Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276840 | sp|Q940U6|FLU_ARATH | 76.923 | 221 | 49 | 2 | 81 | 300 | 97 | 316 | 4.28e-119 | 347 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276840 | G7L8A8 | 98.000 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 0.0 | 605 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0043680 | Msa1276840 | 0.808386 | 3.176854e-50 | -8.615850e-47 |
| Msa0077910 | Msa1276840 | 0.804105 | 2.533740e-49 | -8.615850e-47 |
| Msa0092660 | Msa1276840 | 0.832321 | 1.010551e-55 | -8.615850e-47 |
| Msa0092680 | Msa1276840 | 0.835339 | 1.777905e-56 | -8.615850e-47 |
| Msa0092730 | Msa1276840 | 0.830918 | 2.240388e-55 | -8.615850e-47 |
| Msa0703760 | Msa1276840 | 0.815481 | 9.043117e-52 | -8.615850e-47 |
| Msa0705440 | Msa1276840 | 0.812511 | 4.086724e-51 | -8.615850e-47 |
| Msa0125800 | Msa1276840 | 0.809428 | 1.901736e-50 | -8.615850e-47 |
| Msa0137600 | Msa1276840 | 0.831142 | 1.973736e-55 | -8.615850e-47 |
| Msa0170440 | Msa1276840 | 0.806835 | 6.783537e-50 | -8.615850e-47 |
| Msa0203520 | Msa1276840 | 0.802571 | 5.266124e-49 | -8.615850e-47 |
| Msa1234840 | Msa1276840 | 0.923838 | 1.565006e-89 | -8.615850e-47 |
| Msa1276840 | Msa1303750 | 0.811042 | 8.530420e-51 | -8.615850e-47 |
| Msa1276840 | Msa1303810 | 0.823370 | 1.436743e-53 | -8.615850e-47 |
| Msa1276840 | Msa1363080 | 0.806463 | 8.126458e-50 | -8.615850e-47 |
| Msa1276840 | Msa1398840 | 0.820833 | 5.565691e-53 | -8.615850e-47 |
| Msa1276840 | Msa1416460 | 0.800190 | 1.619114e-48 | -8.615850e-47 |
| Msa1276840 | Msa1437320 | 0.803000 | 4.296159e-49 | -8.615850e-47 |
| Msa1276840 | Msa1460650 | 0.802144 | 6.447940e-49 | -8.615850e-47 |
| Msa1040010 | Msa1276840 | 0.800675 | 1.289359e-48 | -8.615850e-47 |
| Msa1080620 | Msa1276840 | 0.823166 | 1.603538e-53 | -8.615850e-47 |
| Msa1080690 | Msa1276840 | 0.818283 | 2.125546e-52 | -8.615850e-47 |
| Msa1084150 | Msa1276840 | 0.824299 | 8.702085e-54 | -8.615850e-47 |
| Msa0280140 | Msa1276840 | 0.822133 | 2.787869e-53 | -8.615850e-47 |
| Msa0308430 | Msa1276840 | 0.800740 | 1.250664e-48 | -8.615850e-47 |
| Msa0342620 | Msa1276840 | 0.802636 | 5.107107e-49 | -8.615850e-47 |
| Msa1126310 | Msa1276840 | 0.810348 | 1.205333e-50 | -8.615850e-47 |
| Msa1127510 | Msa1276840 | 0.809454 | 1.876985e-50 | -8.615850e-47 |
| Msa1143630 | Msa1276840 | 0.811760 | 5.957807e-51 | -8.615850e-47 |
| Msa1167160 | Msa1276840 | 0.807456 | 5.011570e-50 | -8.615850e-47 |
| Msa1197110 | Msa1276840 | 0.809779 | 1.598497e-50 | -8.615850e-47 |
| Msa1209150 | Msa1276840 | 0.807297 | 5.415356e-50 | -8.615850e-47 |
| Msa1219250 | Msa1276840 | 0.822582 | 2.193372e-53 | -8.615850e-47 |
| Msa0485280 | Msa1276840 | 0.805039 | 1.618390e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276840 | MtrunA17_Chr8g0344501 | 98.000 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1276840 | AT3G14110.2 | 76.923 | 221 | 49 | 2 | 81 | 300 | 13 | 232 | 5.93e-122 | 349 |
| Msa1276840 | AT3G14110.3 | 76.923 | 221 | 49 | 2 | 81 | 300 | 98 | 317 | 2.79e-120 | 348 |
| Msa1276840 | AT3G14110.1 | 76.923 | 221 | 49 | 2 | 81 | 300 | 97 | 316 | 4.35e-120 | 347 |
Find 86 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAGATCAACGCGGCTTTA+AGG | 0.184793 | 8_3:-11729149 | Msa1276840:CDS |
| GAAATTAGCTCCTGCTTCTT+TGG | 0.201498 | 8_3:+11729036 | None:intergenic |
| AACACCAACCTTCACCTTTC+AGG | 0.243830 | 8_3:-11731153 | Msa1276840:intron |
| TCTGGGAGCACAGAAGCTTT+TGG | 0.282801 | 8_3:-11728308 | Msa1276840:CDS |
| TTATAACTCTAAAATGAAAT+TGG | 0.294948 | 8_3:+11727969 | None:intergenic |
| TGATAATGTATAACTTTGTT+TGG | 0.302234 | 8_3:+11727923 | None:intergenic |
| AATGGTTGTAGTATCATCTA+TGG | 0.315818 | 8_3:-11727948 | Msa1276840:three_prime_UTR |
| TGAGCTTGCACAGAATATTA+AGG | 0.320175 | 8_3:-11728938 | Msa1276840:CDS |
| TCCTTAAAGCCGCGTTGATC+TGG | 0.321104 | 8_3:+11729148 | None:intergenic |
| AAATTAGCTCCTGCTTCTTT+GGG | 0.336560 | 8_3:+11729037 | None:intergenic |
| AACTCCGTGAACGCTCTATC+TGG | 0.354176 | 8_3:+11728973 | None:intergenic |
| TCTAATATAAACTCTCAATA+AGG | 0.373926 | 8_3:+11728082 | None:intergenic |
| AAATTGGCCAACATCTTTCA+TGG | 0.375590 | 8_3:+11727985 | None:intergenic |
| GGGATAACAATGATAATCCT+TGG | 0.411325 | 8_3:+11731310 | None:intergenic |
| CTGCTAGCAGTAGCCCTCAT+TGG | 0.433063 | 8_3:-11729756 | Msa1276840:CDS |
| CACTTGTCTTTCTTTAAAAG+TGG | 0.436649 | 8_3:-11730498 | Msa1276840:CDS |
| GAAAGAGAAGGAGAAGACTC+TGG | 0.438780 | 8_3:-11728326 | Msa1276840:CDS |
| GTTATCCGCCTCACATGTTT+CGG | 0.439512 | 8_3:+11729800 | None:intergenic |
| GCAGCCAGATAGAGCGTTCA+CGG | 0.441757 | 8_3:-11728977 | Msa1276840:CDS |
| TTCTCCTTCTCTTTCAGAGA+TGG | 0.442375 | 8_3:+11728334 | None:intergenic |
| TTGGAGCAGAATTGAGGAAG+TGG | 0.443371 | 8_3:+11731177 | None:intergenic |
| AAGGTGAAGGTTGGTGTTGT+TGG | 0.445814 | 8_3:+11731158 | None:intergenic |
| TATTATTGAGACTGTAAAGT+TGG | 0.455556 | 8_3:-11728112 | Msa1276840:three_prime_UTR |
| GTGAGGACGAGAGATGAAAC+AGG | 0.481777 | 8_3:+11731203 | None:intergenic |
| AGGGCTACTGCTAGCAGTAT+AGG | 0.484170 | 8_3:+11729762 | None:intergenic |
| ACTTTGAGTTATGCTCCCAT+TGG | 0.484515 | 8_3:-11729096 | Msa1276840:CDS |
| TATTGTTGACCCAAAGAAGC+AGG | 0.485732 | 8_3:-11729046 | Msa1276840:CDS |
| AATGAGAGCAATGGCGGTTG+TGG | 0.486057 | 8_3:-11731235 | Msa1276840:CDS |
| CGCTATCCTACCACCACCAA+TGG | 0.489764 | 8_3:+11729080 | None:intergenic |
| CTAATCCTCACTCTCATGTT+CGG | 0.493211 | 8_3:-11728198 | Msa1276840:exon |
| TTGAGTTATGCTCCCATTGG+TGG | 0.494886 | 8_3:-11729093 | Msa1276840:CDS |
| GTATATTGCAAGGTTGGAAA+AGG | 0.495847 | 8_3:-11728222 | Msa1276840:CDS |
| GCTTCACTGCTCAAACTGTA+AGG | 0.496267 | 8_3:-11730417 | Msa1276840:intron |
| GCTGATTGTTACACTGAGCT+TGG | 0.497045 | 8_3:-11728278 | Msa1276840:CDS |
| TGACAAGTATATTGCAAGGT+TGG | 0.497877 | 8_3:-11728228 | Msa1276840:CDS |
| CTTGGAGACCTTGAGAAAGC+AGG | 0.512469 | 8_3:-11728260 | Msa1276840:CDS |
| AGTATTGCCCTGCTTTCTCA+AGG | 0.519335 | 8_3:+11728252 | None:intergenic |
| TGCAAAGACAAGGAAAGTAT+CGG | 0.523699 | 8_3:-11728388 | Msa1276840:CDS |
| TTTGAGCAGTGAAGCACGGT+TGG | 0.527472 | 8_3:+11730425 | None:intergenic |
| TATGTTCAATCTCTAGTATG+TGG | 0.531315 | 8_3:-11728051 | Msa1276840:three_prime_UTR |
| GCAAAGACAAGGAAAGTATC+GGG | 0.535618 | 8_3:-11728387 | Msa1276840:CDS |
| GTTTCGGCTAAAGCTTTACA+AGG | 0.537677 | 8_3:+11729816 | None:intergenic |
| TGCTGTTAAATACCATTCGA+TGG | 0.538453 | 8_3:-11728363 | Msa1276840:CDS |
| TGTTCTGAGAGGATAAATGT+TGG | 0.549777 | 8_3:+11731280 | None:intergenic |
| TCGCAAGAAACAGCAATGAA+TGG | 0.550094 | 8_3:+11729862 | None:intergenic |
| GAATATTAAGGATCCTATTG+AGG | 0.559537 | 8_3:-11728926 | Msa1276840:CDS |
| GCTATCCTACCACCACCAAT+GGG | 0.559574 | 8_3:+11729081 | None:intergenic |
| AAAGAGAAGGAGAAGACTCT+GGG | 0.564267 | 8_3:-11728325 | Msa1276840:CDS |
| AATTGAGGAAGTGGAGAGTG+AGG | 0.564867 | 8_3:+11731186 | None:intergenic |
| AATTGGTCCATGAAAGATGT+TGG | 0.566855 | 8_3:-11727992 | Msa1276840:three_prime_UTR |
| AGTTATGCTCCCATTGGTGG+TGG | 0.570022 | 8_3:-11729090 | Msa1276840:CDS |
| GTGTTGTTGGAGCAGAATTG+AGG | 0.570951 | 8_3:+11731171 | None:intergenic |
| TTGTCCATCTCTGAAAGAGA+AGG | 0.581064 | 8_3:-11728338 | Msa1276840:CDS |
| GCCCTCATTGGAGCCACTGT+GGG | 0.584271 | 8_3:-11729744 | Msa1276840:CDS |
| CTAACCTGAAAGGTGAAGGT+TGG | 0.586391 | 8_3:+11731149 | None:intergenic |
| ATGGGAGCATAACTCAAAGT+GGG | 0.586412 | 8_3:+11729099 | None:intergenic |
| TCTAGTATGTGGAATGAATG+AGG | 0.586657 | 8_3:-11728040 | Msa1276840:three_prime_UTR |
| TTGGAGACCTTGAGAAAGCA+GGG | 0.586734 | 8_3:-11728259 | Msa1276840:CDS |
| TGCAAAACAAATGAGAGCAA+TGG | 0.586786 | 8_3:-11731244 | Msa1276840:exon |
| CTCCCACAGTGGCTCCAATG+AGG | 0.591943 | 8_3:+11729742 | None:intergenic |
| AATGGGAGCATAACTCAAAG+TGG | 0.603986 | 8_3:+11729098 | None:intergenic |
| TCCCACAGTGGCTCCAATGA+GGG | 0.606337 | 8_3:+11729743 | None:intergenic |
| CTCATTGGAGCCACTGTGGG+AGG | 0.607784 | 8_3:-11729741 | Msa1276840:intron |
| TAGGGTTGGTCGCGAGACAA+AGG | 0.608850 | 8_3:-11729206 | Msa1276840:CDS |
| ACAGTTTGAGCAGTGAAGCA+CGG | 0.611538 | 8_3:+11730421 | None:intergenic |
| TCAAAAGTATCTTTCAAGAG+TGG | 0.614683 | 8_3:+11730464 | None:intergenic |
| TCTTTCTTTAAAAGTGGACA+AGG | 0.621291 | 8_3:-11730492 | Msa1276840:CDS |
| AAATGCCGAACATGAGAGTG+AGG | 0.630583 | 8_3:+11728193 | None:intergenic |
| ATGCTCCCATTGGTGGTGGT+AGG | 0.631229 | 8_3:-11729086 | Msa1276840:CDS |
| GGTTGTTGTTCTGTTCTGAG+AGG | 0.631823 | 8_3:+11731269 | None:intergenic |
| CTAACTAACCTGAAAGGTGA+AGG | 0.632215 | 8_3:+11731145 | None:intergenic |
| AGATGGACAAAACCATCGAA+TGG | 0.633017 | 8_3:+11728351 | None:intergenic |
| CATTGGTGGTGGTAGGATAG+CGG | 0.635961 | 8_3:-11729079 | Msa1276840:CDS |
| AAGTAACTAACTAACCTGAA+AGG | 0.636648 | 8_3:+11731139 | None:intergenic |
| GGAGCTTCATTGCAAAGACA+AGG | 0.641496 | 8_3:-11728398 | Msa1276840:CDS |
| TGGGAGCATAACTCAAAGTG+GGG | 0.643586 | 8_3:+11729100 | None:intergenic |
| AAAACAAATGAGAGCAATGG+CGG | 0.644299 | 8_3:-11731241 | Msa1276840:exon |
| AGCCCTCATTGGAGCCACTG+TGG | 0.646086 | 8_3:-11729745 | Msa1276840:CDS |
| AGCTTTAGCCGAAACATGTG+AGG | 0.650728 | 8_3:-11729808 | Msa1276840:CDS |
| ACTATGACAAGTATATTGCA+AGG | 0.654467 | 8_3:-11728232 | Msa1276840:CDS |
| TTTAGCCGAAACATGTGAGG+CGG | 0.677113 | 8_3:-11729805 | Msa1276840:CDS |
| TTGGTCGCGAGACAAAGGAA+AGG | 0.686385 | 8_3:-11729201 | Msa1276840:CDS |
| GGGAGCATAACTCAAAGTGG+GGG | 0.697421 | 8_3:+11729101 | None:intergenic |
| AAAGGAAAGGAGAATTACAG+CGG | 0.729898 | 8_3:-11729188 | Msa1276840:CDS |
| TAGTACCTTACCTCCCACAG+TGG | 0.794975 | 8_3:+11729731 | None:intergenic |
| GCAATTACTCCAGATCAACG+CGG | 0.803672 | 8_3:-11729157 | Msa1276840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTACTTGTTAATTTAAT+TGG | - | chr8_3:11729606-11729625 | Msa1276840:intron | 10.0% |
| !! | ATTGTATAAAAACAGAAAAA+GGG | + | chr8_3:11728184-11728203 | None:intergenic | 15.0% |
| !! | AATTGTATAAAAACAGAAAA+AGG | + | chr8_3:11728185-11728204 | None:intergenic | 15.0% |
| !! | TACTCTTAAATTGTTTATTA+CGG | - | chr8_3:11729187-11729206 | Msa1276840:CDS | 15.0% |
| !!! | CATTTTATTTGTACTTTTTA+TGG | - | chr8_3:11729941-11729960 | Msa1276840:intron | 15.0% |
| !!! | TTATAACTCTAAAATGAAAT+TGG | + | chr8_3:11731245-11731264 | None:intergenic | 15.0% |
| !!! | ATTTCATTTTAGAGTTATAA+TGG | - | chr8_3:11731245-11731264 | Msa1276840:exon | 15.0% |
| !! | AATACATTTATAGACTATAG+TGG | - | chr8_3:11729129-11729148 | Msa1276840:CDS | 20.0% |
| !!! | TGTTAATTTAATTGGTTCAT+CGG | - | chr8_3:11729614-11729633 | Msa1276840:intron | 20.0% |
| !! | AGAAGTGAACAAATAAATAA+AGG | - | chr8_3:11729843-11729862 | Msa1276840:CDS | 20.0% |
| !! | CTAATTTCTAAGTTAAAAAG+TGG | - | chr8_3:11730190-11730209 | Msa1276840:intron | 20.0% |
| !!! | AATCTAATGTTGATTTTGTA+GGG | + | chr8_3:11730384-11730403 | None:intergenic | 20.0% |
| !!! | AAATCTAATGTTGATTTTGT+AGG | + | chr8_3:11730385-11730404 | None:intergenic | 20.0% |
| !! | ATAGCTTATATGAAAACAAT+TGG | + | chr8_3:11730611-11730630 | None:intergenic | 20.0% |
| !! | TCTAATATAAACTCTCAATA+AGG | + | chr8_3:11731132-11731151 | None:intergenic | 20.0% |
| !!! | GTTTTAAGAGAATACAAAAT+TGG | - | chr8_3:11731202-11731221 | Msa1276840:CDS | 20.0% |
| !!! | TGATAATGTATAACTTTGTT+TGG | + | chr8_3:11731291-11731310 | None:intergenic | 20.0% |
| !! | AGGATAAATGTTGGATTTTT+GGG | + | chr8_3:11727925-11727944 | None:intergenic | 25.0% |
| ! | TTTCATCATATACAAGACTT+TGG | - | chr8_3:11728140-11728159 | Msa1276840:three_prime_UTR | 25.0% |
| !! | AATTAAGTTGCTTATCCAAT+AGG | - | chr8_3:11728524-11728543 | Msa1276840:intron | 25.0% |
| ! | AGAAGATACACTAAAATACT+TGG | + | chr8_3:11728551-11728570 | None:intergenic | 25.0% |
| !! | TTTTAGTGTATCTTCTTTAC+TGG | - | chr8_3:11728555-11728574 | Msa1276840:intron | 25.0% |
| !! | AAACTTAACTAGTTTCCATA+AGG | + | chr8_3:11728585-11728604 | None:intergenic | 25.0% |
| ! | GTCAAAATAATGAAAATGTG+TGG | - | chr8_3:11728605-11728624 | Msa1276840:intron | 25.0% |
| !!! | AGTAATTTTTCAGTGAAATG+AGG | - | chr8_3:11728869-11728888 | Msa1276840:intron | 25.0% |
| !! | ATTTGAGTAAACTCTCATTT+TGG | - | chr8_3:11728902-11728921 | Msa1276840:CDS | 25.0% |
| !!! | GTGTCTTTTGATTAATTTCA+TGG | + | chr8_3:11729085-11729104 | None:intergenic | 25.0% |
| !!! | ATTTTTCTCTGACTTGAAAA+TGG | - | chr8_3:11729294-11729313 | Msa1276840:intron | 25.0% |
| ! | AGACTAAAACTTCATTTAGT+CGG | - | chr8_3:11729561-11729580 | Msa1276840:intron | 25.0% |
| !! | TTCATCGGTTGTATTAATAT+AGG | - | chr8_3:11729629-11729648 | Msa1276840:intron | 25.0% |
| !! | AGTTAAGATATTTTTCTACG+TGG | - | chr8_3:11729720-11729739 | Msa1276840:intron | 25.0% |
| ! | AGTGAACAAATAAATAAAGG+TGG | - | chr8_3:11729846-11729865 | Msa1276840:CDS | 25.0% |
| ! | ATACAGAAATCAGATATTCA+AGG | + | chr8_3:11729879-11729898 | None:intergenic | 25.0% |
| ! | CTGAATTTATTGATCTGATA+GGG | - | chr8_3:11729987-11730006 | Msa1276840:intron | 25.0% |
| !! | AAAGTGGAAAGAATTTTCTA+AGG | - | chr8_3:11730206-11730225 | Msa1276840:intron | 25.0% |
| ! | ACACATTAATAAGCGAAATA+GGG | + | chr8_3:11730347-11730366 | None:intergenic | 25.0% |
| !!! | TATAAGTTGATAGAACTCTA+TGG | - | chr8_3:11730514-11730533 | Msa1276840:intron | 25.0% |
| ! | ATTTGCACATTGTGTATTAT+AGG | - | chr8_3:11730792-11730811 | Msa1276840:intron | 25.0% |
| ! | TATTATTGAGACTGTAAAGT+TGG | - | chr8_3:11731099-11731118 | Msa1276840:intron | 25.0% |
| ! | GGATAAATGTTGGATTTTTG+GGG | + | chr8_3:11727924-11727943 | None:intergenic | 30.0% |
| ! | GAGGATAAATGTTGGATTTT+TGG | + | chr8_3:11727926-11727945 | None:intergenic | 30.0% |
| AAGTAACTAACTAACCTGAA+AGG | + | chr8_3:11728075-11728094 | None:intergenic | 30.0% | |
| ! | TTCAGGTTAGTTAGTTACTT+TGG | - | chr8_3:11728075-11728094 | Msa1276840:three_prime_UTR | 30.0% |
| !!! | GATTTTGAGTGTCATTTTGA+AGG | + | chr8_3:11728115-11728134 | None:intergenic | 30.0% |
| ! | AATAAGTTGAAAACAGCTCA+TGG | + | chr8_3:11728373-11728392 | None:intergenic | 30.0% |
| !! | GTTGTTTTCATAAGCTATCT+TGG | + | chr8_3:11728408-11728427 | None:intergenic | 30.0% |
| ACTAAAATACTTGGACCTAT+TGG | + | chr8_3:11728542-11728561 | None:intergenic | 30.0% | |
| AATAATGAAAATGTGTGGTG+TGG | - | chr8_3:11728610-11728629 | Msa1276840:intron | 30.0% | |
| ! | CACTTGTCTTTCTTTAAAAG+TGG | - | chr8_3:11728713-11728732 | Msa1276840:intron | 30.0% |
| ! | TCTTTCTTTAAAAGTGGACA+AGG | - | chr8_3:11728719-11728738 | Msa1276840:intron | 30.0% |
| !! | TCAAAAGTATCTTTCAAGAG+TGG | + | chr8_3:11728750-11728769 | None:intergenic | 30.0% |
| ! | TCTTGAAAGATACTTTTGAC+CGG | - | chr8_3:11728751-11728770 | Msa1276840:intron | 30.0% |
| ACAATCAACGATTATAGTGA+CGG | + | chr8_3:11728947-11728966 | None:intergenic | 30.0% | |
| GTATCTTTCTTTACTGAGTT+TGG | - | chr8_3:11728994-11729013 | Msa1276840:CDS | 30.0% | |
| ACTAATGAAATACACATCTG+AGG | + | chr8_3:11729021-11729040 | None:intergenic | 30.0% | |
| ! | CAAAGCAGGATTTTAGATAA+GGG | + | chr8_3:11729214-11729233 | None:intergenic | 30.0% |
| ACAATCGTTTGTGAAGATAT+TGG | + | chr8_3:11729266-11729285 | None:intergenic | 30.0% | |
| ! | ATCTTCACAAACGATTGTTT+TGG | - | chr8_3:11729268-11729287 | Msa1276840:intron | 30.0% |
| ! | AGCAATGAATGGAATCTTTT+TGG | + | chr8_3:11729341-11729360 | None:intergenic | 30.0% |
| !!! | GTTTTAGTCTTAAAGCACTT+GGG | + | chr8_3:11729551-11729570 | None:intergenic | 30.0% |
| !!! | AGTTTTAGTCTTAAAGCACT+TGG | + | chr8_3:11729552-11729571 | None:intergenic | 30.0% |
| AAAACTTCATTTAGTCGGAT+CGG | - | chr8_3:11729566-11729585 | Msa1276840:intron | 30.0% | |
| ACCTAACTAGTAAACACATT+GGG | + | chr8_3:11729766-11729785 | None:intergenic | 30.0% | |
| AACCTAACTAGTAAACACAT+TGG | + | chr8_3:11729767-11729786 | None:intergenic | 30.0% | |
| AAGTATAACAGAAAATGCGT+TGG | - | chr8_3:11729810-11729829 | Msa1276840:CDS | 30.0% | |
| CTGTATATCACAAGTTAAAC+CGG | - | chr8_3:11729893-11729912 | Msa1276840:intron | 30.0% | |
| CCTATCAGATCAATAAATTC+AGG | + | chr8_3:11729989-11730008 | None:intergenic | 30.0% | |
| CCTGAATTTATTGATCTGAT+AGG | - | chr8_3:11729986-11730005 | Msa1276840:intron | 30.0% | |
| ATTTATTGATCTGATAGGGT+TGG | - | chr8_3:11729991-11730010 | Msa1276840:intron | 30.0% | |
| GAATATTAAGGATCCTATTG+AGG | - | chr8_3:11730285-11730304 | Msa1276840:intron | 30.0% | |
| CACACATTAATAAGCGAAAT+AGG | + | chr8_3:11730348-11730367 | None:intergenic | 30.0% | |
| !! | TACATAAGCACTGATATGAT+AGG | + | chr8_3:11730496-11730515 | None:intergenic | 30.0% |
| !! | GCTGTTTTCATAAACTGTTT+TGG | - | chr8_3:11730633-11730652 | Msa1276840:intron | 30.0% |
| AAATATACTCAGGGTCTATT+TGG | + | chr8_3:11730776-11730795 | None:intergenic | 30.0% | |
| ACAATGTGCAAATATACTCA+GGG | + | chr8_3:11730785-11730804 | None:intergenic | 30.0% | |
| ACTATGACAAGTATATTGCA+AGG | - | chr8_3:11730979-11730998 | Msa1276840:intron | 30.0% | |
| TATGTTCAATCTCTAGTATG+TGG | - | chr8_3:11731160-11731179 | Msa1276840:CDS | 30.0% | |
| AATGGTTGTAGTATCATCTA+TGG | - | chr8_3:11731263-11731282 | Msa1276840:five_prime_UTR | 30.0% | |
| GGGATAACAATGATAATCCT+TGG | + | chr8_3:11727904-11727923 | None:intergenic | 35.0% | |
| !! | TGTTCTGAGAGGATAAATGT+TGG | + | chr8_3:11727934-11727953 | None:intergenic | 35.0% |
| !!! | TGCTCTCATTTGTTTTGCAA+AGG | + | chr8_3:11727966-11727985 | None:intergenic | 35.0% |
| TGCAAAACAAATGAGAGCAA+TGG | - | chr8_3:11727967-11727986 | Msa1276840:three_prime_UTR | 35.0% | |
| AAAACAAATGAGAGCAATGG+CGG | - | chr8_3:11727970-11727989 | Msa1276840:three_prime_UTR | 35.0% | |
| !! | ATTTTGAAGGAACAAGAGGA+AGG | + | chr8_3:11728102-11728121 | None:intergenic | 35.0% |
| !!! | TGTCATTTTGAAGGAACAAG+AGG | + | chr8_3:11728106-11728125 | None:intergenic | 35.0% |
| !! | TTGGACTTGTTGAATGAATC+AGG | - | chr8_3:11728684-11728703 | Msa1276840:intron | 35.0% |
| ATTAATCAAAAGACACCCTC+AGG | - | chr8_3:11729089-11729108 | Msa1276840:CDS | 35.0% | |
| TTAATCAAAAGACACCCTCA+GGG | - | chr8_3:11729090-11729109 | Msa1276840:CDS | 35.0% | |
| !! | AATTACAAAAGCATCCCTGA+GGG | + | chr8_3:11729107-11729126 | None:intergenic | 35.0% |
| !! | AAATTACAAAAGCATCCCTG+AGG | + | chr8_3:11729108-11729127 | None:intergenic | 35.0% |
| ! | CCAAAGCAGGATTTTAGATA+AGG | + | chr8_3:11729215-11729234 | None:intergenic | 35.0% |
| ! | CCTTATCTAAAATCCTGCTT+TGG | - | chr8_3:11729212-11729231 | Msa1276840:intron | 35.0% |
| !! | ACAGTTGATAATTCCAAAGC+AGG | + | chr8_3:11729228-11729247 | None:intergenic | 35.0% |
| TTGAAAATGGTTGCCTTATC+AGG | - | chr8_3:11729307-11729326 | Msa1276840:intron | 35.0% | |
| AAAGGAAAGGAGAATTACAG+CGG | - | chr8_3:11730023-11730042 | Msa1276840:intron | 35.0% | |
| AAATTAGCTCCTGCTTCTTT+GGG | + | chr8_3:11730177-11730196 | None:intergenic | 35.0% | |
| TGAGCTTGCACAGAATATTA+AGG | - | chr8_3:11730273-11730292 | Msa1276840:intron | 35.0% | |
| TCCTATTGAGGAGAAAAAAG+CGG | - | chr8_3:11730297-11730316 | Msa1276840:intron | 35.0% | |
| ! | GAGAATAATTTTGCCGTGTT+TGG | - | chr8_3:11730435-11730454 | Msa1276840:CDS | 35.0% |
| CACAATGTGCAAATATACTC+AGG | + | chr8_3:11730786-11730805 | None:intergenic | 35.0% | |
| ! | TGCAAAGACAAGGAAAGTAT+CGG | - | chr8_3:11730823-11730842 | Msa1276840:intron | 35.0% |
| TGCTGTTAAATACCATTCGA+TGG | - | chr8_3:11730848-11730867 | Msa1276840:intron | 35.0% | |
| TGACAAGTATATTGCAAGGT+TGG | - | chr8_3:11730983-11731002 | Msa1276840:intron | 35.0% | |
| GTATATTGCAAGGTTGGAAA+AGG | - | chr8_3:11730989-11731008 | Msa1276840:intron | 35.0% | |
| TCTAGTATGTGGAATGAATG+AGG | - | chr8_3:11731171-11731190 | Msa1276840:CDS | 35.0% | |
| AATTGGTCCATGAAAGATGT+TGG | - | chr8_3:11731219-11731238 | Msa1276840:CDS | 35.0% | |
| AAATTGGCCAACATCTTTCA+TGG | + | chr8_3:11731229-11731248 | None:intergenic | 35.0% | |
| CTAACTAACCTGAAAGGTGA+AGG | + | chr8_3:11728069-11728088 | None:intergenic | 40.0% | |
| TAGCACTAGTTCATCAACCA+AGG | - | chr8_3:11728255-11728274 | Msa1276840:CDS | 40.0% | |
| AGCACTAGTTCATCAACCAA+GGG | - | chr8_3:11728256-11728275 | Msa1276840:CDS | 40.0% | |
| ! | TCATCAACCAAGGGCATATT+TGG | - | chr8_3:11728265-11728284 | Msa1276840:CDS | 40.0% |
| AGTCAATCCAAATATGCCCT+TGG | + | chr8_3:11728275-11728294 | None:intergenic | 40.0% | |
| AGACTGTTTGAGAAAGCTTG+TGG | - | chr8_3:11728329-11728348 | Msa1276840:CDS | 40.0% | |
| AAGACAGTGATACTCACATG+AGG | - | chr8_3:11728661-11728680 | Msa1276840:intron | 40.0% | |
| !! | CGGTTGGAATTTTAGAAGAC+CGG | + | chr8_3:11728773-11728792 | None:intergenic | 40.0% |
| TTTGGCATGTCATCCTGATA+AGG | + | chr8_3:11729323-11729342 | None:intergenic | 40.0% | |
| TCGCAAGAAACAGCAATGAA+TGG | + | chr8_3:11729352-11729371 | None:intergenic | 40.0% | |
| GTTTCGGCTAAAGCTTTACA+AGG | + | chr8_3:11729398-11729417 | None:intergenic | 40.0% | |
| TAAACACATTGGGCTCTCAA+AGG | + | chr8_3:11729756-11729775 | None:intergenic | 40.0% | |
| GCCCAATGTGTTTACTAGTT+AGG | - | chr8_3:11729762-11729781 | Msa1276840:CDS | 40.0% | |
| !! | CCACATTTTAGTAAAAGCGC+CGG | + | chr8_3:11729915-11729934 | None:intergenic | 40.0% |
| ! | ATGGGAGCATAACTCAAAGT+GGG | + | chr8_3:11730115-11730134 | None:intergenic | 40.0% |
| ! | AATGGGAGCATAACTCAAAG+TGG | + | chr8_3:11730116-11730135 | None:intergenic | 40.0% |
| ! | ACTTTGAGTTATGCTCCCAT+TGG | - | chr8_3:11730115-11730134 | Msa1276840:intron | 40.0% |
| TATTGTTGACCCAAAGAAGC+AGG | - | chr8_3:11730165-11730184 | Msa1276840:intron | 40.0% | |
| GAAATTAGCTCCTGCTTCTT+TGG | + | chr8_3:11730178-11730197 | None:intergenic | 40.0% | |
| CAACGAGTGAAGAATTCACA+AGG | - | chr8_3:11730413-11730432 | Msa1276840:intron | 40.0% | |
| TCGAGCTGTTTATCCAAACA+CGG | + | chr8_3:11730451-11730470 | None:intergenic | 40.0% | |
| !! | GCAAAGACAAGGAAAGTATC+GGG | - | chr8_3:11730824-11730843 | Msa1276840:intron | 40.0% |
| AGATGGACAAAACCATCGAA+TGG | + | chr8_3:11730863-11730882 | None:intergenic | 40.0% | |
| ! | TTGTCCATCTCTGAAAGAGA+AGG | - | chr8_3:11730873-11730892 | Msa1276840:intron | 40.0% |
| TTCTCCTTCTCTTTCAGAGA+TGG | + | chr8_3:11730880-11730899 | None:intergenic | 40.0% | |
| AAAGAGAAGGAGAAGACTCT+GGG | - | chr8_3:11730886-11730905 | Msa1276840:intron | 40.0% | |
| CTAATCCTCACTCTCATGTT+CGG | - | chr8_3:11731013-11731032 | Msa1276840:intron | 40.0% | |
| ! | GGTTGTTGTTCTGTTCTGAG+AGG | + | chr8_3:11727945-11727964 | None:intergenic | 45.0% |
| AATTGAGGAAGTGGAGAGTG+AGG | + | chr8_3:11728028-11728047 | None:intergenic | 45.0% | |
| TTGGAGCAGAATTGAGGAAG+TGG | + | chr8_3:11728037-11728056 | None:intergenic | 45.0% | |
| ! | GTGTTGTTGGAGCAGAATTG+AGG | + | chr8_3:11728043-11728062 | None:intergenic | 45.0% |
| !! | AAGGTGAAGGTTGGTGTTGT+TGG | + | chr8_3:11728056-11728075 | None:intergenic | 45.0% |
| AACACCAACCTTCACCTTTC+AGG | - | chr8_3:11728058-11728077 | Msa1276840:three_prime_UTR | 45.0% | |
| CTAACCTGAAAGGTGAAGGT+TGG | + | chr8_3:11728065-11728084 | None:intergenic | 45.0% | |
| AAGCTATCTTGGAGAGCTCA+TGG | + | chr8_3:11728397-11728416 | None:intergenic | 45.0% | |
| TTCTTTACTGGCACGCCTTA+TGG | - | chr8_3:11728567-11728586 | Msa1276840:intron | 45.0% | |
| TGAAAATGTGTGGTGTGGTG+TGG | - | chr8_3:11728615-11728634 | Msa1276840:intron | 45.0% | |
| CAGTGATACTCACATGAGGT+TGG | - | chr8_3:11728665-11728684 | Msa1276840:intron | 45.0% | |
| ACAGTTTGAGCAGTGAAGCA+CGG | + | chr8_3:11728793-11728812 | None:intergenic | 45.0% | |
| GCTTCACTGCTCAAACTGTA+AGG | - | chr8_3:11728794-11728813 | Msa1276840:intron | 45.0% | |
| ATTCTCATCCCTAATGTGCG+AGG | + | chr8_3:11729160-11729179 | None:intergenic | 45.0% | |
| ! | AGCTTTAGCCGAAACATGTG+AGG | - | chr8_3:11729403-11729422 | Msa1276840:intron | 45.0% |
| TTTAGCCGAAACATGTGAGG+CGG | - | chr8_3:11729406-11729425 | Msa1276840:intron | 45.0% | |
| GTTATCCGCCTCACATGTTT+CGG | + | chr8_3:11729414-11729433 | None:intergenic | 45.0% | |
| ! | CCGGCGCTTTTACTAAAATG+TGG | - | chr8_3:11729912-11729931 | Msa1276840:intron | 45.0% |
| GCAATTACTCCAGATCAACG+CGG | - | chr8_3:11730054-11730073 | Msa1276840:intron | 45.0% | |
| ! | ATAACTCAAAGTGGGGGCAT+AGG | + | chr8_3:11730107-11730126 | None:intergenic | 45.0% |
| ! | TGGGAGCATAACTCAAAGTG+GGG | + | chr8_3:11730114-11730133 | None:intergenic | 45.0% |
| TTGAGTTATGCTCCCATTGG+TGG | - | chr8_3:11730118-11730137 | Msa1276840:intron | 45.0% | |
| !!! | GCCGCTTTTTTCTCCTCAAT+AGG | + | chr8_3:11730301-11730320 | None:intergenic | 45.0% |
| GGAGCTTCATTGCAAAGACA+AGG | - | chr8_3:11730813-11730832 | Msa1276840:intron | 45.0% | |
| GAAAGAGAAGGAGAAGACTC+TGG | - | chr8_3:11730885-11730904 | Msa1276840:intron | 45.0% | |
| GCTGATTGTTACACTGAGCT+TGG | - | chr8_3:11730933-11730952 | Msa1276840:intron | 45.0% | |
| TTGGAGACCTTGAGAAAGCA+GGG | - | chr8_3:11730952-11730971 | Msa1276840:intron | 45.0% | |
| AGTATTGCCCTGCTTTCTCA+AGG | + | chr8_3:11730962-11730981 | None:intergenic | 45.0% | |
| AAATGCCGAACATGAGAGTG+AGG | + | chr8_3:11731021-11731040 | None:intergenic | 45.0% | |
| AATGAGAGCAATGGCGGTTG+TGG | - | chr8_3:11727976-11727995 | Msa1276840:three_prime_UTR | 50.0% | |
| GTGAGGACGAGAGATGAAAC+AGG | + | chr8_3:11728011-11728030 | None:intergenic | 50.0% | |
| TGGTGTGGTGTGGTGTGATA+TGG | - | chr8_3:11728625-11728644 | Msa1276840:intron | 50.0% | |
| TTTGAGCAGTGAAGCACGGT+TGG | + | chr8_3:11728789-11728808 | None:intergenic | 50.0% | |
| AGGGCTACTGCTAGCAGTAT+AGG | + | chr8_3:11729452-11729471 | None:intergenic | 50.0% | |
| TAGTACCTTACCTCCCACAG+TGG | + | chr8_3:11729483-11729502 | None:intergenic | 50.0% | |
| TTGGTCGCGAGACAAAGGAA+AGG | - | chr8_3:11730010-11730029 | Msa1276840:intron | 50.0% | |
| TCCAGATCAACGCGGCTTTA+AGG | - | chr8_3:11730062-11730081 | Msa1276840:intron | 50.0% | |
| ! | TCCTTAAAGCCGCGTTGATC+TGG | + | chr8_3:11730066-11730085 | None:intergenic | 50.0% |
| ! | GGGAGCATAACTCAAAGTGG+GGG | + | chr8_3:11730113-11730132 | None:intergenic | 50.0% |
| AGTTATGCTCCCATTGGTGG+TGG | - | chr8_3:11730121-11730140 | Msa1276840:intron | 50.0% | |
| GCTATCCTACCACCACCAAT+GGG | + | chr8_3:11730133-11730152 | None:intergenic | 50.0% | |
| !! | CATTGGTGGTGGTAGGATAG+CGG | - | chr8_3:11730132-11730151 | Msa1276840:intron | 50.0% |
| AACTCCGTGAACGCTCTATC+TGG | + | chr8_3:11730241-11730260 | None:intergenic | 50.0% | |
| AAAAAAGCGGCTCGAGGTCT+AGG | - | chr8_3:11730310-11730329 | Msa1276840:intron | 50.0% | |
| AAGCCTTAGCCCACTAAGTG+GGG | + | chr8_3:11730563-11730582 | None:intergenic | 50.0% | |
| CAAGCCTTAGCCCACTAAGT+GGG | + | chr8_3:11730564-11730583 | None:intergenic | 50.0% | |
| !! | TCTGGGAGCACAGAAGCTTT+TGG | - | chr8_3:11730903-11730922 | Msa1276840:intron | 50.0% |
| !! | CTGGGAGCACAGAAGCTTTT+GGG | - | chr8_3:11730904-11730923 | Msa1276840:intron | 50.0% |
| !! | TGGGAGCACAGAAGCTTTTG+GGG | - | chr8_3:11730905-11730924 | Msa1276840:intron | 50.0% |
| CTTGGAGACCTTGAGAAAGC+AGG | - | chr8_3:11730951-11730970 | Msa1276840:intron | 50.0% | |
| TGGCACTGCCTCGCACATTA+GGG | - | chr8_3:11729149-11729168 | Msa1276840:CDS | 55.0% | |
| CTGCTAGCAGTAGCCCTCAT+TGG | - | chr8_3:11729455-11729474 | Msa1276840:intron | 55.0% | |
| TCCCACAGTGGCTCCAATGA+GGG | + | chr8_3:11729471-11729490 | None:intergenic | 55.0% | |
| !! | TAGGGTTGGTCGCGAGACAA+AGG | - | chr8_3:11730005-11730024 | Msa1276840:intron | 55.0% |
| !! | ATGCTCCCATTGGTGGTGGT+AGG | - | chr8_3:11730125-11730144 | Msa1276840:intron | 55.0% |
| CGCTATCCTACCACCACCAA+TGG | + | chr8_3:11730134-11730153 | None:intergenic | 55.0% | |
| ! | GCAGCCAGATAGAGCGTTCA+CGG | - | chr8_3:11730234-11730253 | Msa1276840:intron | 55.0% |
| GAGGAGAAAAAAGCGGCTCG+AGG | - | chr8_3:11730304-11730323 | Msa1276840:intron | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+GGG | + | chr8_3:11730551-11730570 | None:intergenic | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr8_3:11730551-11730570 | Msa1276840:intron | 55.0% | |
| CTTAGCCCACTAAGTGGGGT+CGG | + | chr8_3:11730559-11730578 | None:intergenic | 55.0% | |
| CCAAGCCTTAGCCCACTAAG+TGG | + | chr8_3:11730565-11730584 | None:intergenic | 55.0% | |
| !! | CCACTTAGTGGGCTAAGGCT+TGG | - | chr8_3:11730562-11730581 | Msa1276840:intron | 55.0% |
| GTGGCACTGCCTCGCACATT+AGG | - | chr8_3:11729148-11729167 | Msa1276840:CDS | 60.0% | |
| AGCCCTCATTGGAGCCACTG+TGG | - | chr8_3:11729466-11729485 | Msa1276840:intron | 60.0% | |
| GCCCTCATTGGAGCCACTGT+GGG | - | chr8_3:11729467-11729486 | Msa1276840:intron | 60.0% | |
| CTCCCACAGTGGCTCCAATG+AGG | + | chr8_3:11729472-11729491 | None:intergenic | 60.0% | |
| CTCATTGGAGCCACTGTGGG+AGG | - | chr8_3:11729470-11729489 | Msa1276840:intron | 60.0% | |
| TGGAGCCACTGTGGGAGGTA+AGG | - | chr8_3:11729475-11729494 | Msa1276840:intron | 60.0% | |
| CACTAAGTGGGGTCGGCTAC+AGG | + | chr8_3:11730552-11730571 | None:intergenic | 60.0% | |
| CTGTAGCCGACCCCACTTAG+TGG | - | chr8_3:11730550-11730569 | Msa1276840:intron | 60.0% | |
| !! | CGACCCCACTTAGTGGGCTA+AGG | - | chr8_3:11730557-11730576 | Msa1276840:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 11727889 | 11731344 | 11727889 | ID=Msa1276840;Name=Msa1276840 |
| chr8_3 | mRNA | 11727889 | 11731344 | 11727889 | ID=Msa1276840-mRNA-1;Parent=Msa1276840;Name=Msa1276840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=88|1|1|1|1|1|5|328|300 |
| chr8_3 | exon | 11727889 | 11728419 | 11727889 | ID=Msa1276840-mRNA-1:exon:4793;Parent=Msa1276840-mRNA-1 |
| chr8_3 | exon | 11728902 | 11729225 | 11728902 | ID=Msa1276840-mRNA-1:exon:4792;Parent=Msa1276840-mRNA-1 |
| chr8_3 | exon | 11729742 | 11729904 | 11729742 | ID=Msa1276840-mRNA-1:exon:4791;Parent=Msa1276840-mRNA-1 |
| chr8_3 | exon | 11730418 | 11730527 | 11730418 | ID=Msa1276840-mRNA-1:exon:4790;Parent=Msa1276840-mRNA-1 |
| chr8_3 | exon | 11731154 | 11731344 | 11731154 | ID=Msa1276840-mRNA-1:exon:4789;Parent=Msa1276840-mRNA-1 |
| chr8_3 | five_prime_UTR | 11731257 | 11731344 | 11731257 | ID=Msa1276840-mRNA-1:five_prime_utr;Parent=Msa1276840-mRNA-1 |
| chr8_3 | CDS | 11731154 | 11731256 | 11731154 | ID=Msa1276840-mRNA-1:cds;Parent=Msa1276840-mRNA-1 |
| chr8_3 | CDS | 11730418 | 11730527 | 11730418 | ID=Msa1276840-mRNA-1:cds;Parent=Msa1276840-mRNA-1 |
| chr8_3 | CDS | 11729742 | 11729904 | 11729742 | ID=Msa1276840-mRNA-1:cds;Parent=Msa1276840-mRNA-1 |
| chr8_3 | CDS | 11728902 | 11729225 | 11728902 | ID=Msa1276840-mRNA-1:cds;Parent=Msa1276840-mRNA-1 |
| chr8_3 | CDS | 11728217 | 11728419 | 11728217 | ID=Msa1276840-mRNA-1:cds;Parent=Msa1276840-mRNA-1 |
| chr8_3 | three_prime_UTR | 11727889 | 11728216 | 11727889 | ID=Msa1276840-mRNA-1:three_prime_utr;Parent=Msa1276840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
