AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040010 MtrunA17_Chr7g0271611 95.600 250 10 1 1 249 1 250 8.08e-172 473
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040010 AT4G15510.1 64.659 249 76 5 10 247 40 287 3.20e-105 306
Msa1040010 AT4G15510.4 73.039 204 52 2 46 247 3 205 1.97e-103 299
Msa1040010 AT4G15510.5 73.039 204 52 2 46 247 3 205 1.97e-103 299
Msa1040010 AT4G15510.3 73.039 204 52 2 46 247 3 205 1.97e-103 299
Msa1040010 AT4G15510.2 69.595 148 40 3 35 178 72 218 1.25e-62 196

Find 75 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAACTATCCATCAAAT+TGG 0.259378 7_1:+77332260 Msa1040010:CDS
GGCTTCGTTTCGAGCAAATA+AGG 0.293344 7_1:+77332923 Msa1040010:CDS
TGAAATGGAATTTACCGAAT+TGG 0.296134 7_1:-77332010 None:intergenic
TGTACAAATGCAGCAAAGTT+TGG 0.296776 7_1:+77333085 Msa1040010:three_prime_UTR
CTTACTTGAATCCAATTTGA+TGG 0.303876 7_1:-77332271 None:intergenic
AGGAGGTACCTGTCTGTTCT+AGG 0.353510 7_1:+77332813 Msa1040010:CDS
GAATATGTTGATACATTTGA+TGG 0.354613 7_1:+77332232 Msa1040010:CDS
ACAAGATAGGGTGGTGCGTT+TGG 0.360551 7_1:+77332782 Msa1040010:CDS
TGTTATGCTTATAACAAAAC+TGG 0.364964 7_1:-77333160 None:intergenic
TTGCTGTTATGCCACAAGAT+AGG 0.370954 7_1:+77332769 Msa1040010:CDS
CAAAACTGGTCAAGAATAGA+AGG 0.391626 7_1:-77333146 None:intergenic
CGAATTGGGTGTGGGAGAAA+TGG 0.397956 7_1:-77331995 None:intergenic
GAAATGGAATTTACCGAATT+GGG 0.400644 7_1:-77332009 None:intergenic
CATTTCTCCCACACCCAATT+CGG 0.411234 7_1:+77331996 Msa1040010:CDS
GCCAATACAATCACAACAAC+GGG 0.413254 7_1:+77331922 Msa1040010:CDS
CTAGAATGTTGAAAATCAAA+AGG 0.435062 7_1:+77332959 Msa1040010:three_prime_UTR
TAGTGATACAGTATATCATT+TGG 0.443993 7_1:+77331723 Msa1040010:five_prime_UTR
TCAACTGCCGTTGTTAATGA+TGG 0.449571 7_1:+77333036 Msa1040010:three_prime_UTR
TAGGGTGGTGCGTTTGGAAT+GGG 0.452062 7_1:+77332788 Msa1040010:CDS
ATTCAAGACTGTTCAAGACT+TGG 0.455381 7_1:+77332381 Msa1040010:CDS
GGAATTTACCGAATTGGGTG+TGG 0.465108 7_1:-77332004 None:intergenic
TTGGGTTCGCCTCAACAAGC+TGG 0.465683 7_1:+77332400 Msa1040010:CDS
GAATTCACATGATGCTAATA+CGG 0.467654 7_1:-77333280 None:intergenic
TCAAATTGGATTCAAGTAAG+AGG 0.471228 7_1:+77332274 Msa1040010:CDS
CGAGGGGAATGGAAGTGAAA+TGG 0.477757 7_1:-77331967 None:intergenic
ACTTACATTCTCTCCGACAT+TGG 0.478283 7_1:+77332175 Msa1040010:CDS
TTCAAGACTGTTCAAGACTT+GGG 0.478605 7_1:+77332382 Msa1040010:CDS
ACTCACACAGCAAAGGCAAA+TGG 0.481060 7_1:-77331886 None:intergenic
TGGGAGAAATGGAGCAGCGA+GGG 0.485253 7_1:-77331984 None:intergenic
CATATGATCTTTGACCCACT+TGG 0.485479 7_1:+77333312 Msa1040010:three_prime_UTR
ACCCGTTGTTGTGATTGTAT+TGG 0.491544 7_1:-77331923 None:intergenic
AAATGGAGCAGCGAGGGGAA+TGG 0.491691 7_1:-77331978 None:intergenic
TGCTGTTATGCCACAAGATA+GGG 0.492092 7_1:+77332770 Msa1040010:CDS
GTGAAATGGTGACATGGGTC+GGG 0.494548 7_1:-77331953 None:intergenic
GAGTTTATGTCCACTAGGCT+TGG 0.508538 7_1:+77332451 Msa1040010:CDS
GGTCAAAGATCATATGAATA+CGG 0.509948 7_1:-77333305 None:intergenic
TGGATTCAAGTAAGAGGTGC+TGG 0.510176 7_1:+77332280 Msa1040010:CDS
AGAAAATGTGTTTCAAGAAG+AGG 0.524955 7_1:+77332878 Msa1040010:CDS
TCTGAGAGAGTTGCTGATGA+TGG 0.533806 7_1:+77332505 Msa1040010:CDS
ATAGGGTGGTGCGTTTGGAA+TGG 0.545277 7_1:+77332787 Msa1040010:CDS
CTTTGCTGTGTGAGTCGCAT+CGG 0.546482 7_1:+77331894 Msa1040010:five_prime_UTR
TGGGTTCGCCTCAACAAGCT+GGG 0.554823 7_1:+77332401 Msa1040010:CDS
TGGTGCGTTTGGAATGGGAT+AGG 0.554855 7_1:+77332793 Msa1040010:CDS
TAGAATGTTGAAAATCAAAA+GGG 0.556603 7_1:+77332960 Msa1040010:three_prime_UTR
TTACTGAGTTTATGTCCACT+AGG 0.557448 7_1:+77332446 Msa1040010:CDS
GTCTTGAATTTCGAAGAAGA+AGG 0.559580 7_1:-77332367 None:intergenic
ACTTTCTTCCCAGCTTGTTG+AGG 0.564235 7_1:-77332409 None:intergenic
AGTGAAATGGTGACATGGGT+CGG 0.571672 7_1:-77331954 None:intergenic
ATCAGCAACTCTCTCAGAGG+TGG 0.572411 7_1:-77332500 None:intergenic
ATCGCATTGTGGTGTGCGAT+TGG 0.573753 7_1:+77331816 Msa1040010:five_prime_UTR
GAATTTACCGAATTGGGTGT+GGG 0.577884 7_1:-77332003 None:intergenic
TTTCAACTCCTAGAACAGAC+AGG 0.577991 7_1:-77332821 None:intergenic
TGTGTGAGTCGCATCGGCAA+TGG 0.582093 7_1:+77331900 Msa1040010:exon
TATTCTTGATGAAAATATGT+CGG 0.585805 7_1:+77332330 Msa1040010:CDS
ATGGAAGTGAAATGGTGACA+TGG 0.594314 7_1:-77331959 None:intergenic
GAGTGAACTTCGTCAAGTCA+TGG 0.596736 7_1:+77332902 Msa1040010:CDS
ACGTTTAACACCAAGCCTAG+TGG 0.600812 7_1:-77332461 None:intergenic
CAAATTGTACTATCAAGTTG+AGG 0.601868 7_1:+77332528 Msa1040010:CDS
TCGATTGTTCGGACTCCAAG+TGG 0.603948 7_1:-77333327 None:intergenic
TGCTAATGCTGTACCAATGT+CGG 0.609859 7_1:-77332188 None:intergenic
GGCCAATACAATCACAACAA+CGG 0.609937 7_1:+77331921 Msa1040010:CDS
CTTGCAAGATTAATATGCGA+TGG 0.617092 7_1:+77333184 Msa1040010:three_prime_UTR
GTGGGAGAAATGGAGCAGCG+AGG 0.622596 7_1:-77331985 None:intergenic
TGCGTTTGGAATGGGATAGG+AGG 0.627210 7_1:+77332796 Msa1040010:CDS
CAGCAAAGTTTGGATTGAGA+TGG 0.629144 7_1:+77333095 Msa1040010:three_prime_UTR
AAACGCACCACCCTATCTTG+TGG 0.644066 7_1:-77332780 None:intergenic
CGATGCGACTCACACAGCAA+AGG 0.646688 7_1:-77331893 None:intergenic
CGATTGTTCGGACTCCAAGT+GGG 0.656545 7_1:-77333326 None:intergenic
TGGAAGTGAAATGGTGACAT+GGG 0.658481 7_1:-77331958 None:intergenic
GGGAGAAATGGAGCAGCGAG+GGG 0.672235 7_1:-77331983 None:intergenic
ATCATCAGCAACTCTCTCAG+AGG 0.672975 7_1:-77332503 None:intergenic
ACTGCTACCATCATTAACAA+CGG 0.699682 7_1:-77333043 None:intergenic
TGTTATGCCACAAGATAGGG+TGG 0.714139 7_1:+77332773 Msa1040010:CDS
ACATATTCACGAAACACACG+AGG 0.719885 7_1:-77332217 None:intergenic
AGATGGAAAGAATCGCATTG+TGG 0.729191 7_1:+77331805 Msa1040010:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAATAAATATAAAA+AGG + chr7_1:77331747-77331766 Msa1040010:five_prime_UTR 0.0%
!!! TTTTAAAATAAATATAAAAA+GGG + chr7_1:77331748-77331767 Msa1040010:five_prime_UTR 0.0%
!!! TTTTTAAAATAAATATAAAA+AGG + chr7_1:77331747-77331766 Msa1040010:five_prime_UTR 0.0%
!!! TTTTAAAATAAATATAAAAA+GGG + chr7_1:77331748-77331767 Msa1040010:five_prime_UTR 0.0%
!! TTAAAATAAATATAAAAAGG+GGG + chr7_1:77331750-77331769 Msa1040010:five_prime_UTR 10.0%
!! TTAAAATAAATATAAAAAGG+GGG + chr7_1:77331750-77331769 Msa1040010:five_prime_UTR 10.0%
!!! ATATTTTCATCAAGAATATA+AGG - chr7_1:77332328-77332347 None:intergenic 15.0%
!!! ATATTTTCATCAAGAATATA+AGG - chr7_1:77332328-77332347 None:intergenic 15.0%
!! ACGTAATTTAGAAAGAAAAA+AGG + chr7_1:77331778-77331797 Msa1040010:five_prime_UTR 20.0%
!! AAATAAAATAATTGTGACAG+AGG - chr7_1:77332046-77332065 None:intergenic 20.0%
!! TATTCTTGATGAAAATATGT+CGG + chr7_1:77332330-77332349 Msa1040010:CDS 20.0%
!! TACATTTATCAGAAAAATTG+TGG + chr7_1:77332557-77332576 Msa1040010:intron 20.0%
!! TAGAATGTTGAAAATCAAAA+GGG + chr7_1:77332960-77332979 Msa1040010:three_prime_UTR 20.0%
!! ACGTAATTTAGAAAGAAAAA+AGG + chr7_1:77331778-77331797 Msa1040010:five_prime_UTR 20.0%
!! AAATAAAATAATTGTGACAG+AGG - chr7_1:77332046-77332065 None:intergenic 20.0%
!! TATTCTTGATGAAAATATGT+CGG + chr7_1:77332330-77332349 Msa1040010:CDS 20.0%
!! TACATTTATCAGAAAAATTG+TGG + chr7_1:77332557-77332576 Msa1040010:intron 20.0%
!! TAGAATGTTGAAAATCAAAA+GGG + chr7_1:77332960-77332979 Msa1040010:three_prime_UTR 20.0%
! TAGTGATACAGTATATCATT+TGG + chr7_1:77331723-77331742 Msa1040010:five_prime_UTR 25.0%
! GAATATGTTGATACATTTGA+TGG + chr7_1:77332232-77332251 Msa1040010:CDS 25.0%
! CTAGAATGTTGAAAATCAAA+AGG + chr7_1:77332959-77332978 Msa1040010:three_prime_UTR 25.0%
! TGTTATGCTTATAACAAAAC+TGG - chr7_1:77333163-77333182 None:intergenic 25.0%
! TAGTGATACAGTATATCATT+TGG + chr7_1:77331723-77331742 Msa1040010:five_prime_UTR 25.0%
! GAATATGTTGATACATTTGA+TGG + chr7_1:77332232-77332251 Msa1040010:CDS 25.0%
! CTAGAATGTTGAAAATCAAA+AGG + chr7_1:77332959-77332978 Msa1040010:three_prime_UTR 25.0%
! TGTTATGCTTATAACAAAAC+TGG - chr7_1:77333163-77333182 None:intergenic 25.0%
GAAAGAAAAAAGGATTGAGA+TGG + chr7_1:77331788-77331807 Msa1040010:five_prime_UTR 30.0%
GAAATGGAATTTACCGAATT+GGG - chr7_1:77332012-77332031 None:intergenic 30.0%
TGAAATGGAATTTACCGAAT+TGG - chr7_1:77332013-77332032 None:intergenic 30.0%
!! AATGACATTGCTTTTCTTCT+AGG - chr7_1:77332145-77332164 None:intergenic 30.0%
CATTCAACTATCCATCAAAT+TGG + chr7_1:77332260-77332279 Msa1040010:CDS 30.0%
CTTACTTGAATCCAATTTGA+TGG - chr7_1:77332274-77332293 None:intergenic 30.0%
TCAAATTGGATTCAAGTAAG+AGG + chr7_1:77332274-77332293 Msa1040010:CDS 30.0%
! CAAATTGTACTATCAAGTTG+AGG + chr7_1:77332528-77332547 Msa1040010:CDS 30.0%
CAAAACTTACGGTAATTTGA+GGG + chr7_1:77332604-77332623 Msa1040010:intron 30.0%
AAAACTTACGGTAATTTGAG+GGG + chr7_1:77332605-77332624 Msa1040010:intron 30.0%
! TCTTCTTGAAACACATTTTC+TGG - chr7_1:77332879-77332898 None:intergenic 30.0%
AGAAAATGTGTTTCAAGAAG+AGG + chr7_1:77332878-77332897 Msa1040010:CDS 30.0%
GAATTCACATGATGCTAATA+CGG - chr7_1:77333283-77333302 None:intergenic 30.0%
GGTCAAAGATCATATGAATA+CGG - chr7_1:77333308-77333327 None:intergenic 30.0%
AAAAGAGAAGAGACCTAATT+CGG - chr7_1:77331702-77331721 None:intergenic 30.0%
GAAAGAAAAAAGGATTGAGA+TGG + chr7_1:77331788-77331807 Msa1040010:five_prime_UTR 30.0%
GAAATGGAATTTACCGAATT+GGG - chr7_1:77332012-77332031 None:intergenic 30.0%
TGAAATGGAATTTACCGAAT+TGG - chr7_1:77332013-77332032 None:intergenic 30.0%
!! AATGACATTGCTTTTCTTCT+AGG - chr7_1:77332145-77332164 None:intergenic 30.0%
CATTCAACTATCCATCAAAT+TGG + chr7_1:77332260-77332279 Msa1040010:CDS 30.0%
CTTACTTGAATCCAATTTGA+TGG - chr7_1:77332274-77332293 None:intergenic 30.0%
TCAAATTGGATTCAAGTAAG+AGG + chr7_1:77332274-77332293 Msa1040010:CDS 30.0%
! CAAATTGTACTATCAAGTTG+AGG + chr7_1:77332528-77332547 Msa1040010:CDS 30.0%
CAAAACTTACGGTAATTTGA+GGG + chr7_1:77332604-77332623 Msa1040010:intron 30.0%
AAAACTTACGGTAATTTGAG+GGG + chr7_1:77332605-77332624 Msa1040010:intron 30.0%
! TCTTCTTGAAACACATTTTC+TGG - chr7_1:77332879-77332898 None:intergenic 30.0%
AGAAAATGTGTTTCAAGAAG+AGG + chr7_1:77332878-77332897 Msa1040010:CDS 30.0%
GAATTCACATGATGCTAATA+CGG - chr7_1:77333283-77333302 None:intergenic 30.0%
GGTCAAAGATCATATGAATA+CGG - chr7_1:77333308-77333327 None:intergenic 30.0%
!!! TGGTGCTGATATTTTCTTCA+GGG + chr7_1:77332300-77332319 Msa1040010:CDS 35.0%
GTCTTGAATTTCGAAGAAGA+AGG - chr7_1:77332370-77332389 None:intergenic 35.0%
ATTCAAGACTGTTCAAGACT+TGG + chr7_1:77332381-77332400 Msa1040010:CDS 35.0%
TTCAAGACTGTTCAAGACTT+GGG + chr7_1:77332382-77332401 Msa1040010:CDS 35.0%
TTACTGAGTTTATGTCCACT+AGG + chr7_1:77332446-77332465 Msa1040010:CDS 35.0%
CTCTGTTCTTGCAAAACTTA+CGG + chr7_1:77332593-77332612 Msa1040010:intron 35.0%
GCAAAACTTACGGTAATTTG+AGG + chr7_1:77332603-77332622 Msa1040010:intron 35.0%
!!! TTTGAGGGGTGTCTTTTATA+TGG + chr7_1:77332619-77332638 Msa1040010:intron 35.0%
! GGGTGTCTTTTATATGGTAA+TGG + chr7_1:77332625-77332644 Msa1040010:intron 35.0%
ACTGCTACCATCATTAACAA+CGG - chr7_1:77333046-77333065 None:intergenic 35.0%
TGTACAAATGCAGCAAAGTT+TGG + chr7_1:77333085-77333104 Msa1040010:three_prime_UTR 35.0%
CAAAACTGGTCAAGAATAGA+AGG - chr7_1:77333149-77333168 None:intergenic 35.0%
CTTGCAAGATTAATATGCGA+TGG + chr7_1:77333184-77333203 Msa1040010:three_prime_UTR 35.0%
!!! TGGTGCTGATATTTTCTTCA+GGG + chr7_1:77332300-77332319 Msa1040010:CDS 35.0%
GTCTTGAATTTCGAAGAAGA+AGG - chr7_1:77332370-77332389 None:intergenic 35.0%
ATTCAAGACTGTTCAAGACT+TGG + chr7_1:77332381-77332400 Msa1040010:CDS 35.0%
TTCAAGACTGTTCAAGACTT+GGG + chr7_1:77332382-77332401 Msa1040010:CDS 35.0%
TTACTGAGTTTATGTCCACT+AGG + chr7_1:77332446-77332465 Msa1040010:CDS 35.0%
CTCTGTTCTTGCAAAACTTA+CGG + chr7_1:77332593-77332612 Msa1040010:intron 35.0%
GCAAAACTTACGGTAATTTG+AGG + chr7_1:77332603-77332622 Msa1040010:intron 35.0%
!!! TTTGAGGGGTGTCTTTTATA+TGG + chr7_1:77332619-77332638 Msa1040010:intron 35.0%
! GGGTGTCTTTTATATGGTAA+TGG + chr7_1:77332625-77332644 Msa1040010:intron 35.0%
ACTGCTACCATCATTAACAA+CGG - chr7_1:77333046-77333065 None:intergenic 35.0%
TGTACAAATGCAGCAAAGTT+TGG + chr7_1:77333085-77333104 Msa1040010:three_prime_UTR 35.0%
CAAAACTGGTCAAGAATAGA+AGG - chr7_1:77333149-77333168 None:intergenic 35.0%
CTTGCAAGATTAATATGCGA+TGG + chr7_1:77333184-77333203 Msa1040010:three_prime_UTR 35.0%
AGATGGAAAGAATCGCATTG+TGG + chr7_1:77331805-77331824 Msa1040010:five_prime_UTR 40.0%
GGCCAATACAATCACAACAA+CGG + chr7_1:77331921-77331940 Msa1040010:CDS 40.0%
GCCAATACAATCACAACAAC+GGG + chr7_1:77331922-77331941 Msa1040010:CDS 40.0%
ACCCGTTGTTGTGATTGTAT+TGG - chr7_1:77331926-77331945 None:intergenic 40.0%
TGGAAGTGAAATGGTGACAT+GGG - chr7_1:77331961-77331980 None:intergenic 40.0%
ATGGAAGTGAAATGGTGACA+TGG - chr7_1:77331962-77331981 None:intergenic 40.0%
GAATTTACCGAATTGGGTGT+GGG - chr7_1:77332006-77332025 None:intergenic 40.0%
AGAGGAGAAAGCTCATGAAA+TGG - chr7_1:77332028-77332047 None:intergenic 40.0%
ACTTACATTCTCTCCGACAT+TGG + chr7_1:77332175-77332194 Msa1040010:CDS 40.0%
TGCTAATGCTGTACCAATGT+CGG - chr7_1:77332191-77332210 None:intergenic 40.0%
ACATATTCACGAAACACACG+AGG - chr7_1:77332220-77332239 None:intergenic 40.0%
!!! CTGGTGCTGATATTTTCTTC+AGG + chr7_1:77332299-77332318 Msa1040010:CDS 40.0%
!! TGTGTGTTGTTTGTGTTGCT+AGG + chr7_1:77332713-77332732 Msa1040010:intron 40.0%
! TTGCTGTTATGCCACAAGAT+AGG + chr7_1:77332769-77332788 Msa1040010:CDS 40.0%
TGCTGTTATGCCACAAGATA+GGG + chr7_1:77332770-77332789 Msa1040010:CDS 40.0%
TTTCAACTCCTAGAACAGAC+AGG - chr7_1:77332824-77332843 None:intergenic 40.0%
TCAACTGCCGTTGTTAATGA+TGG + chr7_1:77333036-77333055 Msa1040010:three_prime_UTR 40.0%
CAGCAAAGTTTGGATTGAGA+TGG + chr7_1:77333095-77333114 Msa1040010:three_prime_UTR 40.0%
CATATGATCTTTGACCCACT+TGG + chr7_1:77333312-77333331 Msa1040010:three_prime_UTR 40.0%
AGATGGAAAGAATCGCATTG+TGG + chr7_1:77331805-77331824 Msa1040010:five_prime_UTR 40.0%
GGCCAATACAATCACAACAA+CGG + chr7_1:77331921-77331940 Msa1040010:CDS 40.0%
GCCAATACAATCACAACAAC+GGG + chr7_1:77331922-77331941 Msa1040010:CDS 40.0%
ACCCGTTGTTGTGATTGTAT+TGG - chr7_1:77331926-77331945 None:intergenic 40.0%
TGGAAGTGAAATGGTGACAT+GGG - chr7_1:77331961-77331980 None:intergenic 40.0%
ATGGAAGTGAAATGGTGACA+TGG - chr7_1:77331962-77331981 None:intergenic 40.0%
GAATTTACCGAATTGGGTGT+GGG - chr7_1:77332006-77332025 None:intergenic 40.0%
AGAGGAGAAAGCTCATGAAA+TGG - chr7_1:77332028-77332047 None:intergenic 40.0%
ACTTACATTCTCTCCGACAT+TGG + chr7_1:77332175-77332194 Msa1040010:CDS 40.0%
TGCTAATGCTGTACCAATGT+CGG - chr7_1:77332191-77332210 None:intergenic 40.0%
ACATATTCACGAAACACACG+AGG - chr7_1:77332220-77332239 None:intergenic 40.0%
!!! CTGGTGCTGATATTTTCTTC+AGG + chr7_1:77332299-77332318 Msa1040010:CDS 40.0%
!! TGTGTGTTGTTTGTGTTGCT+AGG + chr7_1:77332713-77332732 Msa1040010:intron 40.0%
! TTGCTGTTATGCCACAAGAT+AGG + chr7_1:77332769-77332788 Msa1040010:CDS 40.0%
TGCTGTTATGCCACAAGATA+GGG + chr7_1:77332770-77332789 Msa1040010:CDS 40.0%
TTTCAACTCCTAGAACAGAC+AGG - chr7_1:77332824-77332843 None:intergenic 40.0%
TCAACTGCCGTTGTTAATGA+TGG + chr7_1:77333036-77333055 Msa1040010:three_prime_UTR 40.0%
CAGCAAAGTTTGGATTGAGA+TGG + chr7_1:77333095-77333114 Msa1040010:three_prime_UTR 40.0%
CATATGATCTTTGACCCACT+TGG + chr7_1:77333312-77333331 Msa1040010:three_prime_UTR 40.0%
ACTCACACAGCAAAGGCAAA+TGG - chr7_1:77331889-77331908 None:intergenic 45.0%
AGTGAAATGGTGACATGGGT+CGG - chr7_1:77331957-77331976 None:intergenic 45.0%
CATTTCTCCCACACCCAATT+CGG + chr7_1:77331996-77332015 Msa1040010:CDS 45.0%
GGAATTTACCGAATTGGGTG+TGG - chr7_1:77332007-77332026 None:intergenic 45.0%
! TGGATTCAAGTAAGAGGTGC+TGG + chr7_1:77332280-77332299 Msa1040010:CDS 45.0%
!! ACTTTCTTCCCAGCTTGTTG+AGG - chr7_1:77332412-77332431 None:intergenic 45.0%
GAGTTTATGTCCACTAGGCT+TGG + chr7_1:77332451-77332470 Msa1040010:CDS 45.0%
ACGTTTAACACCAAGCCTAG+TGG - chr7_1:77332464-77332483 None:intergenic 45.0%
ATCATCAGCAACTCTCTCAG+AGG - chr7_1:77332506-77332525 None:intergenic 45.0%
TCTGAGAGAGTTGCTGATGA+TGG + chr7_1:77332505-77332524 Msa1040010:CDS 45.0%
TGTTATGCCACAAGATAGGG+TGG + chr7_1:77332773-77332792 Msa1040010:CDS 45.0%
GAGTGAACTTCGTCAAGTCA+TGG + chr7_1:77332902-77332921 Msa1040010:CDS 45.0%
GGCTTCGTTTCGAGCAAATA+AGG + chr7_1:77332923-77332942 Msa1040010:CDS 45.0%
ACTCACACAGCAAAGGCAAA+TGG - chr7_1:77331889-77331908 None:intergenic 45.0%
AGTGAAATGGTGACATGGGT+CGG - chr7_1:77331957-77331976 None:intergenic 45.0%
CATTTCTCCCACACCCAATT+CGG + chr7_1:77331996-77332015 Msa1040010:CDS 45.0%
GGAATTTACCGAATTGGGTG+TGG - chr7_1:77332007-77332026 None:intergenic 45.0%
! TGGATTCAAGTAAGAGGTGC+TGG + chr7_1:77332280-77332299 Msa1040010:CDS 45.0%
!! ACTTTCTTCCCAGCTTGTTG+AGG - chr7_1:77332412-77332431 None:intergenic 45.0%
GAGTTTATGTCCACTAGGCT+TGG + chr7_1:77332451-77332470 Msa1040010:CDS 45.0%
ACGTTTAACACCAAGCCTAG+TGG - chr7_1:77332464-77332483 None:intergenic 45.0%
ATCATCAGCAACTCTCTCAG+AGG - chr7_1:77332506-77332525 None:intergenic 45.0%
TCTGAGAGAGTTGCTGATGA+TGG + chr7_1:77332505-77332524 Msa1040010:CDS 45.0%
TGTTATGCCACAAGATAGGG+TGG + chr7_1:77332773-77332792 Msa1040010:CDS 45.0%
GAGTGAACTTCGTCAAGTCA+TGG + chr7_1:77332902-77332921 Msa1040010:CDS 45.0%
GGCTTCGTTTCGAGCAAATA+AGG + chr7_1:77332923-77332942 Msa1040010:CDS 45.0%
!!! TTTAAAATAAATATAAAAAG+GGG + chr7_1:77331749-77331768 Msa1040010:five_prime_UTR 5.0%
!!! TTTAAAATAAATATAAAAAG+GGG + chr7_1:77331749-77331768 Msa1040010:five_prime_UTR 5.0%
ATCGCATTGTGGTGTGCGAT+TGG + chr7_1:77331816-77331835 Msa1040010:five_prime_UTR 50.0%
! CTTTGCTGTGTGAGTCGCAT+CGG + chr7_1:77331894-77331913 Msa1040010:five_prime_UTR 50.0%
GTGAAATGGTGACATGGGTC+GGG - chr7_1:77331956-77331975 None:intergenic 50.0%
CGAGGGGAATGGAAGTGAAA+TGG - chr7_1:77331970-77331989 None:intergenic 50.0%
CGAATTGGGTGTGGGAGAAA+TGG - chr7_1:77331998-77332017 None:intergenic 50.0%
ATCAGCAACTCTCTCAGAGG+TGG - chr7_1:77332503-77332522 None:intergenic 50.0%
AAACGCACCACCCTATCTTG+TGG - chr7_1:77332783-77332802 None:intergenic 50.0%
ACAAGATAGGGTGGTGCGTT+TGG + chr7_1:77332782-77332801 Msa1040010:CDS 50.0%
ATAGGGTGGTGCGTTTGGAA+TGG + chr7_1:77332787-77332806 Msa1040010:CDS 50.0%
! TAGGGTGGTGCGTTTGGAAT+GGG + chr7_1:77332788-77332807 Msa1040010:CDS 50.0%
! TGGTGCGTTTGGAATGGGAT+AGG + chr7_1:77332793-77332812 Msa1040010:CDS 50.0%
! TGCGTTTGGAATGGGATAGG+AGG + chr7_1:77332796-77332815 Msa1040010:CDS 50.0%
!! AGGAGGTACCTGTCTGTTCT+AGG + chr7_1:77332813-77332832 Msa1040010:CDS 50.0%
ATCGCATTGTGGTGTGCGAT+TGG + chr7_1:77331816-77331835 Msa1040010:five_prime_UTR 50.0%
! CTTTGCTGTGTGAGTCGCAT+CGG + chr7_1:77331894-77331913 Msa1040010:five_prime_UTR 50.0%
GTGAAATGGTGACATGGGTC+GGG - chr7_1:77331956-77331975 None:intergenic 50.0%
CGAGGGGAATGGAAGTGAAA+TGG - chr7_1:77331970-77331989 None:intergenic 50.0%
CGAATTGGGTGTGGGAGAAA+TGG - chr7_1:77331998-77332017 None:intergenic 50.0%
ATCAGCAACTCTCTCAGAGG+TGG - chr7_1:77332503-77332522 None:intergenic 50.0%
AAACGCACCACCCTATCTTG+TGG - chr7_1:77332783-77332802 None:intergenic 50.0%
ACAAGATAGGGTGGTGCGTT+TGG + chr7_1:77332782-77332801 Msa1040010:CDS 50.0%
ATAGGGTGGTGCGTTTGGAA+TGG + chr7_1:77332787-77332806 Msa1040010:CDS 50.0%
! TAGGGTGGTGCGTTTGGAAT+GGG + chr7_1:77332788-77332807 Msa1040010:CDS 50.0%
! TGGTGCGTTTGGAATGGGAT+AGG + chr7_1:77332793-77332812 Msa1040010:CDS 50.0%
! TGCGTTTGGAATGGGATAGG+AGG + chr7_1:77332796-77332815 Msa1040010:CDS 50.0%
!! AGGAGGTACCTGTCTGTTCT+AGG + chr7_1:77332813-77332832 Msa1040010:CDS 50.0%
CGATGCGACTCACACAGCAA+AGG - chr7_1:77331896-77331915 None:intergenic 55.0%
! TGTGTGAGTCGCATCGGCAA+TGG + chr7_1:77331900-77331919 Msa1040010:exon 55.0%
AAATGGAGCAGCGAGGGGAA+TGG - chr7_1:77331981-77332000 None:intergenic 55.0%
TGGGAGAAATGGAGCAGCGA+GGG - chr7_1:77331987-77332006 None:intergenic 55.0%
TTGGGTTCGCCTCAACAAGC+TGG + chr7_1:77332400-77332419 Msa1040010:CDS 55.0%
TGGGTTCGCCTCAACAAGCT+GGG + chr7_1:77332401-77332420 Msa1040010:CDS 55.0%
CGATGCGACTCACACAGCAA+AGG - chr7_1:77331896-77331915 None:intergenic 55.0%
! TGTGTGAGTCGCATCGGCAA+TGG + chr7_1:77331900-77331919 Msa1040010:exon 55.0%
AAATGGAGCAGCGAGGGGAA+TGG - chr7_1:77331981-77332000 None:intergenic 55.0%
TGGGAGAAATGGAGCAGCGA+GGG - chr7_1:77331987-77332006 None:intergenic 55.0%
TTGGGTTCGCCTCAACAAGC+TGG + chr7_1:77332400-77332419 Msa1040010:CDS 55.0%
TGGGTTCGCCTCAACAAGCT+GGG + chr7_1:77332401-77332420 Msa1040010:CDS 55.0%
GGGAGAAATGGAGCAGCGAG+GGG - chr7_1:77331986-77332005 None:intergenic 60.0%
GTGGGAGAAATGGAGCAGCG+AGG - chr7_1:77331988-77332007 None:intergenic 60.0%
GGGAGAAATGGAGCAGCGAG+GGG - chr7_1:77331986-77332005 None:intergenic 60.0%
GTGGGAGAAATGGAGCAGCG+AGG - chr7_1:77331988-77332007 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77331702 77333340 77331702 ID=Msa1040010;Name=Msa1040010
chr7_1 mRNA 77331702 77333340 77331702 ID=Msa1040010-mRNA-1;Parent=Msa1040010;Name=Msa1040010-mRNA-1;_AED=0.09;_eAED=0.09;_QI=217|1|1|1|1|1|3|384|249
chr7_1 exon 77331702 77332017 77331702 ID=Msa1040010-mRNA-1:exon:20305;Parent=Msa1040010-mRNA-1
chr7_1 exon 77332121 77332549 77332121 ID=Msa1040010-mRNA-1:exon:20306;Parent=Msa1040010-mRNA-1
chr7_1 exon 77332735 77333340 77332735 ID=Msa1040010-mRNA-1:exon:20307;Parent=Msa1040010-mRNA-1
chr7_1 five_prime_UTR 77331702 77331918 77331702 ID=Msa1040010-mRNA-1:five_prime_utr;Parent=Msa1040010-mRNA-1
chr7_1 CDS 77331919 77332017 77331919 ID=Msa1040010-mRNA-1:cds;Parent=Msa1040010-mRNA-1
chr7_1 CDS 77332121 77332549 77332121 ID=Msa1040010-mRNA-1:cds;Parent=Msa1040010-mRNA-1
chr7_1 CDS 77332735 77332956 77332735 ID=Msa1040010-mRNA-1:cds;Parent=Msa1040010-mRNA-1
chr7_1 three_prime_UTR 77332957 77333340 77332957 ID=Msa1040010-mRNA-1:three_prime_utr;Parent=Msa1040010-mRNA-1
Gene Sequence

>Msa1040010

ATGGCCAATACAATCACAACAACGGGTTTTCTAGCCCGACCCATGTCACCATTTCACTTCCATTCCCCTCGCTGCTCCATTTCTCCCACACCCAATTCGATTAAAGCAGCTTTTGCAGTTCCTAGAAGAAAAGCAATGTCATTAATCTTATCAACTTACATTCTCTCCGACATTGGTACAGCATTAGCACAACAACCTCGTGTGTTTCGTGAATATGTTGATACATTTGATGGTTATTCATTCAACTATCCATCAAATTGGATTCAAGTAAGAGGTGCTGGTGCTGATATTTTCTTCAGGGATCCTTATATTCTTGATGAAAATATGTCGGTCGAAGTTTCTTCGCCTTCTTCTTCGAAATTCAAGACTGTTCAAGACTTGGGTTCGCCTCAACAAGCTGGGAAGAAAGTTCTTGATCAGTATCTTACTGAGTTTATGTCCACTAGGCTTGGTGTTAAACGTGAATCTAATATTCTTTCCACCTCTGAGAGAGTTGCTGATGATGGCAAATTGTACTATCAAGTTGAGGCGAACATAAAGTCATATGCTAGTAACAACGAGCTTGCTGTTATGCCACAAGATAGGGTGGTGCGTTTGGAATGGGATAGGAGGTACCTGTCTGTTCTAGGAGTTGAAAACAATCAACTGTATGAGTTGAGATTACAAGTGCCAGAAAATGTGTTTCAAGAAGAGGAGAGTGAACTTCGTCAAGTCATGGCTTCGTTTCGAGCAAATAAGGTTGTTCGTTAG

Protein sequence

>Msa1040010

MANTITTTGFLARPMSPFHFHSPRCSISPTPNSIKAAFAVPRRKAMSLILSTYILSDIGTALAQQPRVFREYVDTFDGYSFNYPSNWIQVRGAGADIFFRDPYILDENMSVEVSSPSSSKFKTVQDLGSPQQAGKKVLDQYLTEFMSTRLGVKRESNILSTSERVADDGKLYYQVEANIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQVPENVFQEEESELRQVMASFRANKVVR*