AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1376560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376560 MtrunA17_Chr3g0145921 95.819 574 13 5 1 565 1 572 0.0 1115
Msa1376560 MtrunA17_Chr7g0264491 35.641 390 245 2 178 562 164 552 1.60e-76 252
Msa1376560 MtrunA17_Chr1g0180881 34.752 423 264 6 147 562 139 556 1.09e-74 248
Msa1376560 MtrunA17_Chr1g0146481 31.008 387 247 5 185 563 173 547 1.70e-59 207
Msa1376560 MtrunA17_Chr3g0090001 32.558 301 198 1 264 564 108 403 9.46e-47 169
Msa1376560 MtrunA17_Chr4g0021031 31.475 305 199 6 267 564 201 502 1.70e-42 159
Msa1376560 MtrunA17_Chr3g0126401 29.191 346 217 8 239 564 177 514 1.75e-32 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1376560 AT1G08540.1 56.566 594 199 11 6 565 2 570 0.0 587
Msa1376560 AT2G36990.1 37.640 356 221 1 207 562 188 542 8.93e-78 256
Msa1376560 AT3G53920.1 34.405 311 198 2 254 563 264 569 2.46e-61 213
Msa1376560 AT5G13730.1 33.882 304 188 2 267 565 122 417 4.29e-52 184
Msa1376560 AT1G64860.1 29.775 356 228 9 217 564 159 500 9.59e-39 149
Msa1376560 AT5G24120.1 30.233 301 205 3 267 564 219 517 1.81e-37 145
Msa1376560 AT5G24120.3 30.233 301 205 3 267 564 219 517 1.81e-37 145
Msa1376560 AT5G24120.2 30.233 301 205 3 267 564 219 517 1.81e-37 145
Msa1376560 AT1G64860.2 29.677 310 197 8 217 518 159 455 5.01e-31 127
Msa1376560 AT3G53920.2 32.895 152 97 1 254 405 264 410 3.52e-28 117

Find 158 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGCTTCTTCTCTTCTCTTC+TGG 0.135700 tig0019825:-69556 None:intergenic
TCTAGAGATCTGGGAGCTTT+TGG 0.189205 tig0019825:-72493 None:intergenic
GCCAGAAGAGTCAGAGCTTC+TGG 0.195456 tig0019825:+70374 Msa1376560:CDS
CTAAGAAAACGTTTGAATTA+TGG 0.201254 tig0019825:+71269 Msa1376560:CDS
CGCTTCTTCTCTTCTCTTCT+GGG 0.212244 tig0019825:-69555 None:intergenic
TCTTCGGCTGTTTCAGCTTC+AGG 0.261013 tig0019825:-72664 None:intergenic
GTGTCTTGTAATTGTTGTTT+TGG 0.271370 tig0019825:-69832 None:intergenic
GAGAGAAACAGGTGATTAAA+TGG 0.275402 tig0019825:+72749 Msa1376560:CDS
CTGAAAATTTACTTCTCAAA+TGG 0.275681 tig0019825:+70141 Msa1376560:CDS
ATCAGTTGCTAAGAATTATC+AGG 0.278584 tig0019825:+71340 Msa1376560:CDS
CCCAGAAGCTCTGACTCTTC+TGG 0.279014 tig0019825:-70375 None:intergenic
AAACAGTTGTACAGTGAAAA+TGG 0.280971 tig0019825:+72394 Msa1376560:CDS
AGAGATAATGATGTTTAAAA+TGG 0.300023 tig0019825:+73169 Msa1376560:three_prime_UTR
CGGTGGGTAGGGATTCTGTC+TGG 0.304390 tig0019825:-69695 None:intergenic
AACTTTCTGTTCTAGAGATC+TGG 0.306670 tig0019825:-72503 None:intergenic
TATTGAAGTTAGCTTATTAC+AGG 0.306792 tig0019825:+72941 Msa1376560:three_prime_UTR
CATTAAGCAGTTCATGAAAA+AGG 0.308002 tig0019825:+72693 Msa1376560:CDS
CAGGTGATTAAATGGAGATT+TGG 0.320492 tig0019825:+72757 Msa1376560:CDS
AAATGAAATTTGTACGGTAT+TGG 0.326814 tig0019825:+69340 Msa1376560:five_prime_UTR
GAAGAAGTTGCCGAAGCAAC+TGG 0.327598 tig0019825:+72433 Msa1376560:CDS
AGAGAAGTATGATGCTTCTA+AGG 0.329199 tig0019825:+71766 Msa1376560:CDS
TTCAGAGAACTTAATTTCTT+CGG 0.359443 tig0019825:-70537 None:intergenic
CCAGCCCACATTTGCTCAAT+GGG 0.361480 tig0019825:+71217 Msa1376560:CDS
GTGGTTGTTGATTATGTTGT+GGG 0.362716 tig0019825:-70100 None:intergenic
TTAAAGTCATCCTCTTGGTT+GGG 0.376197 tig0019825:-70251 None:intergenic
GCTAAGAATTATCAGGGATC+TGG 0.378393 tig0019825:+71347 Msa1376560:CDS
AAGCTAACTTCAATATTTGA+TGG 0.382497 tig0019825:-72933 None:intergenic
TGAAGACACTGCAAGAGATT+GGG 0.385412 tig0019825:+72797 Msa1376560:CDS
TCGGCAACTTCTTCATCGTC+AGG 0.396141 tig0019825:-72424 None:intergenic
ATGAAGACACTGCAAGAGAT+TGG 0.396405 tig0019825:+72796 Msa1376560:CDS
GCTCAATGGGCTACAATGGC+AGG 0.402429 tig0019825:+71230 Msa1376560:CDS
AGTTCTCAACCTATGCTCAT+TGG 0.407789 tig0019825:+71795 Msa1376560:CDS
TGAAGATGTTCCATTATATC+TGG 0.410021 tig0019825:-70221 None:intergenic
TGAAAATTTACTTCTCAAAT+GGG 0.410175 tig0019825:+70142 Msa1376560:CDS
TTAATCACCTGTTTCTCTCT+AGG 0.411679 tig0019825:-72745 None:intergenic
TCTCAATCCTAGAGAGAAAC+AGG 0.412404 tig0019825:+72738 Msa1376560:CDS
GCCAGCCCACATTTGCTCAA+TGG 0.421203 tig0019825:+71216 Msa1376560:CDS
CCAGAAGAGTCAGAGCTTCT+GGG 0.422406 tig0019825:+70375 Msa1376560:CDS
TTAGTTAATTGTTCGGAGAA+AGG 0.423808 tig0019825:+69621 Msa1376560:five_prime_UTR
GATGATGATGGCGGTGGGTA+GGG 0.432222 tig0019825:-69706 None:intergenic
AAAGGACCTGGAAAAGGTAT+TGG 0.433707 tig0019825:+72711 Msa1376560:CDS
CATCGACAGCCCAGTTGCTT+CGG 0.435866 tig0019825:-72443 None:intergenic
TTATTCAAGAGAAAACAAAA+AGG 0.440516 tig0019825:+73015 Msa1376560:three_prime_UTR
GGCAATGGATACAGCATCTT+CGG 0.444268 tig0019825:-70183 None:intergenic
CTGCTTAATGAGCTGTTCTT+CGG 0.445939 tig0019825:-72680 None:intergenic
TGCTCATTGGTGGATTAAAC+AGG 0.447444 tig0019825:+71808 Msa1376560:CDS
ACCAGCAGGACCAGATATAA+TGG 0.448188 tig0019825:+70211 Msa1376560:CDS
GGTGGTGGAACCAGACTTGA+AGG 0.448899 tig0019825:-70420 None:intergenic
TGGGATGAGTCTGCAAGATC+TGG 0.448927 tig0019825:+71367 Msa1376560:CDS
GCTTAACAGTTCCACATGGT+GGG 0.453802 tig0019825:+72343 Msa1376560:intron
CTTCCCATTCGGATAAGAAA+AGG 0.454639 tig0019825:-69505 None:intergenic
GGAGTTTGCCTGAGAGACAT+AGG 0.455446 tig0019825:-69940 None:intergenic
GAGAACTTAATTTCTTCGGA+TGG 0.458689 tig0019825:-70533 None:intergenic
GGAAATGATGGGTGTAAGTA+GGG 0.462570 tig0019825:+72819 Msa1376560:CDS
TCATTTCATTCATTCATTCA+AGG 0.463108 tig0019825:-69583 None:intergenic
TAAGTTCTCTGAAGGAATAC+AGG 0.465978 tig0019825:+70547 Msa1376560:CDS
GATAATGATGTTTAAAATGG+AGG 0.467356 tig0019825:+73172 Msa1376560:three_prime_UTR
GGGAAATGATGGGTGTAAGT+AGG 0.467729 tig0019825:+72818 Msa1376560:CDS
CTTGAAGGAGACGATGTTTG+TGG 0.468675 tig0019825:-70405 None:intergenic
TCCATTATATCTGGTCCTGC+TGG 0.469713 tig0019825:-70212 None:intergenic
TAGTTAGTTAGTTAATTGTT+CGG 0.470287 tig0019825:+69614 Msa1376560:five_prime_UTR
GGATGCCGCGGGCTTGTAAG+AGG 0.472869 tig0019825:+71740 Msa1376560:CDS
TCCTGCTGGTCCAGTGGCAA+TGG 0.473175 tig0019825:-70198 None:intergenic
AGATCTCTAGAACAGAAAGT+TGG 0.474573 tig0019825:+72505 Msa1376560:CDS
ACCTTGGCCCTATGTCTCTC+AGG 0.475145 tig0019825:+69932 Msa1376560:CDS
AGCTAACTTCAATATTTGAT+GGG 0.478315 tig0019825:-72932 None:intergenic
AAGTAAGAGAAAGCAAATGA+AGG 0.478974 tig0019825:+73202 Msa1376560:three_prime_UTR
TTTCTTATCCGAATGGGAAG+GGG 0.479510 tig0019825:+69508 Msa1376560:five_prime_UTR
AACATCGTCTCCTTCAAGTC+TGG 0.484299 tig0019825:+70410 Msa1376560:CDS
ATTAAAGTCATCCTCTTGGT+TGG 0.488896 tig0019825:-70252 None:intergenic
GAGCATCAAATTTGAAATCA+AGG 0.489172 tig0019825:-69884 None:intergenic
CTAAGAATTATCAGGGATCT+GGG 0.490714 tig0019825:+71348 Msa1376560:CDS
GATCTCTAGAACAGAAAGTT+GGG 0.490872 tig0019825:+72506 Msa1376560:CDS
GGCTTAACAGTTCCACATGG+TGG 0.491941 tig0019825:+72342 Msa1376560:intron
ACTTTCTGTTCTAGAGATCT+GGG 0.492366 tig0019825:-72502 None:intergenic
GCAAGAGATTGGGGAAATGA+TGG 0.494350 tig0019825:+72807 Msa1376560:CDS
GGTGGGTAGGGATTCTGTCT+GGG 0.501734 tig0019825:-69694 None:intergenic
TCTCAACCTATGCTCATTGG+TGG 0.502003 tig0019825:+71798 Msa1376560:CDS
GGTAAAATTAGACAGAGGTA+AGG 0.503347 tig0019825:+69405 Msa1376560:five_prime_UTR
AGTAAGAGAAAGCAAATGAA+GGG 0.503463 tig0019825:+73203 Msa1376560:three_prime_UTR
GGTGGATTAAACAGGCAGTT+CGG 0.505718 tig0019825:+71816 Msa1376560:CDS
TCCATTGCCACTGGACCAGC+AGG 0.505748 tig0019825:+70197 Msa1376560:CDS
TGAAGCTCTTACTCTTGCTA+AGG 0.508265 tig0019825:+70028 Msa1376560:CDS
TAAAGTCATCCTCTTGGTTG+GGG 0.508635 tig0019825:-70250 None:intergenic
AAAATACTGCTGCAAATGCT+TGG 0.508949 tig0019825:-72899 None:intergenic
TTCTACAGATGAGGAGGAGG+AGG 0.510283 tig0019825:-69961 None:intergenic
TGATTCTACAGATGAGGAGG+AGG 0.513896 tig0019825:-69964 None:intergenic
TGGAGATTTGGTATGGATGA+TGG 0.516643 tig0019825:+72769 Msa1376560:CDS
CATCATTAAAGTCATCCTCT+TGG 0.522501 tig0019825:-70256 None:intergenic
ATCTGGTCCTGCTGGTCCAG+TGG 0.527770 tig0019825:-70204 None:intergenic
CCCATTGAGCAAATGTGGGC+TGG 0.527803 tig0019825:-71217 None:intergenic
GTTGTTCTTAAGTAACGCAA+TGG 0.530950 tig0019825:-70485 None:intergenic
TGATGATGATGGCGGTGGGT+AGG 0.533434 tig0019825:-69707 None:intergenic
TCAAGTCTGGTTCCACCACC+AGG 0.536953 tig0019825:+70423 Msa1376560:CDS
GATTAAATGGAGATTTGGTA+TGG 0.540033 tig0019825:+72762 Msa1376560:CDS
TTCTTATCCGAATGGGAAGG+GGG 0.540429 tig0019825:+69509 Msa1376560:five_prime_UTR
CTTAACAGTTCCACATGGTG+GGG 0.543723 tig0019825:+72344 Msa1376560:intron
GGTGGTTGTTGATTATGTTG+TGG 0.547660 tig0019825:-70101 None:intergenic
AGACTGAAAGTTTAAGACTC+TGG 0.548233 tig0019825:-72534 None:intergenic
TAAACAAAATGAAATTTGTA+CGG 0.548254 tig0019825:+69334 None:intergenic
CTTGAATAATGAAGAAAATG+TGG 0.549898 tig0019825:-73001 None:intergenic
TTCCCATTCGGATAAGAAAA+GGG 0.550030 tig0019825:-69504 None:intergenic
TGTAGCCCATTGAGCAAATG+TGG 0.553613 tig0019825:-71222 None:intergenic
CTCAATGGGCTACAATGGCA+GGG 0.555592 tig0019825:+71231 Msa1376560:CDS
TGGTTGTTGATTATGTTGTG+GGG 0.556371 tig0019825:-70099 None:intergenic
CAATTAAGAAGGGTGAAGGA+AGG 0.557782 tig0019825:+69384 Msa1376560:five_prime_UTR
TCTCAAATGGGTTCAACACA+TGG 0.558500 tig0019825:+70154 Msa1376560:CDS
ATAATGATGTTTAAAATGGA+GGG 0.558653 tig0019825:+73173 Msa1376560:three_prime_UTR
TCAGGGGTGGAAGGAAGTTG+CGG 0.559046 tig0019825:-70122 None:intergenic
ATTTGCTCAATGGGCTACAA+TGG 0.559335 tig0019825:+71226 Msa1376560:CDS
GAAGAAATTAAGTTCTCTGA+AGG 0.563158 tig0019825:+70539 Msa1376560:CDS
GAAGACACTGCAAGAGATTG+GGG 0.566948 tig0019825:+72798 Msa1376560:CDS
GGCTGCTGCAAAGCTTGCAA+AGG 0.568821 tig0019825:+70049 Msa1376560:CDS
GAGAAGTATGATGCTTCTAA+GGG 0.570079 tig0019825:+71767 Msa1376560:CDS
CAACTGGGCTGTCGATGAAG+AGG 0.570194 tig0019825:+72449 Msa1376560:CDS
AAGTGATTCTACAGATGAGG+AGG 0.571659 tig0019825:-69967 None:intergenic
GTTGTTGATTATGTTGTGGG+GGG 0.573629 tig0019825:-70097 None:intergenic
AGATGAGATGAGATTAGATG+AGG 0.573865 tig0019825:-69479 None:intergenic
GGTTGTTGATTATGTTGTGG+GGG 0.579454 tig0019825:-70098 None:intergenic
AAGAGTCAGAGCTTCTGGGA+AGG 0.580062 tig0019825:+70379 Msa1376560:CDS
GATGCTGTATCCATTGCCAC+TGG 0.580093 tig0019825:+70188 Msa1376560:CDS
TGAGGAACTTGAAGATGTAG+AGG 0.581553 tig0019825:+70295 Msa1376560:CDS
ACTAGTATAGATGCAAGATC+CGG 0.582105 tig0019825:+70332 Msa1376560:CDS
TTTAATCCACCAATGAGCAT+AGG 0.584506 tig0019825:-71804 None:intergenic
GAAAGAGATGATGATGATGA+TGG 0.585942 tig0019825:-69718 None:intergenic
AATCACTTTCTGTTCAGTCA+AGG 0.588234 tig0019825:+71840 Msa1376560:CDS
GAGTCTGCAAGATCTGGTCC+AGG 0.588401 tig0019825:+71373 Msa1376560:CDS
GGTTACAGGAAGGATGCCGC+GGG 0.590724 tig0019825:+71729 Msa1376560:intron
CTTATCCGAATGGGAAGGGG+GGG 0.592421 tig0019825:+69511 Msa1376560:five_prime_UTR
AAGAAGTGATTCTACAGATG+AGG 0.593743 tig0019825:-69970 None:intergenic
TCTTATCCGAATGGGAAGGG+GGG 0.597773 tig0019825:+69510 Msa1376560:five_prime_UTR
GCCTGAGAGACATAGGGCCA+AGG 0.601892 tig0019825:-69933 None:intergenic
TTAACAGTTCCACATGGTGG+GGG 0.603234 tig0019825:+72345 Msa1376560:intron
AAGAAGTTGCCGAAGCAACT+GGG 0.609388 tig0019825:+72434 Msa1376560:CDS
TCTTCAAGTTCCTCAGAGGT+AGG 0.609680 tig0019825:-70287 None:intergenic
TCAGTTGCTAAGAATTATCA+GGG 0.610615 tig0019825:+71341 Msa1376560:CDS
AATCTGAAAACTCACCACCT+TGG 0.611811 tig0019825:+69916 Msa1376560:CDS
GAGTTTGCCTGAGAGACATA+GGG 0.611941 tig0019825:-69939 None:intergenic
GGGTTACAGGAAGGATGCCG+CGG 0.612454 tig0019825:+71728 Msa1376560:intron
TCTGGGTTGCAGATGAATTG+TGG 0.622138 tig0019825:-69677 None:intergenic
CAAGAGATTGGGGAAATGAT+GGG 0.622941 tig0019825:+72808 Msa1376560:CDS
GATTTGGTATGGATGATGGA+AGG 0.625281 tig0019825:+72773 Msa1376560:CDS
TCAATGGGCTACAATGGCAG+GGG 0.637790 tig0019825:+71232 Msa1376560:CDS
TGTTCGGAGAAAGGATAATG+TGG 0.639946 tig0019825:+69630 Msa1376560:exon
TCACATTAGCCCCAACCAAG+AGG 0.641102 tig0019825:+70241 Msa1376560:CDS
GAACAACAACTAGAACTACA+AGG 0.641229 tig0019825:+70501 Msa1376560:CDS
AAAGCGTGTTCGTACACAAG+AGG 0.653089 tig0019825:+70448 Msa1376560:CDS
AGGAAGGTAAAATTAGACAG+AGG 0.653464 tig0019825:+69400 Msa1376560:five_prime_UTR
GAATAATGAAGAAAATGTGG+AGG 0.655093 tig0019825:-72998 None:intergenic
GGGGTGGAAGGAAGTTGCGG+TGG 0.664288 tig0019825:-70119 None:intergenic
GGCAACTTACAAAGTGAAGG+AGG 0.666025 tig0019825:+72366 Msa1376560:CDS
TGAGAGACATAGGGCCAAGG+TGG 0.668285 tig0019825:-69930 None:intergenic
CTGCACCTCTTACAAGCCCG+CGG 0.671463 tig0019825:-71745 None:intergenic
TTTGGCTTAACAGTTCCACA+TGG 0.676694 tig0019825:+72339 Msa1376560:intron
TACATCTTCAAGTTCCTCAG+AGG 0.677856 tig0019825:-70291 None:intergenic
TGTCGACGAGCCTACCTCTG+AGG 0.690720 tig0019825:+70277 Msa1376560:CDS
GTAGCCCATTGAGCAAATGT+GGG 0.718383 tig0019825:-71221 None:intergenic
AGGTAAGGAATTGAGTGACG+AGG 0.724366 tig0019825:+69420 Msa1376560:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAGTTTTCAATTAAGA+AGG + tig0019825:69373-69392 Msa1376560:five_prime_UTR 15.0%
!!! AAAAAGTTTTCAATTAAGAA+GGG + tig0019825:69374-69393 Msa1376560:five_prime_UTR 15.0%
!! AAGATATAACGATAAATATT+GGG - tig0019825:70816-70835 None:intergenic 15.0%
!!! ATGACAAATTTTAAAACTAT+AGG + tig0019825:71486-71505 Msa1376560:intron 15.0%
!! TAGTTAGTTAGTTAATTGTT+CGG + tig0019825:69614-69633 Msa1376560:five_prime_UTR 20.0%
!!! ATTTGAGAAGTAAATTTTCA+GGG - tig0019825:70142-70161 None:intergenic 20.0%
!! TGAAAATTTACTTCTCAAAT+GGG + tig0019825:70142-70161 Msa1376560:CDS 20.0%
!! GAAGATATAACGATAAATAT+TGG - tig0019825:70817-70836 None:intergenic 20.0%
!! GAAAGAATATTAATAGTGAA+AGG + tig0019825:70954-70973 Msa1376560:intron 20.0%
!!! ATAATTCAAACGTTTTCTTA+GGG - tig0019825:71270-71289 None:intergenic 20.0%
!!! ATATAATTTGAAATATGCAC+TGG + tig0019825:71460-71479 Msa1376560:intron 20.0%
!!! TATAATTTGAAATATGCACT+GGG + tig0019825:71461-71480 Msa1376560:intron 20.0%
!!! AGACTTTTTTGCAATATTTT+TGG + tig0019825:72321-72340 Msa1376560:intron 20.0%
!!! TATTCATTTTTCTGATACAT+TGG + tig0019825:72609-72628 Msa1376560:intron 20.0%
!! ATAAAAAGAACAAAGATATC+AGG - tig0019825:72968-72987 None:intergenic 20.0%
!! TTATTCAAGAGAAAACAAAA+AGG + tig0019825:73015-73034 Msa1376560:three_prime_UTR 20.0%
!! AAAAAATAATGATGAACTCT+TGG - tig0019825:73092-73111 None:intergenic 20.0%
!!! ATCATTATTTTTTTTGTACG+TGG + tig0019825:73099-73118 Msa1376560:three_prime_UTR 20.0%
!!! ATTACTTTCTCCAATTTTTA+AGG - tig0019825:73146-73165 None:intergenic 20.0%
!! AGAGATAATGATGTTTAAAA+TGG + tig0019825:73169-73188 Msa1376560:three_prime_UTR 20.0%
!!! ATAATGATGTTTAAAATGGA+GGG + tig0019825:73173-73192 Msa1376560:three_prime_UTR 20.0%
! AAATGAAATTTGTACGGTAT+TGG + tig0019825:69340-69359 Msa1376560:five_prime_UTR 25.0%
! TCATTTCATTCATTCATTCA+AGG - tig0019825:69586-69605 None:intergenic 25.0%
!!! TGTCTTGTAATTGTTGTTTT+GGG - tig0019825:69834-69853 None:intergenic 25.0%
!! TATTTTGTCTTCTTCATCAA+CGG + tig0019825:69857-69876 Msa1376560:CDS 25.0%
!! TTTGAGAAGTAAATTTTCAG+GGG - tig0019825:70141-70160 None:intergenic 25.0%
!! CATTTGAGAAGTAAATTTTC+AGG - tig0019825:70143-70162 None:intergenic 25.0%
! CTGAAAATTTACTTCTCAAA+TGG + tig0019825:70141-70160 Msa1376560:CDS 25.0%
! TTCAGAGAACTTAATTTCTT+CGG - tig0019825:70540-70559 None:intergenic 25.0%
!!! AGACTTTTGTTATAAAACCT+AGG - tig0019825:70601-70620 None:intergenic 25.0%
!! AAAGCTTGTTTAGAACAATA+TGG + tig0019825:70735-70754 Msa1376560:intron 25.0%
! ATCAACTGAATTATCAATCT+AGG + tig0019825:71015-71034 Msa1376560:intron 25.0%
! TATGAGATCCTGAATTATAT+TGG - tig0019825:71153-71172 None:intergenic 25.0%
!! CATAATTCAAACGTTTTCTT+AGG - tig0019825:71271-71290 None:intergenic 25.0%
! CTAAGAAAACGTTTGAATTA+TGG + tig0019825:71269-71288 Msa1376560:CDS 25.0%
!! TTTCTAGCAAAATATTGTAC+AGG - tig0019825:71409-71428 None:intergenic 25.0%
!! CAATATTTTGCTAGAAAGTA+CGG + tig0019825:71412-71431 Msa1376560:intron 25.0%
! AACACATCTTAAATCAAAAG+AGG + tig0019825:71550-71569 Msa1376560:intron 25.0%
! ATAGTTAAATGGTTGATTAC+TGG - tig0019825:71700-71719 None:intergenic 25.0%
!!! ACCATTTAACTATTTTTCGT+TGG + tig0019825:71707-71726 Msa1376560:intron 25.0%
!!! CCATTTAACTATTTTTCGTT+GGG + tig0019825:71708-71727 Msa1376560:intron 25.0%
! AAGATAAAGATAATACTCAC+TGG - tig0019825:71878-71897 None:intergenic 25.0%
! AATGAAAATATTTCCATGCA+TGG - tig0019825:71918-71937 None:intergenic 25.0%
!! TTGGCAATTTTCAAATAAAC+AGG - tig0019825:71942-71961 None:intergenic 25.0%
! CACAAATTTGAACAAGATTA+GGG - tig0019825:72562-72581 None:intergenic 25.0%
! TCAGAAAAATGAATATCACA+TGG - tig0019825:72604-72623 None:intergenic 25.0%
! AGCTAACTTCAATATTTGAT+GGG - tig0019825:72935-72954 None:intergenic 25.0%
! AAGCTAACTTCAATATTTGA+TGG - tig0019825:72936-72955 None:intergenic 25.0%
!! TATTGAAGTTAGCTTATTAC+AGG + tig0019825:72941-72960 Msa1376560:three_prime_UTR 25.0%
! CTTGAATAATGAAGAAAATG+TGG - tig0019825:73004-73023 None:intergenic 25.0%
!!! AAGGTTATTTTCAGTATACT+AGG + tig0019825:73034-73053 Msa1376560:three_prime_UTR 25.0%
!!! ATTATTTTTTTTGTACGTGG+TGG + tig0019825:73102-73121 Msa1376560:three_prime_UTR 25.0%
!! GATAATGATGTTTAAAATGG+AGG + tig0019825:73172-73191 Msa1376560:three_prime_UTR 25.0%
! TTTTCAATTAAGAAGGGTGA+AGG + tig0019825:69380-69399 Msa1376560:five_prime_UTR 30.0%
TTAGTTAATTGTTCGGAGAA+AGG + tig0019825:69621-69640 Msa1376560:five_prime_UTR 30.0%
!!! GTGTCTTGTAATTGTTGTTT+TGG - tig0019825:69835-69854 None:intergenic 30.0%
! GAGCATCAAATTTGAAATCA+AGG - tig0019825:69887-69906 None:intergenic 30.0%
TGAAGATGTTCCATTATATC+TGG - tig0019825:70224-70243 None:intergenic 30.0%
GAAGAAATTAAGTTCTCTGA+AGG + tig0019825:70539-70558 Msa1376560:CDS 30.0%
!! TATAAAACCTAGGTTCTAAG+TGG - tig0019825:70591-70610 None:intergenic 30.0%
ATAACAAAAGTCTACTATCG+CGG + tig0019825:70608-70627 Msa1376560:intron 30.0%
CGATAAATATTGGGTGATTT+AGG - tig0019825:70807-70826 None:intergenic 30.0%
! TGTAACATTCTTTCCTTTTC+TGG - tig0019825:70909-70928 None:intergenic 30.0%
ATAACTGTTCATTTGATCAC+AGG + tig0019825:70932-70951 Msa1376560:intron 30.0%
ATCAGTTGCTAAGAATTATC+AGG + tig0019825:71340-71359 Msa1376560:CDS 30.0%
TCAGTTGCTAAGAATTATCA+GGG + tig0019825:71341-71360 Msa1376560:CDS 30.0%
TTTCAAATTATATCCGTGTG+TGG - tig0019825:71453-71472 None:intergenic 30.0%
CATGTTGAATATCACAAGAA+TGG - tig0019825:71640-71659 None:intergenic 30.0%
CATTCTTGTGATATTCAACA+TGG + tig0019825:71638-71657 Msa1376560:intron 30.0%
CCCAACGAAAAATAGTTAAA+TGG - tig0019825:71711-71730 None:intergenic 30.0%
! CTCTATGAGCTTCTATTTTA+CGG - tig0019825:71990-72009 None:intergenic 30.0%
!! ATGTTGGTTCAACAAAAACA+AGG + tig0019825:72054-72073 Msa1376560:intron 30.0%
TCGTTGAACAATCATCAATT+AGG + tig0019825:72130-72149 Msa1376560:intron 30.0%
ACTATCTATAAAGTGGTACA+CGG + tig0019825:72258-72277 Msa1376560:intron 30.0%
AAACAGTTGTACAGTGAAAA+TGG + tig0019825:72394-72413 Msa1376560:CDS 30.0%
GCACAAATTTGAACAAGATT+AGG - tig0019825:72563-72582 None:intergenic 30.0%
CATTAAGCAGTTCATGAAAA+AGG + tig0019825:72693-72712 Msa1376560:CDS 30.0%
! GATTAAATGGAGATTTGGTA+TGG + tig0019825:72762-72781 Msa1376560:CDS 30.0%
! AAATTGAGTCATGTGCTTTT+AGG + tig0019825:72854-72873 Msa1376560:CDS 30.0%
GAATAATGAAGAAAATGTGG+AGG - tig0019825:73001-73020 None:intergenic 30.0%
!!! CAATTTTTAAGGCTCTTTTC+TGG - tig0019825:73135-73154 None:intergenic 30.0%
CAGAAAAGAGCCTTAAAAAT+TGG + tig0019825:73133-73152 Msa1376560:three_prime_UTR 30.0%
AGGAAGGTAAAATTAGACAG+AGG + tig0019825:69400-69419 Msa1376560:five_prime_UTR 35.0%
GGTAAAATTAGACAGAGGTA+AGG + tig0019825:69405-69424 Msa1376560:five_prime_UTR 35.0%
AGATGAGATGAGATTAGATG+AGG - tig0019825:69482-69501 None:intergenic 35.0%
TTCCCATTCGGATAAGAAAA+GGG - tig0019825:69507-69526 None:intergenic 35.0%
! TTTTCTTATCCGAATGGGAA+GGG + tig0019825:69507-69526 Msa1376560:five_prime_UTR 35.0%
! GAAAGAGATGATGATGATGA+TGG - tig0019825:69721-69740 None:intergenic 35.0%
AAGAAGTGATTCTACAGATG+AGG - tig0019825:69973-69992 None:intergenic 35.0%
! TGGTTGTTGATTATGTTGTG+GGG - tig0019825:70102-70121 None:intergenic 35.0%
! GTGGTTGTTGATTATGTTGT+GGG - tig0019825:70103-70122 None:intergenic 35.0%
TTAAAGTCATCCTCTTGGTT+GGG - tig0019825:70254-70273 None:intergenic 35.0%
ATTAAAGTCATCCTCTTGGT+TGG - tig0019825:70255-70274 None:intergenic 35.0%
CATCATTAAAGTCATCCTCT+TGG - tig0019825:70259-70278 None:intergenic 35.0%
ACTAGTATAGATGCAAGATC+CGG + tig0019825:70332-70351 Msa1376560:CDS 35.0%
!!! TTCTGGCTTTTCTTTCTGTT+TGG - tig0019825:70361-70380 None:intergenic 35.0%
GTTGTTCTTAAGTAACGCAA+TGG - tig0019825:70488-70507 None:intergenic 35.0%
GAACAACAACTAGAACTACA+AGG + tig0019825:70501-70520 Msa1376560:CDS 35.0%
GAGAACTTAATTTCTTCGGA+TGG - tig0019825:70536-70555 None:intergenic 35.0%
! TAAGTTCTCTGAAGGAATAC+AGG + tig0019825:70547-70566 Msa1376560:CDS 35.0%
! ATCAAGAGCATATGAGAGAA+TGG - tig0019825:70772-70791 None:intergenic 35.0%
ATATATCTCAGTGCCAGAAA+AGG + tig0019825:70893-70912 Msa1376560:intron 35.0%
AATTATATTGGCAGGAGAAG+AGG - tig0019825:71141-71160 None:intergenic 35.0%
TTCTCCTGCCAATATAATTC+AGG + tig0019825:71142-71161 Msa1376560:intron 35.0%
AGATCCTGAATTATATTGGC+AGG - tig0019825:71149-71168 None:intergenic 35.0%
AAAGCTCGAAAAACTTCAAG+AGG + tig0019825:71172-71191 Msa1376560:CDS 35.0%
CTAAGAATTATCAGGGATCT+GGG + tig0019825:71348-71367 Msa1376560:CDS 35.0%
TGTACAGGTGAAAATATACC+TGG - tig0019825:71394-71413 None:intergenic 35.0%
! TAGAAAGTACGGACACTAAA+GGG + tig0019825:71423-71442 Msa1376560:intron 35.0%
TTAGTATGAGTCATTGCACT+TGG + tig0019825:71589-71608 Msa1376560:intron 35.0%
!! ACTATTTTTCGTTGGGTTAC+AGG + tig0019825:71715-71734 Msa1376560:intron 35.0%
! AGAGAAGTATGATGCTTCTA+AGG + tig0019825:71766-71785 Msa1376560:CDS 35.0%
! GAGAAGTATGATGCTTCTAA+GGG + tig0019825:71767-71786 Msa1376560:CDS 35.0%
TTTAATCCACCAATGAGCAT+AGG - tig0019825:71807-71826 None:intergenic 35.0%
AATCACTTTCTGTTCAGTCA+AGG + tig0019825:71840-71859 Msa1376560:CDS 35.0%
TATTTCTTTCTGACCATGCA+TGG + tig0019825:71902-71921 Msa1376560:intron 35.0%
! AGAAGTCATTGTTGGAGTTT+TGG - tig0019825:71961-71980 None:intergenic 35.0%
! TGAGCTTCTATTTTACGGAA+TGG - tig0019825:71985-72004 None:intergenic 35.0%
TTGTTGAACCAACATCAATC+AGG - tig0019825:72049-72068 None:intergenic 35.0%
ATGATTGTTCAACGAGAACA+GGG - tig0019825:72125-72144 None:intergenic 35.0%
ACCACTTTATAGATAGTCCA+CGG - tig0019825:72255-72274 None:intergenic 35.0%
!! ACTTTCTGTTCTAGAGATCT+GGG - tig0019825:72505-72524 None:intergenic 35.0%
!! AACTTTCTGTTCTAGAGATC+TGG - tig0019825:72506-72525 None:intergenic 35.0%
!! AGATCTCTAGAACAGAAAGT+TGG + tig0019825:72505-72524 Msa1376560:CDS 35.0%
!! GATCTCTAGAACAGAAAGTT+GGG + tig0019825:72506-72525 Msa1376560:CDS 35.0%
! AGACTGAAAGTTTAAGACTC+TGG - tig0019825:72537-72556 None:intergenic 35.0%
CTTGTTCAAATTTGTGCTTC+AGG + tig0019825:72566-72585 Msa1376560:intron 35.0%
! TTAATCACCTGTTTCTCTCT+AGG - tig0019825:72748-72767 None:intergenic 35.0%
GAGAGAAACAGGTGATTAAA+TGG + tig0019825:72749-72768 Msa1376560:CDS 35.0%
CAGGTGATTAAATGGAGATT+TGG + tig0019825:72757-72776 Msa1376560:CDS 35.0%
AAAATACTGCTGCAAATGCT+TGG - tig0019825:72902-72921 None:intergenic 35.0%
CAATTAAGAAGGGTGAAGGA+AGG + tig0019825:69384-69403 Msa1376560:five_prime_UTR 40.0%
! TCACCCTTTTCTTATCCGAA+TGG + tig0019825:69501-69520 Msa1376560:five_prime_UTR 40.0%
! CACCCTTTTCTTATCCGAAT+GGG + tig0019825:69502-69521 Msa1376560:five_prime_UTR 40.0%
CTTCCCATTCGGATAAGAAA+AGG - tig0019825:69508-69527 None:intergenic 40.0%
! CTTTTCTTATCCGAATGGGA+AGG + tig0019825:69506-69525 Msa1376560:five_prime_UTR 40.0%
TTTCTTATCCGAATGGGAAG+GGG + tig0019825:69508-69527 Msa1376560:five_prime_UTR 40.0%
TGTTCGGAGAAAGGATAATG+TGG + tig0019825:69630-69649 Msa1376560:exon 40.0%
!! AGAGATGATGATGATGATGG+CGG - tig0019825:69718-69737 None:intergenic 40.0%
AATCTGAAAACTCACCACCT+TGG + tig0019825:69916-69935 Msa1376560:CDS 40.0%
AAGTGATTCTACAGATGAGG+AGG - tig0019825:69970-69989 None:intergenic 40.0%
TGAAGCTCTTACTCTTGCTA+AGG + tig0019825:70028-70047 Msa1376560:CDS 40.0%
! GTTGTTGATTATGTTGTGGG+GGG - tig0019825:70100-70119 None:intergenic 40.0%
! GGTTGTTGATTATGTTGTGG+GGG - tig0019825:70101-70120 None:intergenic 40.0%
! GGTGGTTGTTGATTATGTTG+TGG - tig0019825:70104-70123 None:intergenic 40.0%
!! AGTAAATTTTCAGGGGTGGA+AGG - tig0019825:70134-70153 None:intergenic 40.0%
!! GAGAAGTAAATTTTCAGGGG+TGG - tig0019825:70138-70157 None:intergenic 40.0%
! TCTCAAATGGGTTCAACACA+TGG + tig0019825:70154-70173 Msa1376560:CDS 40.0%
TAAAGTCATCCTCTTGGTTG+GGG - tig0019825:70253-70272 None:intergenic 40.0%
! TACATCTTCAAGTTCCTCAG+AGG - tig0019825:70294-70313 None:intergenic 40.0%
TGAGGAACTTGAAGATGTAG+AGG + tig0019825:70295-70314 Msa1376560:CDS 40.0%
! TGGCTTTTCTTTCTGTTTGG+CGG - tig0019825:70358-70377 None:intergenic 40.0%
TGCATTACCACTTAGAACCT+AGG + tig0019825:70581-70600 Msa1376560:intron 40.0%
AAGAACTGCAGTCTCAATGT+TGG - tig0019825:70660-70679 None:intergenic 40.0%
TACCACAATCGTTAGTGTGA+CGG + tig0019825:70705-70724 Msa1376560:intron 40.0%
GGAGAAGAGGCAAATGAATT+AGG - tig0019825:71128-71147 None:intergenic 40.0%
!! ATTTGCTCAATGGGCTACAA+TGG + tig0019825:71226-71245 Msa1376560:CDS 40.0%
GCTAAGAATTATCAGGGATC+TGG + tig0019825:71347-71366 Msa1376560:CDS 40.0%
! CTAGAAAGTACGGACACTAA+AGG + tig0019825:71422-71441 Msa1376560:intron 40.0%
! AGAAAGTACGGACACTAAAG+GGG + tig0019825:71424-71443 Msa1376560:intron 40.0%
AAGAGTCCACACTTCTTCAA+TGG + tig0019825:71672-71691 Msa1376560:intron 40.0%
! TTTTTCGTTGGGTTACAGGA+AGG + tig0019825:71719-71738 Msa1376560:intron 40.0%
AGTTCTCAACCTATGCTCAT+TGG + tig0019825:71795-71814 Msa1376560:CDS 40.0%
!! TGCTCATTGGTGGATTAAAC+AGG + tig0019825:71808-71827 Msa1376560:CDS 40.0%
GACATTGACCTGATTGATGT+TGG + tig0019825:72038-72057 Msa1376560:intron 40.0%
TGATTGTTCAACGAGAACAG+GGG - tig0019825:72124-72143 None:intergenic 40.0%
GATGATTGTTCAACGAGAAC+AGG - tig0019825:72126-72145 None:intergenic 40.0%
ACAATCAACGAATGTTGACG+CGG - tig0019825:72205-72224 None:intergenic 40.0%
ATAAGTACACCAATTCACCG+TGG + tig0019825:72235-72254 Msa1376560:intron 40.0%
ATAGATAGTCCACGGTGAAT+TGG - tig0019825:72247-72266 None:intergenic 40.0%
! ACCGTGGACTATCTATAAAG+TGG + tig0019825:72251-72270 Msa1376560:intron 40.0%
! TTTGGCTTAACAGTTCCACA+TGG + tig0019825:72339-72358 Msa1376560:intron 40.0%
CTGCTTAATGAGCTGTTCTT+CGG - tig0019825:72683-72702 None:intergenic 40.0%
CATGAAAAAGGACCTGGAAA+AGG + tig0019825:72705-72724 Msa1376560:CDS 40.0%
! AAAGGACCTGGAAAAGGTAT+TGG + tig0019825:72711-72730 Msa1376560:CDS 40.0%
TCTCAATCCTAGAGAGAAAC+AGG + tig0019825:72738-72757 Msa1376560:CDS 40.0%
! TGGAGATTTGGTATGGATGA+TGG + tig0019825:72769-72788 Msa1376560:CDS 40.0%
!! GATTTGGTATGGATGATGGA+AGG + tig0019825:72773-72792 Msa1376560:CDS 40.0%
ATGAAGACACTGCAAGAGAT+TGG + tig0019825:72796-72815 Msa1376560:CDS 40.0%
TGAAGACACTGCAAGAGATT+GGG + tig0019825:72797-72816 Msa1376560:CDS 40.0%
CAAGAGATTGGGGAAATGAT+GGG + tig0019825:72808-72827 Msa1376560:CDS 40.0%
!! GGAAATGATGGGTGTAAGTA+GGG + tig0019825:72819-72838 Msa1376560:CDS 40.0%
AGGTAAGGAATTGAGTGACG+AGG + tig0019825:69420-69439 Msa1376560:five_prime_UTR 45.0%
TTCTTATCCGAATGGGAAGG+GGG + tig0019825:69509-69528 Msa1376560:five_prime_UTR 45.0%
CGCTTCTTCTCTTCTCTTCT+GGG - tig0019825:69558-69577 None:intergenic 45.0%
ACGCTTCTTCTCTTCTCTTC+TGG - tig0019825:69559-69578 None:intergenic 45.0%
TCTGGGTTGCAGATGAATTG+TGG - tig0019825:69680-69699 None:intergenic 45.0%
!! ATGATGATGATGATGGCGGT+GGG - tig0019825:69714-69733 None:intergenic 45.0%
! GAGTTTTCAGATTCAGCAGG+AGG - tig0019825:69909-69928 None:intergenic 45.0%
! GGTGAGTTTTCAGATTCAGC+AGG - tig0019825:69912-69931 None:intergenic 45.0%
GAGTTTGCCTGAGAGACATA+GGG - tig0019825:69942-69961 None:intergenic 45.0%
TGATTCTACAGATGAGGAGG+AGG - tig0019825:69967-69986 None:intergenic 45.0%
GGCAATGGATACAGCATCTT+CGG - tig0019825:70186-70205 None:intergenic 45.0%
ACCAGCAGGACCAGATATAA+TGG + tig0019825:70211-70230 Msa1376560:CDS 45.0%
TCCATTATATCTGGTCCTGC+TGG - tig0019825:70215-70234 None:intergenic 45.0%
! TCTTCAAGTTCCTCAGAGGT+AGG - tig0019825:70290-70309 None:intergenic 45.0%
! TTTTCTTTCTGTTTGGCGGC+CGG - tig0019825:70354-70373 None:intergenic 45.0%
CTTGAAGGAGACGATGTTTG+TGG - tig0019825:70408-70427 None:intergenic 45.0%
AACATCGTCTCCTTCAAGTC+TGG + tig0019825:70410-70429 Msa1376560:CDS 45.0%
!!! TGTACGAACACGCTTTTTCC+TGG - tig0019825:70444-70463 None:intergenic 45.0%
AAAGCGTGTTCGTACACAAG+AGG + tig0019825:70448-70467 Msa1376560:CDS 45.0%
GAGGACCTTGCAGAAAAATG+TGG + tig0019825:71191-71210 Msa1376560:CDS 45.0%
GACCTTGCAGAAAAATGTGG+CGG + tig0019825:71194-71213 Msa1376560:CDS 45.0%
GTAGCCCATTGAGCAAATGT+GGG - tig0019825:71224-71243 None:intergenic 45.0%
TGTAGCCCATTGAGCAAATG+TGG - tig0019825:71225-71244 None:intergenic 45.0%
! GAAAGTACGGACACTAAAGG+GGG + tig0019825:71425-71444 Msa1376560:intron 45.0%
CTGGAACCATTGAAGAAGTG+TGG - tig0019825:71681-71700 None:intergenic 45.0%
TCTCAACCTATGCTCATTGG+TGG + tig0019825:71798-71817 Msa1376560:CDS 45.0%
!! GGTGGATTAAACAGGCAGTT+CGG + tig0019825:71816-71835 Msa1376560:CDS 45.0%
GGAATGGCAGAAGTCATTGT+TGG - tig0019825:71969-71988 None:intergenic 45.0%
GATTGTTCAACGAGAACAGG+GGG - tig0019825:72123-72142 None:intergenic 45.0%
! AGGAGACCATGAGCTTCTTT+TGG + tig0019825:72176-72195 Msa1376560:intron 45.0%
! GGAGACCATGAGCTTCTTTT+GGG + tig0019825:72177-72196 Msa1376560:intron 45.0%
! GAGACCATGAGCTTCTTTTG+GGG + tig0019825:72178-72197 Msa1376560:intron 45.0%
! AGACCATGAGCTTCTTTTGG+GGG + tig0019825:72179-72198 Msa1376560:intron 45.0%
GCTTAACAGTTCCACATGGT+GGG + tig0019825:72343-72362 Msa1376560:intron 45.0%
CTTAACAGTTCCACATGGTG+GGG + tig0019825:72344-72363 Msa1376560:intron 45.0%
TTAACAGTTCCACATGGTGG+GGG + tig0019825:72345-72364 Msa1376560:intron 45.0%
GGCAACTTACAAAGTGAAGG+AGG + tig0019825:72366-72385 Msa1376560:CDS 45.0%
AAGAAGTTGCCGAAGCAACT+GGG + tig0019825:72434-72453 Msa1376560:CDS 45.0%
! TAGAGATCTGGGAGCTTTTG+GGG - tig0019825:72494-72513 None:intergenic 45.0%
! CTAGAGATCTGGGAGCTTTT+GGG - tig0019825:72495-72514 None:intergenic 45.0%
! TCTAGAGATCTGGGAGCTTT+TGG - tig0019825:72496-72515 None:intergenic 45.0%
GCAGTTCATGAAAAAGGACC+TGG + tig0019825:72699-72718 Msa1376560:CDS 45.0%
! GACTGTCCAATACCTTTTCC+AGG - tig0019825:72720-72739 None:intergenic 45.0%
GAAGACACTGCAAGAGATTG+GGG + tig0019825:72798-72817 Msa1376560:CDS 45.0%
GCAAGAGATTGGGGAAATGA+TGG + tig0019825:72807-72826 Msa1376560:CDS 45.0%
!! GGGAAATGATGGGTGTAAGT+AGG + tig0019825:72818-72837 Msa1376560:CDS 45.0%
TCTTATCCGAATGGGAAGGG+GGG + tig0019825:69510-69529 Msa1376560:five_prime_UTR 50.0%
!! GATGATGATGATGATGGCGG+TGG - tig0019825:69715-69734 None:intergenic 50.0%
GGAGTTTGCCTGAGAGACAT+AGG - tig0019825:69943-69962 None:intergenic 50.0%
TTCTACAGATGAGGAGGAGG+AGG - tig0019825:69964-69983 None:intergenic 50.0%
GATGCTGTATCCATTGCCAC+TGG + tig0019825:70188-70207 Msa1376560:CDS 50.0%
TCACATTAGCCCCAACCAAG+AGG + tig0019825:70241-70260 Msa1376560:CDS 50.0%
CCAGAAGAGTCAGAGCTTCT+GGG + tig0019825:70375-70394 Msa1376560:CDS 50.0%
! AAGAGTCAGAGCTTCTGGGA+AGG + tig0019825:70379-70398 Msa1376560:CDS 50.0%
!!! AACACGCTTTTTCCTGGTGG+TGG - tig0019825:70438-70457 None:intergenic 50.0%
!!! ACGAACACGCTTTTTCCTGG+TGG - tig0019825:70441-70460 None:intergenic 50.0%
AGTCTACTATCGCGGCATCA+TGG + tig0019825:70616-70635 Msa1376560:intron 50.0%
TGCCGTCACACTAACGATTG+TGG - tig0019825:70710-70729 None:intergenic 50.0%
CCAGCCCACATTTGCTCAAT+GGG + tig0019825:71217-71236 Msa1376560:CDS 50.0%
!! CTCAATGGGCTACAATGGCA+GGG + tig0019825:71231-71250 Msa1376560:CDS 50.0%
!! TCAATGGGCTACAATGGCAG+GGG + tig0019825:71232-71251 Msa1376560:CDS 50.0%
TGGGATGAGTCTGCAAGATC+TGG + tig0019825:71367-71386 Msa1376560:CDS 50.0%
AATGAGGATGAGGAGGACTG+CGG - tig0019825:72013-72032 None:intergenic 50.0%
TCCTCCTCATCCTCATTGGT+GGG + tig0019825:72016-72035 Msa1376560:intron 50.0%
ATGTCCCACCAATGAGGATG+AGG - tig0019825:72023-72042 None:intergenic 50.0%
AGGTCAATGTCCCACCAATG+AGG - tig0019825:72029-72048 None:intergenic 50.0%
GGCTTAACAGTTCCACATGG+TGG + tig0019825:72342-72361 Msa1376560:intron 50.0%
GGGGGCAACTTACAAAGTGA+AGG + tig0019825:72363-72382 Msa1376560:CDS 50.0%
TCGGCAACTTCTTCATCGTC+AGG - tig0019825:72427-72446 None:intergenic 50.0%
GAAGAAGTTGCCGAAGCAAC+TGG + tig0019825:72433-72452 Msa1376560:CDS 50.0%
!!! TGGGAGCTTTTGGGGTCAAA+AGG - tig0019825:72486-72505 None:intergenic 50.0%
ATTGGTGTGCGTTTCTGACC+AGG + tig0019825:72627-72646 Msa1376560:intron 50.0%
CAGGATCAGCAAGTACTTCC+TGG - tig0019825:72648-72667 None:intergenic 50.0%
! TCTTCGGCTGTTTCAGCTTC+AGG - tig0019825:72667-72686 None:intergenic 50.0%
CTTATCCGAATGGGAAGGGG+GGG + tig0019825:69511-69530 Msa1376560:five_prime_UTR 55.0%
AACATCCCCCCCTTCCCATT+CGG - tig0019825:69519-69538 None:intergenic 55.0%
GGTGGGTAGGGATTCTGTCT+GGG - tig0019825:69697-69716 None:intergenic 55.0%
!! GATGATGATGGCGGTGGGTA+GGG - tig0019825:69709-69728 None:intergenic 55.0%
!! TGATGATGATGGCGGTGGGT+AGG - tig0019825:69710-69729 None:intergenic 55.0%
TGAGAGACATAGGGCCAAGG+TGG - tig0019825:69933-69952 None:intergenic 55.0%
ACCTTGGCCCTATGTCTCTC+AGG + tig0019825:69932-69951 Msa1376560:CDS 55.0%
GGCTGCTGCAAAGCTTGCAA+AGG + tig0019825:70049-70068 Msa1376560:CDS 55.0%
TCAGGGGTGGAAGGAAGTTG+CGG - tig0019825:70125-70144 None:intergenic 55.0%
GCCAGAAGAGTCAGAGCTTC+TGG + tig0019825:70374-70393 Msa1376560:CDS 55.0%
! CCCAGAAGCTCTGACTCTTC+TGG - tig0019825:70378-70397 None:intergenic 55.0%
!! GGTGGTGGAACCAGACTTGA+AGG - tig0019825:70423-70442 None:intergenic 55.0%
! TCAAGTCTGGTTCCACCACC+AGG + tig0019825:70423-70442 Msa1376560:CDS 55.0%
! GGCCGCCACATTTTTCTGCA+AGG - tig0019825:71199-71218 None:intergenic 55.0%
GCCAGCCCACATTTGCTCAA+TGG + tig0019825:71216-71235 Msa1376560:CDS 55.0%
CCCATTGAGCAAATGTGGGC+TGG - tig0019825:71220-71239 None:intergenic 55.0%
!! GCTCAATGGGCTACAATGGC+AGG + tig0019825:71230-71249 Msa1376560:CDS 55.0%
GAGTCTGCAAGATCTGGTCC+AGG + tig0019825:71373-71392 Msa1376560:CDS 55.0%
!! ACTAAAGGGGGCACCACACA+CGG + tig0019825:71437-71456 Msa1376560:intron 55.0%
GCAGTCCTCCTCATCCTCAT+TGG + tig0019825:72012-72031 Msa1376560:intron 55.0%
GTCCTCCTCATCCTCATTGG+TGG + tig0019825:72015-72034 Msa1376560:intron 55.0%
TCCCACCAATGAGGATGAGG+AGG - tig0019825:72020-72039 None:intergenic 55.0%
AGGTCACCATCTCAGTCGTG+CGG + tig0019825:72150-72169 Msa1376560:intron 55.0%
TGTAAGTTGCCCCCACCATG+TGG - tig0019825:72357-72376 None:intergenic 55.0%
CATCGACAGCCCAGTTGCTT+CGG - tig0019825:72446-72465 None:intergenic 55.0%
CAACTGGGCTGTCGATGAAG+AGG + tig0019825:72449-72468 Msa1376560:CDS 55.0%
CGGTGGGTAGGGATTCTGTC+TGG - tig0019825:69698-69717 None:intergenic 60.0%
GCCTGAGAGACATAGGGCCA+AGG - tig0019825:69936-69955 None:intergenic 60.0%
TCCATTGCCACTGGACCAGC+AGG + tig0019825:70197-70216 Msa1376560:CDS 60.0%
TCCTGCTGGTCCAGTGGCAA+TGG - tig0019825:70201-70220 None:intergenic 60.0%
ATCTGGTCCTGCTGGTCCAG+TGG - tig0019825:70207-70226 None:intergenic 60.0%
TGTCGACGAGCCTACCTCTG+AGG + tig0019825:70277-70296 Msa1376560:CDS 60.0%
GGGTTACAGGAAGGATGCCG+CGG + tig0019825:71728-71747 Msa1376560:intron 60.0%
GGTTACAGGAAGGATGCCGC+GGG + tig0019825:71729-71748 Msa1376560:intron 60.0%
CTGCACCTCTTACAAGCCCG+CGG - tig0019825:71748-71767 None:intergenic 60.0%
CCTCATCCGCACGACTGAGA+TGG - tig0019825:72159-72178 None:intergenic 60.0%
CCATCTCAGTCGTGCGGATG+AGG + tig0019825:72156-72175 Msa1376560:intron 60.0%
CGGCCCCCAAAAGAAGCTCA+TGG - tig0019825:72185-72204 None:intergenic 60.0%
GGGGTGGAAGGAAGTTGCGG+TGG - tig0019825:70122-70141 None:intergenic 65.0%
GGATGCCGCGGGCTTGTAAG+AGG + tig0019825:71740-71759 Msa1376560:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0019825 gene 69337 73222 69337 ID=Msa1376560;Name=Msa1376560
tig0019825 mRNA 69337 73222 69337 ID=Msa1376560-mRNA-1;Parent=Msa1376560;Name=Msa1376560-mRNA-1;_AED=0.07;_eAED=0.07;_QI=310|1|1|1|1|1|6|292|565
tig0019825 exon 69337 69749 69337 ID=Msa1376560-mRNA-1:exon:5196;Parent=Msa1376560-mRNA-1
tig0019825 exon 69829 70568 69829 ID=Msa1376560-mRNA-1:exon:5197;Parent=Msa1376560-mRNA-1
tig0019825 exon 71164 71394 71164 ID=Msa1376560-mRNA-1:exon:5198;Parent=Msa1376560-mRNA-1
tig0019825 exon 71737 71877 71737 ID=Msa1376560-mRNA-1:exon:5199;Parent=Msa1376560-mRNA-1
tig0019825 exon 72352 72552 72352 ID=Msa1376560-mRNA-1:exon:5200;Parent=Msa1376560-mRNA-1
tig0019825 exon 72649 73222 72649 ID=Msa1376560-mRNA-1:exon:5201;Parent=Msa1376560-mRNA-1
tig0019825 five_prime_UTR 69337 69646 69337 ID=Msa1376560-mRNA-1:five_prime_utr;Parent=Msa1376560-mRNA-1
tig0019825 CDS 69647 69749 69647 ID=Msa1376560-mRNA-1:cds;Parent=Msa1376560-mRNA-1
tig0019825 CDS 69829 70568 69829 ID=Msa1376560-mRNA-1:cds;Parent=Msa1376560-mRNA-1
tig0019825 CDS 71164 71394 71164 ID=Msa1376560-mRNA-1:cds;Parent=Msa1376560-mRNA-1
tig0019825 CDS 71737 71877 71737 ID=Msa1376560-mRNA-1:cds;Parent=Msa1376560-mRNA-1
tig0019825 CDS 72352 72552 72352 ID=Msa1376560-mRNA-1:cds;Parent=Msa1376560-mRNA-1
tig0019825 CDS 72649 72930 72649 ID=Msa1376560-mRNA-1:cds;Parent=Msa1376560-mRNA-1
tig0019825 three_prime_UTR 72931 73222 72931 ID=Msa1376560-mRNA-1:three_prime_utr;Parent=Msa1376560-mRNA-1
Gene Sequence

>Msa1376560

ATGTGGTCATCGTCGTCGTCGTGTTTATTGCCACAATTCATCTGCAACCCAGACAGAATCCCTACCCACCGCCATCATCATCATCATCTCTTTCTTCTTCAATCACCCAAAACAACAATTACAAGACACTGTATTTTGTCTTCTTCATCAACGGCACTCCTTGATTTCAAATTTGATGCTCCTCCTGCTGAATCTGAAAACTCACCACCTTGGCCCTATGTCTCTCAGGCAAACTCCTCCTCCTCCTCATCTGTAGAATCACTTCTTACTAGTGAAGACGCTGTTATAGCTGCTGCTGCTTCTGAAGCTCTTACTCTTGCTAAGGCTGCTGCAAAGCTTGCAAAGGATGCTACTCTCTTATTCAATAACAACCCCCCACAACATAATCAACAACCACCGCAACTTCCTTCCACCCCTGAAAATTTACTTCTCAAATGGGTTCAACACATGGAAGCAGCCGAAGATGCTGTATCCATTGCCACTGGACCAGCAGGACCAGATATAATGGAACATCTTCACATTAGCCCCAACCAAGAGGATGACTTTAATGATGTCGACGAGCCTACCTCTGAGGAACTTGAAGATGTAGAGGAACAACTTTTCGATACTAGTATAGATGCAAGATCCGGCCGCCAAACAGAAAGAAAAGCCAGAAGAGTCAGAGCTTCTGGGAAGGCTGCCACAAACATCGTCTCCTTCAAGTCTGGTTCCACCACCAGGAAAAAGCGTGTTCGTACACAAGAGGTTGACTATTCTGATCCATTGCGTTACTTAAGAACAACAACTAGAACTACAAGGCTTCTCACTCCATCCGAAGAAATTAAGTTCTCTGAAGGAATACAGGATCTCATAAAGCTCGAAAAACTTCAAGAGGACCTTGCAGAAAAATGTGGCGGCCAGCCCACATTTGCTCAATGGGCTACAATGGCAGGGGTAGATCAAAAGACCCTAAGAAAACGTTTGAATTATGGTGTATTTTGCAAAGAAAAAATGATTAAAAGCAATATACGACTTGTCATATCAGTTGCTAAGAATTATCAGGGATCTGGGATGAGTCTGCAAGATCTGGTCCAGGAAGGATGCCGCGGGCTTGTAAGAGGTGCAGAGAAGTATGATGCTTCTAAGGGTTTTAAGTTCTCAACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTTTCTGTTCAGTCAAGGACTATTCGCTTGCCATTCCACATGGTGGGGGCAACTTACAAAGTGAAGGAGGCAAGAAAACAGTTGTACAGTGAAAATGGAAGACAACCTGACGATGAAGAAGTTGCCGAAGCAACTGGGCTGTCGATGAAGAGGCTTAGTGCTGTCCTTTTGACCCCAAAAGCTCCCAGATCTCTAGAACAGAAAGTTGGGATCAACCAGAGTCTTAAACTTTCAGAAGTACTTGCTGATCCTGAAGCTGAAACAGCCGAAGAACAGCTCATTAAGCAGTTCATGAAAAAGGACCTGGAAAAGGTATTGGACAGTCTCAATCCTAGAGAGAAACAGGTGATTAAATGGAGATTTGGTATGGATGATGGAAGGATGAAGACACTGCAAGAGATTGGGGAAATGATGGGTGTAAGTAGGGAGAGAATTAGACAAATTGAGTCATGTGCTTTTAGGAAGCTTAAAAATAAGAAGAGAGCCAAGCATTTGCAGCAGTATTTTGTTTCATAA

Protein sequence

>Msa1376560

MWSSSSSCLLPQFICNPDRIPTHRHHHHHLFLLQSPKTTITRHCILSSSSTALLDFKFDAPPAESENSPPWPYVSQANSSSSSSVESLLTSEDAVIAAAASEALTLAKAAAKLAKDATLLFNNNPPQHNQQPPQLPSTPENLLLKWVQHMEAAEDAVSIATGPAGPDIMEHLHISPNQEDDFNDVDEPTSEELEDVEEQLFDTSIDARSGRQTERKARRVRASGKAATNIVSFKSGSTTRKKRVRTQEVDYSDPLRYLRTTTRTTRLLTPSEEIKFSEGIQDLIKLEKLQEDLAEKCGGQPTFAQWATMAGVDQKTLRKRLNYGVFCKEKMIKSNIRLVISVAKNYQGSGMSLQDLVQEGCRGLVRGAEKYDASKGFKFSTYAHWWIKQAVRKSLSVQSRTIRLPFHMVGATYKVKEARKQLYSENGRQPDDEEVAEATGLSMKRLSAVLLTPKAPRSLEQKVGINQSLKLSEVLADPEAETAEEQLIKQFMKKDLEKVLDSLNPREKQVIKWRFGMDDGRMKTLQEIGEMMGVSRERIRQIESCAFRKLKNKKRAKHLQQYFVS*