35.0%
!! CAAGAGCACACAAATGTTTT+CGG - chr1_1:1739436-1739455 None:intergenic 35.0%
TCTTAATGCTGATCATGTTG+AGG + chr1_1:1739498-1739517 Msa0000590:intron 35.0%
!!! CATTTTTTTCTCACAGGAAG+AGG - chr1_1:1739621-1739640 None:intergenic 35.0%
!!! GTGGTACATTTTTTTCTCAC+AGG - chr1_1:1739627-1739646 None:intergenic 35.0%
! TAGAGGTACAATGCAAATCT+TGG + chr1_1:1739913-1739932 Msa0000590:intron 35.0%
TTCTTCATGAATGGGATATG+TGG + chr1_1:1740043-1740062 Msa0000590:intron 35.0%
ATGATATATCTTCCAGAGCA+AGG + chr1_1:1740095-1740114 Msa0000590:intron 35.0%
!! ATCAATTGATTTGGAGGGTT+GGG - chr1_1:1740241-1740260 None:intergenic 35.0%
!! AATCAATTGATTTGGAGGGT+TGG - chr1_1:1740242-1740261 None:intergenic 35.0%
ACCCTCCAAATCAATTGATT+AGG + chr1_1:1740242-1740261 Msa0000590:intron 35.0%
CCGGACCTAATATAAAAAAC+GGG - chr1_1:1740313-1740332 None:intergenic 35.0%
!!! CCCGTTTTTTATATTAGGTC+CGG + chr1_1:1740310-1740329 Msa0000590:intron 35.0%
GAAATTGTTCACAGTGAACA+TGG - chr1_1:1740362-1740381 None:intergenic 35.0%
TTACAAGACACCAAAATTCC+CGG + chr1_1:1740452-1740471 Msa0000590:three_prime_UTR 35.0%
! AACATAAGAACCGGGAATTT+TGG - chr1_1:1740465-1740484 None:intergenic 35.0%
AAAGTCAGAACATAAGAACC+GGG - chr1_1:1740473-1740492 None:intergenic 35.0%
GAAAGTCAGAACATAAGAAC+CGG - chr1_1:1740474-1740493 None:intergenic 35.0%
TCTTATGTTCTGACTTTCGA+TGG + chr1_1:1740476-1740495 Msa0000590:three_prime_UTR 35.0%
CTTATGTTCTGACTTTCGAT+GGG + chr1_1:1740477-1740496 Msa0000590:three_prime_UTR 35.0%
AAGTATTAGACACAACTGGA+AGG - chr1_1:1740519-1740538 None:intergenic 35.0%
! GGTAAAGTATTAGACACAAC+TGG - chr1_1:1740523-1740542 None:intergenic 35.0%
TCAAGGAAAAAAACATGGGT+GGG - chr1_1:1740747-1740766 None:intergenic 35.0%
AGCCTCAAGGAAAAAAACAT+GGG - chr1_1:1740751-1740770 None:intergenic 35.0%
AAGCCTCAAGGAAAAAAACA+TGG - chr1_1:1740752-1740771 None:intergenic 35.0%
AACAGATAATTGAAGCCTCA+AGG - chr1_1:1740764-1740783 None:intergenic 35.0%
TTATCTGTTACTCCCAATGA+TGG + chr1_1:1740775-1740794 Msa0000590:intron 35.0%
TATCTGTTACTCCCAATGAT+GGG + chr1_1:1740776-1740795 Msa0000590:intron 35.0%
TGTTCTGCAGTTTAGTATTG+AGG + chr1_1:1740837-1740856 Msa0000590:intron 35.0%
ACTATACAGTAAGCATATCC+TGG + chr1_1:1741085-1741104 Msa0000590:intron 35.0%
CTATACAGTAAGCATATCCT+GGG + chr1_1:1741086-1741105 Msa0000590:intron 35.0%
GTGAAAGGTTAAAAAAACCC+AGG - chr1_1:1741106-1741125 None:intergenic 35.0%
!!! GGTTTTTTTAACCTTTCACG+CGG + chr1_1:1741107-1741126 Msa0000590:intron 35.0%
!! AAATTTTGCAGTTTGGGGTA+AGG + chr1_1:1741155-1741174 Msa0000590:intron 35.0%
TGTTCCCATTTATGCTCAAT+TGG + chr1_1:1741193-1741212 Msa0000590:intron 35.0%
TCCACCAATTGAGCATAAAT+GGG - chr1_1:1741200-1741219 None:intergenic 35.0%
ATCCACCAATTGAGCATAAA+TGG - chr1_1:1741201-1741220 None:intergenic 35.0%
GTTTGCTTGATCTTGTCTTA+AGG + chr1_1:1741378-1741397 Msa0000590:intron 35.0%
! TTGTCTTAAGGTGTTTCTCA+TGG + chr1_1:1741390-1741409 Msa0000590:intron 35.0%
! CTCTTTGCCATTTAAATGAG+TGG + chr1_1:1741496-1741515 Msa0000590:three_prime_UTR 35.0%
GGAGCGGAATTATCGTAATT+CGG + chr1_1:1734719-1734738 Msa0000590:five_prime_UTR 40.0%
AAAGAGAAATCGAACCTTCG+AGG - chr1_1:1734795-1734814 None:intergenic 40.0%
AGGATTACCGATGGTGAAAT+TGG - chr1_1:1734893-1734912 None:intergenic 40.0%
GGATTGAAAAGGATTACCGA+TGG - chr1_1:1734902-1734921 None:intergenic 40.0%
AAAAGGAGAGGGGATTGAAA+AGG - chr1_1:1734913-1734932 None:intergenic 40.0%
TTTGTTGCGATTGAGGGATT+AGG + chr1_1:1735120-1735139 Msa0000590:five_prime_UTR 40.0%
TTGTTGCGATTGAGGGATTA+GGG + chr1_1:1735121-1735140 Msa0000590:five_prime_UTR 40.0%
! GATCCTTAAACTCGTTTTCG+TGG - chr1_1:1735211-1735230 None:intergenic 40.0%
TAAGGATCACGAGTCCAATT+TGG + chr1_1:1735223-1735242 Msa0000590:five_prime_UTR 40.0%
CCAATTTGGAAGTTTCAAGG+CGG + chr1_1:1735237-1735256 Msa0000590:five_prime_UTR 40.0%
CAATTTGGAAGTTTCAAGGC+GGG + chr1_1:1735238-1735257 Msa0000590:five_prime_UTR 40.0%
AATTTGGAAGTTTCAAGGCG+GGG + chr1_1:1735239-1735258 Msa0000590:five_prime_UTR 40.0%
AGTATGATCCGGTTAGGAAT+GGG + chr1_1:1735279-1735298 Msa0000590:five_prime_UTR 40.0%
GAGATTCCAGAGATAGGATT+AGG + chr1_1:1735315-1735334 Msa0000590:five_prime_UTR 40.0%
!! GGTGCTATTGAATCTGAATC+TGG + chr1_1:1735515-1735534 Msa0000590:five_prime_UTR 40.0%
! GAAAATTTTCGCCCATTGTG+TGG + chr1_1:1735579-1735598 Msa0000590:five_prime_UTR 40.0%
ACAGTAACCTTAGATGCTGT+GGG - chr1_1:1735782-1735801 None:intergenic 40.0%
AACAGTAACCTTAGATGCTG+TGG - chr1_1:1735783-1735802 None:intergenic 40.0%
TCATTACCCCATGTCTGTTT+CGG - chr1_1:1735836-1735855 None:intergenic 40.0%
AGATAACTCTCCTGTTGATG+AGG + chr1_1:1735931-1735950 Msa0000590:five_prime_UTR 40.0%
! GATAACTCTCCTGTTGATGA+GGG + chr1_1:1735932-1735951 Msa0000590:five_prime_UTR 40.0%
AGGAAATGCCTAAAAGGAAG+AGG + chr1_1:1735972-1735991 Msa0000590:five_prime_UTR 40.0%
!! GTTAGTCTCCTCTTCCTTTT+AGG - chr1_1:1735983-1736002 None:intergenic 40.0%
TTCTTCCGAATCAGATGATC+TGG - chr1_1:1736089-1736108 None:intergenic 40.0%
TTCTGTATCTGAGTGACTAC+TGG - chr1_1:1736218-1736237 None:intergenic 40.0%
CTTTAATGCTACAACTTCCC+CGG - chr1_1:1736404-1736423 None:intergenic 40.0%
ATTTCCCTAAGAGAAGTCAG+CGG - chr1_1:1736460-1736479 None:intergenic 40.0%
AACTATGTATGGGTGGTGAA+AGG - chr1_1:1736497-1736516 None:intergenic 40.0%
TGACATCAACTATGTATGGG+TGG - chr1_1:1736504-1736523 None:intergenic 40.0%
! CCCATACATAGTTGATGTCA+AGG + chr1_1:1736504-1736523 Msa0000590:five_prime_UTR 40.0%
! AGTTGATGTCAAGGAAGTAG+TGG + chr1_1:1736513-1736532 Msa0000590:five_prime_UTR 40.0%
! ACTTCACACCTTCTAAAAGC+TGG - chr1_1:1736657-1736676 None:intergenic 40.0%
! CACCCCTGTTATTTAAAAGC+AGG - chr1_1:1736726-1736745 None:intergenic 40.0%
!! TTTGGTTTGGCTCGTCAATA+TGG + chr1_1:1736763-1736782 Msa0000590:five_prime_UTR 40.0%
!! TTGGTTTGGCTCGTCAATAT+GGG + chr1_1:1736764-1736783 Msa0000590:five_prime_UTR 40.0%
ATTGCTGCACATTCAAAGGA+AGG - chr1_1:1737114-1737133 None:intergenic 40.0%
GCTATTGATATGTGGTCTCT+TGG + chr1_1:1737341-1737360 Msa0000590:CDS 40.0%
GTGGTCTCTTGGTTGTATAA+TGG + chr1_1:1737352-1737371 Msa0000590:CDS 40.0%
AATGGCTGAGCTATTGTCTA+AGG + chr1_1:1737370-1737389 Msa0000590:CDS 40.0%
TCTAAGGAACCGTTGTTCAA+TGG + chr1_1:1737386-1737405 Msa0000590:CDS 40.0%
GGAATTCGATCAACTTGACA+AGG + chr1_1:1737415-1737434 Msa0000590:CDS 40.0%
CCTGGCCATATTGTTTCATT+TGG - chr1_1:1737604-1737623 None:intergenic 40.0%
CCAAATGAAACAATATGGCC+AGG + chr1_1:1737601-1737620 Msa0000590:CDS 40.0%
CTCAAAATTACCTGGAGTCA+AGG + chr1_1:1737627-1737646 Msa0000590:CDS 40.0%
ACAAAATTGACCTTGACTCC+AGG - chr1_1:1737640-1737659 None:intergenic 40.0%
GTAACAGTACAAGTCACCAA+GGG - chr1_1:1737793-1737812 None:intergenic 40.0%
TGTAACAGTACAAGTCACCA+AGG - chr1_1:1737794-1737813 None:intergenic 40.0%
CGCAGAAGATTATACCTGAA+AGG - chr1_1:1737852-1737871 None:intergenic 40.0%
TCTCCAGTTCTTTCTGATTC+TGG + chr1_1:1737903-1737922 Msa0000590:CDS 40.0%
!! CCTTTTCAGGGTCATAAGTT+AGG - chr1_1:1737950-1737969 None:intergenic 40.0%
CCTAACTTATGACCCTGAAA+AGG + chr1_1:1737947-1737966 Msa0000590:CDS 40.0%
! CAAGCGAACTTTACCTTTTC+AGG - chr1_1:1737963-1737982 None:intergenic 40.0%
ACACCTACTATTGTATGCAG+CGG + chr1_1:1738029-1738048 Msa0000590:intron 40.0%
GAACCATTCATGATTCAGAG+CGG - chr1_1:1738068-1738087 None:intergenic 40.0%
AATTCTTTGCTCTTGGGAAG+AGG - chr1_1:1738100-1738119 None:intergenic 40.0%
GGCATGAATTCTTTGCTCTT+GGG - chr1_1:1738106-1738125 None:intergenic 40.0%
AGGCATGAATTCTTTGCTCT+TGG - chr1_1:1738107-1738126 None:intergenic 40.0%
AGGACAGGTATTTGATCTAC+TGG + chr1_1:1738149-1738168 Msa0000590:intron 40.0%
! TTTAAGTAGCTTGTCCCTAG+GGG + chr1_1:1738204-1738223 Msa0000590:intron 40.0%
! ATGTTTGCATTGATGAGGTG+AGG + chr1_1:1738475-1738494 Msa0000590:three_prime_UTR 40.0%
AGGTGAGGATATGTACTGAA+CGG + chr1_1:1738490-1738509 Msa0000590:three_prime_UTR 40.0%
GCTCCTGCTAAAAAAATAGC+AGG - chr1_1:1738548-1738567 None:intergenic 40.0%
AGGTTAACATTCTTCGTGCT+TGG + chr1_1:1738621-1738640 Msa0000590:three_prime_UTR 40.0%
CAAATGTCTCTCTTCTAGCA+GGG - chr1_1:1739060-1739079 None:intergenic 40.0%
TCAAATGTCTCTCTTCTAGC+AGG - chr1_1:1739061-1739080 None:intergenic 40.0%
!!! GGTCTTTTTTTTTTGGAGGG+GGG + chr1_1:1739093-1739112 Msa0000590:intron 40.0%
!!! GTCTTTTTTTTTTGGAGGGG+GGG + chr1_1:1739094-1739113 Msa0000590:intron 40.0%
!!! TCTTTTTTTTTTGGAGGGGG+GGG + chr1_1:1739095-1739114 Msa0000590:intron 40.0%
CACCCTTAAAGAAACACTAC+AGG - chr1_1:1739319-1739338 None:intergenic 40.0%
GGAATGCTAGTGAAACATAG+TGG - chr1_1:1739600-1739619 None:intergenic 40.0%
GTTCTACAACACACTAGATG+GGG - chr1_1:1739668-1739687 None:intergenic 40.0%
GGTTCTACAACACACTAGAT+GGG - chr1_1:1739669-1739688 None:intergenic 40.0%
AAGATTGACGTTTGGGAACA+AGG + chr1_1:1739770-1739789 Msa0000590:intron 40.0%
TTCATGAATGGGATATGTGG+TGG + chr1_1:1740046-1740065 Msa0000590:intron 40.0%
! AAGGCTGCAACATTGTTGTT+GGG + chr1_1:1740114-1740133 Msa0000590:intron 40.0%
!! CACAACTGGTTTGAGTTAAG+GGG - chr1_1:1740215-1740234 None:intergenic 40.0%
!! GCACAACTGGTTTGAGTTAA+GGG - chr1_1:1740216-1740235 None:intergenic 40.0%
!! AGCACAACTGGTTTGAGTTA+AGG - chr1_1:1740217-1740236 None:intergenic 40.0%
TATTAGACACAACTGGAAGG+TGG - chr1_1:1740516-1740535 None:intergenic 40.0%
!! AGGTCTTATTGTGTCCACAA+TGG + chr1_1:1740602-1740621 Msa0000590:three_prime_UTR 40.0%
ATTGTGTCCACAATGGTGAA+AGG + chr1_1:1740609-1740628 Msa0000590:three_prime_UTR 40.0%
ATACTCACCTTTCACCATTG+TGG - chr1_1:1740619-1740638 None:intergenic 40.0%
CTCAAGGAAAAAAACATGGG+TGG - chr1_1:1740748-1740767 None:intergenic 40.0%
!!! CACCCATGTTTTTTTCCTTG+AGG + chr1_1:1740746-1740765 Msa0000590:intron 40.0%
! TCTGCAGTTTAGTATTGAGG+TGG + chr1_1:1740840-1740859 Msa0000590:intron 40.0%
! CTGCAGTTTAGTATTGAGGT+GGG + chr1_1:1740841-1740860 Msa0000590:intron 40.0%
! TGCAGTTTAGTATTGAGGTG+GGG + chr1_1:1740842-1740861 Msa0000590:intron 40.0%
! ATGTAAAGCATCCACACTGA+TGG + chr1_1:1741062-1741081 Msa0000590:three_prime_UTR 40.0%
TACTGTATAGTCCATCAGTG+TGG - chr1_1:1741076-1741095 None:intergenic 40.0%
TCCCATTTATGCTCAATTGG+TGG + chr1_1:1741196-1741215 Msa0000590:intron 40.0%
AATCATTAGGGTGGAATGTG+TGG + chr1_1:1741421-1741440 Msa0000590:intron 40.0%
ATCATTAGGGTGGAATGTGT+GGG + chr1_1:1741422-1741441 Msa0000590:intron 40.0%
! GTGAACCAACATTTGGGTTA+AGG - chr1_1:1741473-1741492 None:intergenic 40.0%
GAGATGGTGAACCAACATTT+GGG - chr1_1:1741479-1741498 None:intergenic 40.0%
AGAGATGGTGAACCAACATT+TGG - chr1_1:1741480-1741499 None:intergenic 40.0%
TGCGTAGGGTAAAACCTTAT+AGG + chr1_1:1741525-1741544 Msa0000590:three_prime_UTR 40.0%
TCTCTTCTCTTTCTCCTCGA+AGG + chr1_1:1734778-1734797 Msa0000590:five_prime_UTR 45.0%
! AATTGACGCGGTGCTAAAGT+AGG - chr1_1:1734977-1734996 None:intergenic 45.0%
!!! GTGTTTTGGGTTTAGGGTTC+TGG + chr1_1:1735063-1735082 Msa0000590:five_prime_UTR 45.0%
CCGCCTTGAAACTTCCAAAT+TGG - chr1_1:1735240-1735259 None:intergenic 45.0%
! CGAAAGAGTATGATCCGGTT+AGG + chr1_1:1735273-1735292 Msa0000590:five_prime_UTR 45.0%
GAGTATGATCCGGTTAGGAA+TGG + chr1_1:1735278-1735297 Msa0000590:five_prime_UTR 45.0%
GTATGATCCGGTTAGGAATG+GGG + chr1_1:1735280-1735299 Msa0000590:five_prime_UTR 45.0%
TATGATCCGGTTAGGAATGG+GGG + chr1_1:1735281-1735300 Msa0000590:five_prime_UTR 45.0%
ATTATCGGTCATCTTCCAGC+CGG + chr1_1:1735387-1735406 Msa0000590:five_prime_UTR 45.0%
ACTTCGCAGAAAAACCACAC+CGG - chr1_1:1735448-1735467 None:intergenic 45.0%
! AATCTGAATCTGGGGTGAAC+AGG + chr1_1:1735525-1735544 Msa0000590:five_prime_UTR 45.0%
TCATCCTGATCCCACACAAT+GGG - chr1_1:1735593-1735612 None:intergenic 45.0%
TCAGGATGACAAGGAAGTGA+AGG + chr1_1:1735604-1735623 Msa0000590:five_prime_UTR 45.0%
CAGGATGACAAGGAAGTGAA+GGG + chr1_1:1735605-1735624 Msa0000590:five_prime_UTR 45.0%
AGGATGACAAGGAAGTGAAG+GGG + chr1_1:1735606-1735625 Msa0000590:five_prime_UTR 45.0%
! AGCGACAGAACAGACGATTT+TGG - chr1_1:1735692-1735711 None:intergenic 45.0%
AAGTTCAAGTGCGTTCTGTC+AGG + chr1_1:1735729-1735748 Msa0000590:five_prime_UTR 45.0%
TGTCAGGAACAGGGAAACTA+GGG + chr1_1:1735745-1735764 Msa0000590:five_prime_UTR 45.0%
GTTACTGTTCCTTCTCCTTC+CGG + chr1_1:1735794-1735813 Msa0000590:five_prime_UTR 45.0%
CTTGTCACCGAAACAGACAT+GGG + chr1_1:1735826-1735845 Msa0000590:five_prime_UTR 45.0%
TTGTCACCGAAACAGACATG+GGG + chr1_1:1735827-1735846 Msa0000590:five_prime_UTR 45.0%
ACAGACATGGGGTAATGATC+AGG + chr1_1:1735838-1735857 Msa0000590:five_prime_UTR 45.0%
GGAACATAATCCTCACCTTC+TGG - chr1_1:1735875-1735894 None:intergenic 45.0%
AGAATCTCACCCTCATCAAC+AGG - chr1_1:1735944-1735963 None:intergenic 45.0%
GGGTGAGATTCTCAATGATG+AGG + chr1_1:1735952-1735971 Msa0000590:five_prime_UTR 45.0%
! GAGACTAACTCCTGAGGTTT+TGG + chr1_1:1735994-1736013 Msa0000590:five_prime_UTR 45.0%
ACTCTAGTCTCCAAAACCTC+AGG - chr1_1:1736007-1736026 None:intergenic 45.0%
!!! AGGTTTTGGAGACTAGAGTG+AGG + chr1_1:1736008-1736027 Msa0000590:five_prime_UTR 45.0%
TCGAGCCAGATCATCTGATT+CGG + chr1_1:1736081-1736100 Msa0000590:five_prime_UTR 45.0%
TCCAGCTCAACCTCAAAGAA+CGG + chr1_1:1736276-1736295 Msa0000590:five_prime_UTR 45.0%
AGCATGTTGACCGTTCTTTG+AGG - chr1_1:1736289-1736308 None:intergenic 45.0%
AAGAACGGTCAACATGCTTC+AGG + chr1_1:1736291-1736310 Msa0000590:five_prime_UTR 45.0%
AGAACGGTCAACATGCTTCA+GGG + chr1_1:1736292-1736311 Msa0000590:five_prime_UTR 45.0%
AGGGCCAAAGATAAGAAGAC+CGG + chr1_1:1736382-1736401 Msa0000590:five_prime_UTR 45.0%
TTCCCCGGTCTTCTTATCTT+TGG - chr1_1:1736389-1736408 None:intergenic 45.0%
TTTCCCTAAGAGAAGTCAGC+GGG - chr1_1:1736459-1736478 None:intergenic 45.0%
GATGTCAAGGAAGTAGTGGT+TGG + chr1_1:1736517-1736536 Msa0000590:five_prime_UTR 45.0%
ATGACAACTGGGTGCTTCAT+AGG + chr1_1:1736683-1736702 Msa0000590:five_prime_UTR 45.0%
TGACAACTGGGTGCTTCATA+GGG + chr1_1:1736684-1736703 Msa0000590:five_prime_UTR 45.0%
GAAACCATATACTCACCTGG+TGG + chr1_1:1736795-1736814 Msa0000590:five_prime_UTR 45.0%
GTAACCACCAGGTGAGTATA+TGG - chr1_1:1736802-1736821 None:intergenic 45.0%
TGTACCAAAGAGTAACCACC+AGG - chr1_1:1736813-1736832 None:intergenic 45.0%
TGGTGGTTACTCTTTGGTAC+AGG + chr1_1:1736812-1736831 Msa0000590:five_prime_UTR 45.0%
!! CCAGGTAATTTTGAGAAGCC+TGG - chr1_1:1737622-1737641 None:intergenic 45.0%
CCAGGCTTCTCAAAATTACC+TGG + chr1_1:1737619-1737638 Msa0000590:CDS 45.0%
! TTTTCTGCCACTGTTTTCCC+AGG + chr1_1:1737728-1737747 Msa0000590:intron 45.0%
! TTTTCCCAGGCTTCCAACTT+TGG + chr1_1:1737741-1737760 Msa0000590:intron 45.0%
TTTCCCAGGCTTCCAACTTT+GGG + chr1_1:1737742-1737761 Msa0000590:intron 45.0%
! CTTCCAACTTTGGGTGGTTT+TGG + chr1_1:1737751-1737770 Msa0000590:intron 45.0%
AGACCAAAACCACCCAAAGT+TGG - chr1_1:1737757-1737776 None:intergenic 45.0%
ACGACCGAAATGTTCCTTTC+AGG + chr1_1:1737835-1737854 Msa0000590:intron 45.0%
TTTCCTGCCACATCATTCAC+TGG + chr1_1:1737879-1737898 Msa0000590:CDS 45.0%
TGGAGATCCAGTGAATGATG+TGG - chr1_1:1737889-1737908 None:intergenic 45.0%
GATCCGCTGCATACAATAGT+AGG - chr1_1:1738035-1738054 None:intergenic 45.0%
CTATTGTATGCAGCGGATCA+CGG + chr1_1:1738036-1738055 Msa0000590:intron 45.0%
! AAGCCGCTCTGAATCATGAA+TGG + chr1_1:1738062-1738081 Msa0000590:CDS 45.0%
TCTTGGGAAGAGGAACTTCA+CGG - chr1_1:1738090-1738109 None:intergenic 45.0%
GCATGTTGAGCAGGAAATGT+AGG - chr1_1:1738127-1738146 None:intergenic 45.0%
ATTTCCTGCTCAACATGCTC+AGG + chr1_1:1738129-1738148 Msa0000590:CDS 45.0%
! TTAAGTAGCTTGTCCCTAGG+GGG + chr1_1:1738205-1738224 Msa0000590:intron 45.0%
! TGTGCTTTTCTATCCCCCTA+GGG - chr1_1:1738221-1738240 None:intergenic 45.0%
ATGATGTTAACAGGCGGATG+CGG + chr1_1:1738308-1738327 Msa0000590:intron 45.0%
!! TTGGGGACTGGTGGAATTTT+TGG + chr1_1:1738394-1738413 Msa0000590:CDS 45.0%
TTGTGTATGCAAGAGACGGT+TGG + chr1_1:1738867-1738886 Msa0000590:three_prime_UTR 45.0%
TCTCCAACGAAATGCACAGA+AGG - chr1_1:1738910-1738929 None:intergenic 45.0%
GGGTTCTACAACACACTAGA+TGG - chr1_1:1739670-1739689 None:intergenic 45.0%
ACCGTCTGAAGATTGACGTT+TGG + chr1_1:1739762-1739781 Msa0000590:intron 45.0%
CCCAAACGTCAATCTTCAGA+CGG - chr1_1:1739766-1739785 None:intergenic 45.0%
CCGTCTGAAGATTGACGTTT+GGG + chr1_1:1739763-1739782 Msa0000590:intron 45.0%
ACTGCAGTATCAAAGCAAGC+AGG + chr1_1:1739828-1739847 Msa0000590:intron 45.0%
GTATCAAAGCAAGCAGGTTG+AGG + chr1_1:1739834-1739853 Msa0000590:intron 45.0%
TTGTCCTTCAGACTCTCTAG+AGG + chr1_1:1739896-1739915 Msa0000590:three_prime_UTR 45.0%
! TGTACCTCTAGAGAGTCTGA+AGG - chr1_1:1739903-1739922 None:intergenic 45.0%
CAAGGCTGCAACATTGTTGT+TGG + chr1_1:1740113-1740132 Msa0000590:intron 45.0%
TGAGTTAAGGGGTAAGGAGT+TGG - chr1_1:1740204-1740223 None:intergenic 45.0%
! CTGGTTTGAGTTAAGGGGTA+AGG - chr1_1:1740210-1740229 None:intergenic 45.0%
AAACGGGTCAGAGTAAGATC+AGG - chr1_1:1740297-1740316 None:intergenic 45.0%
GTCAAGTCTGGTCGTAAAGT+AGG + chr1_1:1740582-1740601 Msa0000590:three_prime_UTR 45.0%
! GCAGTTTAGTATTGAGGTGG+GGG + chr1_1:1740843-1740862 Msa0000590:intron 45.0%
ATTCCGAACTTGCGACAACT+AGG - chr1_1:1740959-1740978 None:intergenic 45.0%
TGTCGCAAGTTCGGAATAGT+TGG + chr1_1:1740962-1740981 Msa0000590:three_prime_UTR 45.0%
GTCGCAAGTTCGGAATAGTT+GGG + chr1_1:1740963-1740982 Msa0000590:three_prime_UTR 45.0%
CAAGTTCGGAATAGTTGGGT+CGG + chr1_1:1740967-1740986 Msa0000590:three_prime_UTR 45.0%
AAGTTCGGAATAGTTGGGTC+GGG + chr1_1:1740968-1740987 Msa0000590:three_prime_UTR 45.0%
TAATTCACACAGCTGCGAGA+TGG + chr1_1:1741027-1741046 Msa0000590:three_prime_UTR 45.0%
AATTCACACAGCTGCGAGAT+GGG + chr1_1:1741028-1741047 Msa0000590:three_prime_UTR 45.0%
GTGGGTATCACCTACACAAT+CGG + chr1_1:1741440-1741459 Msa0000590:three_prime_UTR 45.0%
GCACTCCTTAACCCAAATGT+TGG + chr1_1:1741465-1741484 Msa0000590:three_prime_UTR 45.0%
! AATGAGTGGTAGTGTTGCGT+AGG + chr1_1:1741510-1741529 Msa0000590:three_prime_UTR 45.0%
! ATGAGTGGTAGTGTTGCGTA+GGG + chr1_1:1741511-1741530 Msa0000590:three_prime_UTR 45.0%
!!! CATTTTAATTTTAATTTTAT+TGG + chr1_1:1738751-1738770 Msa0000590:three_prime_UTR 5.0%
!!! ATATATATATATTTTATCTA+TGG + chr1_1:1740717-1740736 Msa0000590:intron 5.0%
TTTATGGCTGCTGGCAGACA+TGG + chr1_1:1735179-1735198 Msa0000590:five_prime_UTR 50.0%
ATGATCCGGTTAGGAATGGG+GGG + chr1_1:1735282-1735301 Msa0000590:five_prime_UTR 50.0%
CCTCACCCTAATCCTATCTC+TGG - chr1_1:1735324-1735343 None:intergenic 50.0%
CCAGAGATAGGATTAGGGTG+AGG + chr1_1:1735321-1735340 Msa0000590:five_prime_UTR 50.0%
TAGGATTAGGGTGAGGCAGA+AGG + chr1_1:1735328-1735347 Msa0000590:five_prime_UTR 50.0%
GGTGAGGCAGAAGGATGTTA+GGG + chr1_1:1735337-1735356 Msa0000590:five_prime_UTR 50.0%
AAGTCAACCGATAGAGAGCC+TGG + chr1_1:1735464-1735483 Msa0000590:five_prime_UTR 50.0%
AAGCTCACCAGGCTCTCTAT+CGG - chr1_1:1735474-1735493 None:intergenic 50.0%
GTGAGCTTTCCAGTGAGAGT+GGG + chr1_1:1735486-1735505 Msa0000590:five_prime_UTR 50.0%
! AATCTGGGGTGAACAGGTCT+CGG + chr1_1:1735531-1735550 Msa0000590:five_prime_UTR 50.0%
! TTTCTTTTCCTCTCCTGCGG+AGG - chr1_1:1735563-1735582 None:intergenic 50.0%
GTCATCCTGATCCCACACAA+TGG - chr1_1:1735594-1735613 None:intergenic 50.0%
TGTGTGGGATCAGGATGACA+AGG + chr1_1:1735595-1735614 Msa0000590:five_prime_UTR 50.0%
TGAAGGGGTCATCGAAGGTT+AGG + chr1_1:1735621-1735640 Msa0000590:five_prime_UTR 50.0%
GAAGGGGTCATCGAAGGTTA+GGG + chr1_1:1735622-1735641 Msa0000590:five_prime_UTR 50.0%
!! ACAGACGATTTTGGCAGCTG+AGG - chr1_1:1735683-1735702 None:intergenic 50.0%
AAGTGCGTTCTGTCAGGAAC+AGG + chr1_1:1735735-1735754 Msa0000590:five_prime_UTR 50.0%
AGTGCGTTCTGTCAGGAACA+GGG + chr1_1:1735736-1735755 Msa0000590:five_prime_UTR 50.0%
CTGTCAGGAACAGGGAAACT+AGG + chr1_1:1735744-1735763 Msa0000590:five_prime_UTR 50.0%
TGAGTTGCCCACAGCATCTA+AGG + chr1_1:1735772-1735791 Msa0000590:five_prime_UTR 50.0%
CCATGTCTGTTTCGGTGACA+AGG - chr1_1:1735828-1735847 None:intergenic 50.0%
CCTTGTCACCGAAACAGACA+TGG + chr1_1:1735825-1735844 Msa0000590:five_prime_UTR 50.0%
TCTTCTTCAAGATGGGCAGC+TGG + chr1_1:1735908-1735927 Msa0000590:five_prime_UTR 50.0%
GAAGAGGAGACTAACTCCTG+AGG + chr1_1:1735988-1736007 Msa0000590:five_prime_UTR 50.0%
AACCATGGGAGAACGTCTAG+TGG + chr1_1:1736118-1736137 Msa0000590:five_prime_UTR 50.0%
!! GTTCTTTGAGGTTGAGCTGG+AGG - chr1_1:1736277-1736296 None:intergenic 50.0%
!! ACCGTTCTTTGAGGTTGAGC+TGG - chr1_1:1736280-1736299 None:intergenic 50.0%
GGGCCAAAGATAAGAAGACC+GGG + chr1_1:1736383-1736402 Msa0000590:five_prime_UTR 50.0%
GGCCAAAGATAAGAAGACCG+GGG + chr1_1:1736384-1736403 Msa0000590:five_prime_UTR 50.0%
!! CTTCCCGCTGACTTCTCTTA+GGG + chr1_1:1736453-1736472 Msa0000590:five_prime_UTR 50.0%
CTCACCTGGTGGTTACTCTT+TGG + chr1_1:1736806-1736825 Msa0000590:five_prime_UTR 50.0%
! AGGGCACCTGAACTTCTTCT+GGG + chr1_1:1737299-1737318 Msa0000590:CDS 50.0%
TTTGCCCCCAGAAGAAGTTC+AGG - chr1_1:1737308-1737327 None:intergenic 50.0%
TTGGAAGCCTGGGAAAACAG+TGG - chr1_1:1737738-1737757 None:intergenic 50.0%
!!! GTGGTTTTGGTCTGACTAGC+TGG + chr1_1:1737764-1737783 Msa0000590:intron 50.0%
ACAGTACAAGTCACCAAGGG+AGG - chr1_1:1737790-1737809 None:intergenic 50.0%
GATCCAGTGAATGATGTGGC+AGG - chr1_1:1737885-1737904 None:intergenic 50.0%
! CTGTGCTTTTCTATCCCCCT+AGG - chr1_1:1738222-1738241 None:intergenic 50.0%
! GGGATAGAAAAGCACAGCTG+TGG + chr1_1:1738225-1738244 Msa0000590:intron 50.0%
CAAGAGTCCAGACCCTTTAG+AGG + chr1_1:1738339-1738358 Msa0000590:CDS 50.0%
GAGTTGCAGCAGGGTGAATT+GGG + chr1_1:1738376-1738395 Msa0000590:CDS 50.0%
AGTTGCAGCAGGGTGAATTG+GGG + chr1_1:1738377-1738396 Msa0000590:CDS 50.0%
! AAGAGACGGTTGGTGTGAAG+TGG + chr1_1:1738877-1738896 Msa0000590:three_prime_UTR 50.0%
! GGTTGGTGTGAAGTGGAAGA+GGG + chr1_1:1738884-1738903 Msa0000590:three_prime_UTR 50.0%
GTGCTCTTGCGAGAGTTGTA+AGG + chr1_1:1739447-1739466 Msa0000590:intron 50.0%
CTGATCATGTTGAGGCCAAG+TGG + chr1_1:1739506-1739525 Msa0000590:intron 50.0%
! TCAAAGCAAGCAGGTTGAGG+AGG + chr1_1:1739837-1739856 Msa0000590:three_prime_UTR 50.0%
ACAATGTTGCAGCCTTGCTC+TGG - chr1_1:1740110-1740129 None:intergenic 50.0%
CTGGGTTCAAACCCGTACAA+AGG - chr1_1:1740176-1740195 None:intergenic 50.0%
CTTTGTACGGGTTTGAACCC+AGG + chr1_1:1740174-1740193 Msa0000590:intron 50.0%
GTTAAGGGGTAAGGAGTTGG+AGG - chr1_1:1740201-1740220 None:intergenic 50.0%
GGGTCAGAGTAAGATCAGGA+AGG - chr1_1:1740293-1740312 None:intergenic 50.0%
! ACTTGTGCACGCTTGCTACA+AGG + chr1_1:1740412-1740431 Msa0000590:three_prime_UTR 50.0%
CAGCCTAGTTGTCGCAAGTT+CGG + chr1_1:1740953-1740972 Msa0000590:three_prime_UTR 50.0%
ACCTTTCACGCGGTAGCATT+AGG + chr1_1:1741117-1741136 Msa0000590:intron 50.0%
GTTGCATGCGATCACGTCAA+AGG + chr1_1:1741260-1741279 Msa0000590:intron 50.0%
GGTATCACCTACACAATCGG+AGG + chr1_1:1741443-1741462 Msa0000590:three_prime_UTR 50.0%
! GACGCGGTGCTAAAGTAGGA+AGG - chr1_1:1734973-1734992 None:intergenic 55.0%
GGGGCAGAGATTCCAGAGAT+AGG + chr1_1:1735309-1735328 Msa0000590:five_prime_UTR 55.0%
GGGTGAGGCAGAAGGATGTT+AGG + chr1_1:1735336-1735355 Msa0000590:five_prime_UTR 55.0%
TCTTCCAGCCGGAGTGATTC+CGG + chr1_1:1735398-1735417 Msa0000590:five_prime_UTR 55.0%
CACTGCTACCGGAATCACTC+CGG - chr1_1:1735409-1735428 None:intergenic 55.0%
CTCTCACTGGAAAGCTCACC+AGG - chr1_1:1735485-1735504 None:intergenic 55.0%
GGTGAGCTTTCCAGTGAGAG+TGG + chr1_1:1735485-1735504 Msa0000590:five_prime_UTR 55.0%
TCCAGTGAGAGTGGGTCTGA+TGG + chr1_1:1735494-1735513 Msa0000590:five_prime_UTR 55.0%
ACCATCAGACCCACTCTCAC+TGG - chr1_1:1735498-1735517 None:intergenic 55.0%
TTCGCCCATTGTGTGGGATC+AGG + chr1_1:1735586-1735605 Msa0000590:five_prime_UTR 55.0%
GGAAGTGAAGGGGTCATCGA+AGG + chr1_1:1735616-1735635 Msa0000590:five_prime_UTR 55.0%
TAGGGTCTCCACAACACCAG+TGG + chr1_1:1735640-1735659 Msa0000590:five_prime_UTR 55.0%
! AAGAGCAGCCACTGGTGTTG+TGG - chr1_1:1735651-1735670 None:intergenic 55.0%
!! GATTTTGGCAGCTGAGGCAG+AGG - chr1_1:1735677-1735696 None:intergenic 55.0%
GACTGAGATCCGGAAGGAGA+AGG - chr1_1:1735806-1735825 None:intergenic 55.0%
GACAAGGACTGAGATCCGGA+AGG - chr1_1:1735812-1735831 None:intergenic 55.0%
CGGTGACAAGGACTGAGATC+CGG - chr1_1:1735816-1735835 None:intergenic 55.0%
TCTAGTGGCGATGGACATCC+TGG + chr1_1:1736133-1736152 Msa0000590:five_prime_UTR 55.0%
TGAGGTTGAGCTGGAGGTTC+AGG - chr1_1:1736271-1736290 None:intergenic 55.0%
!! GCTTCCCGCTGACTTCTCTT+AGG + chr1_1:1736452-1736471 Msa0000590:five_prime_UTR 55.0%
! CAGGGCACCTGAACTTCTTC+TGG + chr1_1:1737298-1737317 Msa0000590:CDS 55.0%
GGGCACCTGAACTTCTTCTG+GGG + chr1_1:1737300-1737319 Msa0000590:CDS 55.0%
GGCACCTGAACTTCTTCTGG+GGG + chr1_1:1737301-1737320 Msa0000590:CDS 55.0%
CCACCCAAAGTTGGAAGCCT+GGG - chr1_1:1737748-1737767 None:intergenic 55.0%
ACCACCCAAAGTTGGAAGCC+TGG - chr1_1:1737749-1737768 None:intergenic 55.0%
CTGTCCTGAGCATGTTGAGC+AGG - chr1_1:1738136-1738155 None:intergenic 55.0%
CTGCTCAACATGCTCAGGAC+AGG + chr1_1:1738134-1738153 Msa0000590:CDS 55.0%
! ACCCTTTAGAGGAGCAGCGA+CGG + chr1_1:1738350-1738369 Msa0000590:CDS 55.0%
TCCGTCGCTGCTCCTCTAAA+GGG - chr1_1:1738354-1738373 None:intergenic 55.0%
TTCCGTCGCTGCTCCTCTAA+AGG - chr1_1:1738355-1738374 None:intergenic 55.0%
TTTAGAGGAGCAGCGACGGA+AGG + chr1_1:1738354-1738373 Msa0000590:CDS 55.0%
GGAGTTGCAGCAGGGTGAAT+TGG + chr1_1:1738375-1738394 Msa0000590:CDS 55.0%
! CGGTTGGTGTGAAGTGGAAG+AGG + chr1_1:1738883-1738902 Msa0000590:three_prime_UTR 55.0%
GGGCCTTCTGTGCATTTCGT+TGG + chr1_1:1738904-1738923 Msa0000590:three_prime_UTR 55.0%
GGTAAGGAGTTGGAGGTCCT+GGG - chr1_1:1740194-1740213 None:intergenic 55.0%
GTAGCAAGCGTGCACAAGTC+AGG - chr1_1:1740411-1740430 None:intergenic 55.0%
GCCTAATGCTACCGCGTGAA+AGG - chr1_1:1741121-1741140 None:intergenic 55.0%
TTCACGCGGTAGCATTAGGC+AGG + chr1_1:1741121-1741140 Msa0000590:intron 55.0%
!! AGGAGTGCCTCCGATTGTGT+AGG - chr1_1:1741453-1741472 None:intergenic 55.0%
CCACTCCCCCCATTCCTAAC+CGG - chr1_1:1735290-1735309 None:intergenic 60.0%
CGGTTAGGAATGGGGGGAGT+GGG + chr1_1:1735288-1735307 Msa0000590:five_prime_UTR 60.0%
GGTTAGGAATGGGGGGAGTG+GGG + chr1_1:1735289-1735308 Msa0000590:five_prime_UTR 60.0%
GTTAGGAATGGGGGGAGTGG+GGG + chr1_1:1735290-1735309 Msa0000590:five_prime_UTR 60.0%
CGGAGTGATTCCGGTAGCAG+TGG + chr1_1:1735407-1735426 Msa0000590:five_prime_UTR 60.0%
ACCAAGGCTGCCACTGCTAC+CGG - chr1_1:1735420-1735439 None:intergenic 60.0%
GCAGAAAAACCACACCGGCG+AGG - chr1_1:1735443-1735462 None:intergenic 60.0%
! CTTTTCCTCTCCTGCGGAGG+AGG - chr1_1:1735560-1735579 None:intergenic 60.0%
AGAGGAGGAAGAGCAGCCAC+TGG - chr1_1:1735659-1735678 None:intergenic 60.0%
TTTGGCAGCTGAGGCAGAGG+AGG - chr1_1:1735674-1735693 None:intergenic 60.0%
CAGGAAGCTGAGCAGCCAGA+AGG + chr1_1:1735857-1735876 Msa0000590:five_prime_UTR 60.0%
AGCTGAGCAGCCAGAAGGTG+AGG + chr1_1:1735862-1735881 Msa0000590:five_prime_UTR 60.0%
CGCCACTAGACGTTCTCCCA+TGG - chr1_1:1736123-1736142 None:intergenic 60.0%
GGGAGAACGTCTAGTGGCGA+TGG + chr1_1:1736124-1736143 Msa0000590:five_prime_UTR 60.0%
CCCAGGCTTCCAACTTTGGG+TGG + chr1_1:1737745-1737764 Msa0000590:intron 60.0%
! TCTGACTAGCTGGCCTCCCT+TGG + chr1_1:1737774-1737793 Msa0000590:intron 60.0%
! CGCTGCTCCTCTAAAGGGTC+TGG - chr1_1:1738349-1738368 None:intergenic 60.0%
CGACGGAAGGAGTTGCAGCA+GGG + chr1_1:1738367-1738386 Msa0000590:CDS 60.0%
CAGCAGGGTGAATTGGGGAC+TGG + chr1_1:1738382-1738401 Msa0000590:CDS 60.0%
CAGGGTGAATTGGGGACTGG+TGG + chr1_1:1738385-1738404 Msa0000590:CDS 60.0%
GGGTAAGGAGTTGGAGGTCC+TGG - chr1_1:1740195-1740214 None:intergenic 60.0%
GGAGGGTTGGGTAGCACAAC+TGG - chr1_1:1740229-1740248 None:intergenic 60.0%
CCGGTTAGGAATGGGGGGAG+TGG + chr1_1:1735287-1735306 Msa0000590:five_prime_UTR 65.0%
GCTACCGGAATCACTCCGGC+TGG - chr1_1:1735405-1735424 None:intergenic 65.0%
TCCGGTAGCAGTGGCAGCCT+TGG + chr1_1:1735416-1735435 Msa0000590:five_prime_UTR 65.0%
AACCACACCGGCGAGGACCA+AGG - chr1_1:1735436-1735455 None:intergenic 65.0%
GCGACGGAAGGAGTTGCAGC+AGG + chr1_1:1738366-1738385 Msa0000590:CDS 65.0%
GTGGCAGCCTTGGTCCTCGC+CGG + chr1_1:1735426-1735445 Msa0000590:five_prime_UTR 70.0%
AGCCTTGGTCCTCGCCGGTG+TGG + chr1_1:1735431-1735450 Msa0000590:five_prime_UTR 70.0%
GTCTCGGTCTCCTCCTCCGC+AGG + chr1_1:1735547-1735566 Msa0000590:five_prime_UTR 70.0%
GGTCTCCTCCTCCGCAGGAG+AGG + chr1_1:1735552-1735571 Msa0000590:five_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 1734678 1741612 1734678 ID=Msa0000590;Name=Msa0000590
chr1_1 mRNA 1734678 1741612 1734678 ID=Msa0000590-mRNA-1;Parent=Msa0000590;Name=Msa0000590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=2177|1|1|1|0.44|0.4|10|1258|188
chr1_1 exon 1734678 1736833 1734678 ID=Msa0000590-mRNA-1:exon:264;Parent=Msa0000590-mRNA-1
chr1_1 exon 1737257 1737436 1737257 ID=Msa0000590-mRNA-1:exon:265;Parent=Msa0000590-mRNA-1
chr1_1 exon 1737580 1737668 1737580 ID=Msa0000590-mRNA-1:exon:266;Parent=Msa0000590-mRNA-1
chr1_1 exon 1737857 1737968 1737857 ID=Msa0000590-mRNA-1:exon:267;Parent=Msa0000590-mRNA-1
chr1_1 exon 1738049 1738155 1738049 ID=Msa0000590-mRNA-1:exon:268;Parent=Msa0000590-mRNA-1
chr1_1 exon 1738321 1738959 1738321 ID=Msa0000590-mRNA-1:exon:269;Parent=Msa0000590-mRNA-1
chr1_1 exon 1739835 1739917 1739835 ID=Msa0000590-mRNA-1:exon:270;Parent=Msa0000590-mRNA-1
chr1_1 exon 1740327 1740630 1740327 ID=Msa0000590-mRNA-1:exon:271;Parent=Msa0000590-mRNA-1
chr1_1 exon 1740944 1741092 1740944 ID=Msa0000590-mRNA-1:exon:272;Parent=Msa0000590-mRNA-1
chr1_1 exon 1741430 1741612 1741430 ID=Msa0000590-mRNA-1:exon:273;Parent=Msa0000590-mRNA-1
chr1_1 five_prime_UTR 1734678 1736833 1734678 ID=Msa0000590-mRNA-1:five_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1 five_prime_UTR 1737257 1737277 1737257 ID=Msa0000590-mRNA-1:five_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1 CDS 1737278 1737436 1737278 ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1 CDS 1737580 1737668 1737580 ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1 CDS 1737857 1737968 1737857 ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1 CDS 1738049 1738155 1738049 ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1 CDS 1738321 1738420 1738321 ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1 three_prime_UTR 1738421 1738959 1738421 ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1 three_prime_UTR 1739835 1739917 1739835 ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1 three_prime_UTR 1740327 1740630 1740327 ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1 three_prime_UTR 1740944 1741092 1740944 ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1 three_prime_UTR 1741430 1741612 1741430 ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1
Gene Sequence

>Msa0000590

ATGGTTGTCTATATGTTTATCAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTACTCAACAGCTATTGATATGTGGTCTCTTGGTTGTATAATGGCTGAGCTATTGTCTAAGGAACCGTTGTTCAATGGAAAAACGGAATTCGATCAACTTGACAAGATTTTCAGGATACTTGGCACTCCAAATGAAACAATATGGCCAGGCTTCTCAAAATTACCTGGAGTCAAGGTCAATTTTGTCAAGCACCAGTATAATCTTCTGCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTCCTAACTTATGACCCTGAAAAGCGGATCACGGCTGAAGCCGCTCTGAATCATGAATGGTTCCGTGAAGTTCCTCTTCCCAAGAGCAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGGCGGATGCGGAGAGTGTACAAGAGTCCAGACCCTTTAGAGGAGCAGCGACGGAAGGAGTTGCAGCAGGGTGAATTGGGGACTGGTGGAATTTTTGGTTAA
Protein sequence

>Msa0000590

MVVYMFIRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRVYKSPDPLEEQRRKELQQGELGTGGIFG*