AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0160550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160550 MtrunA17_Chr5g0422511 88.158 152 15 1 23 171 670 821 4.04e-86 269
Msa0160550 MtrunA17_Chr1g0173701 88.182 110 13 0 23 132 294 403 1.26e-62 198
Msa0160550 MtrunA17_Chr5g0433371 47.826 69 35 1 31 98 807 875 2.50e-14 70.1
Msa0160550 MtrunA17_Chr8g0343741 46.377 69 36 1 31 99 1197 1264 4.72e-14 69.3
Msa0160550 MtrunA17_Chr5g0400101 36.620 71 45 0 31 101 839 909 9.81e-14 68.2
Msa0160550 MtrunA17_Chr5g0433421 41.892 74 42 1 31 103 891 964 1.18e-13 67.8
Msa0160550 MtrunA17_Chr5g0433321 44.595 74 40 1 31 103 783 856 1.31e-13 67.8
Msa0160550 MtrunA17_Chr5g0433471 41.558 77 44 1 26 101 801 877 2.06e-13 67.4
Msa0160550 MtrunA17_Chr2g0334291 31.624 117 71 1 31 138 1993 2109 5.37e-13 66.2
Msa0160550 MtrunA17_Chr5g0433331 41.667 72 41 1 31 101 49 120 9.08e-13 62.8
Msa0160550 MtrunA17_Chr8g0375151 43.056 72 40 1 31 101 750 821 1.39e-12 65.1
Msa0160550 MtrunA17_Chr3g0109541 39.189 74 44 1 31 103 807 880 6.48e-12 62.8
Msa0160550 MtrunA17_Chr8g0375181 35.652 115 62 3 26 138 853 957 8.61e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0160550 AT4G15570.2 65.217 92 32 0 31 122 597 688 1.33e-33 125
Msa0160550 AT4G15570.4 65.217 92 32 0 31 122 597 688 1.33e-33 125
Msa0160550 AT4G15570.3 65.217 92 32 0 31 122 686 777 1.52e-33 125
Msa0160550 AT4G15570.1 65.217 92 32 0 31 122 686 777 1.52e-33 125
Msa0160550 AT4G30100.2 50.000 70 34 1 31 100 1140 1208 2.63e-15 73.2
Msa0160550 AT4G30100.1 50.000 70 34 1 31 100 1140 1208 2.63e-15 73.2
Msa0160550 AT2G19120.1 48.571 70 35 1 31 100 977 1045 3.45e-15 72.8
Msa0160550 AT5G47010.1 36.620 71 45 0 31 101 851 921 1.11e-13 68.6
Msa0160550 AT1G65810.1 41.892 74 42 1 31 103 755 828 3.00e-13 67.4
Msa0160550 AT1G65810.3 41.892 74 42 1 31 103 755 828 3.14e-13 67.0
Msa0160550 AT1G65810.2 41.892 74 42 1 31 103 755 828 3.42e-13 67.0
Msa0160550 AT5G37030.1 41.667 72 41 1 31 101 552 623 5.00e-13 66.6
Msa0160550 AT1G16800.1 36.264 91 50 2 31 114 1807 1896 2.82e-12 64.3
Msa0160550 AT1G16800.2 36.264 91 50 2 31 114 1919 2008 3.02e-12 64.3
Msa0160550 AT1G16800.3 36.264 91 50 2 31 114 1849 1938 3.04e-12 64.3
Msa0160550 AT5G37150.1 38.356 73 44 1 31 102 731 803 1.40e-11 62.4
Msa0160550 AT5G37140.1 38.356 73 44 1 31 102 584 656 2.38e-11 61.6
Msa0160550 AT5G37165.1 40.278 72 42 1 31 101 318 389 7.81e-11 60.1

Find 45 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACACATTACTATCATTAAT+TGG 0.257895 1_4:-33296577 None:intergenic
CAGAGCAAAGTCTGCAGTTT+TGG 0.262690 1_4:+33295560 Msa0160550:CDS
CAAGCTGATGACAACGATTA+TGG 0.301388 1_4:+33296390 Msa0160550:CDS
TCACTTAAGAATGAGGGATA+TGG 0.329994 1_4:-33296249 None:intergenic
GCAAGTAAAGAAGGAGGTAT+AGG 0.337274 1_4:+33295498 Msa0160550:CDS
TCGACCACTTTATGCATTGC+TGG 0.357210 1_4:+33295009 Msa0160550:CDS
GGGGATGCTGACATGGGTTA+TGG 0.385427 1_4:+33296417 Msa0160550:CDS
CAAGTAAAGAAGGAGGTATA+GGG 0.388484 1_4:+33295499 Msa0160550:CDS
TTATGGAGGTGATGATGATT+AGG 0.389914 1_4:+33296434 Msa0160550:CDS
GACTAAGGTAAATTGTAAAC+TGG 0.394628 1_4:+33296525 Msa0160550:three_prime_UTR
TGCATTGCTGGTCGATTTGA+AGG 0.394758 1_4:+33295021 Msa0160550:CDS
AGAAGGAGGTATAGGGTTTG+TGG 0.421995 1_4:+33295506 Msa0160550:CDS
TTGTGTTTCTGTAGGTGGTT+GGG 0.428362 1_4:+33295652 Msa0160550:intron
GGAAGGAAGCCTTCAAGTGC+TGG 0.451110 1_4:-33294980 None:intergenic
TGCTGGTCGATTTGAAGGGT+CGG 0.455866 1_4:+33295026 Msa0160550:CDS
GCATAAAGTGGTCGAAATGC+TGG 0.456213 1_4:-33295001 None:intergenic
GTTGTGTTTCTGTAGGTGGT+TGG 0.468114 1_4:+33295651 Msa0160550:intron
GTGGCATATCCAGCACTTGA+AGG 0.472180 1_4:+33294971 Msa0160550:CDS
TTGTGGAAAGTGCTGAGAAA+AGG 0.473365 1_4:+33295715 Msa0160550:CDS
TCTATTTCAGGGGCGTGAAA+AGG 0.477046 1_4:+33295449 Msa0160550:intron
ACAATCAACGAATGAACGTT+GGG 0.488442 1_4:+33295532 Msa0160550:CDS
TTTACAATTTACCTTAGTCC+TGG 0.494278 1_4:-33296521 None:intergenic
TCAGCACTTTCTGTCTCCTC+AGG 0.494968 1_4:-33296312 None:intergenic
TGTGGAAAGTGCTGAGAAAA+GGG 0.495177 1_4:+33295716 Msa0160550:CDS
TGGAGACGGGGATGCTGACA+TGG 0.522700 1_4:+33296410 Msa0160550:CDS
TGTGTCAGAGCAAGTAAAGA+AGG 0.527547 1_4:+33295489 Msa0160550:CDS
ATGACAACGATTATGGAGAC+GGG 0.535741 1_4:+33296397 Msa0160550:CDS
GCACTTTCTGTCTCCTCAGG+TGG 0.537816 1_4:-33296309 None:intergenic
TCGACCAGCAATGCATAAAG+TGG 0.546370 1_4:-33295013 None:intergenic
CAAAACTGCAGACTTTGCTC+TGG 0.549162 1_4:-33295559 None:intergenic
AACAATCAACGAATGAACGT+TGG 0.551302 1_4:+33295531 Msa0160550:CDS
AGTAAACAATGATGCGCGAA+TGG 0.575591 1_4:+33296338 Msa0160550:CDS
GCATTGCTGGTCGATTTGAA+GGG 0.580700 1_4:+33295022 Msa0160550:CDS
TTGGGTCTGCCTCAACATTG+AGG 0.592122 1_4:+33295670 Msa0160550:CDS
GATGACAACGATTATGGAGA+CGG 0.593565 1_4:+33296396 Msa0160550:CDS
CATTGAGGAGGAACGTACAA+TGG 0.594093 1_4:+33295685 Msa0160550:CDS
ATTTGTATAGATGAGCAGAA+AGG 0.600858 1_4:+33296480 Msa0160550:three_prime_UTR
GATGCTGACATGGGTTATGG+AGG 0.614808 1_4:+33296420 Msa0160550:CDS
TACGTTCCTCCTCAATGTTG+AGG 0.620686 1_4:-33295679 None:intergenic
CGTACAATGGAACAAGCTTG+TGG 0.630942 1_4:+33295698 Msa0160550:CDS
GTCAGAGCAAGTAAAGAAGG+AGG 0.652708 1_4:+33295492 Msa0160550:CDS
GGAGACGGGGATGCTGACAT+GGG 0.669073 1_4:+33296411 Msa0160550:CDS
AAAGTGGTCGAAATGCTGGA+AGG 0.673774 1_4:-33294997 None:intergenic
GGTCTGCCTCAACATTGAGG+AGG 0.690370 1_4:+33295673 Msa0160550:CDS
TGACAACGATTATGGAGACG+GGG 0.712984 1_4:+33296398 Msa0160550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGAAATTGATGAAGAAA+TGG - chr1_4:33295091-33295110 None:intergenic 20.0%
!!! ATGTTTAGATATCAAGTTTT+AGG + chr1_4:33295904-33295923 Msa0160550:intron 20.0%
!! ATATAAAACTGAGTTTGATA+TGG + chr1_4:33296045-33296064 Msa0160550:intron 20.0%
!! AGATTAAAAATTATTGGTAG+AGG - chr1_4:33296145-33296164 None:intergenic 20.0%
!! GGATCTTCAAAAAAAAAAAT+TGG - chr1_4:33296559-33296578 None:intergenic 20.0%
!! AAATGAAATTGATGAAGAAA+TGG - chr1_4:33295091-33295110 None:intergenic 20.0%
!!! ATGTTTAGATATCAAGTTTT+AGG + chr1_4:33295904-33295923 Msa0160550:intron 20.0%
!! ATATAAAACTGAGTTTGATA+TGG + chr1_4:33296045-33296064 Msa0160550:intron 20.0%
!! AGATTAAAAATTATTGGTAG+AGG - chr1_4:33296145-33296164 None:intergenic 20.0%
!! GGATCTTCAAAAAAAAAAAT+TGG - chr1_4:33296559-33296578 None:intergenic 20.0%
! AAATCAGATGTCTATAGTTA+TGG - chr1_4:33295249-33295268 None:intergenic 25.0%
! ATGGTAATCACATTGAATTT+GGG + chr1_4:33295404-33295423 Msa0160550:intron 25.0%
!! TTTTGGTACTGTATCATTTT+GGG + chr1_4:33295577-33295596 Msa0160550:intron 25.0%
!!! AAATTTTAATTGAGCCTATC+TGG + chr1_4:33295817-33295836 Msa0160550:intron 25.0%
! TACGACTTGCAAAAATATTT+GGG - chr1_4:33295962-33295981 None:intergenic 25.0%
! CAAGTTAGAATCTATTATAG+AGG - chr1_4:33296100-33296119 None:intergenic 25.0%
!! TTTTCATCACTTAAGAATGA+GGG - chr1_4:33296258-33296277 None:intergenic 25.0%
!! ATTTTCATCACTTAAGAATG+AGG - chr1_4:33296259-33296278 None:intergenic 25.0%
!!! TTCATCTGTTTTTTTCTTCA+TGG - chr1_4:33296289-33296308 None:intergenic 25.0%
!! TTCTGTTTATGAATTTTACC+AGG + chr1_4:33296503-33296522 Msa0160550:three_prime_UTR 25.0%
! GACACATTACTATCATTAAT+TGG - chr1_4:33296580-33296599 None:intergenic 25.0%
! AAATCAGATGTCTATAGTTA+TGG - chr1_4:33295249-33295268 None:intergenic 25.0%
! ATGGTAATCACATTGAATTT+GGG + chr1_4:33295404-33295423 Msa0160550:intron 25.0%
!! TTTTGGTACTGTATCATTTT+GGG + chr1_4:33295577-33295596 Msa0160550:intron 25.0%
!!! AAATTTTAATTGAGCCTATC+TGG + chr1_4:33295817-33295836 Msa0160550:intron 25.0%
! TACGACTTGCAAAAATATTT+GGG - chr1_4:33295962-33295981 None:intergenic 25.0%
! CAAGTTAGAATCTATTATAG+AGG - chr1_4:33296100-33296119 None:intergenic 25.0%
!! TTTTCATCACTTAAGAATGA+GGG - chr1_4:33296258-33296277 None:intergenic 25.0%
!! ATTTTCATCACTTAAGAATG+AGG - chr1_4:33296259-33296278 None:intergenic 25.0%
!!! TTCATCTGTTTTTTTCTTCA+TGG - chr1_4:33296289-33296308 None:intergenic 25.0%
!! TTCTGTTTATGAATTTTACC+AGG + chr1_4:33296503-33296522 Msa0160550:three_prime_UTR 25.0%
! GACACATTACTATCATTAAT+TGG - chr1_4:33296580-33296599 None:intergenic 25.0%
AATGGTAAGAAAAATGACAG+TGG - chr1_4:33295073-33295092 None:intergenic 30.0%
CAACCTTAATGTTCTTTCTT+CGG + chr1_4:33295199-33295218 Msa0160550:intron 30.0%
!!! ATGATGGTTTTAGAAATGGT+TGG - chr1_4:33295225-33295244 None:intergenic 30.0%
!!! TGGAATGATGGTTTTAGAAA+TGG - chr1_4:33295229-33295248 None:intergenic 30.0%
TGTCTATAGTTATGGAATGA+TGG - chr1_4:33295241-33295260 None:intergenic 30.0%
TCTCTAATATGCTTCTTACA+TGG + chr1_4:33295385-33295404 Msa0160550:intron 30.0%
CATGGTAATCACATTGAATT+TGG + chr1_4:33295403-33295422 Msa0160550:intron 30.0%
AGTACTCTCATTTCTATTTC+AGG + chr1_4:33295437-33295456 Msa0160550:intron 30.0%
GTACTCTCATTTCTATTTCA+GGG + chr1_4:33295438-33295457 Msa0160550:intron 30.0%
TACTCTCATTTCTATTTCAG+GGG + chr1_4:33295439-33295458 Msa0160550:intron 30.0%
!! GTTTTGGTACTGTATCATTT+TGG + chr1_4:33295576-33295595 Msa0160550:intron 30.0%
! TTTGGTACTGTATCATTTTG+GGG + chr1_4:33295578-33295597 Msa0160550:intron 30.0%
!! CATTTTTGTTGTGTTTCTGT+AGG + chr1_4:33295644-33295663 Msa0160550:intron 30.0%
ACTTGCAAAAATATTTGGGT+CGG - chr1_4:33295958-33295977 None:intergenic 30.0%
GTACGACTTGCAAAAATATT+TGG - chr1_4:33295963-33295982 None:intergenic 30.0%
!! TGTTTGAATTCACTTTTGTC+AGG + chr1_4:33296005-33296024 Msa0160550:intron 30.0%
TCAGTGTTTGTTTGGTTATA+TGG - chr1_4:33296199-33296218 None:intergenic 30.0%
ATTTGTATAGATGAGCAGAA+AGG + chr1_4:33296480-33296499 Msa0160550:three_prime_UTR 30.0%
! TATGAATTTTACCAGGACTA+AGG + chr1_4:33296510-33296529 Msa0160550:three_prime_UTR 30.0%
TTTACAATTTACCTTAGTCC+TGG - chr1_4:33296524-33296543 None:intergenic 30.0%
GACTAAGGTAAATTGTAAAC+TGG + chr1_4:33296525-33296544 Msa0160550:three_prime_UTR 30.0%
AATGGTAAGAAAAATGACAG+TGG - chr1_4:33295073-33295092 None:intergenic 30.0%
CAACCTTAATGTTCTTTCTT+CGG + chr1_4:33295199-33295218 Msa0160550:intron 30.0%
!!! ATGATGGTTTTAGAAATGGT+TGG - chr1_4:33295225-33295244 None:intergenic 30.0%
!!! TGGAATGATGGTTTTAGAAA+TGG - chr1_4:33295229-33295248 None:intergenic 30.0%
TGTCTATAGTTATGGAATGA+TGG - chr1_4:33295241-33295260 None:intergenic 30.0%
TCTCTAATATGCTTCTTACA+TGG + chr1_4:33295385-33295404 Msa0160550:intron 30.0%
CATGGTAATCACATTGAATT+TGG + chr1_4:33295403-33295422 Msa0160550:intron 30.0%
AGTACTCTCATTTCTATTTC+AGG + chr1_4:33295437-33295456 Msa0160550:intron 30.0%
GTACTCTCATTTCTATTTCA+GGG + chr1_4:33295438-33295457 Msa0160550:intron 30.0%
TACTCTCATTTCTATTTCAG+GGG + chr1_4:33295439-33295458 Msa0160550:intron 30.0%
!! GTTTTGGTACTGTATCATTT+TGG + chr1_4:33295576-33295595 Msa0160550:intron 30.0%
! TTTGGTACTGTATCATTTTG+GGG + chr1_4:33295578-33295597 Msa0160550:intron 30.0%
!! CATTTTTGTTGTGTTTCTGT+AGG + chr1_4:33295644-33295663 Msa0160550:intron 30.0%
ACTTGCAAAAATATTTGGGT+CGG - chr1_4:33295958-33295977 None:intergenic 30.0%
GTACGACTTGCAAAAATATT+TGG - chr1_4:33295963-33295982 None:intergenic 30.0%
!! TGTTTGAATTCACTTTTGTC+AGG + chr1_4:33296005-33296024 Msa0160550:intron 30.0%
TCAGTGTTTGTTTGGTTATA+TGG - chr1_4:33296199-33296218 None:intergenic 30.0%
ATTTGTATAGATGAGCAGAA+AGG + chr1_4:33296480-33296499 Msa0160550:three_prime_UTR 30.0%
! TATGAATTTTACCAGGACTA+AGG + chr1_4:33296510-33296529 Msa0160550:three_prime_UTR 30.0%
TTTACAATTTACCTTAGTCC+TGG - chr1_4:33296524-33296543 None:intergenic 30.0%
GACTAAGGTAAATTGTAAAC+TGG + chr1_4:33296525-33296544 Msa0160550:three_prime_UTR 30.0%
AAATGACAGTGGTGAGTTTA+TGG - chr1_4:33295062-33295081 None:intergenic 35.0%
! CAAGTAAAGAAGGAGGTATA+GGG + chr1_4:33295499-33295518 Msa0160550:CDS 35.0%
AACAATCAACGAATGAACGT+TGG + chr1_4:33295531-33295550 Msa0160550:CDS 35.0%
ACAATCAACGAATGAACGTT+GGG + chr1_4:33295532-33295551 Msa0160550:CDS 35.0%
!! TTTTGTTGTGTTTCTGTAGG+TGG + chr1_4:33295647-33295666 Msa0160550:intron 35.0%
CATGCAAAATTTGACCAGAT+AGG - chr1_4:33295834-33295853 None:intergenic 35.0%
TTGTTGTGTCAGTGTTTGTT+TGG - chr1_4:33296207-33296226 None:intergenic 35.0%
ACACAACAATTTCCTTATGC+AGG + chr1_4:33296218-33296237 Msa0160550:intron 35.0%
TCACTTAAGAATGAGGGATA+TGG - chr1_4:33296252-33296271 None:intergenic 35.0%
! TTATGGAGGTGATGATGATT+AGG + chr1_4:33296434-33296453 Msa0160550:CDS 35.0%
AAATGACAGTGGTGAGTTTA+TGG - chr1_4:33295062-33295081 None:intergenic 35.0%
! CAAGTAAAGAAGGAGGTATA+GGG + chr1_4:33295499-33295518 Msa0160550:CDS 35.0%
AACAATCAACGAATGAACGT+TGG + chr1_4:33295531-33295550 Msa0160550:CDS 35.0%
ACAATCAACGAATGAACGTT+GGG + chr1_4:33295532-33295551 Msa0160550:CDS 35.0%
!! TTTTGTTGTGTTTCTGTAGG+TGG + chr1_4:33295647-33295666 Msa0160550:intron 35.0%
CATGCAAAATTTGACCAGAT+AGG - chr1_4:33295834-33295853 None:intergenic 35.0%
TTGTTGTGTCAGTGTTTGTT+TGG - chr1_4:33296207-33296226 None:intergenic 35.0%
ACACAACAATTTCCTTATGC+AGG + chr1_4:33296218-33296237 Msa0160550:intron 35.0%
TCACTTAAGAATGAGGGATA+TGG - chr1_4:33296252-33296271 None:intergenic 35.0%
! TTATGGAGGTGATGATGATT+AGG + chr1_4:33296434-33296453 Msa0160550:CDS 35.0%
TGGCCGAAGAAAGAACATTA+AGG - chr1_4:33295205-33295224 None:intergenic 40.0%
TGTGTCAGAGCAAGTAAAGA+AGG + chr1_4:33295489-33295508 Msa0160550:CDS 40.0%
! GCAAGTAAAGAAGGAGGTAT+AGG + chr1_4:33295498-33295517 Msa0160550:CDS 40.0%
AATGCATCACGTTACAGCTA+TGG - chr1_4:33295628-33295647 None:intergenic 40.0%
! TTGTGTTTCTGTAGGTGGTT+GGG + chr1_4:33295652-33295671 Msa0160550:intron 40.0%
!! TTGTGGAAAGTGCTGAGAAA+AGG + chr1_4:33295715-33295734 Msa0160550:CDS 40.0%
!! TGTGGAAAGTGCTGAGAAAA+GGG + chr1_4:33295716-33295735 Msa0160550:CDS 40.0%
TGGGTCGGTATCAAATTAGA+TGG - chr1_4:33295943-33295962 None:intergenic 40.0%
AAAAACAGATGAACCACCTG+AGG + chr1_4:33296296-33296315 Msa0160550:CDS 40.0%
AGTAAACAATGATGCGCGAA+TGG + chr1_4:33296338-33296357 Msa0160550:CDS 40.0%
CAAGCTGATGACAACGATTA+TGG + chr1_4:33296390-33296409 Msa0160550:CDS 40.0%
GATGACAACGATTATGGAGA+CGG + chr1_4:33296396-33296415 Msa0160550:CDS 40.0%
ATGACAACGATTATGGAGAC+GGG + chr1_4:33296397-33296416 Msa0160550:CDS 40.0%
TGGCCGAAGAAAGAACATTA+AGG - chr1_4:33295205-33295224 None:intergenic 40.0%
TGTGTCAGAGCAAGTAAAGA+AGG + chr1_4:33295489-33295508 Msa0160550:CDS 40.0%
! GCAAGTAAAGAAGGAGGTAT+AGG + chr1_4:33295498-33295517 Msa0160550:CDS 40.0%
AATGCATCACGTTACAGCTA+TGG - chr1_4:33295628-33295647 None:intergenic 40.0%
! TTGTGTTTCTGTAGGTGGTT+GGG + chr1_4:33295652-33295671 Msa0160550:intron 40.0%
!! TTGTGGAAAGTGCTGAGAAA+AGG + chr1_4:33295715-33295734 Msa0160550:CDS 40.0%
!! TGTGGAAAGTGCTGAGAAAA+GGG + chr1_4:33295716-33295735 Msa0160550:CDS 40.0%
TGGGTCGGTATCAAATTAGA+TGG - chr1_4:33295943-33295962 None:intergenic 40.0%
AAAAACAGATGAACCACCTG+AGG + chr1_4:33296296-33296315 Msa0160550:CDS 40.0%
AGTAAACAATGATGCGCGAA+TGG + chr1_4:33296338-33296357 Msa0160550:CDS 40.0%
CAAGCTGATGACAACGATTA+TGG + chr1_4:33296390-33296409 Msa0160550:CDS 40.0%
GATGACAACGATTATGGAGA+CGG + chr1_4:33296396-33296415 Msa0160550:CDS 40.0%
ATGACAACGATTATGGAGAC+GGG + chr1_4:33296397-33296416 Msa0160550:CDS 40.0%
AAAGTGGTCGAAATGCTGGA+AGG - chr1_4:33295000-33295019 None:intergenic 45.0%
GCATAAAGTGGTCGAAATGC+TGG - chr1_4:33295004-33295023 None:intergenic 45.0%
TCGACCACTTTATGCATTGC+TGG + chr1_4:33295009-33295028 Msa0160550:CDS 45.0%
TCGACCAGCAATGCATAAAG+TGG - chr1_4:33295016-33295035 None:intergenic 45.0%
!! TGCATTGCTGGTCGATTTGA+AGG + chr1_4:33295021-33295040 Msa0160550:CDS 45.0%
!! GCATTGCTGGTCGATTTGAA+GGG + chr1_4:33295022-33295041 Msa0160550:CDS 45.0%
CTTGAACTGAACCAGGATCT+TGG - chr1_4:33295129-33295148 None:intergenic 45.0%
AGACGCTTGTAAATCCAGTG+TGG + chr1_4:33295147-33295166 Msa0160550:intron 45.0%
GACGCTTGTAAATCCAGTGT+GGG + chr1_4:33295148-33295167 Msa0160550:intron 45.0%
GCGAGTTATATTTCCCACAC+TGG - chr1_4:33295164-33295183 None:intergenic 45.0%
! TCTATTTCAGGGGCGTGAAA+AGG + chr1_4:33295449-33295468 Msa0160550:intron 45.0%
GTCAGAGCAAGTAAAGAAGG+AGG + chr1_4:33295492-33295511 Msa0160550:CDS 45.0%
! AGAAGGAGGTATAGGGTTTG+TGG + chr1_4:33295506-33295525 Msa0160550:CDS 45.0%
CAAAACTGCAGACTTTGCTC+TGG - chr1_4:33295562-33295581 None:intergenic 45.0%
! CAGAGCAAAGTCTGCAGTTT+TGG + chr1_4:33295560-33295579 Msa0160550:CDS 45.0%
! GTTGTGTTTCTGTAGGTGGT+TGG + chr1_4:33295651-33295670 Msa0160550:intron 45.0%
TACGTTCCTCCTCAATGTTG+AGG - chr1_4:33295682-33295701 None:intergenic 45.0%
CATTGAGGAGGAACGTACAA+TGG + chr1_4:33295685-33295704 Msa0160550:CDS 45.0%
CGTACAATGGAACAAGCTTG+TGG + chr1_4:33295698-33295717 Msa0160550:CDS 45.0%
ATGGTTTAGACGCCTGCATA+AGG - chr1_4:33296233-33296252 None:intergenic 45.0%
TGACAACGATTATGGAGACG+GGG + chr1_4:33296398-33296417 Msa0160550:CDS 45.0%
AAAGTGGTCGAAATGCTGGA+AGG - chr1_4:33295000-33295019 None:intergenic 45.0%
GCATAAAGTGGTCGAAATGC+TGG - chr1_4:33295004-33295023 None:intergenic 45.0%
TCGACCACTTTATGCATTGC+TGG + chr1_4:33295009-33295028 Msa0160550:CDS 45.0%
TCGACCAGCAATGCATAAAG+TGG - chr1_4:33295016-33295035 None:intergenic 45.0%
!! TGCATTGCTGGTCGATTTGA+AGG + chr1_4:33295021-33295040 Msa0160550:CDS 45.0%
!! GCATTGCTGGTCGATTTGAA+GGG + chr1_4:33295022-33295041 Msa0160550:CDS 45.0%
CTTGAACTGAACCAGGATCT+TGG - chr1_4:33295129-33295148 None:intergenic 45.0%
AGACGCTTGTAAATCCAGTG+TGG + chr1_4:33295147-33295166 Msa0160550:intron 45.0%
GACGCTTGTAAATCCAGTGT+GGG + chr1_4:33295148-33295167 Msa0160550:intron 45.0%
GCGAGTTATATTTCCCACAC+TGG - chr1_4:33295164-33295183 None:intergenic 45.0%
! TCTATTTCAGGGGCGTGAAA+AGG + chr1_4:33295449-33295468 Msa0160550:intron 45.0%
GTCAGAGCAAGTAAAGAAGG+AGG + chr1_4:33295492-33295511 Msa0160550:CDS 45.0%
! AGAAGGAGGTATAGGGTTTG+TGG + chr1_4:33295506-33295525 Msa0160550:CDS 45.0%
CAAAACTGCAGACTTTGCTC+TGG - chr1_4:33295562-33295581 None:intergenic 45.0%
! CAGAGCAAAGTCTGCAGTTT+TGG + chr1_4:33295560-33295579 Msa0160550:CDS 45.0%
! GTTGTGTTTCTGTAGGTGGT+TGG + chr1_4:33295651-33295670 Msa0160550:intron 45.0%
TACGTTCCTCCTCAATGTTG+AGG - chr1_4:33295682-33295701 None:intergenic 45.0%
CATTGAGGAGGAACGTACAA+TGG + chr1_4:33295685-33295704 Msa0160550:CDS 45.0%
CGTACAATGGAACAAGCTTG+TGG + chr1_4:33295698-33295717 Msa0160550:CDS 45.0%
ATGGTTTAGACGCCTGCATA+AGG - chr1_4:33296233-33296252 None:intergenic 45.0%
TGACAACGATTATGGAGACG+GGG + chr1_4:33296398-33296417 Msa0160550:CDS 45.0%
!!! AATTTAAGATTAAAAATTAT+TGG - chr1_4:33296151-33296170 None:intergenic 5.0%
!!! AATTTAAGATTAAAAATTAT+TGG - chr1_4:33296151-33296170 None:intergenic 5.0%
GTGGCATATCCAGCACTTGA+AGG + chr1_4:33294971-33294990 Msa0160550:CDS 50.0%
!! TGCTGGTCGATTTGAAGGGT+CGG + chr1_4:33295026-33295045 Msa0160550:CDS 50.0%
CACACTTGAGTCCAAGATCC+TGG + chr1_4:33295115-33295134 Msa0160550:intron 50.0%
CAAGCGTCTTGAACTGAACC+AGG - chr1_4:33295136-33295155 None:intergenic 50.0%
TTGGGTCTGCCTCAACATTG+AGG + chr1_4:33295670-33295689 Msa0160550:CDS 50.0%
TCAGCACTTTCTGTCTCCTC+AGG - chr1_4:33296315-33296334 None:intergenic 50.0%
! GATGCTGACATGGGTTATGG+AGG + chr1_4:33296420-33296439 Msa0160550:CDS 50.0%
GTGGCATATCCAGCACTTGA+AGG + chr1_4:33294971-33294990 Msa0160550:CDS 50.0%
!! TGCTGGTCGATTTGAAGGGT+CGG + chr1_4:33295026-33295045 Msa0160550:CDS 50.0%
CACACTTGAGTCCAAGATCC+TGG + chr1_4:33295115-33295134 Msa0160550:intron 50.0%
CAAGCGTCTTGAACTGAACC+AGG - chr1_4:33295136-33295155 None:intergenic 50.0%
TTGGGTCTGCCTCAACATTG+AGG + chr1_4:33295670-33295689 Msa0160550:CDS 50.0%
TCAGCACTTTCTGTCTCCTC+AGG - chr1_4:33296315-33296334 None:intergenic 50.0%
! GATGCTGACATGGGTTATGG+AGG + chr1_4:33296420-33296439 Msa0160550:CDS 50.0%
GGAAGGAAGCCTTCAAGTGC+TGG - chr1_4:33294983-33295002 None:intergenic 55.0%
GGTCTGCCTCAACATTGAGG+AGG + chr1_4:33295673-33295692 Msa0160550:CDS 55.0%
GCACTTTCTGTCTCCTCAGG+TGG - chr1_4:33296312-33296331 None:intergenic 55.0%
! GGGGATGCTGACATGGGTTA+TGG + chr1_4:33296417-33296436 Msa0160550:CDS 55.0%
GGAAGGAAGCCTTCAAGTGC+TGG - chr1_4:33294983-33295002 None:intergenic 55.0%
GGTCTGCCTCAACATTGAGG+AGG + chr1_4:33295673-33295692 Msa0160550:CDS 55.0%
GCACTTTCTGTCTCCTCAGG+TGG - chr1_4:33296312-33296331 None:intergenic 55.0%
! GGGGATGCTGACATGGGTTA+TGG + chr1_4:33296417-33296436 Msa0160550:CDS 55.0%
TGGAGACGGGGATGCTGACA+TGG + chr1_4:33296410-33296429 Msa0160550:CDS 60.0%
GGAGACGGGGATGCTGACAT+GGG + chr1_4:33296411-33296430 Msa0160550:CDS 60.0%
TGGAGACGGGGATGCTGACA+TGG + chr1_4:33296410-33296429 Msa0160550:CDS 60.0%
GGAGACGGGGATGCTGACAT+GGG + chr1_4:33296411-33296430 Msa0160550:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 33294962 33296606 33294962 ID=Msa0160550;Name=Msa0160550
chr1_4 mRNA 33294962 33296606 33294962 ID=Msa0160550-mRNA-1;Parent=Msa0160550;Name=Msa0160550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.66|0.5|0.75|1|1|4|151|171
chr1_4 exon 33294962 33295051 33294962 ID=Msa0160550-mRNA-1:exon:10412;Parent=Msa0160550-mRNA-1
chr1_4 exon 33295459 33295581 33295459 ID=Msa0160550-mRNA-1:exon:10413;Parent=Msa0160550-mRNA-1
chr1_4 exon 33295666 33295752 33295666 ID=Msa0160550-mRNA-1:exon:10414;Parent=Msa0160550-mRNA-1
chr1_4 exon 33296240 33296606 33296240 ID=Msa0160550-mRNA-1:exon:10415;Parent=Msa0160550-mRNA-1
chr1_4 CDS 33294962 33295051 33294962 ID=Msa0160550-mRNA-1:cds;Parent=Msa0160550-mRNA-1
chr1_4 CDS 33295459 33295581 33295459 ID=Msa0160550-mRNA-1:cds;Parent=Msa0160550-mRNA-1
chr1_4 CDS 33295666 33295752 33295666 ID=Msa0160550-mRNA-1:cds;Parent=Msa0160550-mRNA-1
chr1_4 CDS 33296240 33296455 33296240 ID=Msa0160550-mRNA-1:cds;Parent=Msa0160550-mRNA-1
chr1_4 three_prime_UTR 33296456 33296606 33296456 ID=Msa0160550-mRNA-1:three_prime_utr;Parent=Msa0160550-mRNA-1
Gene Sequence

>Msa0160550

ATGGTTTGGGTGGCATATCCAGCACTTGAAGGCTTCCTTCCAGCATTTCGACCACTTTATGCATTGCTGGTCGATTTGAAGGGTCGGTTTGGGCGTGAAAAGGACGTTGCAATATTTTCATGTGTCAGAGCAAGTAAAGAAGGAGGTATAGGGTTTGTGGATAACAATCAACGAATGAACGTTGGGATCACCAGAGCAAAGTCTGCAGTTTTGGTGGTTGGGTCTGCCTCAACATTGAGGAGGAACGTACAATGGAACAAGCTTGTGGAAAGTGCTGAGAAAAGGGACTGTTTCTTCAAAGCGTCTAAACCATATCCCTCATTCTTAAGTGATGAAAATCTTGAATCCATGAAGAAAAAAACAGATGAACCACCTGAGGAGACAGAAAGTGCTGATAGAGTAAACAATGATGCGCGAATGGACAATGTTGCAGAACATACTTATCAAGAGCAAGCTGATGACAACGATTATGGAGACGGGGATGCTGACATGGGTTATGGAGGTGATGATGATTAG

Protein sequence

>Msa0160550

MVWVAYPALEGFLPAFRPLYALLVDLKGRFGREKDVAIFSCVRASKEGGIGFVDNNQRMNVGITRAKSAVLVVGSASTLRRNVQWNKLVESAEKRDCFFKASKPYPSFLSDENLESMKKKTDEPPEETESADRVNNDARMDNVAEHTYQEQADDNDYGDGDADMGYGGDDD*