AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1398840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398840 MtrunA17_Chr7g0271611 92.778 180 12 1 1 179 1 180 2.80e-115 328
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1398840 AT4G15510.2 61.453 179 57 5 10 177 40 217 4.93e-64 197
Msa1398840 AT4G15510.1 60.440 182 60 5 10 180 40 220 1.27e-63 198
Msa1398840 AT4G15510.4 71.533 137 36 2 46 180 3 138 3.70e-62 192
Msa1398840 AT4G15510.5 71.533 137 36 2 46 180 3 138 3.70e-62 192
Msa1398840 AT4G15510.3 71.533 137 36 2 46 180 3 138 3.70e-62 192

Find 77 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAACTATCCATCAAAT+TGG 0.259378 tig0022300:-7061 Msa1398840:CDS
GGCTTCGTTTCGAGCAAATA+AGG 0.293344 tig0022300:-6402 Msa1398840:three_prime_UTR
TGTACAAATGCAGCAAAGTT+TGG 0.296776 tig0022300:-6240 Msa1398840:three_prime_UTR
CTTACTTGAATCCAATTTGA+TGG 0.303876 tig0022300:+7050 None:intergenic
AGGAGGTACCTGTCTGTTCT+AGG 0.353510 tig0022300:-6512 Msa1398840:three_prime_UTR
GAATATGTTGATACATTTGA+TGG 0.354613 tig0022300:-7089 Msa1398840:CDS
ATGGATGGAATTTACCGAAT+TGG 0.356971 tig0022300:+7305 None:intergenic
ACAAGATAGGGTGGTGCGTT+TGG 0.360551 tig0022300:-6543 Msa1398840:three_prime_UTR
TGTTATGCTTATAACAAAAC+TGG 0.364964 tig0022300:+6165 None:intergenic
TTGCTGTTATGCCACAAGAT+AGG 0.370954 tig0022300:-6556 Msa1398840:three_prime_UTR
TGGATGGAATTTACCGAATT+GGG 0.381934 tig0022300:+7306 None:intergenic
CTCTGTTCTTGCAAAACTTA+CGG 0.388277 tig0022300:-6728 Msa1398840:CDS
CAAAACTGGTCAAGAATAGA+AGG 0.391626 tig0022300:+6179 None:intergenic
CGAATTGGGTGTGGGAGAAA+TGG 0.397956 tig0022300:+7320 None:intergenic
CTAGAATGTTGTAAATCAAA+AGG 0.409063 tig0022300:-6366 Msa1398840:three_prime_UTR
CATTTCTCCCACACCCAATT+CGG 0.411234 tig0022300:-7319 Msa1398840:intron
GCAAAACTTACGGTAATTTG+AGG 0.435568 tig0022300:-6718 Msa1398840:exon
GCCAGTACAATCACAACAAC+GGG 0.439743 tig0022300:-7393 Msa1398840:CDS
TATTCTTGATGAAAATATAT+CGG 0.441156 tig0022300:-6991 Msa1398840:CDS
TAGTGATACAGTATATCATT+TGG 0.443993 tig0022300:-7584 Msa1398840:five_prime_UTR
CAAAACTTACGGTAATTTGA+GGG 0.448813 tig0022300:-6717 Msa1398840:exon
TCAACTGCCGTTGTTAATGA+TGG 0.449571 tig0022300:-6289 Msa1398840:three_prime_UTR
TAGGGTGGTGCGTTTGGAAT+GGG 0.452062 tig0022300:-6537 Msa1398840:three_prime_UTR
ATTCAAGACTGTTCAAGACT+TGG 0.455381 tig0022300:-6940 Msa1398840:CDS
GGAATTTACCGAATTGGGTG+TGG 0.465108 tig0022300:+7311 None:intergenic
TTGGGTTCGCCTCAACAAGC+TGG 0.465683 tig0022300:-6921 Msa1398840:CDS
GAATTCACATGATGCTAATA+CGG 0.467654 tig0022300:+6045 None:intergenic
TCAAATTGGATTCAAGTAAG+AGG 0.471228 tig0022300:-7047 Msa1398840:CDS
ACTTACATTCTCTCCGACAT+TGG 0.478283 tig0022300:-7146 Msa1398840:CDS
TTCAAGACTGTTCAAGACTT+GGG 0.478605 tig0022300:-6939 Msa1398840:CDS
TGGGAGAAATGGAGCAGCGA+GGG 0.485253 tig0022300:+7331 None:intergenic
CATATGATCTTTGACCCACT+TGG 0.485479 tig0022300:-6013 Msa1398840:three_prime_UTR
TGCTGTTATGCCACAAGATA+GGG 0.492092 tig0022300:-6555 Msa1398840:three_prime_UTR
GTGAAATGGTGACATGGGTC+GGG 0.494548 tig0022300:+7362 None:intergenic
ACTCACACAGCAAAAGCAAA+TGG 0.499462 tig0022300:+7429 None:intergenic
CGAGGGGAATGAAAGTGAAA+TGG 0.506248 tig0022300:+7348 None:intergenic
GAGTTTATGTCCACTAGGCT+TGG 0.508538 tig0022300:-6870 Msa1398840:CDS
GGTCAAAGATCATATGAATA+CGG 0.509948 tig0022300:+6020 None:intergenic
TGGATTCAAGTAAGAGGTGC+TGG 0.510176 tig0022300:-7041 Msa1398840:CDS
AGAAAATGTGTTTCAAGAAG+AGG 0.524955 tig0022300:-6447 Msa1398840:three_prime_UTR
TAGAATGTTGTAAATCAAAA+GGG 0.529208 tig0022300:-6365 Msa1398840:three_prime_UTR
TCTGAGAGAGTTGCTGATGA+TGG 0.533806 tig0022300:-6816 Msa1398840:CDS
ATAGGGTGGTGCGTTTGGAA+TGG 0.545277 tig0022300:-6538 Msa1398840:three_prime_UTR
TGGGTTCGCCTCAACAAGCT+GGG 0.554823 tig0022300:-6920 Msa1398840:CDS
TGGTGCGTTTGGAATGGGAT+AGG 0.554855 tig0022300:-6532 Msa1398840:three_prime_UTR
TTACTGAGTTTATGTCCACT+AGG 0.557448 tig0022300:-6875 Msa1398840:CDS
GTCTTGAATTTCGAAGAAGA+AGG 0.559580 tig0022300:+6954 None:intergenic
GTAATCTCAACTCATACAGT+TGG 0.560478 tig0022300:+6477 None:intergenic
ACTTTCTTCCCAGCTTGTTG+AGG 0.564235 tig0022300:+6912 None:intergenic
ACCCGTTGTTGTGATTGTAC+TGG 0.564552 tig0022300:+7392 None:intergenic
ATCAGCAACTCTCTCAGAGG+TGG 0.572411 tig0022300:+6821 None:intergenic
ATCGCATTGTGGTGTGCGAT+TGG 0.573753 tig0022300:-7492 Msa1398840:five_prime_UTR
GAATTTACCGAATTGGGTGT+GGG 0.577884 tig0022300:+7312 None:intergenic
TTTCAACTCCTAGAACAGAC+AGG 0.577991 tig0022300:+6504 None:intergenic
TGTGTGAGTCGCATCGGCAA+TGG 0.582093 tig0022300:-7415 Msa1398840:exon
GAGTGAACTTCGTCAAGTCA+TGG 0.596736 tig0022300:-6423 Msa1398840:three_prime_UTR
ACGTTTAACACCAAGCCTAG+TGG 0.600812 tig0022300:+6860 None:intergenic
CAAATTGTACTATCAAGTTG+AGG 0.601868 tig0022300:-6793 Msa1398840:CDS
TCGATTGTTCGGACTCCAAG+TGG 0.603948 tig0022300:+5998 None:intergenic
TGCTAATGCTGTACCAATGT+CGG 0.609859 tig0022300:+7133 None:intergenic
AGTGAAATGGTGACATGGGT+CGG 0.610100 tig0022300:+7361 None:intergenic
CTTGCAAGATTAATATGCGA+TGG 0.617092 tig0022300:-6141 Msa1398840:three_prime_UTR
GTGGGAGAAATGGAGCAGCG+AGG 0.622596 tig0022300:+7330 None:intergenic
TGCGTTTGGAATGGGATAGG+AGG 0.627210 tig0022300:-6529 Msa1398840:three_prime_UTR
CAGCAAAGTTTGGATTGAGA+TGG 0.629144 tig0022300:-6230 Msa1398840:three_prime_UTR
ATGAAAGTGAAATGGTGACA+TGG 0.635725 tig0022300:+7356 None:intergenic
GGCCAGTACAATCACAACAA+CGG 0.639092 tig0022300:-7394 Msa1398840:CDS
AAAACTTACGGTAATTTGAG+GGG 0.642857 tig0022300:-6716 Msa1398840:exon
AAACGCACCACCCTATCTTG+TGG 0.644066 tig0022300:+6545 None:intergenic
CGATTGTTCGGACTCCAAGT+GGG 0.656545 tig0022300:+5999 None:intergenic
TGAAAGTGAAATGGTGACAT+GGG 0.668816 tig0022300:+7357 None:intergenic
GGGAGAAATGGAGCAGCGAG+GGG 0.672235 tig0022300:+7332 None:intergenic
ATCATCAGCAACTCTCTCAG+AGG 0.672975 tig0022300:+6818 None:intergenic
ACTGCTACCATCATTAACAA+CGG 0.699682 tig0022300:+6282 None:intergenic
TGTTATGCCACAAGATAGGG+TGG 0.714139 tig0022300:-6552 Msa1398840:three_prime_UTR
ACATATTCACGAAACACACG+AGG 0.719885 tig0022300:+7104 None:intergenic
AGATGGAAAGAATCGCATTG+TGG 0.729191 tig0022300:-7503 Msa1398840:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAATAAATATAAAA+AGG - tig0022300:6052-6071 Msa1398840:three_prime_UTR 0.0%
!!! TTTTAAAATAAATATAAAAA+GGG - tig0022300:6053-6072 Msa1398840:three_prime_UTR 0.0%
!!! TTTTTAAAATAAATATAAAA+AGG - tig0022300:6052-6071 Msa1398840:three_prime_UTR 0.0%
!!! TTTTAAAATAAATATAAAAA+GGG - tig0022300:6053-6072 Msa1398840:three_prime_UTR 0.0%
!!! ATATTTTCATCAAGAATATA+AGG + tig0022300:6619-6638 None:intergenic 15.0%
!! TATTCTTGATGAAAATATAT+CGG - tig0022300:6621-6640 Msa1398840:intron 15.0%
!!! ATATTTTCATCAAGAATATA+AGG + tig0022300:6619-6638 None:intergenic 15.0%
!! TATTCTTGATGAAAATATAT+CGG - tig0022300:6621-6640 Msa1398840:intron 15.0%
!! ACGTAATTTAGAAAGAAAAA+AGG - tig0022300:6082-6101 Msa1398840:three_prime_UTR 20.0%
!! AAATAAAATAATTGTGACAG+AGG + tig0022300:6347-6366 None:intergenic 20.0%
!! TACATTTATCAGAAAAATTG+TGG - tig0022300:6848-6867 Msa1398840:CDS 20.0%
!! TAGAATGTTGTAAATCAAAA+GGG - tig0022300:7247-7266 Msa1398840:intron 20.0%
!! ACGTAATTTAGAAAGAAAAA+AGG - tig0022300:6082-6101 Msa1398840:three_prime_UTR 20.0%
!! AAATAAAATAATTGTGACAG+AGG + tig0022300:6347-6366 None:intergenic 20.0%
!! TACATTTATCAGAAAAATTG+TGG - tig0022300:6848-6867 Msa1398840:CDS 20.0%
!! TAGAATGTTGTAAATCAAAA+GGG - tig0022300:7247-7266 Msa1398840:intron 20.0%
! TAGTGATACAGTATATCATT+TGG - tig0022300:6028-6047 Msa1398840:three_prime_UTR 25.0%
! GAATATGTTGATACATTTGA+TGG - tig0022300:6523-6542 Msa1398840:three_prime_UTR 25.0%
! CTAGAATGTTGTAAATCAAA+AGG - tig0022300:7246-7265 Msa1398840:intron 25.0%
! TGTTATGCTTATAACAAAAC+TGG + tig0022300:7450-7469 None:intergenic 25.0%
! TAGTGATACAGTATATCATT+TGG - tig0022300:6028-6047 Msa1398840:three_prime_UTR 25.0%
! GAATATGTTGATACATTTGA+TGG - tig0022300:6523-6542 Msa1398840:three_prime_UTR 25.0%
! CTAGAATGTTGTAAATCAAA+AGG - tig0022300:7246-7265 Msa1398840:intron 25.0%
! TGTTATGCTTATAACAAAAC+TGG + tig0022300:7450-7469 None:intergenic 25.0%
GAAAGAAAAAAGGATTGAGA+TGG - tig0022300:6092-6111 Msa1398840:three_prime_UTR 30.0%
!! AATGACATTGCTTTTCTTCT+AGG + tig0022300:6436-6455 None:intergenic 30.0%
CATTCAACTATCCATCAAAT+TGG - tig0022300:6551-6570 Msa1398840:three_prime_UTR 30.0%
CTTACTTGAATCCAATTTGA+TGG + tig0022300:6565-6584 None:intergenic 30.0%
TCAAATTGGATTCAAGTAAG+AGG - tig0022300:6565-6584 Msa1398840:three_prime_UTR 30.0%
! CAAATTGTACTATCAAGTTG+AGG - tig0022300:6819-6838 Msa1398840:CDS 30.0%
CAAAACTTACGGTAATTTGA+GGG - tig0022300:6895-6914 Msa1398840:CDS 30.0%
AAAACTTACGGTAATTTGAG+GGG - tig0022300:6896-6915 Msa1398840:CDS 30.0%
! TCTTCTTGAAACACATTTTC+TGG + tig0022300:7166-7185 None:intergenic 30.0%
AGAAAATGTGTTTCAAGAAG+AGG - tig0022300:7165-7184 Msa1398840:CDS 30.0%
GAATTCACATGATGCTAATA+CGG + tig0022300:7570-7589 None:intergenic 30.0%
GGTCAAAGATCATATGAATA+CGG + tig0022300:7595-7614 None:intergenic 30.0%
AAAAGAGAAGAGACCTAATT+CGG + tig0022300:6007-6026 None:intergenic 30.0%
GAAAGAAAAAAGGATTGAGA+TGG - tig0022300:6092-6111 Msa1398840:three_prime_UTR 30.0%
!! AATGACATTGCTTTTCTTCT+AGG + tig0022300:6436-6455 None:intergenic 30.0%
CATTCAACTATCCATCAAAT+TGG - tig0022300:6551-6570 Msa1398840:three_prime_UTR 30.0%
CTTACTTGAATCCAATTTGA+TGG + tig0022300:6565-6584 None:intergenic 30.0%
TCAAATTGGATTCAAGTAAG+AGG - tig0022300:6565-6584 Msa1398840:three_prime_UTR 30.0%
! CAAATTGTACTATCAAGTTG+AGG - tig0022300:6819-6838 Msa1398840:CDS 30.0%
CAAAACTTACGGTAATTTGA+GGG - tig0022300:6895-6914 Msa1398840:CDS 30.0%
AAAACTTACGGTAATTTGAG+GGG - tig0022300:6896-6915 Msa1398840:CDS 30.0%
! TCTTCTTGAAACACATTTTC+TGG + tig0022300:7166-7185 None:intergenic 30.0%
AGAAAATGTGTTTCAAGAAG+AGG - tig0022300:7165-7184 Msa1398840:CDS 30.0%
GAATTCACATGATGCTAATA+CGG + tig0022300:7570-7589 None:intergenic 30.0%
GGTCAAAGATCATATGAATA+CGG + tig0022300:7595-7614 None:intergenic 30.0%
TGAAAGTGAAATGGTGACAT+GGG + tig0022300:6258-6277 None:intergenic 35.0%
ATGAAAGTGAAATGGTGACA+TGG + tig0022300:6259-6278 None:intergenic 35.0%
TGGATGGAATTTACCGAATT+GGG + tig0022300:6309-6328 None:intergenic 35.0%
ATGGATGGAATTTACCGAAT+TGG + tig0022300:6310-6329 None:intergenic 35.0%
!!! TGGTGCTGATATTTTCTTCA+GGG - tig0022300:6591-6610 Msa1398840:three_prime_UTR 35.0%
GTCTTGAATTTCGAAGAAGA+AGG + tig0022300:6661-6680 None:intergenic 35.0%
ATTCAAGACTGTTCAAGACT+TGG - tig0022300:6672-6691 Msa1398840:intron 35.0%
TTCAAGACTGTTCAAGACTT+GGG - tig0022300:6673-6692 Msa1398840:intron 35.0%
TTACTGAGTTTATGTCCACT+AGG - tig0022300:6737-6756 Msa1398840:CDS 35.0%
CTCTGTTCTTGCAAAACTTA+CGG - tig0022300:6884-6903 Msa1398840:CDS 35.0%
GCAAAACTTACGGTAATTTG+AGG - tig0022300:6894-6913 Msa1398840:CDS 35.0%
!!! TTTGAGGGGTGTCTTTTATA+TGG - tig0022300:6910-6929 Msa1398840:CDS 35.0%
! GGGTGTCTTTTATATGGTAA+TGG - tig0022300:6916-6935 Msa1398840:CDS 35.0%
GTAATCTCAACTCATACAGT+TGG + tig0022300:7138-7157 None:intergenic 35.0%
ACTGCTACCATCATTAACAA+CGG + tig0022300:7333-7352 None:intergenic 35.0%
TGTACAAATGCAGCAAAGTT+TGG - tig0022300:7372-7391 Msa1398840:CDS 35.0%
CAAAACTGGTCAAGAATAGA+AGG + tig0022300:7436-7455 None:intergenic 35.0%
CTTGCAAGATTAATATGCGA+TGG - tig0022300:7471-7490 Msa1398840:five_prime_UTR 35.0%
TGAAAGTGAAATGGTGACAT+GGG + tig0022300:6258-6277 None:intergenic 35.0%
ATGAAAGTGAAATGGTGACA+TGG + tig0022300:6259-6278 None:intergenic 35.0%
TGGATGGAATTTACCGAATT+GGG + tig0022300:6309-6328 None:intergenic 35.0%
ATGGATGGAATTTACCGAAT+TGG + tig0022300:6310-6329 None:intergenic 35.0%
!!! TGGTGCTGATATTTTCTTCA+GGG - tig0022300:6591-6610 Msa1398840:three_prime_UTR 35.0%
GTCTTGAATTTCGAAGAAGA+AGG + tig0022300:6661-6680 None:intergenic 35.0%
ATTCAAGACTGTTCAAGACT+TGG - tig0022300:6672-6691 Msa1398840:intron 35.0%
TTCAAGACTGTTCAAGACTT+GGG - tig0022300:6673-6692 Msa1398840:intron 35.0%
TTACTGAGTTTATGTCCACT+AGG - tig0022300:6737-6756 Msa1398840:CDS 35.0%
CTCTGTTCTTGCAAAACTTA+CGG - tig0022300:6884-6903 Msa1398840:CDS 35.0%
GCAAAACTTACGGTAATTTG+AGG - tig0022300:6894-6913 Msa1398840:CDS 35.0%
!!! TTTGAGGGGTGTCTTTTATA+TGG - tig0022300:6910-6929 Msa1398840:CDS 35.0%
! GGGTGTCTTTTATATGGTAA+TGG - tig0022300:6916-6935 Msa1398840:CDS 35.0%
GTAATCTCAACTCATACAGT+TGG + tig0022300:7138-7157 None:intergenic 35.0%
ACTGCTACCATCATTAACAA+CGG + tig0022300:7333-7352 None:intergenic 35.0%
TGTACAAATGCAGCAAAGTT+TGG - tig0022300:7372-7391 Msa1398840:CDS 35.0%
CAAAACTGGTCAAGAATAGA+AGG + tig0022300:7436-7455 None:intergenic 35.0%
CTTGCAAGATTAATATGCGA+TGG - tig0022300:7471-7490 Msa1398840:five_prime_UTR 35.0%
AGATGGAAAGAATCGCATTG+TGG - tig0022300:6109-6128 Msa1398840:three_prime_UTR 40.0%
ACTCACACAGCAAAAGCAAA+TGG + tig0022300:6186-6205 None:intergenic 40.0%
GAATTTACCGAATTGGGTGT+GGG + tig0022300:6303-6322 None:intergenic 40.0%
GAGAAAGCTCATGAAATGGA+TGG + tig0022300:6325-6344 None:intergenic 40.0%
AGAGGAGAAAGCTCATGAAA+TGG + tig0022300:6329-6348 None:intergenic 40.0%
ACTTACATTCTCTCCGACAT+TGG - tig0022300:6466-6485 Msa1398840:three_prime_UTR 40.0%
TGCTAATGCTGTACCAATGT+CGG + tig0022300:6482-6501 None:intergenic 40.0%
ACATATTCACGAAACACACG+AGG + tig0022300:6511-6530 None:intergenic 40.0%
!!! CTGGTGCTGATATTTTCTTC+AGG - tig0022300:6590-6609 Msa1398840:three_prime_UTR 40.0%
!! TGTGTGTTGTTTGTGTTGCT+AGG - tig0022300:7000-7019 Msa1398840:CDS 40.0%
! TTGCTGTTATGCCACAAGAT+AGG - tig0022300:7056-7075 Msa1398840:CDS 40.0%
TGCTGTTATGCCACAAGATA+GGG - tig0022300:7057-7076 Msa1398840:CDS 40.0%
TTTCAACTCCTAGAACAGAC+AGG + tig0022300:7111-7130 None:intergenic 40.0%
TCAACTGCCGTTGTTAATGA+TGG - tig0022300:7323-7342 Msa1398840:CDS 40.0%
CAGCAAAGTTTGGATTGAGA+TGG - tig0022300:7382-7401 Msa1398840:CDS 40.0%
CATATGATCTTTGACCCACT+TGG - tig0022300:7599-7618 Msa1398840:five_prime_UTR 40.0%
AGATGGAAAGAATCGCATTG+TGG - tig0022300:6109-6128 Msa1398840:three_prime_UTR 40.0%
ACTCACACAGCAAAAGCAAA+TGG + tig0022300:6186-6205 None:intergenic 40.0%
GAATTTACCGAATTGGGTGT+GGG + tig0022300:6303-6322 None:intergenic 40.0%
GAGAAAGCTCATGAAATGGA+TGG + tig0022300:6325-6344 None:intergenic 40.0%
AGAGGAGAAAGCTCATGAAA+TGG + tig0022300:6329-6348 None:intergenic 40.0%
ACTTACATTCTCTCCGACAT+TGG - tig0022300:6466-6485 Msa1398840:three_prime_UTR 40.0%
TGCTAATGCTGTACCAATGT+CGG + tig0022300:6482-6501 None:intergenic 40.0%
ACATATTCACGAAACACACG+AGG + tig0022300:6511-6530 None:intergenic 40.0%
!!! CTGGTGCTGATATTTTCTTC+AGG - tig0022300:6590-6609 Msa1398840:three_prime_UTR 40.0%
!! TGTGTGTTGTTTGTGTTGCT+AGG - tig0022300:7000-7019 Msa1398840:CDS 40.0%
! TTGCTGTTATGCCACAAGAT+AGG - tig0022300:7056-7075 Msa1398840:CDS 40.0%
TGCTGTTATGCCACAAGATA+GGG - tig0022300:7057-7076 Msa1398840:CDS 40.0%
TTTCAACTCCTAGAACAGAC+AGG + tig0022300:7111-7130 None:intergenic 40.0%
TCAACTGCCGTTGTTAATGA+TGG - tig0022300:7323-7342 Msa1398840:CDS 40.0%
CAGCAAAGTTTGGATTGAGA+TGG - tig0022300:7382-7401 Msa1398840:CDS 40.0%
CATATGATCTTTGACCCACT+TGG - tig0022300:7599-7618 Msa1398840:five_prime_UTR 40.0%
!! TTTTGCTGTGTGAGTCGCAT+CGG - tig0022300:6191-6210 Msa1398840:three_prime_UTR 45.0%
GGCCAGTACAATCACAACAA+CGG - tig0022300:6218-6237 Msa1398840:three_prime_UTR 45.0%
GCCAGTACAATCACAACAAC+GGG - tig0022300:6219-6238 Msa1398840:three_prime_UTR 45.0%
ACCCGTTGTTGTGATTGTAC+TGG + tig0022300:6223-6242 None:intergenic 45.0%
AGTGAAATGGTGACATGGGT+CGG + tig0022300:6254-6273 None:intergenic 45.0%
CGAGGGGAATGAAAGTGAAA+TGG + tig0022300:6267-6286 None:intergenic 45.0%
CATTTCTCCCACACCCAATT+CGG - tig0022300:6293-6312 Msa1398840:three_prime_UTR 45.0%
GGAATTTACCGAATTGGGTG+TGG + tig0022300:6304-6323 None:intergenic 45.0%
! TGGATTCAAGTAAGAGGTGC+TGG - tig0022300:6571-6590 Msa1398840:three_prime_UTR 45.0%
!! ACTTTCTTCCCAGCTTGTTG+AGG + tig0022300:6703-6722 None:intergenic 45.0%
GAGTTTATGTCCACTAGGCT+TGG - tig0022300:6742-6761 Msa1398840:CDS 45.0%
ACGTTTAACACCAAGCCTAG+TGG + tig0022300:6755-6774 None:intergenic 45.0%
ATCATCAGCAACTCTCTCAG+AGG + tig0022300:6797-6816 None:intergenic 45.0%
TCTGAGAGAGTTGCTGATGA+TGG - tig0022300:6796-6815 Msa1398840:CDS 45.0%
TGTTATGCCACAAGATAGGG+TGG - tig0022300:7060-7079 Msa1398840:CDS 45.0%
GAGTGAACTTCGTCAAGTCA+TGG - tig0022300:7189-7208 Msa1398840:CDS 45.0%
GGCTTCGTTTCGAGCAAATA+AGG - tig0022300:7210-7229 Msa1398840:intron 45.0%
!! TTTTGCTGTGTGAGTCGCAT+CGG - tig0022300:6191-6210 Msa1398840:three_prime_UTR 45.0%
GGCCAGTACAATCACAACAA+CGG - tig0022300:6218-6237 Msa1398840:three_prime_UTR 45.0%
GCCAGTACAATCACAACAAC+GGG - tig0022300:6219-6238 Msa1398840:three_prime_UTR 45.0%
ACCCGTTGTTGTGATTGTAC+TGG + tig0022300:6223-6242 None:intergenic 45.0%
AGTGAAATGGTGACATGGGT+CGG + tig0022300:6254-6273 None:intergenic 45.0%
CGAGGGGAATGAAAGTGAAA+TGG + tig0022300:6267-6286 None:intergenic 45.0%
CATTTCTCCCACACCCAATT+CGG - tig0022300:6293-6312 Msa1398840:three_prime_UTR 45.0%
GGAATTTACCGAATTGGGTG+TGG + tig0022300:6304-6323 None:intergenic 45.0%
! TGGATTCAAGTAAGAGGTGC+TGG - tig0022300:6571-6590 Msa1398840:three_prime_UTR 45.0%
!! ACTTTCTTCCCAGCTTGTTG+AGG + tig0022300:6703-6722 None:intergenic 45.0%
GAGTTTATGTCCACTAGGCT+TGG - tig0022300:6742-6761 Msa1398840:CDS 45.0%
ACGTTTAACACCAAGCCTAG+TGG + tig0022300:6755-6774 None:intergenic 45.0%
ATCATCAGCAACTCTCTCAG+AGG + tig0022300:6797-6816 None:intergenic 45.0%
TCTGAGAGAGTTGCTGATGA+TGG - tig0022300:6796-6815 Msa1398840:CDS 45.0%
TGTTATGCCACAAGATAGGG+TGG - tig0022300:7060-7079 Msa1398840:CDS 45.0%
GAGTGAACTTCGTCAAGTCA+TGG - tig0022300:7189-7208 Msa1398840:CDS 45.0%
GGCTTCGTTTCGAGCAAATA+AGG - tig0022300:7210-7229 Msa1398840:intron 45.0%
!!! TTTAAAATAAATATAAAAAG+GGG - tig0022300:6054-6073 Msa1398840:three_prime_UTR 5.0%
!!! TTTAAAATAAATATAAAAAG+GGG - tig0022300:6054-6073 Msa1398840:three_prime_UTR 5.0%
ATCGCATTGTGGTGTGCGAT+TGG - tig0022300:6120-6139 Msa1398840:three_prime_UTR 50.0%
GTGAAATGGTGACATGGGTC+GGG + tig0022300:6253-6272 None:intergenic 50.0%
CGAATTGGGTGTGGGAGAAA+TGG + tig0022300:6295-6314 None:intergenic 50.0%
ATCAGCAACTCTCTCAGAGG+TGG + tig0022300:6794-6813 None:intergenic 50.0%
AAACGCACCACCCTATCTTG+TGG + tig0022300:7070-7089 None:intergenic 50.0%
ACAAGATAGGGTGGTGCGTT+TGG - tig0022300:7069-7088 Msa1398840:CDS 50.0%
ATAGGGTGGTGCGTTTGGAA+TGG - tig0022300:7074-7093 Msa1398840:CDS 50.0%
! TAGGGTGGTGCGTTTGGAAT+GGG - tig0022300:7075-7094 Msa1398840:CDS 50.0%
! TGGTGCGTTTGGAATGGGAT+AGG - tig0022300:7080-7099 Msa1398840:CDS 50.0%
! TGCGTTTGGAATGGGATAGG+AGG - tig0022300:7083-7102 Msa1398840:CDS 50.0%
!! AGGAGGTACCTGTCTGTTCT+AGG - tig0022300:7100-7119 Msa1398840:CDS 50.0%
ATCGCATTGTGGTGTGCGAT+TGG - tig0022300:6120-6139 Msa1398840:three_prime_UTR 50.0%
GTGAAATGGTGACATGGGTC+GGG + tig0022300:6253-6272 None:intergenic 50.0%
CGAATTGGGTGTGGGAGAAA+TGG + tig0022300:6295-6314 None:intergenic 50.0%
ATCAGCAACTCTCTCAGAGG+TGG + tig0022300:6794-6813 None:intergenic 50.0%
AAACGCACCACCCTATCTTG+TGG + tig0022300:7070-7089 None:intergenic 50.0%
ACAAGATAGGGTGGTGCGTT+TGG - tig0022300:7069-7088 Msa1398840:CDS 50.0%
ATAGGGTGGTGCGTTTGGAA+TGG - tig0022300:7074-7093 Msa1398840:CDS 50.0%
! TAGGGTGGTGCGTTTGGAAT+GGG - tig0022300:7075-7094 Msa1398840:CDS 50.0%
! TGGTGCGTTTGGAATGGGAT+AGG - tig0022300:7080-7099 Msa1398840:CDS 50.0%
! TGCGTTTGGAATGGGATAGG+AGG - tig0022300:7083-7102 Msa1398840:CDS 50.0%
!! AGGAGGTACCTGTCTGTTCT+AGG - tig0022300:7100-7119 Msa1398840:CDS 50.0%
! TGTGTGAGTCGCATCGGCAA+TGG - tig0022300:6197-6216 Msa1398840:three_prime_UTR 55.0%
TGGGAGAAATGGAGCAGCGA+GGG + tig0022300:6284-6303 None:intergenic 55.0%
TTGGGTTCGCCTCAACAAGC+TGG - tig0022300:6691-6710 Msa1398840:intron 55.0%
TGGGTTCGCCTCAACAAGCT+GGG - tig0022300:6692-6711 Msa1398840:intron 55.0%
! TGTGTGAGTCGCATCGGCAA+TGG - tig0022300:6197-6216 Msa1398840:three_prime_UTR 55.0%
TGGGAGAAATGGAGCAGCGA+GGG + tig0022300:6284-6303 None:intergenic 55.0%
TTGGGTTCGCCTCAACAAGC+TGG - tig0022300:6691-6710 Msa1398840:intron 55.0%
TGGGTTCGCCTCAACAAGCT+GGG - tig0022300:6692-6711 Msa1398840:intron 55.0%
GGGAGAAATGGAGCAGCGAG+GGG + tig0022300:6283-6302 None:intergenic 60.0%
GTGGGAGAAATGGAGCAGCG+AGG + tig0022300:6285-6304 None:intergenic 60.0%
GGGAGAAATGGAGCAGCGAG+GGG + tig0022300:6283-6302 None:intergenic 60.0%
GTGGGAGAAATGGAGCAGCG+AGG + tig0022300:6285-6304 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0022300 gene 6007 7627 6007 ID=Msa1398840;Name=Msa1398840
tig0022300 mRNA 6007 7627 6007 ID=Msa1398840-mRNA-1;Parent=Msa1398840;Name=Msa1398840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=209|1|1|1|0.5|0.66|3|628|198
tig0022300 exon 6007 6612 6007 ID=Msa1398840-mRNA-1:exon:16860;Parent=Msa1398840-mRNA-1
tig0022300 exon 6703 7222 6703 ID=Msa1398840-mRNA-1:exon:16859;Parent=Msa1398840-mRNA-1
tig0022300 exon 7320 7627 7320 ID=Msa1398840-mRNA-1:exon:16858;Parent=Msa1398840-mRNA-1
tig0022300 five_prime_UTR 7419 7627 7419 ID=Msa1398840-mRNA-1:five_prime_utr;Parent=Msa1398840-mRNA-1
tig0022300 CDS 7320 7418 7320 ID=Msa1398840-mRNA-1:cds;Parent=Msa1398840-mRNA-1
tig0022300 CDS 6725 7222 6725 ID=Msa1398840-mRNA-1:cds;Parent=Msa1398840-mRNA-1
tig0022300 three_prime_UTR 6703 6724 6703 ID=Msa1398840-mRNA-1:three_prime_utr;Parent=Msa1398840-mRNA-1
tig0022300 three_prime_UTR 6007 6612 6007 ID=Msa1398840-mRNA-1:three_prime_utr;Parent=Msa1398840-mRNA-1
Gene Sequence

>Msa1398840

ATGGCCAGTACAATCACAACAACGGGTTTTCTAGCCCGACCCATGTCACCATTTCACTTTCATTCCCCTCGCTGCTCCATTTCTCCCACACCCAATTCGATTAAAGCAGCTTTTGCAGTTCCTAGAAGAAAAGCAATGTCATTAATCTTATCAACTTACATTCTCTCCGACATTGGTACAGCATTAGCACAACAACCTCGTGTGTTTCGTGAATATGTTGATACATTTGATGGTTATTCATTCAACTATCCATCAAATTGGATTCAAGTAAGAGGTGCTGGTGCTGATATTTTCTTCAGGGATCCTTATATTCTTGATGAAAATATATCGGTCGAAGTTTCTTCGCCTTCTTCTTCGAAATTCAAGACTGTTCAAGACTTGGGTTCGCCTCAACAAGCTGGGAAGAAAGTTCTTGATCAGTATCTTACTGAGTTTATGTCCACTAGGCTTGGTGTTAAACGTGAATCTAATATTCTTTCCACCTCTGAGAGAGTTGCTGATGATGGCAAATTGTACTATCAAGTTGAGGTTCGTTTACATTTATCAGAAAAATTGTGGTTAATCACGTTAACTCTGTTCTTGCAAAACTTACGGTAA

Protein sequence

>Msa1398840

MASTITTTGFLARPMSPFHFHSPRCSISPTPNSIKAAFAVPRRKAMSLILSTYILSDIGTALAQQPRVFREYVDTFDGYSFNYPSNWIQVRGAGADIFFRDPYILDENISVEVSSPSSSKFKTVQDLGSPQQAGKKVLDQYLTEFMSTRLGVKRESNILSTSERVADDGKLYYQVEVRLHLSEKLWLITLTLFLQNLR*