AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1084150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084150 MtrunA17_Chr7g0271611 96.000 250 9 1 1 249 1 250 2.61e-172 474
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084150 AT4G15510.1 64.659 249 76 5 10 247 40 287 4.26e-105 306
Msa1084150 AT4G15510.4 73.039 204 52 2 46 247 3 205 2.10e-103 298
Msa1084150 AT4G15510.5 73.039 204 52 2 46 247 3 205 2.10e-103 298
Msa1084150 AT4G15510.3 73.039 204 52 2 46 247 3 205 2.10e-103 298
Msa1084150 AT4G15510.2 69.595 148 40 3 35 178 72 218 1.73e-62 196

Find 76 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAAATAAATAAATATAAAA+AGG 0.137761 7_2:+84442087 Msa1084150:five_prime_UTR
CATTCAACTATCCATCAAAT+TGG 0.259378 7_2:+84442591 Msa1084150:CDS
GGCTTCGTTTCGAGCAAATA+AGG 0.293344 7_2:+84443250 Msa1084150:CDS
TGTACAAATGCAGCAAAGTT+TGG 0.296776 7_2:+84443412 Msa1084150:three_prime_UTR
CTTACTTGAATCCAATTTGA+TGG 0.303876 7_2:-84442602 None:intergenic
AGGAGGTACCTGTCTGTTCT+AGG 0.353510 7_2:+84443140 Msa1084150:CDS
GAATATGTTGATACATTTGA+TGG 0.354613 7_2:+84442563 Msa1084150:CDS
ATGGATGGAATTTACCGAAT+TGG 0.356971 7_2:-84442342 None:intergenic
ACAAGATAGGGTGGTGCGTT+TGG 0.360551 7_2:+84443109 Msa1084150:CDS
TGTTATGCTTATAACAAAAC+TGG 0.364964 7_2:-84443487 None:intergenic
TTGCTGTTATGCCACAAGAT+AGG 0.370954 7_2:+84443096 Msa1084150:CDS
TGGATGGAATTTACCGAATT+GGG 0.381934 7_2:-84442341 None:intergenic
CAAAACTGGTCAAGAATAGA+AGG 0.391626 7_2:-84443473 None:intergenic
CGAATTGGGTGTGGGAGAAA+TGG 0.397956 7_2:-84442327 None:intergenic
CTAGAATGTTGTAAATCAAA+AGG 0.409063 7_2:+84443286 Msa1084150:three_prime_UTR
CATTTCTCCCACACCCAATT+CGG 0.411234 7_2:+84442328 Msa1084150:CDS
GCCAATACAATCACAACAAC+GGG 0.413254 7_2:+84442254 Msa1084150:CDS
TATTCTTGATGAAAATATAT+CGG 0.441156 7_2:+84442661 Msa1084150:CDS
TCAACTGCCGTTGTTAATGA+TGG 0.449571 7_2:+84443363 Msa1084150:three_prime_UTR
TAGGGTGGTGCGTTTGGAAT+GGG 0.452062 7_2:+84443115 Msa1084150:CDS
ATTCAAGACTGTTCAAGACT+TGG 0.455381 7_2:+84442712 Msa1084150:CDS
GGAATTTACCGAATTGGGTG+TGG 0.465108 7_2:-84442336 None:intergenic
TTGGGTTCGCCTCAACAAGC+TGG 0.465683 7_2:+84442731 Msa1084150:CDS
GAATTCACATGATGCTAATA+CGG 0.467654 7_2:-84443607 None:intergenic
TCAAATTGGATTCAAGTAAG+AGG 0.471228 7_2:+84442605 Msa1084150:CDS
CGAGGGGAATGGAAGTGAAA+TGG 0.477757 7_2:-84442299 None:intergenic
ACTTACATTCTCTCCGACAT+TGG 0.478283 7_2:+84442506 Msa1084150:CDS
TTCAAGACTGTTCAAGACTT+GGG 0.478605 7_2:+84442713 Msa1084150:CDS
ACTCACACAGCAAAGGCAAA+TGG 0.481060 7_2:-84442218 None:intergenic
TGGGAGAAATGGAGCAGCGA+GGG 0.485253 7_2:-84442316 None:intergenic
CATATGATCTTTGACCCACT+TGG 0.485479 7_2:+84443639 Msa1084150:three_prime_UTR
ACCCGTTGTTGTGATTGTAT+TGG 0.491544 7_2:-84442255 None:intergenic
AAATGGAGCAGCGAGGGGAA+TGG 0.491691 7_2:-84442310 None:intergenic
TGCTGTTATGCCACAAGATA+GGG 0.492092 7_2:+84443097 Msa1084150:CDS
GTGAAATGGTGACATGGGTC+GGG 0.494548 7_2:-84442285 None:intergenic
GAGTTTATGTCCACTAGGCT+TGG 0.508538 7_2:+84442782 Msa1084150:CDS
GGTCAAAGATCATATGAATA+CGG 0.509948 7_2:-84443632 None:intergenic
TGGATTCAAGTAAGAGGTGC+TGG 0.510176 7_2:+84442611 Msa1084150:CDS
AGAAAATGTGTTTCAAGAAG+AGG 0.524955 7_2:+84443205 Msa1084150:CDS
TAGAATGTTGTAAATCAAAA+GGG 0.529208 7_2:+84443287 Msa1084150:three_prime_UTR
TCTGAGAGAGTTGCTGATGA+TGG 0.533806 7_2:+84442836 Msa1084150:CDS
ATAGGGTGGTGCGTTTGGAA+TGG 0.545277 7_2:+84443114 Msa1084150:CDS
CTTTGCTGTGTGAGTCGCAT+CGG 0.546482 7_2:+84442226 Msa1084150:five_prime_UTR
TGGGTTCGCCTCAACAAGCT+GGG 0.554823 7_2:+84442732 Msa1084150:CDS
TGGTGCGTTTGGAATGGGAT+AGG 0.554855 7_2:+84443120 Msa1084150:CDS
TTACTGAGTTTATGTCCACT+AGG 0.557448 7_2:+84442777 Msa1084150:CDS
GTCTTGAATTTCGAAGAAGA+AGG 0.559580 7_2:-84442698 None:intergenic
GTAATCTCAACTCATACAGT+TGG 0.560478 7_2:-84443175 None:intergenic
ACTTTCTTCCCAGCTTGTTG+AGG 0.564235 7_2:-84442740 None:intergenic
AGTGAAATGGTGACATGGGT+CGG 0.571672 7_2:-84442286 None:intergenic
ATCAGCAACTCTCTCAGAGG+TGG 0.572411 7_2:-84442831 None:intergenic
ATCGCATTGTGGTGTGCGAT+TGG 0.573753 7_2:+84442155 Msa1084150:five_prime_UTR
GAATTTACCGAATTGGGTGT+GGG 0.577884 7_2:-84442335 None:intergenic
TTTCAACTCCTAGAACAGAC+AGG 0.577991 7_2:-84443148 None:intergenic
TGTGTGAGTCGCATCGGCAA+TGG 0.582093 7_2:+84442232 Msa1084150:exon
ATGGAAGTGAAATGGTGACA+TGG 0.594314 7_2:-84442291 None:intergenic
GAGTGAACTTCGTCAAGTCA+TGG 0.596736 7_2:+84443229 Msa1084150:CDS
ACGTTTAACACCAAGCCTAG+TGG 0.600812 7_2:-84442792 None:intergenic
CAAATTGTACTATCAAGTTG+AGG 0.601868 7_2:+84442859 Msa1084150:CDS
TCGATTGTTCGGACTCCAAG+TGG 0.603948 7_2:-84443654 None:intergenic
TGCTAATGCTGTACCAATGT+CGG 0.609859 7_2:-84442519 None:intergenic
GGCCAATACAATCACAACAA+CGG 0.609937 7_2:+84442253 Msa1084150:CDS
CTTGCAAGATTAATATGCGA+TGG 0.617092 7_2:+84443511 Msa1084150:three_prime_UTR
GTGGGAGAAATGGAGCAGCG+AGG 0.622596 7_2:-84442317 None:intergenic
TGCGTTTGGAATGGGATAGG+AGG 0.627210 7_2:+84443123 Msa1084150:CDS
CAGCAAAGTTTGGATTGAGA+TGG 0.629144 7_2:+84443422 Msa1084150:three_prime_UTR
AAACGCACCACCCTATCTTG+TGG 0.644066 7_2:-84443107 None:intergenic
CGATGCGACTCACACAGCAA+AGG 0.646688 7_2:-84442225 None:intergenic
CGATTGTTCGGACTCCAAGT+GGG 0.656545 7_2:-84443653 None:intergenic
TGGAAGTGAAATGGTGACAT+GGG 0.658481 7_2:-84442290 None:intergenic
GGGAGAAATGGAGCAGCGAG+GGG 0.672235 7_2:-84442315 None:intergenic
ATCATCAGCAACTCTCTCAG+AGG 0.672975 7_2:-84442834 None:intergenic
ACTGCTACCATCATTAACAA+CGG 0.699682 7_2:-84443370 None:intergenic
TGTTATGCCACAAGATAGGG+TGG 0.714139 7_2:+84443100 Msa1084150:CDS
ACATATTCACGAAACACACG+AGG 0.719885 7_2:-84442548 None:intergenic
AGATGGAAAGAATCGCATTG+TGG 0.729191 7_2:+84442144 Msa1084150:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATAAATAAATATAAAA+AGG + chr7_2:84442087-84442106 Msa1084150:five_prime_UTR 0.0%
!! AAAATAAATAAATATAAAAA+GGG + chr7_2:84442088-84442107 Msa1084150:five_prime_UTR 0.0%
!! TAAAATAAATAAATATAAAA+AGG + chr7_2:84442087-84442106 Msa1084150:five_prime_UTR 0.0%
!! AAAATAAATAAATATAAAAA+GGG + chr7_2:84442088-84442107 Msa1084150:five_prime_UTR 0.0%
!!! ATATTTTCATCAAGAATATA+AGG - chr7_2:84442659-84442678 None:intergenic 15.0%
!! TATTCTTGATGAAAATATAT+CGG + chr7_2:84442661-84442680 Msa1084150:CDS 15.0%
!!! ATATTTTCATCAAGAATATA+AGG - chr7_2:84442659-84442678 None:intergenic 15.0%
!! TATTCTTGATGAAAATATAT+CGG + chr7_2:84442661-84442680 Msa1084150:CDS 15.0%
!! ACGTAATTTAGAAAGAAAAA+AGG + chr7_2:84442117-84442136 Msa1084150:five_prime_UTR 20.0%
!! AAATAAAATAATTGTGACAG+AGG - chr7_2:84442382-84442401 None:intergenic 20.0%
!! TACATTTATCAGAAAAATTG+TGG + chr7_2:84442888-84442907 Msa1084150:intron 20.0%
!! TAGAATGTTGTAAATCAAAA+GGG + chr7_2:84443287-84443306 Msa1084150:three_prime_UTR 20.0%
!! ACGTAATTTAGAAAGAAAAA+AGG + chr7_2:84442117-84442136 Msa1084150:five_prime_UTR 20.0%
!! AAATAAAATAATTGTGACAG+AGG - chr7_2:84442382-84442401 None:intergenic 20.0%
!! TACATTTATCAGAAAAATTG+TGG + chr7_2:84442888-84442907 Msa1084150:intron 20.0%
!! TAGAATGTTGTAAATCAAAA+GGG + chr7_2:84443287-84443306 Msa1084150:three_prime_UTR 20.0%
! GAATATGTTGATACATTTGA+TGG + chr7_2:84442563-84442582 Msa1084150:CDS 25.0%
! CTAGAATGTTGTAAATCAAA+AGG + chr7_2:84443286-84443305 Msa1084150:three_prime_UTR 25.0%
! TGTTATGCTTATAACAAAAC+TGG - chr7_2:84443490-84443509 None:intergenic 25.0%
! GAATATGTTGATACATTTGA+TGG + chr7_2:84442563-84442582 Msa1084150:CDS 25.0%
! CTAGAATGTTGTAAATCAAA+AGG + chr7_2:84443286-84443305 Msa1084150:three_prime_UTR 25.0%
! TGTTATGCTTATAACAAAAC+TGG - chr7_2:84443490-84443509 None:intergenic 25.0%
!!! CTCTTCTCTTTTTTAGCATT+TGG + chr7_2:84442059-84442078 Msa1084150:five_prime_UTR 30.0%
GAAAGAAAAAAGGATTGAGA+TGG + chr7_2:84442127-84442146 Msa1084150:five_prime_UTR 30.0%
!! AATGACATTGCTTTTCTTCT+AGG - chr7_2:84442476-84442495 None:intergenic 30.0%
CATTCAACTATCCATCAAAT+TGG + chr7_2:84442591-84442610 Msa1084150:CDS 30.0%
CTTACTTGAATCCAATTTGA+TGG - chr7_2:84442605-84442624 None:intergenic 30.0%
TCAAATTGGATTCAAGTAAG+AGG + chr7_2:84442605-84442624 Msa1084150:CDS 30.0%
! CAAATTGTACTATCAAGTTG+AGG + chr7_2:84442859-84442878 Msa1084150:CDS 30.0%
CAAAACTTACGGTAATTTGA+GGG + chr7_2:84442935-84442954 Msa1084150:intron 30.0%
AAAACTTACGGTAATTTGAG+GGG + chr7_2:84442936-84442955 Msa1084150:intron 30.0%
! TCTTCTTGAAACACATTTTC+TGG - chr7_2:84443206-84443225 None:intergenic 30.0%
AGAAAATGTGTTTCAAGAAG+AGG + chr7_2:84443205-84443224 Msa1084150:CDS 30.0%
GAATTCACATGATGCTAATA+CGG - chr7_2:84443610-84443629 None:intergenic 30.0%
GGTCAAAGATCATATGAATA+CGG - chr7_2:84443635-84443654 None:intergenic 30.0%
AAAAGAGAAGAGACCTAATT+CGG - chr7_2:84442051-84442070 None:intergenic 30.0%
!!! CTCTTCTCTTTTTTAGCATT+TGG + chr7_2:84442059-84442078 Msa1084150:five_prime_UTR 30.0%
GAAAGAAAAAAGGATTGAGA+TGG + chr7_2:84442127-84442146 Msa1084150:five_prime_UTR 30.0%
!! AATGACATTGCTTTTCTTCT+AGG - chr7_2:84442476-84442495 None:intergenic 30.0%
CATTCAACTATCCATCAAAT+TGG + chr7_2:84442591-84442610 Msa1084150:CDS 30.0%
CTTACTTGAATCCAATTTGA+TGG - chr7_2:84442605-84442624 None:intergenic 30.0%
TCAAATTGGATTCAAGTAAG+AGG + chr7_2:84442605-84442624 Msa1084150:CDS 30.0%
! CAAATTGTACTATCAAGTTG+AGG + chr7_2:84442859-84442878 Msa1084150:CDS 30.0%
CAAAACTTACGGTAATTTGA+GGG + chr7_2:84442935-84442954 Msa1084150:intron 30.0%
AAAACTTACGGTAATTTGAG+GGG + chr7_2:84442936-84442955 Msa1084150:intron 30.0%
! TCTTCTTGAAACACATTTTC+TGG - chr7_2:84443206-84443225 None:intergenic 30.0%
AGAAAATGTGTTTCAAGAAG+AGG + chr7_2:84443205-84443224 Msa1084150:CDS 30.0%
GAATTCACATGATGCTAATA+CGG - chr7_2:84443610-84443629 None:intergenic 30.0%
GGTCAAAGATCATATGAATA+CGG - chr7_2:84443635-84443654 None:intergenic 30.0%
TGGATGGAATTTACCGAATT+GGG - chr7_2:84442344-84442363 None:intergenic 35.0%
ATGGATGGAATTTACCGAAT+TGG - chr7_2:84442345-84442364 None:intergenic 35.0%
!!! TGGTGCTGATATTTTCTTCA+GGG + chr7_2:84442631-84442650 Msa1084150:CDS 35.0%
GTCTTGAATTTCGAAGAAGA+AGG - chr7_2:84442701-84442720 None:intergenic 35.0%
ATTCAAGACTGTTCAAGACT+TGG + chr7_2:84442712-84442731 Msa1084150:CDS 35.0%
TTCAAGACTGTTCAAGACTT+GGG + chr7_2:84442713-84442732 Msa1084150:CDS 35.0%
TTACTGAGTTTATGTCCACT+AGG + chr7_2:84442777-84442796 Msa1084150:CDS 35.0%
CTCTGTTCTTGCAAAACTTA+CGG + chr7_2:84442924-84442943 Msa1084150:intron 35.0%
GCAAAACTTACGGTAATTTG+AGG + chr7_2:84442934-84442953 Msa1084150:intron 35.0%
!!! TTTGAGGGGTGTCTTTTATA+TGG + chr7_2:84442950-84442969 Msa1084150:intron 35.0%
! GGGTGTCTTTTATATGGTAA+TGG + chr7_2:84442956-84442975 Msa1084150:intron 35.0%
GTAATCTCAACTCATACAGT+TGG - chr7_2:84443178-84443197 None:intergenic 35.0%
ACTGCTACCATCATTAACAA+CGG - chr7_2:84443373-84443392 None:intergenic 35.0%
TGTACAAATGCAGCAAAGTT+TGG + chr7_2:84443412-84443431 Msa1084150:three_prime_UTR 35.0%
CAAAACTGGTCAAGAATAGA+AGG - chr7_2:84443476-84443495 None:intergenic 35.0%
CTTGCAAGATTAATATGCGA+TGG + chr7_2:84443511-84443530 Msa1084150:three_prime_UTR 35.0%
TGGATGGAATTTACCGAATT+GGG - chr7_2:84442344-84442363 None:intergenic 35.0%
ATGGATGGAATTTACCGAAT+TGG - chr7_2:84442345-84442364 None:intergenic 35.0%
!!! TGGTGCTGATATTTTCTTCA+GGG + chr7_2:84442631-84442650 Msa1084150:CDS 35.0%
GTCTTGAATTTCGAAGAAGA+AGG - chr7_2:84442701-84442720 None:intergenic 35.0%
ATTCAAGACTGTTCAAGACT+TGG + chr7_2:84442712-84442731 Msa1084150:CDS 35.0%
TTCAAGACTGTTCAAGACTT+GGG + chr7_2:84442713-84442732 Msa1084150:CDS 35.0%
TTACTGAGTTTATGTCCACT+AGG + chr7_2:84442777-84442796 Msa1084150:CDS 35.0%
CTCTGTTCTTGCAAAACTTA+CGG + chr7_2:84442924-84442943 Msa1084150:intron 35.0%
GCAAAACTTACGGTAATTTG+AGG + chr7_2:84442934-84442953 Msa1084150:intron 35.0%
!!! TTTGAGGGGTGTCTTTTATA+TGG + chr7_2:84442950-84442969 Msa1084150:intron 35.0%
! GGGTGTCTTTTATATGGTAA+TGG + chr7_2:84442956-84442975 Msa1084150:intron 35.0%
GTAATCTCAACTCATACAGT+TGG - chr7_2:84443178-84443197 None:intergenic 35.0%
ACTGCTACCATCATTAACAA+CGG - chr7_2:84443373-84443392 None:intergenic 35.0%
TGTACAAATGCAGCAAAGTT+TGG + chr7_2:84443412-84443431 Msa1084150:three_prime_UTR 35.0%
CAAAACTGGTCAAGAATAGA+AGG - chr7_2:84443476-84443495 None:intergenic 35.0%
CTTGCAAGATTAATATGCGA+TGG + chr7_2:84443511-84443530 Msa1084150:three_prime_UTR 35.0%
AGATGGAAAGAATCGCATTG+TGG + chr7_2:84442144-84442163 Msa1084150:five_prime_UTR 40.0%
GGCCAATACAATCACAACAA+CGG + chr7_2:84442253-84442272 Msa1084150:CDS 40.0%
GCCAATACAATCACAACAAC+GGG + chr7_2:84442254-84442273 Msa1084150:CDS 40.0%
ACCCGTTGTTGTGATTGTAT+TGG - chr7_2:84442258-84442277 None:intergenic 40.0%
TGGAAGTGAAATGGTGACAT+GGG - chr7_2:84442293-84442312 None:intergenic 40.0%
ATGGAAGTGAAATGGTGACA+TGG - chr7_2:84442294-84442313 None:intergenic 40.0%
GAATTTACCGAATTGGGTGT+GGG - chr7_2:84442338-84442357 None:intergenic 40.0%
GAGAAAGCTCATGAAATGGA+TGG - chr7_2:84442360-84442379 None:intergenic 40.0%
AGAGGAGAAAGCTCATGAAA+TGG - chr7_2:84442364-84442383 None:intergenic 40.0%
ACTTACATTCTCTCCGACAT+TGG + chr7_2:84442506-84442525 Msa1084150:CDS 40.0%
TGCTAATGCTGTACCAATGT+CGG - chr7_2:84442522-84442541 None:intergenic 40.0%
ACATATTCACGAAACACACG+AGG - chr7_2:84442551-84442570 None:intergenic 40.0%
!!! CTGGTGCTGATATTTTCTTC+AGG + chr7_2:84442630-84442649 Msa1084150:CDS 40.0%
!! TGTGTGTTGTTTGTGTTGCT+AGG + chr7_2:84443040-84443059 Msa1084150:intron 40.0%
! TTGCTGTTATGCCACAAGAT+AGG + chr7_2:84443096-84443115 Msa1084150:CDS 40.0%
TGCTGTTATGCCACAAGATA+GGG + chr7_2:84443097-84443116 Msa1084150:CDS 40.0%
TTTCAACTCCTAGAACAGAC+AGG - chr7_2:84443151-84443170 None:intergenic 40.0%
TCAACTGCCGTTGTTAATGA+TGG + chr7_2:84443363-84443382 Msa1084150:three_prime_UTR 40.0%
CAGCAAAGTTTGGATTGAGA+TGG + chr7_2:84443422-84443441 Msa1084150:three_prime_UTR 40.0%
CATATGATCTTTGACCCACT+TGG + chr7_2:84443639-84443658 Msa1084150:three_prime_UTR 40.0%
AGATGGAAAGAATCGCATTG+TGG + chr7_2:84442144-84442163 Msa1084150:five_prime_UTR 40.0%
GGCCAATACAATCACAACAA+CGG + chr7_2:84442253-84442272 Msa1084150:CDS 40.0%
GCCAATACAATCACAACAAC+GGG + chr7_2:84442254-84442273 Msa1084150:CDS 40.0%
ACCCGTTGTTGTGATTGTAT+TGG - chr7_2:84442258-84442277 None:intergenic 40.0%
TGGAAGTGAAATGGTGACAT+GGG - chr7_2:84442293-84442312 None:intergenic 40.0%
ATGGAAGTGAAATGGTGACA+TGG - chr7_2:84442294-84442313 None:intergenic 40.0%
GAATTTACCGAATTGGGTGT+GGG - chr7_2:84442338-84442357 None:intergenic 40.0%
GAGAAAGCTCATGAAATGGA+TGG - chr7_2:84442360-84442379 None:intergenic 40.0%
AGAGGAGAAAGCTCATGAAA+TGG - chr7_2:84442364-84442383 None:intergenic 40.0%
ACTTACATTCTCTCCGACAT+TGG + chr7_2:84442506-84442525 Msa1084150:CDS 40.0%
TGCTAATGCTGTACCAATGT+CGG - chr7_2:84442522-84442541 None:intergenic 40.0%
ACATATTCACGAAACACACG+AGG - chr7_2:84442551-84442570 None:intergenic 40.0%
!!! CTGGTGCTGATATTTTCTTC+AGG + chr7_2:84442630-84442649 Msa1084150:CDS 40.0%
!! TGTGTGTTGTTTGTGTTGCT+AGG + chr7_2:84443040-84443059 Msa1084150:intron 40.0%
! TTGCTGTTATGCCACAAGAT+AGG + chr7_2:84443096-84443115 Msa1084150:CDS 40.0%
TGCTGTTATGCCACAAGATA+GGG + chr7_2:84443097-84443116 Msa1084150:CDS 40.0%
TTTCAACTCCTAGAACAGAC+AGG - chr7_2:84443151-84443170 None:intergenic 40.0%
TCAACTGCCGTTGTTAATGA+TGG + chr7_2:84443363-84443382 Msa1084150:three_prime_UTR 40.0%
CAGCAAAGTTTGGATTGAGA+TGG + chr7_2:84443422-84443441 Msa1084150:three_prime_UTR 40.0%
CATATGATCTTTGACCCACT+TGG + chr7_2:84443639-84443658 Msa1084150:three_prime_UTR 40.0%
ACTCACACAGCAAAGGCAAA+TGG - chr7_2:84442221-84442240 None:intergenic 45.0%
AGTGAAATGGTGACATGGGT+CGG - chr7_2:84442289-84442308 None:intergenic 45.0%
CATTTCTCCCACACCCAATT+CGG + chr7_2:84442328-84442347 Msa1084150:CDS 45.0%
GGAATTTACCGAATTGGGTG+TGG - chr7_2:84442339-84442358 None:intergenic 45.0%
! TGGATTCAAGTAAGAGGTGC+TGG + chr7_2:84442611-84442630 Msa1084150:CDS 45.0%
!! ACTTTCTTCCCAGCTTGTTG+AGG - chr7_2:84442743-84442762 None:intergenic 45.0%
GAGTTTATGTCCACTAGGCT+TGG + chr7_2:84442782-84442801 Msa1084150:CDS 45.0%
ACGTTTAACACCAAGCCTAG+TGG - chr7_2:84442795-84442814 None:intergenic 45.0%
ATCATCAGCAACTCTCTCAG+AGG - chr7_2:84442837-84442856 None:intergenic 45.0%
TCTGAGAGAGTTGCTGATGA+TGG + chr7_2:84442836-84442855 Msa1084150:CDS 45.0%
TGTTATGCCACAAGATAGGG+TGG + chr7_2:84443100-84443119 Msa1084150:CDS 45.0%
GAGTGAACTTCGTCAAGTCA+TGG + chr7_2:84443229-84443248 Msa1084150:CDS 45.0%
GGCTTCGTTTCGAGCAAATA+AGG + chr7_2:84443250-84443269 Msa1084150:CDS 45.0%
ACTCACACAGCAAAGGCAAA+TGG - chr7_2:84442221-84442240 None:intergenic 45.0%
AGTGAAATGGTGACATGGGT+CGG - chr7_2:84442289-84442308 None:intergenic 45.0%
CATTTCTCCCACACCCAATT+CGG + chr7_2:84442328-84442347 Msa1084150:CDS 45.0%
GGAATTTACCGAATTGGGTG+TGG - chr7_2:84442339-84442358 None:intergenic 45.0%
! TGGATTCAAGTAAGAGGTGC+TGG + chr7_2:84442611-84442630 Msa1084150:CDS 45.0%
!! ACTTTCTTCCCAGCTTGTTG+AGG - chr7_2:84442743-84442762 None:intergenic 45.0%
GAGTTTATGTCCACTAGGCT+TGG + chr7_2:84442782-84442801 Msa1084150:CDS 45.0%
ACGTTTAACACCAAGCCTAG+TGG - chr7_2:84442795-84442814 None:intergenic 45.0%
ATCATCAGCAACTCTCTCAG+AGG - chr7_2:84442837-84442856 None:intergenic 45.0%
TCTGAGAGAGTTGCTGATGA+TGG + chr7_2:84442836-84442855 Msa1084150:CDS 45.0%
TGTTATGCCACAAGATAGGG+TGG + chr7_2:84443100-84443119 Msa1084150:CDS 45.0%
GAGTGAACTTCGTCAAGTCA+TGG + chr7_2:84443229-84443248 Msa1084150:CDS 45.0%
GGCTTCGTTTCGAGCAAATA+AGG + chr7_2:84443250-84443269 Msa1084150:CDS 45.0%
!! AAATAAATAAATATAAAAAG+GGG + chr7_2:84442089-84442108 Msa1084150:five_prime_UTR 5.0%
!! AAATAAATAAATATAAAAAG+GGG + chr7_2:84442089-84442108 Msa1084150:five_prime_UTR 5.0%
ATCGCATTGTGGTGTGCGAT+TGG + chr7_2:84442155-84442174 Msa1084150:five_prime_UTR 50.0%
! CTTTGCTGTGTGAGTCGCAT+CGG + chr7_2:84442226-84442245 Msa1084150:five_prime_UTR 50.0%
GTGAAATGGTGACATGGGTC+GGG - chr7_2:84442288-84442307 None:intergenic 50.0%
CGAGGGGAATGGAAGTGAAA+TGG - chr7_2:84442302-84442321 None:intergenic 50.0%
CGAATTGGGTGTGGGAGAAA+TGG - chr7_2:84442330-84442349 None:intergenic 50.0%
ATCAGCAACTCTCTCAGAGG+TGG - chr7_2:84442834-84442853 None:intergenic 50.0%
AAACGCACCACCCTATCTTG+TGG - chr7_2:84443110-84443129 None:intergenic 50.0%
ACAAGATAGGGTGGTGCGTT+TGG + chr7_2:84443109-84443128 Msa1084150:CDS 50.0%
ATAGGGTGGTGCGTTTGGAA+TGG + chr7_2:84443114-84443133 Msa1084150:CDS 50.0%
! TAGGGTGGTGCGTTTGGAAT+GGG + chr7_2:84443115-84443134 Msa1084150:CDS 50.0%
! TGGTGCGTTTGGAATGGGAT+AGG + chr7_2:84443120-84443139 Msa1084150:CDS 50.0%
! TGCGTTTGGAATGGGATAGG+AGG + chr7_2:84443123-84443142 Msa1084150:CDS 50.0%
!! AGGAGGTACCTGTCTGTTCT+AGG + chr7_2:84443140-84443159 Msa1084150:CDS 50.0%
ATCGCATTGTGGTGTGCGAT+TGG + chr7_2:84442155-84442174 Msa1084150:five_prime_UTR 50.0%
! CTTTGCTGTGTGAGTCGCAT+CGG + chr7_2:84442226-84442245 Msa1084150:five_prime_UTR 50.0%
GTGAAATGGTGACATGGGTC+GGG - chr7_2:84442288-84442307 None:intergenic 50.0%
CGAGGGGAATGGAAGTGAAA+TGG - chr7_2:84442302-84442321 None:intergenic 50.0%
CGAATTGGGTGTGGGAGAAA+TGG - chr7_2:84442330-84442349 None:intergenic 50.0%
ATCAGCAACTCTCTCAGAGG+TGG - chr7_2:84442834-84442853 None:intergenic 50.0%
AAACGCACCACCCTATCTTG+TGG - chr7_2:84443110-84443129 None:intergenic 50.0%
ACAAGATAGGGTGGTGCGTT+TGG + chr7_2:84443109-84443128 Msa1084150:CDS 50.0%
ATAGGGTGGTGCGTTTGGAA+TGG + chr7_2:84443114-84443133 Msa1084150:CDS 50.0%
! TAGGGTGGTGCGTTTGGAAT+GGG + chr7_2:84443115-84443134 Msa1084150:CDS 50.0%
! TGGTGCGTTTGGAATGGGAT+AGG + chr7_2:84443120-84443139 Msa1084150:CDS 50.0%
! TGCGTTTGGAATGGGATAGG+AGG + chr7_2:84443123-84443142 Msa1084150:CDS 50.0%
!! AGGAGGTACCTGTCTGTTCT+AGG + chr7_2:84443140-84443159 Msa1084150:CDS 50.0%
CGATGCGACTCACACAGCAA+AGG - chr7_2:84442228-84442247 None:intergenic 55.0%
! TGTGTGAGTCGCATCGGCAA+TGG + chr7_2:84442232-84442251 Msa1084150:exon 55.0%
AAATGGAGCAGCGAGGGGAA+TGG - chr7_2:84442313-84442332 None:intergenic 55.0%
TGGGAGAAATGGAGCAGCGA+GGG - chr7_2:84442319-84442338 None:intergenic 55.0%
TTGGGTTCGCCTCAACAAGC+TGG + chr7_2:84442731-84442750 Msa1084150:CDS 55.0%
TGGGTTCGCCTCAACAAGCT+GGG + chr7_2:84442732-84442751 Msa1084150:CDS 55.0%
CGATGCGACTCACACAGCAA+AGG - chr7_2:84442228-84442247 None:intergenic 55.0%
! TGTGTGAGTCGCATCGGCAA+TGG + chr7_2:84442232-84442251 Msa1084150:exon 55.0%
AAATGGAGCAGCGAGGGGAA+TGG - chr7_2:84442313-84442332 None:intergenic 55.0%
TGGGAGAAATGGAGCAGCGA+GGG - chr7_2:84442319-84442338 None:intergenic 55.0%
TTGGGTTCGCCTCAACAAGC+TGG + chr7_2:84442731-84442750 Msa1084150:CDS 55.0%
TGGGTTCGCCTCAACAAGCT+GGG + chr7_2:84442732-84442751 Msa1084150:CDS 55.0%
GGGAGAAATGGAGCAGCGAG+GGG - chr7_2:84442318-84442337 None:intergenic 60.0%
GTGGGAGAAATGGAGCAGCG+AGG - chr7_2:84442320-84442339 None:intergenic 60.0%
GGGAGAAATGGAGCAGCGAG+GGG - chr7_2:84442318-84442337 None:intergenic 60.0%
GTGGGAGAAATGGAGCAGCG+AGG - chr7_2:84442320-84442339 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 84442051 84443667 84442051 ID=Msa1084150;Name=Msa1084150
chr7_2 mRNA 84442051 84443667 84442051 ID=Msa1084150-mRNA-1;Parent=Msa1084150;Name=Msa1084150-mRNA-1;_AED=0.09;_eAED=0.09;_QI=200|1|1|1|1|1|3|384|249
chr7_2 exon 84442051 84442349 84442051 ID=Msa1084150-mRNA-1:exon:22512;Parent=Msa1084150-mRNA-1
chr7_2 exon 84442452 84442880 84442452 ID=Msa1084150-mRNA-1:exon:22513;Parent=Msa1084150-mRNA-1
chr7_2 exon 84443062 84443667 84443062 ID=Msa1084150-mRNA-1:exon:22514;Parent=Msa1084150-mRNA-1
chr7_2 five_prime_UTR 84442051 84442250 84442051 ID=Msa1084150-mRNA-1:five_prime_utr;Parent=Msa1084150-mRNA-1
chr7_2 CDS 84442251 84442349 84442251 ID=Msa1084150-mRNA-1:cds;Parent=Msa1084150-mRNA-1
chr7_2 CDS 84442452 84442880 84442452 ID=Msa1084150-mRNA-1:cds;Parent=Msa1084150-mRNA-1
chr7_2 CDS 84443062 84443283 84443062 ID=Msa1084150-mRNA-1:cds;Parent=Msa1084150-mRNA-1
chr7_2 three_prime_UTR 84443284 84443667 84443284 ID=Msa1084150-mRNA-1:three_prime_utr;Parent=Msa1084150-mRNA-1
Gene Sequence

>Msa1084150

ATGGCCAATACAATCACAACAACGGGTTTTCTAGCCCGACCCATGTCACCATTTCACTTCCATTCCCCTCGCTGCTCCATTTCTCCCACACCCAATTCGATTAAAGCAGCTTTTGCAGTTCCTAGAAGAAAAGCAATGTCATTAATCTTATCAACTTACATTCTCTCCGACATTGGTACAGCATTAGCACAACAACCTCGTGTGTTTCGTGAATATGTTGATACATTTGATGGTTATTCATTCAACTATCCATCAAATTGGATTCAAGTAAGAGGTGCTGGTGCTGATATTTTCTTCAGGGATCCTTATATTCTTGATGAAAATATATCGGTCGAAGTTTCTTCGCCTTCTTCTTCGAAATTCAAGACTGTTCAAGACTTGGGTTCGCCTCAACAAGCTGGGAAGAAAGTTCTTGATCAGTATCTTACTGAGTTTATGTCCACTAGGCTTGGTGTTAAACGTGAATCTAATATTCTTTCCACCTCTGAGAGAGTTGCTGATGATGGCAAATTGTACTATCAAGTTGAGGCGAACATTAAGTCATATGCTAGTAACAACGAGCTTGCTGTTATGCCACAAGATAGGGTGGTGCGTTTGGAATGGGATAGGAGGTACCTGTCTGTTCTAGGAGTTGAAAACAACCAACTGTATGAGTTGAGATTACAAGTGCCAGAAAATGTGTTTCAAGAAGAGGAGAGTGAACTTCGTCAAGTCATGGCTTCGTTTCGAGCAAATAAGGTTGTTCGTTAG

Protein sequence

>Msa1084150

MANTITTTGFLARPMSPFHFHSPRCSISPTPNSIKAAFAVPRRKAMSLILSTYILSDIGTALAQQPRVFREYVDTFDGYSFNYPSNWIQVRGAGADIFFRDPYILDENISVEVSSPSSSKFKTVQDLGSPQQAGKKVLDQYLTEFMSTRLGVKRESNILSTSERVADDGKLYYQVEANIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQVPENVFQEEESELRQVMASFRANKVVR*