AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1394290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394290 MtrunA17_Chr4g0071621 94.203 414 19 2 1 414 1 409 0.0 692
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1394290 AT5G57120.2 52.518 139 52 3 283 414 168 299 1.25e-32 125

Find 94 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTCTGTTCAGAGTTT+TGG 0.148789 tig0021786:-5743 None:intergenic
TCATCTTCTGTTCACTGGTT+AGG 0.212343 tig0021786:-5588 None:intergenic
AGAGATGTGCCGCAAATATT+TGG 0.244302 tig0021786:+7331 Msa1394290:CDS
AGAAAATATGAGTGAATCTA+AGG 0.253918 tig0021786:+8776 Msa1394290:CDS
ATAGGTCCCACGTTTCTTCT+TGG 0.273117 tig0021786:-11144 None:intergenic
TTGATACCTGATGGATTTGC+AGG 0.274555 tig0021786:-5648 None:intergenic
TTTAGAATCTTTCTTCTCTT+CGG 0.275506 tig0021786:-8670 None:intergenic
CCAATCAATTGCTCTTTACT+TGG 0.280678 tig0021786:+5779 Msa1394290:CDS
CGACCAATTTCTAAAGAAAA+TGG 0.291399 tig0021786:+8702 Msa1394290:CDS
TTAGAATCTTTCTTCTCTTC+GGG 0.299169 tig0021786:-8669 None:intergenic
TTGAAACAATATTGTTCATT+TGG 0.312566 tig0021786:+11337 Msa1394290:three_prime_UTR
CATCTTCTGTTCACTGGTTA+GGG 0.312876 tig0021786:-5587 None:intergenic
GCTTCTTCATTTGTTGCATC+GGG 0.340551 tig0021786:-8642 None:intergenic
ATAGATGCCAAAGTTGAAAA+TGG 0.340694 tig0021786:+8531 Msa1394290:CDS
TGCTTCTTCATTTGTTGCAT+CGG 0.340775 tig0021786:-8643 None:intergenic
ATTTGTTGATGAGAGGCTTC+AGG 0.356972 tig0021786:+10523 Msa1394290:CDS
AGAAGAAACGTGGGACCTAT+AGG 0.367724 tig0021786:+11147 Msa1394290:CDS
GAAGAAACGTGGGACCTATA+GGG 0.375824 tig0021786:+11148 Msa1394290:CDS
CCAAGTAAAGAGCAATTGAT+TGG 0.380181 tig0021786:-5779 None:intergenic
GGCTTCAGGATAACTCATAT+TGG 0.387596 tig0021786:+10537 Msa1394290:CDS
TGCTCTTTACTTGGAACGCT+CGG 0.400334 tig0021786:+5788 Msa1394290:CDS
CCACAGTTGGTGACTCCAAT+TGG 0.405640 tig0021786:-8335 None:intergenic
GATGGCGCCGAGAGTGGTTA+TGG 0.413963 tig0021786:+10652 Msa1394290:CDS
CGTTGAAATGCTGCCTTCAC+TGG 0.414815 tig0021786:-10479 None:intergenic
CTCAGCACCATTATCAACTT+TGG 0.421101 tig0021786:-8397 None:intergenic
ACAGATGCCAAAGTTGATAA+TGG 0.427492 tig0021786:+8390 Msa1394290:CDS
AGAAGATGAATTAGAGTGGT+TGG 0.430448 tig0021786:+5602 Msa1394290:five_prime_UTR
CTAATTCATCTTCTGTTCAC+TGG 0.437183 tig0021786:-5593 None:intergenic
CAAACGGGCTTTCTGAGAAT+GGG 0.440258 tig0021786:+8820 Msa1394290:CDS
GCAAAAGCAGAAGAAATTCT+TGG 0.442256 tig0021786:+10676 Msa1394290:CDS
TCAAACGGGCTTTCTGAGAA+TGG 0.443793 tig0021786:+8819 Msa1394290:CDS
GACCAATCAGCAAAATCAAA+CGG 0.445985 tig0021786:+8804 Msa1394290:CDS
ACCATGTTTCCAAATATTTG+CGG 0.446237 tig0021786:-7340 None:intergenic
GCTTCAGGATAACTCATATT+GGG 0.455100 tig0021786:+10538 Msa1394290:CDS
ATCAATAAGTCCACCCCTAT+AGG 0.468521 tig0021786:-11162 None:intergenic
GGATTTGCAGGCATACGAAA+AGG 0.471205 tig0021786:-5636 None:intergenic
TTATTCAGATGAGGAGTGAC+TGG 0.475043 tig0021786:+11211 Msa1394290:exon
GGAGTGAAAGTGAAGAGGGT+TGG 0.475645 tig0021786:-5678 None:intergenic
CGTATGCCTGCAAATCCATC+AGG 0.484539 tig0021786:+5642 Msa1394290:exon
AACAATAAGTCAAATATTGA+AGG 0.491836 tig0021786:+8453 Msa1394290:CDS
TTCATCTCTCTTCAGTAGCA+AGG 0.496685 tig0021786:+8019 Msa1394290:intron
ACCAATCAGCAAAATCAAAC+GGG 0.497516 tig0021786:+8805 Msa1394290:CDS
AGTTACAGAAAATAAAGTTA+AGG 0.498586 tig0021786:+8497 Msa1394290:CDS
GAAGATGAATTAGAGTGGTT+GGG 0.506631 tig0021786:+5603 Msa1394290:five_prime_UTR
AAGATAAGTCAATTAGTGAA+GGG 0.507809 tig0021786:+8595 Msa1394290:CDS
TAATGTGGAAGACAACCAAT+TGG 0.510929 tig0021786:+8320 Msa1394290:CDS
AAAGATAAGTCAATTAGTGA+AGG 0.516572 tig0021786:+8594 Msa1394290:CDS
CTGCAGGATGGCGCCGAGAG+TGG 0.518486 tig0021786:+10646 Msa1394290:intron
AATAATTAAACTTAACTGAG+TGG 0.520249 tig0021786:-11193 None:intergenic
GCTCTTTACTTGGAACGCTC+GGG 0.525363 tig0021786:+5789 Msa1394290:CDS
GATGAATTAGAGTGGTTGGG+TGG 0.531287 tig0021786:+5606 Msa1394290:five_prime_UTR
GGGGATGCAAAAGAGCAGAT+TGG 0.539281 tig0021786:+8615 Msa1394290:CDS
GGTTACAGAAAACAAAGTTA+AGG 0.544978 tig0021786:+8356 Msa1394290:CDS
ACAATAAGTCAAATATTGAA+GGG 0.546642 tig0021786:+8454 Msa1394290:CDS
GAAATTCTTGGTCAAGTCAG+AGG 0.547509 tig0021786:+10688 Msa1394290:CDS
GCCGCAAATATTTGGAAACA+TGG 0.552046 tig0021786:+7339 Msa1394290:CDS
TAAGTTTAATTATTCAGATG+AGG 0.552944 tig0021786:+11202 Msa1394290:CDS
AAGTAGAATTTGTTGATGAG+AGG 0.558430 tig0021786:+10516 Msa1394290:CDS
ATAATTAAACTTAACTGAGT+GGG 0.560601 tig0021786:-11192 None:intergenic
GATTTGCAGGCATACGAAAA+GGG 0.561553 tig0021786:-5635 None:intergenic
AGATAAGTCAATTAGTGAAG+GGG 0.564373 tig0021786:+8596 Msa1394290:CDS
AAGAAACGTGGGACCTATAG+GGG 0.566821 tig0021786:+11149 Msa1394290:CDS
TGATAACACCGGCTTTAGCA+TGG 0.570584 tig0021786:-11291 None:intergenic
CTTGAGCACCATGCTAAAGC+CGG 0.571283 tig0021786:+11283 Msa1394290:three_prime_UTR
TCTCTCTGAAGCTAAAATTG+AGG 0.572494 tig0021786:+5836 Msa1394290:CDS
TGAATCTGTTGTTGATAATG+TGG 0.576162 tig0021786:+8305 Msa1394290:CDS
GAAAATATGAGTGAATCTAA+GGG 0.576840 tig0021786:+8777 Msa1394290:CDS
GTTTCTTCTTGGTCTTCTCG+TGG 0.577810 tig0021786:-11133 None:intergenic
GACGAGGAGTGAAAGTGAAG+AGG 0.595704 tig0021786:-5683 None:intergenic
ACGAGGAGTGAAAGTGAAGA+GGG 0.599283 tig0021786:-5682 None:intergenic
CTTCTTCATTTGTTGCATCG+GGG 0.605174 tig0021786:-8641 None:intergenic
GGATAACTCATATTGGGCAA+AGG 0.615077 tig0021786:+10544 Msa1394290:CDS
AATATGAGTGAATCTAAGGG+AGG 0.616915 tig0021786:+8780 Msa1394290:CDS
TTCTTGGTCAAGTCAGAGGA+AGG 0.619626 tig0021786:+10692 Msa1394290:CDS
CAATAAGTCAAATATTGAAG+GGG 0.625288 tig0021786:+8455 Msa1394290:CDS
AGCAATCGAACCATGAAGAA+CGG 0.631910 tig0021786:+5717 Msa1394290:CDS
AAACGGGCTTTCTGAGAATG+GGG 0.639535 tig0021786:+8821 Msa1394290:CDS
GAGAAGACCAAGAAGAAACG+TGG 0.639718 tig0021786:+11137 Msa1394290:CDS
TATTCAGATGAGGAGTGACT+GGG 0.640238 tig0021786:+11212 Msa1394290:exon
ATGGTGCTGAGACAGAGAAA+CGG 0.644173 tig0021786:+8409 Msa1394290:CDS
ATGCAGAACGATAATACAGA+GGG 0.648262 tig0021786:+7290 Msa1394290:intron
CCAATTGGAGTCACCAACTG+TGG 0.648790 tig0021786:+8335 Msa1394290:CDS
AATAAGTCAAATATTGAAGG+GGG 0.651885 tig0021786:+8456 Msa1394290:CDS
GAACAGAAGATGAATTAGAG+TGG 0.654246 tig0021786:+5598 Msa1394290:five_prime_UTR
AGAAGACCAAGAAGAAACGT+GGG 0.657801 tig0021786:+11138 Msa1394290:CDS
AAACGTGGGACCTATAGGGG+TGG 0.658830 tig0021786:+11152 Msa1394290:CDS
ATGGTGCTGAGACAGAGAAG+AGG 0.660400 tig0021786:+8550 Msa1394290:CDS
CAGATGAAGAAACCAAACGC+AGG 0.662091 tig0021786:+8748 Msa1394290:CDS
AAAACATAAAGAATCATCTG+AGG 0.668418 tig0021786:+8878 Msa1394290:CDS
TTGCTTAACAAAACTTGACG+AGG 0.675556 tig0021786:-5699 None:intergenic
TCAGATGAGGAGTGACTGGG+AGG 0.685329 tig0021786:+11215 Msa1394290:exon
GATGCAGAACGATAATACAG+AGG 0.716767 tig0021786:+7289 Msa1394290:intron
TAATACAGAGGGTTCCACAG+TGG 0.729759 tig0021786:+7301 Msa1394290:CDS
CATCTCTTCTAGATCCACTG+TGG 0.742631 tig0021786:-7315 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTCTGAATTTTTTT+TGG + tig0021786:6690-6709 Msa1394290:intron 10.0%
!!! TATAATATTTTGAATTTTTC+TGG + tig0021786:6722-6741 Msa1394290:intron 10.0%
!!! GAATTATTTATTTTTTCTAA+GGG + tig0021786:8125-8144 Msa1394290:intron 10.0%
!! TTTAATTGAAAATAAAAAGA+GGG - tig0021786:9067-9086 None:intergenic 10.0%
!!! TTTTAATTGAAAATAAAAAG+AGG - tig0021786:9068-9087 None:intergenic 10.0%
!! TTTATTTATTATTTCATTCT+TGG + tig0021786:10325-10344 Msa1394290:intron 10.0%
!! ACATTATAAAACAATTATAT+TGG - tig0021786:11029-11048 None:intergenic 10.0%
!! TAAAAGTTGACATATTTATA+GGG - tig0021786:6433-6452 None:intergenic 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG - tig0021786:6493-6512 None:intergenic 15.0%
!!! TGAAGATTGAAAATTTTATA+GGG + tig0021786:6806-6825 Msa1394290:intron 15.0%
!!! CGAATTATTTATTTTTTCTA+AGG + tig0021786:8124-8143 Msa1394290:intron 15.0%
!!! TTATTGTTCTTTTTCTTTTT+GGG - tig0021786:8441-8460 None:intergenic 15.0%
!! TTAATTGAAAATAAAAAGAG+GGG - tig0021786:9066-9085 None:intergenic 15.0%
!!! GAAAATTAAATTTTATACGA+GGG - tig0021786:9157-9176 None:intergenic 15.0%
!!! TGAAAATTAAATTTTATACG+AGG - tig0021786:9158-9177 None:intergenic 15.0%
!! TACTTAAACTTAATTTAAGT+AGG + tig0021786:9529-9548 Msa1394290:intron 15.0%
!! AACTTAAATTCAGTTTAAAT+AGG - tig0021786:9758-9777 None:intergenic 15.0%
!! TTTAAGAGAATTTATACAAA+AGG + tig0021786:10001-10020 Msa1394290:intron 15.0%
!! TTAAGAGAATTTATACAAAA+GGG + tig0021786:10002-10021 Msa1394290:intron 15.0%
!!! AGTCAACTATTTAATTTAAA+GGG - tig0021786:10207-10226 None:intergenic 15.0%
!!! TAGTCAACTATTTAATTTAA+AGG - tig0021786:10208-10227 None:intergenic 15.0%
!! AGATAAACATATAAAGAAAT+TGG - tig0021786:10234-10253 None:intergenic 15.0%
!!! ATTTTTAGTCATATGTATTT+AGG + tig0021786:10381-10400 Msa1394290:intron 15.0%
!!! ATCAAAATTTTGTTACATTA+TGG + tig0021786:11310-11329 Msa1394290:three_prime_UTR 15.0%
!!! TATAATTGTAATGTTGCTTT+TGG + tig0021786:5935-5954 Msa1394290:intron 20.0%
!! AGAGTTTCTTAAAAATTCAT+GGG + tig0021786:6390-6409 Msa1394290:intron 20.0%
!! CTAAAAGTTGACATATTTAT+AGG - tig0021786:6434-6453 None:intergenic 20.0%
!!! AATATGTCAACTTTTAGTTT+TGG + tig0021786:6437-6456 Msa1394290:intron 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG - tig0021786:6494-6513 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG + tig0021786:6497-6516 Msa1394290:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + tig0021786:6774-6793 Msa1394290:intron 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + tig0021786:6775-6794 Msa1394290:intron 20.0%
!!! AAATTTTCAATCTTCACTTT+TGG - tig0021786:6802-6821 None:intergenic 20.0%
!!! GTGAAGATTGAAAATTTTAT+AGG + tig0021786:6805-6824 Msa1394290:intron 20.0%
!! GAAAAGTTGACATATTTATA+GGG + tig0021786:6866-6885 Msa1394290:intron 20.0%
!!! TTTTGGGTTAAATATGTTTT+TGG - tig0021786:6893-6912 None:intergenic 20.0%
!! TTTCTATCTAGTAATTGATA+TGG - tig0021786:7574-7593 None:intergenic 20.0%
!!! ACAGTATGAAAATTTTATAG+CGG - tig0021786:7654-7673 None:intergenic 20.0%
!!! TTGCTTAAAACAATTTTCTA+TGG + tig0021786:7703-7722 Msa1394290:intron 20.0%
!!! TTTTACAGCATTTTATAGTA+TGG + tig0021786:7769-7788 Msa1394290:intron 20.0%
!!! CTTATTGTTCTTTTTCTTTT+TGG - tig0021786:8442-8461 None:intergenic 20.0%
!! AACAATAAGTCAAATATTGA+AGG + tig0021786:8453-8472 Msa1394290:CDS 20.0%
!! ACAATAAGTCAAATATTGAA+GGG + tig0021786:8454-8473 Msa1394290:CDS 20.0%
!! AGTTACAGAAAATAAAGTTA+AGG + tig0021786:8497-8516 Msa1394290:CDS 20.0%
!!! TTTCTTTTTCATTTTACGTT+TGG - tig0021786:8577-8596 None:intergenic 20.0%
!! AAAGAATACGTATAAAAAGA+GGG - tig0021786:9039-9058 None:intergenic 20.0%
!! TAAAGAATACGTATAAAAAG+AGG - tig0021786:9040-9059 None:intergenic 20.0%
!!! ATTTGTGTTTTTCTTGTTTA+TGG + tig0021786:9367-9386 Msa1394290:intron 20.0%
!! TGAAACTATCATTATTGAAA+AGG + tig0021786:9835-9854 Msa1394290:intron 20.0%
!!! TTTATACAAAAGGGTAATTT+TGG + tig0021786:10011-10030 Msa1394290:intron 20.0%
!!! TTGTATTTCTTATACAGTTT+TGG + tig0021786:10358-10377 Msa1394290:intron 20.0%
!! ATTATCTAAGAAATGTGTAT+GGG + tig0021786:10614-10633 Msa1394290:intron 20.0%
!! GAAATAAAATTGTTTCACTA+CGG - tig0021786:10733-10752 None:intergenic 20.0%
!! TTTAATACAAGTGCAAATAT+TGG - tig0021786:10755-10774 None:intergenic 20.0%
!!! ACCATCTTATTTTACTTTTT+TGG + tig0021786:11077-11096 Msa1394290:intron 20.0%
!! ACCAAAAAAGTAAAATAAGA+TGG - tig0021786:11081-11100 None:intergenic 20.0%
!! ATAATTAAACTTAACTGAGT+GGG - tig0021786:11195-11214 None:intergenic 20.0%
!! AATAATTAAACTTAACTGAG+TGG - tig0021786:11196-11215 None:intergenic 20.0%
!! TAAGTTTAATTATTCAGATG+AGG + tig0021786:11202-11221 Msa1394290:CDS 20.0%
!!! TAACAAAATTTTGATAACAC+CGG - tig0021786:11305-11324 None:intergenic 20.0%
!! TTGAAACAATATTGTTCATT+TGG + tig0021786:11337-11356 Msa1394290:three_prime_UTR 20.0%
!!! TTTTTCATTGTTTTTCTGCT+AGG + tig0021786:5964-5983 Msa1394290:intron 25.0%
! ACTTTAGTATATTAAGAGGA+TGG + tig0021786:6217-6236 Msa1394290:intron 25.0%
! CTTCATTCATGAAAAAAGTT+CGG + tig0021786:6319-6338 Msa1394290:intron 25.0%
! CAGAGTTTCTTAAAAATTCA+TGG + tig0021786:6389-6408 Msa1394290:intron 25.0%
!!! TCATGGGTTAAATATGTTTT+TGG + tig0021786:6406-6425 Msa1394290:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - tig0021786:6835-6854 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - tig0021786:6834-6853 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG + tig0021786:6834-6853 Msa1394290:intron 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG + tig0021786:6835-6854 Msa1394290:intron 25.0%
! CGAAAAGTTGACATATTTAT+AGG + tig0021786:6865-6884 Msa1394290:intron 25.0%
! ATTTAACCCAAAATTCATTG+CGG + tig0021786:6900-6919 Msa1394290:intron 25.0%
! TAAGTAATTATGTGCATACA+TGG + tig0021786:7128-7147 Msa1394290:intron 25.0%
! TGTACTGTGTAGTTTATAAT+CGG - tig0021786:7417-7436 None:intergenic 25.0%
!! TAATTGATATGGTTGATACA+TGG - tig0021786:7563-7582 None:intergenic 25.0%
!! GCTATAAAATTTTCATACTG+TGG + tig0021786:7653-7672 Msa1394290:intron 25.0%
!! ATATTGGCAATTTTATGTAG+CGG + tig0021786:7677-7696 Msa1394290:intron 25.0%
!! CTTAAAACAATTTTCTATGG+CGG + tig0021786:7706-7725 Msa1394290:intron 25.0%
! AATCTGATATTGAGAACTAT+GGG + tig0021786:7887-7906 Msa1394290:intron 25.0%
! ACAGAAATGACAATACTAAT+TGG - tig0021786:7962-7981 None:intergenic 25.0%
! ATGTTATAAACAAGAGAGAT+AGG - tig0021786:8104-8123 None:intergenic 25.0%
!! TTTCTTTTTCTTTTTTCCCT+TGG - tig0021786:8271-8290 None:intergenic 25.0%
! CAATAAGTCAAATATTGAAG+GGG + tig0021786:8455-8474 Msa1394290:CDS 25.0%
! AATAAGTCAAATATTGAAGG+GGG + tig0021786:8456-8475 Msa1394290:CDS 25.0%
! AAAGATAAGTCAATTAGTGA+AGG + tig0021786:8594-8613 Msa1394290:CDS 25.0%
! AAGATAAGTCAATTAGTGAA+GGG + tig0021786:8595-8614 Msa1394290:CDS 25.0%
!! TTTAGAATCTTTCTTCTCTT+CGG - tig0021786:8673-8692 None:intergenic 25.0%
!!! TCACCATTTTCTTTAGAAAT+TGG - tig0021786:8708-8727 None:intergenic 25.0%
!!! TTCTTCATCTGCTTTTATTT+CGG - tig0021786:8739-8758 None:intergenic 25.0%
! AGAAAATATGAGTGAATCTA+AGG + tig0021786:8776-8795 Msa1394290:CDS 25.0%
! GAAAATATGAGTGAATCTAA+GGG + tig0021786:8777-8796 Msa1394290:CDS 25.0%
! AAAACATAAAGAATCATCTG+AGG + tig0021786:8878-8897 Msa1394290:CDS 25.0%
! AAGAATACGTATAAAAAGAG+GGG - tig0021786:9038-9057 None:intergenic 25.0%
! AAGAAATTTCGAAGCAAAAA+AGG + tig0021786:9271-9290 Msa1394290:intron 25.0%
! CATGTAAACTTAGTTTAAGT+AGG + tig0021786:9480-9499 Msa1394290:intron 25.0%
! CATGTAAACTTAGTTTAAGT+AGG + tig0021786:9480-9499 Msa1394290:intron 25.0%
! TTACATAGAATCATTGAACA+AGG - tig0021786:9618-9637 None:intergenic 25.0%
! ATTCTATGTAATCTCAGTTT+AGG + tig0021786:9627-9646 Msa1394290:intron 25.0%
! CATGTAAACTTAGTTTAAGT+AGG + tig0021786:9480-9499 Msa1394290:intron 25.0%
! TATTCAAGAATTTATAGCAC+AGG - tig0021786:10137-10156 None:intergenic 25.0%
! TAAAACTTACCTAACATTTC+AGG + tig0021786:10162-10181 Msa1394290:intron 25.0%
! AACATAAATCTTAGTTTCAG+TGG - tig0021786:10419-10438 None:intergenic 25.0%
! ACTGAAACTAAGATTTATGT+TGG + tig0021786:10418-10437 Msa1394290:intron 25.0%
! ATTTCTTAGATAATGCAACT+GGG - tig0021786:10608-10627 None:intergenic 25.0%
! CATTATCTAAGAAATGTGTA+TGG + tig0021786:10613-10632 Msa1394290:intron 25.0%
! TTCATAGACAAGCTATAAAT+AGG + tig0021786:10837-10856 Msa1394290:intron 25.0%
!! TCTATGGAAAATTTGTTTGA+TGG + tig0021786:10904-10923 Msa1394290:intron 25.0%
!! CTATGGAAAATTTGTTTGAT+GGG + tig0021786:10905-10924 Msa1394290:intron 25.0%
! GATATATGTGTGAAAAATCT+GGG - tig0021786:10956-10975 None:intergenic 25.0%
!! CAGATTTTTCACACATATAT+CGG + tig0021786:10955-10974 Msa1394290:intron 25.0%
! GGTTTACAAAAATGAATGAA+AGG - tig0021786:10983-11002 None:intergenic 25.0%
! AGCTGAATAAGACAATAAAA+GGG - tig0021786:11004-11023 None:intergenic 25.0%
! TAGCTGAATAAGACAATAAA+AGG - tig0021786:11005-11024 None:intergenic 25.0%
!!! TGTTTTGATTGCATATCAAA+TGG + tig0021786:11443-11462 Msa1394290:three_prime_UTR 25.0%
!!! ACTGGTTAGGGTTTATTTTA+GGG - tig0021786:5578-5597 None:intergenic 30.0%
! TTCAGAGAGAAACTTTTTGA+GGG - tig0021786:5826-5845 None:intergenic 30.0%
! GATTGAATTTAGGATCTGTT+TGG + tig0021786:6019-6038 Msa1394290:intron 30.0%
! AATTTAGGATCTGTTTGGAT+TGG + tig0021786:6024-6043 Msa1394290:intron 30.0%
GCTTATAGCTAATGTGAAAA+AGG + tig0021786:6180-6199 Msa1394290:intron 30.0%
TGTGAAAAAGGATATCACTT+TGG + tig0021786:6192-6211 Msa1394290:intron 30.0%
GGTGACTTTAGTATATTAAG+AGG + tig0021786:6213-6232 Msa1394290:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG - tig0021786:6821-6840 None:intergenic 30.0%
TTATAGGGACTAAAAGTTGA+AGG + tig0021786:6821-6840 Msa1394290:intron 30.0%
ACATTCGCAATGCAAATATA+TGG - tig0021786:7031-7050 None:intergenic 30.0%
! AGAATCTGTTTTACTCAGTT+TGG - tig0021786:7094-7113 None:intergenic 30.0%
TCACCGTTCAATAACAAATT+TGG + tig0021786:7226-7245 Msa1394290:intron 30.0%
!! CAGCCAAATTTGTTATTGAA+CGG - tig0021786:7232-7251 None:intergenic 30.0%
ACCATGTTTCCAAATATTTG+CGG - tig0021786:7343-7362 None:intergenic 30.0%
! AATCTTGAAAGTGTAGAACA+AGG - tig0021786:7381-7400 None:intergenic 30.0%
! GTTCTACACTTTCAAGATTT+TGG + tig0021786:7382-7401 Msa1394290:intron 30.0%
CAATTACTAGATAGAAAGCT+TGG + tig0021786:7577-7596 Msa1394290:intron 30.0%
! ATTTTCATACTGTGGCATAT+TGG + tig0021786:7661-7680 Msa1394290:intron 30.0%
AAATGCTATAGCAAGATCAT+AGG - tig0021786:7843-7862 None:intergenic 30.0%
CAATCTGATATTGAGAACTA+TGG + tig0021786:7886-7905 Msa1394290:intron 30.0%
AATGACAATACTAATTGGTG+TGG - tig0021786:7957-7976 None:intergenic 30.0%
TTTCAATTACTGCTAATTGC+AGG + tig0021786:8216-8235 Msa1394290:intron 30.0%
! GGATTTTTCCTCATCATTTT+TGG - tig0021786:8250-8269 None:intergenic 30.0%
AAATGATGAGGAAAAATCCA+AGG + tig0021786:8251-8270 Msa1394290:CDS 30.0%
AATGATGAGGAAAAATCCAA+GGG + tig0021786:8252-8271 Msa1394290:CDS 30.0%
!! TGAATCTGTTGTTGATAATG+TGG + tig0021786:8305-8324 Msa1394290:CDS 30.0%
GGTTACAGAAAACAAAGTTA+AGG + tig0021786:8356-8375 Msa1394290:CDS 30.0%
!!! GTTCTTTTTCTTTTTGGGTT+TGG - tig0021786:8436-8455 None:intergenic 30.0%
! ATTTTCAACTTTGGCATCTA+TGG - tig0021786:8532-8551 None:intergenic 30.0%
ATAGATGCCAAAGTTGAAAA+TGG + tig0021786:8531-8550 Msa1394290:CDS 30.0%
AGATAAGTCAATTAGTGAAG+GGG + tig0021786:8596-8615 Msa1394290:CDS 30.0%
TTAGAATCTTTCTTCTCTTC+GGG - tig0021786:8672-8691 None:intergenic 30.0%
! CGACCAATTTCTAAAGAAAA+TGG + tig0021786:8702-8721 Msa1394290:CDS 30.0%
! ATTTTCTATTTTCCTGCGTT+TGG - tig0021786:8763-8782 None:intergenic 30.0%
AATTACACCCTTTATAATCC+TGG + tig0021786:9107-9126 Msa1394290:intron 30.0%
! AAGACGGAAGATAGATTTTT+GGG - tig0021786:9210-9229 None:intergenic 30.0%
! AAAGACGGAAGATAGATTTT+TGG - tig0021786:9211-9230 None:intergenic 30.0%
!! CTTTGAAATCTTGCATAGAA+GGG - tig0021786:9254-9273 None:intergenic 30.0%
!! TCTTTGAAATCTTGCATAGA+AGG - tig0021786:9255-9274 None:intergenic 30.0%
AATTTCGAAGCAAAAAAGGT+TGG + tig0021786:9275-9294 Msa1394290:intron 30.0%
ATCGATTATGTTCTTGTCAT+GGG + tig0021786:9314-9333 Msa1394290:intron 30.0%
!! TCCTAATTCTAAGCTTTTTC+TGG + tig0021786:9339-9358 Msa1394290:intron 30.0%
!! CCTAATTCTAAGCTTTTTCT+GGG + tig0021786:9340-9359 Msa1394290:intron 30.0%
AGGTATGTACATGTAAACTT+AGG + tig0021786:9647-9666 Msa1394290:intron 30.0%
TGATGTTCAATCAATCTATG+TGG - tig0021786:9927-9946 None:intergenic 30.0%
ACATAGATTGATTGAACATC+AGG + tig0021786:9926-9945 Msa1394290:intron 30.0%
AGTGACTATGAATGAAATCA+AGG + tig0021786:9977-9996 Msa1394290:intron 30.0%
ACACAATAACCTGAAATGTT+AGG - tig0021786:10174-10193 None:intergenic 30.0%
!! AAGTAGAATTTGTTGATGAG+AGG + tig0021786:10516-10535 Msa1394290:CDS 30.0%
! TGATATGTTTTCCATGCATT+TGG + tig0021786:10577-10596 Msa1394290:intron 30.0%
CATTTCTTAGATAATGCAAC+TGG - tig0021786:10609-10628 None:intergenic 30.0%
! TTTGTCTAGTGAGTTTTCTA+TGG + tig0021786:10888-10907 Msa1394290:intron 30.0%
CGATATATGTGTGAAAAATC+TGG - tig0021786:10957-10976 None:intergenic 30.0%
ACACCAAATATTTCTCTTAC+AGG + tig0021786:11102-11121 Msa1394290:intron 30.0%
CACCAAATATTTCTCTTACA+GGG + tig0021786:11103-11122 Msa1394290:intron 30.0%
ATCCCTGTAAGAGAAATATT+TGG - tig0021786:11108-11127 None:intergenic 30.0%
! CAAAATTTTGCTACATTACG+AGG + tig0021786:11410-11429 Msa1394290:three_prime_UTR 30.0%
!! CACTGGTTAGGGTTTATTTT+AGG - tig0021786:5579-5598 None:intergenic 35.0%
CTAATTCATCTTCTGTTCAC+TGG - tig0021786:5596-5615 None:intergenic 35.0%
GAACAGAAGATGAATTAGAG+TGG + tig0021786:5598-5617 Msa1394290:five_prime_UTR 35.0%
AGAAGATGAATTAGAGTGGT+TGG + tig0021786:5602-5621 Msa1394290:five_prime_UTR 35.0%
GAAGATGAATTAGAGTGGTT+GGG + tig0021786:5603-5622 Msa1394290:five_prime_UTR 35.0%
! GGAATTCTTTTGATACCTGA+TGG - tig0021786:5660-5679 None:intergenic 35.0%
TTGCTTAACAAAACTTGACG+AGG - tig0021786:5702-5721 None:intergenic 35.0%
CCAAGTAAAGAGCAATTGAT+TGG - tig0021786:5782-5801 None:intergenic 35.0%
CCAATCAATTGCTCTTTACT+TGG + tig0021786:5779-5798 Msa1394290:CDS 35.0%
!! GAGAAACTTTTTGAGGGTTT+TGG - tig0021786:5820-5839 None:intergenic 35.0%
! CTTCAGAGAGAAACTTTTTG+AGG - tig0021786:5827-5846 None:intergenic 35.0%
!! TCTCTCTGAAGCTAAAATTG+AGG + tig0021786:5836-5855 Msa1394290:CDS 35.0%
! TCTGAAGCTAAAATTGAGGT+GGG + tig0021786:5840-5859 Msa1394290:intron 35.0%
TCACTTTCCATTCATTCGTT+TGG + tig0021786:5863-5882 Msa1394290:intron 35.0%
! GAAGCATCTCGATTGAATTT+AGG + tig0021786:6009-6028 Msa1394290:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG - tig0021786:6127-6146 None:intergenic 35.0%
GCTGTTTACATGAGCTATTT+CGG - tig0021786:6162-6181 None:intergenic 35.0%
TGCGAATGTCATCTAAATTG+AGG + tig0021786:7042-7061 Msa1394290:intron 35.0%
TTATGTGCATACATGGCAAA+AGG + tig0021786:7135-7154 Msa1394290:intron 35.0%
TATGGAATACAGAGGAATTC+TGG - tig0021786:7191-7210 None:intergenic 35.0%
!! TTTGTTATTGAACGGTGAGA+AGG - tig0021786:7224-7243 None:intergenic 35.0%
CGTTCAATAACAAATTTGGC+TGG + tig0021786:7230-7249 Msa1394290:intron 35.0%
TATCGTTCTGCATCAACAAA+AGG - tig0021786:7283-7302 None:intergenic 35.0%
ATGCAGAACGATAATACAGA+GGG + tig0021786:7290-7309 Msa1394290:intron 35.0%
AGTGTACAGTTTACAGGATT+AGG - tig0021786:7445-7464 None:intergenic 35.0%
! TAAGAACAGTTTTGCACTAG+TGG - tig0021786:7480-7499 None:intergenic 35.0%
TGTATAAAGTACAGTGTGAC+TGG + tig0021786:7513-7532 Msa1394290:intron 35.0%
! GTGCTACTAACAATTATGAC+TGG - tig0021786:7604-7623 None:intergenic 35.0%
GGTCTGAAGAATACAAATGT+AGG - tig0021786:7804-7823 None:intergenic 35.0%
ATAGCAAGATCATAGGTAGT+GGG - tig0021786:7836-7855 None:intergenic 35.0%
TATAGCAAGATCATAGGTAG+TGG - tig0021786:7837-7856 None:intergenic 35.0%
! TGATCTTGCTATAGCATTTG+TGG + tig0021786:7844-7863 Msa1394290:intron 35.0%
! GATCTTGCTATAGCATTTGT+GGG + tig0021786:7845-7864 Msa1394290:intron 35.0%
! ATCTTGCTATAGCATTTGTG+GGG + tig0021786:7846-7865 Msa1394290:intron 35.0%
! ATCAATGATCAAAAAGCGCA+AGG + tig0021786:8056-8075 Msa1394290:CDS 35.0%
! ACAAGAGAGATAGGTTTTCA+AGG - tig0021786:8095-8114 None:intergenic 35.0%
TCGTGGCGATTAAATCTTAA+TGG + tig0021786:8188-8207 Msa1394290:intron 35.0%
TGGCGATTAAATCTTAATGG+TGG + tig0021786:8191-8210 Msa1394290:intron 35.0%
TAATGTGGAAGACAACCAAT+TGG + tig0021786:8320-8339 Msa1394290:CDS 35.0%
! TTGTTTTCTGTAACCACAGT+TGG - tig0021786:8351-8370 None:intergenic 35.0%
!! ACAGATGCCAAAGTTGATAA+TGG + tig0021786:8390-8409 Msa1394290:CDS 35.0%
! TGCTTCTTCATTTGTTGCAT+CGG - tig0021786:8646-8665 None:intergenic 35.0%
AATATGAGTGAATCTAAGGG+AGG + tig0021786:8780-8799 Msa1394290:CDS 35.0%
GACCAATCAGCAAAATCAAA+CGG + tig0021786:8804-8823 Msa1394290:CDS 35.0%
ACCAATCAGCAAAATCAAAC+GGG + tig0021786:8805-8824 Msa1394290:CDS 35.0%
ATTCTCTCTGAATCTGTACA+TGG + tig0021786:8920-8939 Msa1394290:intron 35.0%
! ATTTCAAAGTGCCTATCCAT+TGG - tig0021786:8957-8976 None:intergenic 35.0%
GGTGTAACCAGGATTATAAA+GGG - tig0021786:9117-9136 None:intergenic 35.0%
! AGGGTAATTTTGTCATTCTG+GGG - tig0021786:9138-9157 None:intergenic 35.0%
! GAGGGTAATTTTGTCATTCT+GGG - tig0021786:9139-9158 None:intergenic 35.0%
AAAGTCTCTTCCTTCTTTCT+TGG + tig0021786:9179-9198 Msa1394290:intron 35.0%
GATCGATTATGTTCTTGTCA+TGG + tig0021786:9313-9332 Msa1394290:intron 35.0%
CCCAGAAAAAGCTTAGAATT+AGG - tig0021786:9343-9362 None:intergenic 35.0%
TTTAGATGCACACTTAAACG+CGG - tig0021786:9588-9607 None:intergenic 35.0%
CGGTTTCAATTTACATGTTG+AGG - tig0021786:9783-9802 None:intergenic 35.0%
TTGTTCAACAGCATGTACAA+CGG - tig0021786:9803-9822 None:intergenic 35.0%
ATTCACACCTCAAATATTGC+TGG - tig0021786:10072-10091 None:intergenic 35.0%
!! TTTCAGGTTATTGTGTTTGC+TGG + tig0021786:10178-10197 Msa1394290:intron 35.0%
TTCTCTCATAAATGTTTGCC+TGG + tig0021786:10273-10292 Msa1394290:intron 35.0%
CTTAGTTTCAGTGGTGAAAT+TGG - tig0021786:10410-10429 None:intergenic 35.0%
GCTTCAGGATAACTCATATT+GGG + tig0021786:10538-10557 Msa1394290:CDS 35.0%
GCAAAAGCAGAAGAAATTCT+TGG + tig0021786:10676-10695 Msa1394290:CDS 35.0%
CTATAAATAGGTCATGCTGT+TGG + tig0021786:10849-10868 Msa1394290:intron 35.0%
! CATCTTCTGTTCACTGGTTA+GGG - tig0021786:5590-5609 None:intergenic 40.0%
! TCATCTTCTGTTCACTGGTT+AGG - tig0021786:5591-5610 None:intergenic 40.0%
GATTTGCAGGCATACGAAAA+GGG - tig0021786:5638-5657 None:intergenic 40.0%
!! TTGATACCTGATGGATTTGC+AGG - tig0021786:5651-5670 None:intergenic 40.0%
AGCAATCGAACCATGAAGAA+CGG + tig0021786:5717-5736 Msa1394290:CDS 40.0%
! CTGCTTCTGTTCAGAGTTTT+GGG - tig0021786:5745-5764 None:intergenic 40.0%
! TCTGCTTCTGTTCAGAGTTT+TGG - tig0021786:5746-5765 None:intergenic 40.0%
!! CTCTGAAGCTAAAATTGAGG+TGG + tig0021786:5839-5858 Msa1394290:intron 40.0%
ACAGTGTCCAAACGAATGAA+TGG - tig0021786:5873-5892 None:intergenic 40.0%
TACACATCTGTGAAACTGCT+TGG + tig0021786:6071-6090 Msa1394290:intron 40.0%
AAACTGCTTGGAAGAGCTTA+TGG + tig0021786:6083-6102 Msa1394290:intron 40.0%
TCCAGACAAGAGAGAATGAT+CGG + tig0021786:6261-6280 Msa1394290:intron 40.0%
! TCAGCACCGCAATGAATTTT+GGG - tig0021786:6909-6928 None:intergenic 40.0%
GATGCAGAACGATAATACAG+AGG + tig0021786:7289-7308 Msa1394290:intron 40.0%
AGAGATGTGCCGCAAATATT+TGG + tig0021786:7331-7350 Msa1394290:CDS 40.0%
GCCGCAAATATTTGGAAACA+TGG + tig0021786:7339-7358 Msa1394290:CDS 40.0%
TGTAGAACAAGGCTAAGGTT+GGG - tig0021786:7370-7389 None:intergenic 40.0%
! GAAAGTGTAGAACAAGGCTA+AGG - tig0021786:7375-7394 None:intergenic 40.0%
CTTGTCAGTGTACAGTTTAC+AGG - tig0021786:7451-7470 None:intergenic 40.0%
TAGCAGTGAAAAGTAGCAGT+TGG + tig0021786:7628-7647 Msa1394290:intron 40.0%
ATGCTGTAAAATAGCAGCCA+TGG - tig0021786:7760-7779 None:intergenic 40.0%
CTGATATTGAGAACTATGGG+AGG + tig0021786:7890-7909 Msa1394290:intron 40.0%
TTCATCTCTCTTCAGTAGCA+AGG + tig0021786:8019-8038 Msa1394290:intron 40.0%
TTCTCTTGCTTCTTGAATCG+TGG + tig0021786:8171-8190 Msa1394290:intron 40.0%
ATTACTGCTAATTGCAGGTG+TGG + tig0021786:8221-8240 Msa1394290:intron 40.0%
TGTGGACTCCAAAAATGATG+AGG + tig0021786:8239-8258 Msa1394290:CDS 40.0%
CTCAGCACCATTATCAACTT+TGG - tig0021786:8400-8419 None:intergenic 40.0%
! CTCAGCACCATTTTCAACTT+TGG - tig0021786:8541-8560 None:intergenic 40.0%
! CTTCTTCATTTGTTGCATCG+GGG - tig0021786:8644-8663 None:intergenic 40.0%
! GCTTCTTCATTTGTTGCATC+GGG - tig0021786:8645-8664 None:intergenic 40.0%
GGGTGTAACCAGGATTATAA+AGG - tig0021786:9118-9137 None:intergenic 40.0%
! CGAGGGTAATTTTGTCATTC+TGG - tig0021786:9140-9159 None:intergenic 40.0%
TTGGGTGTAACCAAGAAAGA+AGG - tig0021786:9192-9211 None:intergenic 40.0%
TCTGCTTGAAGAAGGAAAGA+CGG - tig0021786:9226-9245 None:intergenic 40.0%
GGGATAAATCTGCTTGAAGA+AGG - tig0021786:9234-9253 None:intergenic 40.0%
AGGATCGTTTGATCGTTTGT+GGG + tig0021786:9946-9965 Msa1394290:intron 40.0%
GGTGTAACCAGCAATATTTG+AGG + tig0021786:10062-10081 Msa1394290:intron 40.0%
AGAATTTATAGCACAGGCTG+AGG - tig0021786:10131-10150 None:intergenic 40.0%
ATTGCAGCAAAAACCAGTGA+AGG + tig0021786:10466-10485 Msa1394290:intron 40.0%
! ATTTGTTGATGAGAGGCTTC+AGG + tig0021786:10523-10542 Msa1394290:CDS 40.0%
GGCTTCAGGATAACTCATAT+TGG + tig0021786:10537-10556 Msa1394290:CDS 40.0%
GGATAACTCATATTGGGCAA+AGG + tig0021786:10544-10563 Msa1394290:CDS 40.0%
! TTTTGCACCATAACCACTCT+CGG - tig0021786:10662-10681 None:intergenic 40.0%
GAAATTCTTGGTCAAGTCAG+AGG + tig0021786:10688-10707 Msa1394290:CDS 40.0%
AGAAGACCAAGAAGAAACGT+GGG + tig0021786:11138-11157 Msa1394290:CDS 40.0%
ATCAATAAGTCCACCCCTAT+AGG - tig0021786:11165-11184 None:intergenic 40.0%
TTATTCAGATGAGGAGTGAC+TGG + tig0021786:11211-11230 Msa1394290:exon 40.0%
TATTCAGATGAGGAGTGACT+GGG + tig0021786:11212-11231 Msa1394290:exon 40.0%
GATGAATTAGAGTGGTTGGG+TGG + tig0021786:5606-5625 Msa1394290:five_prime_UTR 45.0%
GGATTTGCAGGCATACGAAA+AGG - tig0021786:5639-5658 None:intergenic 45.0%
ACGAGGAGTGAAAGTGAAGA+GGG - tig0021786:5685-5704 None:intergenic 45.0%
!!! GTTTTGGGTTCCGTTCTTCA+TGG - tig0021786:5730-5749 None:intergenic 45.0%
TGCTCTTTACTTGGAACGCT+CGG + tig0021786:5788-5807 Msa1394290:CDS 45.0%
ACCGATCATTCTCTCTTGTC+TGG - tig0021786:6265-6284 None:intergenic 45.0%
! CTCAGCACCGCAATGAATTT+TGG - tig0021786:6910-6929 None:intergenic 45.0%
! CAAAATTCATTGCGGTGCTG+AGG + tig0021786:6908-6927 Msa1394290:intron 45.0%
GACACGGATATGGAATACAG+AGG - tig0021786:7199-7218 None:intergenic 45.0%
TGAGAAGGAAGACACGGATA+TGG - tig0021786:7209-7228 None:intergenic 45.0%
TAATACAGAGGGTTCCACAG+TGG + tig0021786:7301-7320 Msa1394290:CDS 45.0%
CATCTCTTCTAGATCCACTG+TGG - tig0021786:7318-7337 None:intergenic 45.0%
GTGTAGAACAAGGCTAAGGT+TGG - tig0021786:7371-7390 None:intergenic 45.0%
TGGCCATTGTCTCATGTTGT+TGG + tig0021786:7533-7552 Msa1394290:intron 45.0%
GGCCATTGTCTCATGTTGTT+GGG + tig0021786:7534-7553 Msa1394290:intron 45.0%
GCCATTGTCTCATGTTGTTG+GGG + tig0021786:7535-7554 Msa1394290:intron 45.0%
TCCCCAACAACATGAGACAA+TGG - tig0021786:7539-7558 None:intergenic 45.0%
CTGTAAAATAGCAGCCATGG+CGG - tig0021786:7757-7776 None:intergenic 45.0%
!! ATAGGTAGTGGGATAACTGC+TGG - tig0021786:7825-7844 None:intergenic 45.0%
TGCTATAGCATTTGTGGGGT+TGG + tig0021786:7850-7869 Msa1394290:intron 45.0%
! ATGGTGCTGAGACAGAGAAA+CGG + tig0021786:8409-8428 Msa1394290:CDS 45.0%
CAGATGAAGAAACCAAACGC+AGG + tig0021786:8748-8767 Msa1394290:CDS 45.0%
!! GCCCGTTTGATTTTGCTGAT+TGG - tig0021786:8809-8828 None:intergenic 45.0%
! TCAAACGGGCTTTCTGAGAA+TGG + tig0021786:8819-8838 Msa1394290:CDS 45.0%
! CAAACGGGCTTTCTGAGAAT+GGG + tig0021786:8820-8839 Msa1394290:CDS 45.0%
! AAACGGGCTTTCTGAGAATG+GGG + tig0021786:8821-8840 Msa1394290:CDS 45.0%
CAGGATCGTTTGATCGTTTG+TGG + tig0021786:9945-9964 Msa1394290:intron 45.0%
TAGAAAGCAGCAAGAAGACC+AGG - tig0021786:10294-10313 None:intergenic 45.0%
TTCTTGGTCAAGTCAGAGGA+AGG + tig0021786:10692-10711 Msa1394290:CDS 45.0%
! GTTTCTTCTTGGTCTTCTCG+TGG - tig0021786:11136-11155 None:intergenic 45.0%
GAGAAGACCAAGAAGAAACG+TGG + tig0021786:11137-11156 Msa1394290:CDS 45.0%
ATAGGTCCCACGTTTCTTCT+TGG - tig0021786:11147-11166 None:intergenic 45.0%
AGAAGAAACGTGGGACCTAT+AGG + tig0021786:11147-11166 Msa1394290:CDS 45.0%
GAAGAAACGTGGGACCTATA+GGG + tig0021786:11148-11167 Msa1394290:CDS 45.0%
AAGAAACGTGGGACCTATAG+GGG + tig0021786:11149-11168 Msa1394290:CDS 45.0%
!! TGATAACACCGGCTTTAGCA+TGG - tig0021786:11294-11313 None:intergenic 45.0%
!! ACAAATTTAAATTAAAAATA+GGG - tig0021786:6524-6543 None:intergenic 5.0%
!! TACAAATTTAAATTAAAAAT+AGG - tig0021786:6525-6544 None:intergenic 5.0%
!!! AAAAAATTCTAATTTTTTTT+AGG - tig0021786:6597-6616 None:intergenic 5.0%
!!! TAAAAATTTTTAAGAAAATT+TGG + tig0021786:10040-10059 Msa1394290:intron 5.0%
!!! AAAAATTTTTAAGAAAATTT+GGG + tig0021786:10041-10060 Msa1394290:intron 5.0%
CGTATGCCTGCAAATCCATC+AGG + tig0021786:5642-5661 Msa1394290:exon 50.0%
GGAGTGAAAGTGAAGAGGGT+TGG - tig0021786:5681-5700 None:intergenic 50.0%
GACGAGGAGTGAAAGTGAAG+AGG - tig0021786:5686-5705 None:intergenic 50.0%
GCTCTTTACTTGGAACGCTC+GGG + tig0021786:5789-5808 Msa1394290:CDS 50.0%
GAACGGTGAGAAGGAAGACA+CGG - tig0021786:7215-7234 None:intergenic 50.0%
TTCACTACGTCATTCCGCCA+TGG + tig0021786:7740-7759 Msa1394290:intron 50.0%
!! CCACAGTTGGTGACTCCAAT+TGG - tig0021786:8338-8357 None:intergenic 50.0%
CCAATTGGAGTCACCAACTG+TGG + tig0021786:8335-8354 Msa1394290:CDS 50.0%
! ATGGTGCTGAGACAGAGAAG+AGG + tig0021786:8550-8569 Msa1394290:CDS 50.0%
GGGGATGCAAAAGAGCAGAT+TGG + tig0021786:8615-8634 Msa1394290:CDS 50.0%
ATCTGTACATGGCATCCTCC+TGG + tig0021786:8931-8950 Msa1394290:intron 50.0%
! AAAGTGCCTATCCATTGGCC+AGG - tig0021786:8952-8971 None:intergenic 50.0%
!! TGTCATTCTGGGGTGTAACC+AGG - tig0021786:9128-9147 None:intergenic 50.0%
CGTTGAAATGCTGCCTTCAC+TGG - tig0021786:10482-10501 None:intergenic 50.0%
ACTGGGACACACCAAATGCA+TGG - tig0021786:10591-10610 None:intergenic 50.0%
GTATGGGTCTATCTCTCTGC+AGG + tig0021786:10630-10649 Msa1394290:intron 50.0%
CTTGAGCACCATGCTAAAGC+CGG + tig0021786:11283-11302 Msa1394290:three_prime_UTR 50.0%
CATCCTCCTGGCCAATGGAT+AGG + tig0021786:8943-8962 Msa1394290:intron 55.0%
GGGTCTATCTCTCTGCAGGA+TGG + tig0021786:10634-10653 Msa1394290:intron 55.0%
AAACGTGGGACCTATAGGGG+TGG + tig0021786:11152-11171 Msa1394290:CDS 55.0%
TCAGATGAGGAGTGACTGGG+AGG + tig0021786:11215-11234 Msa1394290:exon 55.0%
CATGGCATCCTCCTGGCCAA+TGG + tig0021786:8938-8957 Msa1394290:intron 60.0%
GTGCCTATCCATTGGCCAGG+AGG - tig0021786:8949-8968 None:intergenic 60.0%
! GATGGCGCCGAGAGTGGTTA+TGG + tig0021786:10652-10671 Msa1394290:CDS 60.0%
! CTGCAGGATGGCGCCGAGAG+TGG + tig0021786:10646-10665 Msa1394290:intron 70.0%
Chromosome Type Strat End Strand Name
tig0021786 gene 5569 11468 5569 ID=Msa1394290;Name=Msa1394290
tig0021786 mRNA 5569 11468 5569 ID=Msa1394290-mRNA-1;Parent=Msa1394290;Name=Msa1394290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=76|1|1|1|1|1|7|239|414
tig0021786 exon 5569 5857 5569 ID=Msa1394290-mRNA-1:exon:14266;Parent=Msa1394290-mRNA-1
tig0021786 exon 7296 7360 7296 ID=Msa1394290-mRNA-1:exon:14267;Parent=Msa1394290-mRNA-1
tig0021786 exon 8034 8077 8034 ID=Msa1394290-mRNA-1:exon:14268;Parent=Msa1394290-mRNA-1
tig0021786 exon 8238 8899 8238 ID=Msa1394290-mRNA-1:exon:14269;Parent=Msa1394290-mRNA-1
tig0021786 exon 10473 10565 10473 ID=Msa1394290-mRNA-1:exon:14270;Parent=Msa1394290-mRNA-1
tig0021786 exon 10652 10713 10652 ID=Msa1394290-mRNA-1:exon:14271;Parent=Msa1394290-mRNA-1
tig0021786 exon 11124 11468 11124 ID=Msa1394290-mRNA-1:exon:14272;Parent=Msa1394290-mRNA-1
tig0021786 five_prime_UTR 5569 5644 5569 ID=Msa1394290-mRNA-1:five_prime_utr;Parent=Msa1394290-mRNA-1
tig0021786 CDS 5645 5857 5645 ID=Msa1394290-mRNA-1:cds;Parent=Msa1394290-mRNA-1
tig0021786 CDS 7296 7360 7296 ID=Msa1394290-mRNA-1:cds;Parent=Msa1394290-mRNA-1
tig0021786 CDS 8034 8077 8034 ID=Msa1394290-mRNA-1:cds;Parent=Msa1394290-mRNA-1
tig0021786 CDS 8238 8899 8238 ID=Msa1394290-mRNA-1:cds;Parent=Msa1394290-mRNA-1
tig0021786 CDS 10473 10565 10473 ID=Msa1394290-mRNA-1:cds;Parent=Msa1394290-mRNA-1
tig0021786 CDS 10652 10713 10652 ID=Msa1394290-mRNA-1:cds;Parent=Msa1394290-mRNA-1
tig0021786 CDS 11124 11229 11124 ID=Msa1394290-mRNA-1:cds;Parent=Msa1394290-mRNA-1
tig0021786 three_prime_UTR 11230 11468 11230 ID=Msa1394290-mRNA-1:three_prime_utr;Parent=Msa1394290-mRNA-1
Gene Sequence

>Msa1394290

ATGCCTGCAAATCCATCAGGTATCAAAAGAATTCCAACCCTCTTCACTTTCACTCCTCGTCAAGTTTTGTTAAGCAATCGAACCATGAAGAACGGAACCCAAAACTCTGAACAGAAGCAGAAGCTTCTTCTGAACCAATCAATTGCTCTTTACTTGGAACGCTCGGGATTCTCCAAAACCCTCAAAAAGTTTCTCTCTGAAGCTAAAATTGAGAACGATAATACAGAGGGTTCCACAGTGGATCTAGAAGAGATGTGCCGCAAATATTTGGAAACATGTAGCAAGGATGCTAAGTCAACTATCAATGATCAAAAAGCGCAAGGTGTGGACTCCAAAAATGATGAGGAAAAATCCAAGGGAAAAAAGAAAAAGAAAAGCAACGTAGTTTCTGAATCTGTTGTTGATAATGTGGAAGACAACCAATTGGAGTCACCAACTGTGGTTACAGAAAACAAAGTTAAGGATGATTTATCTACAGATGCCAAAGTTGATAATGGTGCTGAGACAGAGAAACGGTCCAAACCCAAAAAGAAAAAGAACAATAAGTCAAATATTGAAGGGGGTGCAATAGAGCAGAATGCAGTTACAGAAAATAAAGTTAAGGATGATTTATCCATAGATGCCAAAGTTGAAAATGGTGCTGAGACAGAGAAGAGGTCCAAACGTAAAATGAAAAAGAAAGATAAGTCAATTAGTGAAGGGGATGCAAAAGAGCAGATTGGAGACCCCGATGCAACAAATGAAGAAGCAACGCCCGAAGAGAAGAAAGATTCTAAAAAAAGAAAGCGACCAATTTCTAAAGAAAATGGTGAACAAGATACCGAAATAAAAGCAGATGAAGAAACCAAACGCAGGAAAATAGAAAATATGAGTGAATCTAAGGGAGGAGACCAATCAGCAAAATCAAACGGGCTTTCTGAGAATGGGGAAGAAAATTCTTCTGTGCAAAAGTCTCAGAAGAAAAAACATAAAGAATCATCTGAGCAAAAACCAGTGAAGGCAGCATTTCAACGCGTACAAGTTGACAAAGTAGAATTTGTTGATGAGAGGCTTCAGGATAACTCATATTGGGCAAAGGATGGCGCCGAGAGTGGTTATGGTGCAAAAGCAGAAGAAATTCTTGGTCAAGTCAGAGGAAGGGATTTTCGCCACGAGAAGACCAAGAAGAAACGTGGGACCTATAGGGGTGGACTTATTGATTTACATTCCCACTCAGTTAAGTTTAATTATTCAGATGAGGAGTGA

Protein sequence

>Msa1394290

MPANPSGIKRIPTLFTFTPRQVLLSNRTMKNGTQNSEQKQKLLLNQSIALYLERSGFSKTLKKFLSEAKIENDNTEGSTVDLEEMCRKYLETCSKDAKSTINDQKAQGVDSKNDEEKSKGKKKKKSNVVSESVVDNVEDNQLESPTVVTENKVKDDLSTDAKVDNGAETEKRSKPKKKKNNKSNIEGGAIEQNAVTENKVKDDLSIDAKVENGAETEKRSKRKMKKKDKSISEGDAKEQIGDPDATNEEATPEEKKDSKKRKRPISKENGEQDTEIKADEETKRRKIENMSESKGGDQSAKSNGLSENGEENSSVQKSQKKKHKESSEQKPVKAAFQRVQVDKVEFVDERLQDNSYWAKDGAESGYGAKAEEILGQVRGRDFRHEKTKKKRGTYRGGLIDLHSHSVKFNYSDEE*