AlfalfaGEDB | Msa0000590

M. sativa cultivar zhongmu-4 / Msa0000590

KEGG: K08818
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0060255 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564
PFAM: PF00069.28

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000590	sp\|Q7XUF4\|CDKG2_ORYSJ	76.064	188	44	1	1	188	524	710	1.56e-99	305

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000590	Msa0018210	0.825646	4.185065e-54	-8.615850e-47
Msa0000590	Msa0038870	0.824745	6.832609e-54	-8.615850e-47
Msa0000590	Msa0072170	0.814754	1.311418e-51	-8.615850e-47
Msa0000590	Msa0085720	0.810390	1.180694e-50	-8.615850e-47
Msa0000590	Msa0092440	0.811545	6.636235e-51	-8.615850e-47
Msa0000590	Msa0118540	0.834908	2.283269e-56	-8.615850e-47
Msa0000590	Msa0120540	0.802387	5.746311e-49	-8.615850e-47
Msa0000590	Msa0130520	0.804384	2.217226e-49	-8.615850e-47
Msa0000590	Msa0155340	0.807441	5.047484e-50	-8.615850e-47
Msa0000590	Msa0161070	-0.840447	8.648433e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000590	MtrunA17_Chr8g0377071	97.340	188	5	0	1	188	544	731	5.10e-132	386
Msa0000590	MtrunA17_Chr3g0122781	77.778	198	29	1	1	183	575	772	2.26e-103	314
Msa0000590	MtrunA17_Chr4g0057791	72.667	150	40	1	1	150	379	527	1.33e-73	230
Msa0000590	MtrunA17_Chr2g0293491	48.529	136	60	2	2	136	164	290	3.97e-40	137
Msa0000590	MtrunA17_Chr4g0051261	48.529	136	60	2	2	136	164	290	1.68e-39	136
Msa0000590	MtrunA17_Chr3g0130781	40.994	161	81	3	1	151	190	346	7.03e-35	127
Msa0000590	MtrunA17_Chr1g0187371	45.185	135	65	3	2	136	186	311	2.56e-34	123
Msa0000590	MtrunA17_Chr4g0002001	45.455	132	63	1	2	133	181	303	1.34e-32	119
Msa0000590	MtrunA17_Chr3g0131861	38.547	179	94	4	2	180	258	420	7.29e-30	114
Msa0000590	MtrunA17_Chr3g0093391	38.509	161	88	2	2	160	198	349	8.82e-30	114

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0000590	AT1G67580.1	87.234	188	24	0	1	188	565	752	2.45e-118	352
Msa0000590	AT1G67580.2	87.234	188	24	0	1	188	565	752	2.45e-118	352
Msa0000590	AT5G63370.2	69.799	149	45	0	1	149	327	475	3.30e-72	226
Msa0000590	AT5G63370.3	69.799	149	45	0	1	149	327	475	3.30e-72	226
Msa0000590	AT5G63370.7	69.799	149	45	0	1	149	461	609	2.11e-71	227
Msa0000590	AT5G63370.8	69.799	149	45	0	1	149	461	609	2.11e-71	227
Msa0000590	AT5G63370.4	69.799	149	45	0	1	149	461	609	2.11e-71	227
Msa0000590	AT5G63370.6	69.799	149	45	0	1	149	461	609	2.11e-71	227
Msa0000590	AT5G63370.1	69.799	149	45	0	1	149	461	609	2.11e-71	227
Msa0000590	AT1G20930.1	47.059	136	63	2	2	137	184	310	1.50e-38	134

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Find 314 sgRNAs with CRISPR-Local

Find 578 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGAGGGGATTGAAA+AGG	0.492100	1_1:-1734910	None:intergenic
AAAGAAGGTCAAAATGGAGA+AGG	0.584449	1_1:+1736420	Msa0000590:five_prime_UTR
AAAGAAGTTGCTGTTATTAA+TGG	0.234139	1_1:+1735362	Msa0000590:five_prime_UTR
AAAGAGAAATCGAACCTTCG+AGG	0.549351	1_1:-1734792	None:intergenic
AAAGTCAGAACATAAGAACC+GGG	0.658705	1_1:-1740470	None:intergenic
AAATATATCTTCTTCAAGAT+GGG	0.544572	1_1:+1735901	Msa0000590:five_prime_UTR
AAATTCGAAAGAGTATGATC+CGG	0.565209	1_1:+1735268	Msa0000590:five_prime_UTR
AACACTACCACTCATTTAAA+TGG	0.293995	1_1:-1741503	None:intergenic
AACAGTAACCTTAGATGCTG+TGG	0.512876	1_1:-1735780	None:intergenic
AACATAAGAACCGGGAATTT+TGG	0.226682	1_1:-1740462	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCTCCACGAAAAATATATAT+TGG	-	chr1_1:1734704-1734723	None:intergenic	30.0%
AAGAGAAGAGAATAACGAAA+AGG	-	chr1_1:1734769-1734788	None:intergenic	30.0%
GGTGAAATTGGATAATGAAA+GGG	-	chr1_1:1734881-1734900	None:intergenic	30.0%
TGGTGAAATTGGATAATGAA+AGG	-	chr1_1:1734882-1734901	None:intergenic	30.0%
TCATTATCCAATTTCACCAT+CGG	+	chr1_1:1734883-1734902	Msa0000590:five_prime_UTR	30.0%
AAAAATTGAGAAAAGGAGAG+GGG	-	chr1_1:1734923-1734942	None:intergenic	30.0%
CTAAAAATTGAGAAAAGGAG+AGG	-	chr1_1:1734925-1734944	None:intergenic	30.0%
TAAAGTAGGAAGGTAATGAT+TGG	-	chr1_1:1734963-1734982	None:intergenic	30.0%
ATCAGAAAAGGATGACTATA+TGG	+	chr1_1:1736162-1736181	Msa0000590:five_prime_UTR	30.0%
AATCTGAAGATGACATTGAT+AGG	+	chr1_1:1736236-1736255	Msa0000590:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	1734678	1741612	1734678	ID=Msa0000590;Name=Msa0000590
chr1_1	mRNA	1734678	1741612	1734678	ID=Msa0000590-mRNA-1;Parent=Msa0000590;Name=Msa0000590-mRNA-1;_AED=0.11;_eAED=0.11;_QI=2177\|1\|1\|1\|0.44\|0.4\|10\|1258\|188
chr1_1	exon	1734678	1736833	1734678	ID=Msa0000590-mRNA-1:exon:264;Parent=Msa0000590-mRNA-1
chr1_1	exon	1737257	1737436	1737257	ID=Msa0000590-mRNA-1:exon:265;Parent=Msa0000590-mRNA-1
chr1_1	exon	1737580	1737668	1737580	ID=Msa0000590-mRNA-1:exon:266;Parent=Msa0000590-mRNA-1
chr1_1	exon	1737857	1737968	1737857	ID=Msa0000590-mRNA-1:exon:267;Parent=Msa0000590-mRNA-1
chr1_1	exon	1738049	1738155	1738049	ID=Msa0000590-mRNA-1:exon:268;Parent=Msa0000590-mRNA-1
chr1_1	exon	1738321	1738959	1738321	ID=Msa0000590-mRNA-1:exon:269;Parent=Msa0000590-mRNA-1
chr1_1	exon	1739835	1739917	1739835	ID=Msa0000590-mRNA-1:exon:270;Parent=Msa0000590-mRNA-1
chr1_1	exon	1740327	1740630	1740327	ID=Msa0000590-mRNA-1:exon:271;Parent=Msa0000590-mRNA-1
chr1_1	exon	1740944	1741092	1740944	ID=Msa0000590-mRNA-1:exon:272;Parent=Msa0000590-mRNA-1
chr1_1	exon	1741430	1741612	1741430	ID=Msa0000590-mRNA-1:exon:273;Parent=Msa0000590-mRNA-1
chr1_1	five_prime_UTR	1734678	1736833	1734678	ID=Msa0000590-mRNA-1:five_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1	five_prime_UTR	1737257	1737277	1737257	ID=Msa0000590-mRNA-1:five_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1	CDS	1737278	1737436	1737278	ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1	CDS	1737580	1737668	1737580	ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1	CDS	1737857	1737968	1737857	ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1	CDS	1738049	1738155	1738049	ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1	CDS	1738321	1738420	1738321	ID=Msa0000590-mRNA-1:cds;Parent=Msa0000590-mRNA-1
chr1_1	three_prime_UTR	1738421	1738959	1738421	ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1	three_prime_UTR	1739835	1739917	1739835	ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1	three_prime_UTR	1740327	1740630	1740327	ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1	three_prime_UTR	1740944	1741092	1740944	ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1
chr1_1	three_prime_UTR	1741430	1741612	1741430	ID=Msa0000590-mRNA-1:three_prime_utr;Parent=Msa0000590-mRNA-1

Gene Sequence

>Msa0000590

ATGGTTGTCTATATGTTTATCAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTACTCAACAGCTATTGATATGTGGTCTCTTGGTTGTATAATGGCTGAGCTATTGTCTAAGGAACCGTTGTTCAATGGAAAAACGGAATTCGATCAACTTGACAAGATTTTCAGGATACTTGGCACTCCAAATGAAACAATATGGCCAGGCTTCTCAAAATTACCTGGAGTCAAGGTCAATTTTGTCAAGCACCAGTATAATCTTCTGCGTAAAAAGTTTCCTGCCACATCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTCCTAACTTATGACCCTGAAAAGCGGATCACGGCTGAAGCCGCTCTGAATCATGAATGGTTCCGTGAAGTTCCTCTTCCCAAGAGCAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGGCGGATGCGGAGAGTGTACAAGAGTCCAGACCCTTTAGAGGAGCAGCGACGGAAGGAGTTGCAGCAGGGTGAATTGGGGACTGGTGGAATTTTTGGTTAA

Protein sequence

>Msa0000590

MVVYMFIRAPELLLGAKQYSTAIDMWSLGCIMAELLSKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRVYKSPDPLEEQRRKELQQGELGTGGIFG*