AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1127510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127510 MtrunA17_Chr7g0271611 95.600 250 10 1 1 249 1 250 2.03e-171 472
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1127510 AT4G15510.1 64.659 249 76 5 10 247 40 287 3.65e-105 306
Msa1127510 AT4G15510.4 73.039 204 52 2 46 247 3 205 1.65e-103 299
Msa1127510 AT4G15510.5 73.039 204 52 2 46 247 3 205 1.65e-103 299
Msa1127510 AT4G15510.3 73.039 204 52 2 46 247 3 205 1.65e-103 299
Msa1127510 AT4G15510.2 69.595 148 40 3 35 178 72 218 1.45e-62 196

Find 73 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCAACTATCCATCAAAT+TGG 0.259378 7_3:+79155459 Msa1127510:CDS
GGCTTCGTTTCGAGCAAATA+AGG 0.293344 7_3:+79156122 Msa1127510:CDS
TGAAATGGAATTTACCGAAT+TGG 0.296134 7_3:-79155214 None:intergenic
TGTACAAATGCAGCAAAGTT+TGG 0.296776 7_3:+79156284 Msa1127510:three_prime_UTR
CTTACTTGAATCCAATTTGA+TGG 0.303876 7_3:-79155470 None:intergenic
AGGAGGTACCTGTCTGTTCT+AGG 0.353510 7_3:+79156012 Msa1127510:CDS
GAATATGTTGATACATTTGA+TGG 0.354613 7_3:+79155431 Msa1127510:CDS
ACAAGATAGGGTGGTGCGTT+TGG 0.360551 7_3:+79155981 Msa1127510:CDS
TGTTATGCTTATAACAAAAC+TGG 0.364964 7_3:-79156359 None:intergenic
TTGCTGTTATGCCACAAGAT+AGG 0.370954 7_3:+79155968 Msa1127510:CDS
CAAAACTGGTCAAGAATAGA+AGG 0.391626 7_3:-79156345 None:intergenic
CGAATTGGGTGTGGGAGAAA+TGG 0.397956 7_3:-79155199 None:intergenic
GAAATGGAATTTACCGAATT+GGG 0.400644 7_3:-79155213 None:intergenic
CTAGAATGTTGTAAATCAAA+AGG 0.409063 7_3:+79156158 Msa1127510:three_prime_UTR
CATTTCTCCCACACCCAATT+CGG 0.411234 7_3:+79155200 Msa1127510:CDS
GCCAGTACAATCACAACAAC+GGG 0.439743 7_3:+79155126 Msa1127510:CDS
TATTCTTGATGAAAATATAT+CGG 0.441156 7_3:+79155529 Msa1127510:CDS
TAGTGATACAGTATATCATT+TGG 0.443993 7_3:+79154935 Msa1127510:five_prime_UTR
TCAACTGCCGTTGTTAATGA+TGG 0.449571 7_3:+79156235 Msa1127510:three_prime_UTR
TAGGGTGGTGCGTTTGGAAT+GGG 0.452062 7_3:+79155987 Msa1127510:CDS
ATTCAAGACTGTTCAAGACT+TGG 0.455381 7_3:+79155580 Msa1127510:CDS
GGAATTTACCGAATTGGGTG+TGG 0.465108 7_3:-79155208 None:intergenic
TTGGGTTCGCCTCAACAAGC+TGG 0.465683 7_3:+79155599 Msa1127510:CDS
GAATTCACATGATGCTAATA+CGG 0.467654 7_3:-79156479 None:intergenic
TCAAATTGGATTCAAGTAAG+AGG 0.471228 7_3:+79155473 Msa1127510:CDS
ACTTACATTCTCTCCGACAT+TGG 0.478283 7_3:+79155374 Msa1127510:CDS
TTCAAGACTGTTCAAGACTT+GGG 0.478605 7_3:+79155581 Msa1127510:CDS
TGGGAGAAATGGAGCAGCGA+GGG 0.485253 7_3:-79155188 None:intergenic
CATATGATCTTTGACCCACT+TGG 0.485479 7_3:+79156511 Msa1127510:three_prime_UTR
TGCTGTTATGCCACAAGATA+GGG 0.492092 7_3:+79155969 Msa1127510:CDS
GTGAAATGGTGACATGGGTC+GGG 0.494548 7_3:-79155157 None:intergenic
ACTCACACAGCAAAAGCAAA+TGG 0.499462 7_3:-79155090 None:intergenic
CGAGGGGAATGAAAGTGAAA+TGG 0.506248 7_3:-79155171 None:intergenic
GAGTTTATGTCCACTAGGCT+TGG 0.508538 7_3:+79155650 Msa1127510:CDS
GGTCAAAGATCATATGAATA+CGG 0.509948 7_3:-79156504 None:intergenic
TGGATTCAAGTAAGAGGTGC+TGG 0.510176 7_3:+79155479 Msa1127510:CDS
AGAAAATGTGTTTCAAGAAG+AGG 0.524955 7_3:+79156077 Msa1127510:CDS
TAGAATGTTGTAAATCAAAA+GGG 0.529208 7_3:+79156159 Msa1127510:three_prime_UTR
TCTGAGAGAGTTGCTGATGA+TGG 0.533806 7_3:+79155704 Msa1127510:CDS
ATAGGGTGGTGCGTTTGGAA+TGG 0.545277 7_3:+79155986 Msa1127510:CDS
TGGGTTCGCCTCAACAAGCT+GGG 0.554823 7_3:+79155600 Msa1127510:CDS
TGGTGCGTTTGGAATGGGAT+AGG 0.554855 7_3:+79155992 Msa1127510:CDS
TTACTGAGTTTATGTCCACT+AGG 0.557448 7_3:+79155645 Msa1127510:CDS
GTCTTGAATTTCGAAGAAGA+AGG 0.559580 7_3:-79155566 None:intergenic
GTAATCTCAACTCATACAGT+TGG 0.560478 7_3:-79156047 None:intergenic
ACTTTCTTCCCAGCTTGTTG+AGG 0.564235 7_3:-79155608 None:intergenic
ACCCGTTGTTGTGATTGTAC+TGG 0.564552 7_3:-79155127 None:intergenic
ATCAGCAACTCTCTCAGAGG+TGG 0.572411 7_3:-79155699 None:intergenic
ATCGCATTGTGGTGTGCGAT+TGG 0.573753 7_3:+79155027 Msa1127510:five_prime_UTR
GAATTTACCGAATTGGGTGT+GGG 0.577884 7_3:-79155207 None:intergenic
TTTCAACTCCTAGAACAGAC+AGG 0.577991 7_3:-79156020 None:intergenic
TGTGTGAGTCGCATCGGCAA+TGG 0.582093 7_3:+79155104 Msa1127510:exon
GAGTGAACTTCGTCAAGTCA+TGG 0.596736 7_3:+79156101 Msa1127510:CDS
ACGTTTAACACCAAGCCTAG+TGG 0.600812 7_3:-79155660 None:intergenic
CAAATTGTACTATCAAGTTG+AGG 0.601868 7_3:+79155727 Msa1127510:CDS
TCGATTGTTCGGACTCCAAG+TGG 0.603948 7_3:-79156526 None:intergenic
TGCTAATGCTGTACCAATGT+CGG 0.609859 7_3:-79155387 None:intergenic
AGTGAAATGGTGACATGGGT+CGG 0.610100 7_3:-79155158 None:intergenic
CTTGCAAGATTAATATGCGA+TGG 0.617092 7_3:+79156383 Msa1127510:three_prime_UTR
GTGGGAGAAATGGAGCAGCG+AGG 0.622596 7_3:-79155189 None:intergenic
TGCGTTTGGAATGGGATAGG+AGG 0.627210 7_3:+79155995 Msa1127510:CDS
CAGCAAAGTTTGGATTGAGA+TGG 0.629144 7_3:+79156294 Msa1127510:three_prime_UTR
ATGAAAGTGAAATGGTGACA+TGG 0.635725 7_3:-79155163 None:intergenic
GGCCAGTACAATCACAACAA+CGG 0.639092 7_3:+79155125 Msa1127510:CDS
AAACGCACCACCCTATCTTG+TGG 0.644066 7_3:-79155979 None:intergenic
CGATTGTTCGGACTCCAAGT+GGG 0.656545 7_3:-79156525 None:intergenic
TGAAAGTGAAATGGTGACAT+GGG 0.668816 7_3:-79155162 None:intergenic
GGGAGAAATGGAGCAGCGAG+GGG 0.672235 7_3:-79155187 None:intergenic
ATCATCAGCAACTCTCTCAG+AGG 0.672975 7_3:-79155702 None:intergenic
ACTGCTACCATCATTAACAA+CGG 0.699682 7_3:-79156242 None:intergenic
TGTTATGCCACAAGATAGGG+TGG 0.714139 7_3:+79155972 Msa1127510:CDS
ACATATTCACGAAACACACG+AGG 0.719885 7_3:-79155416 None:intergenic
AGATGGAAAGAATCGCATTG+TGG 0.729191 7_3:+79155016 Msa1127510:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAAATAAATATAAAA+AGG + chr7_3:79154959-79154978 Msa1127510:five_prime_UTR 0.0%
!!! TTTTAAAATAAATATAAAAA+GGG + chr7_3:79154960-79154979 Msa1127510:five_prime_UTR 0.0%
!!! TTTTTAAAATAAATATAAAA+AGG + chr7_3:79154959-79154978 Msa1127510:five_prime_UTR 0.0%
!!! TTTTAAAATAAATATAAAAA+GGG + chr7_3:79154960-79154979 Msa1127510:five_prime_UTR 0.0%
!!! ATATTTTCATCAAGAATATA+AGG - chr7_3:79155527-79155546 None:intergenic 15.0%
!! TATTCTTGATGAAAATATAT+CGG + chr7_3:79155529-79155548 Msa1127510:CDS 15.0%
!!! ATATTTTCATCAAGAATATA+AGG - chr7_3:79155527-79155546 None:intergenic 15.0%
!! TATTCTTGATGAAAATATAT+CGG + chr7_3:79155529-79155548 Msa1127510:CDS 15.0%
!! ACGTAATTTAGAAAGAAAAA+AGG + chr7_3:79154989-79155008 Msa1127510:five_prime_UTR 20.0%
!! AAATAAAATAATTGTGACAG+AGG - chr7_3:79155250-79155269 None:intergenic 20.0%
!! TACATTTATCAGAAAAATTG+TGG + chr7_3:79155756-79155775 Msa1127510:intron 20.0%
!! TAGAATGTTGTAAATCAAAA+GGG + chr7_3:79156159-79156178 Msa1127510:three_prime_UTR 20.0%
!! ACGTAATTTAGAAAGAAAAA+AGG + chr7_3:79154989-79155008 Msa1127510:five_prime_UTR 20.0%
!! AAATAAAATAATTGTGACAG+AGG - chr7_3:79155250-79155269 None:intergenic 20.0%
!! TACATTTATCAGAAAAATTG+TGG + chr7_3:79155756-79155775 Msa1127510:intron 20.0%
!! TAGAATGTTGTAAATCAAAA+GGG + chr7_3:79156159-79156178 Msa1127510:three_prime_UTR 20.0%
! TAGTGATACAGTATATCATT+TGG + chr7_3:79154935-79154954 Msa1127510:five_prime_UTR 25.0%
! GAATATGTTGATACATTTGA+TGG + chr7_3:79155431-79155450 Msa1127510:CDS 25.0%
! CTAGAATGTTGTAAATCAAA+AGG + chr7_3:79156158-79156177 Msa1127510:three_prime_UTR 25.0%
! TGTTATGCTTATAACAAAAC+TGG - chr7_3:79156362-79156381 None:intergenic 25.0%
! TAGTGATACAGTATATCATT+TGG + chr7_3:79154935-79154954 Msa1127510:five_prime_UTR 25.0%
! GAATATGTTGATACATTTGA+TGG + chr7_3:79155431-79155450 Msa1127510:CDS 25.0%
! CTAGAATGTTGTAAATCAAA+AGG + chr7_3:79156158-79156177 Msa1127510:three_prime_UTR 25.0%
! TGTTATGCTTATAACAAAAC+TGG - chr7_3:79156362-79156381 None:intergenic 25.0%
GAAAGAAAAAAGGATTGAGA+TGG + chr7_3:79154999-79155018 Msa1127510:five_prime_UTR 30.0%
GAAATGGAATTTACCGAATT+GGG - chr7_3:79155216-79155235 None:intergenic 30.0%
TGAAATGGAATTTACCGAAT+TGG - chr7_3:79155217-79155236 None:intergenic 30.0%
!! AATGACATTGCTTTTCTTCT+AGG - chr7_3:79155344-79155363 None:intergenic 30.0%
CATTCAACTATCCATCAAAT+TGG + chr7_3:79155459-79155478 Msa1127510:CDS 30.0%
CTTACTTGAATCCAATTTGA+TGG - chr7_3:79155473-79155492 None:intergenic 30.0%
TCAAATTGGATTCAAGTAAG+AGG + chr7_3:79155473-79155492 Msa1127510:CDS 30.0%
! CAAATTGTACTATCAAGTTG+AGG + chr7_3:79155727-79155746 Msa1127510:CDS 30.0%
CAAAACTTACGGTAATTTGA+GGG + chr7_3:79155803-79155822 Msa1127510:intron 30.0%
AAAACTTACGGTAATTTGAG+GGG + chr7_3:79155804-79155823 Msa1127510:intron 30.0%
! TCTTCTTGAAACACATTTTC+TGG - chr7_3:79156078-79156097 None:intergenic 30.0%
AGAAAATGTGTTTCAAGAAG+AGG + chr7_3:79156077-79156096 Msa1127510:CDS 30.0%
GAATTCACATGATGCTAATA+CGG - chr7_3:79156482-79156501 None:intergenic 30.0%
GGTCAAAGATCATATGAATA+CGG - chr7_3:79156507-79156526 None:intergenic 30.0%
AAAAGAGAAGAGACCTAATT+CGG - chr7_3:79154914-79154933 None:intergenic 30.0%
GAAAGAAAAAAGGATTGAGA+TGG + chr7_3:79154999-79155018 Msa1127510:five_prime_UTR 30.0%
GAAATGGAATTTACCGAATT+GGG - chr7_3:79155216-79155235 None:intergenic 30.0%
TGAAATGGAATTTACCGAAT+TGG - chr7_3:79155217-79155236 None:intergenic 30.0%
!! AATGACATTGCTTTTCTTCT+AGG - chr7_3:79155344-79155363 None:intergenic 30.0%
CATTCAACTATCCATCAAAT+TGG + chr7_3:79155459-79155478 Msa1127510:CDS 30.0%
CTTACTTGAATCCAATTTGA+TGG - chr7_3:79155473-79155492 None:intergenic 30.0%
TCAAATTGGATTCAAGTAAG+AGG + chr7_3:79155473-79155492 Msa1127510:CDS 30.0%
! CAAATTGTACTATCAAGTTG+AGG + chr7_3:79155727-79155746 Msa1127510:CDS 30.0%
CAAAACTTACGGTAATTTGA+GGG + chr7_3:79155803-79155822 Msa1127510:intron 30.0%
AAAACTTACGGTAATTTGAG+GGG + chr7_3:79155804-79155823 Msa1127510:intron 30.0%
! TCTTCTTGAAACACATTTTC+TGG - chr7_3:79156078-79156097 None:intergenic 30.0%
AGAAAATGTGTTTCAAGAAG+AGG + chr7_3:79156077-79156096 Msa1127510:CDS 30.0%
GAATTCACATGATGCTAATA+CGG - chr7_3:79156482-79156501 None:intergenic 30.0%
GGTCAAAGATCATATGAATA+CGG - chr7_3:79156507-79156526 None:intergenic 30.0%
TGAAAGTGAAATGGTGACAT+GGG - chr7_3:79155165-79155184 None:intergenic 35.0%
ATGAAAGTGAAATGGTGACA+TGG - chr7_3:79155166-79155185 None:intergenic 35.0%
!!! TGGTGCTGATATTTTCTTCA+GGG + chr7_3:79155499-79155518 Msa1127510:CDS 35.0%
GTCTTGAATTTCGAAGAAGA+AGG - chr7_3:79155569-79155588 None:intergenic 35.0%
ATTCAAGACTGTTCAAGACT+TGG + chr7_3:79155580-79155599 Msa1127510:CDS 35.0%
TTCAAGACTGTTCAAGACTT+GGG + chr7_3:79155581-79155600 Msa1127510:CDS 35.0%
TTACTGAGTTTATGTCCACT+AGG + chr7_3:79155645-79155664 Msa1127510:CDS 35.0%
CTCTGTTCTTGCAAAACTTA+CGG + chr7_3:79155792-79155811 Msa1127510:intron 35.0%
GCAAAACTTACGGTAATTTG+AGG + chr7_3:79155802-79155821 Msa1127510:intron 35.0%
!!! TTTGAGGGGTGTCTTTTATA+TGG + chr7_3:79155818-79155837 Msa1127510:intron 35.0%
! GGGTGTCTTTTATATGGTAA+TGG + chr7_3:79155824-79155843 Msa1127510:intron 35.0%
GTAATCTCAACTCATACAGT+TGG - chr7_3:79156050-79156069 None:intergenic 35.0%
ACTGCTACCATCATTAACAA+CGG - chr7_3:79156245-79156264 None:intergenic 35.0%
TGTACAAATGCAGCAAAGTT+TGG + chr7_3:79156284-79156303 Msa1127510:three_prime_UTR 35.0%
CAAAACTGGTCAAGAATAGA+AGG - chr7_3:79156348-79156367 None:intergenic 35.0%
CTTGCAAGATTAATATGCGA+TGG + chr7_3:79156383-79156402 Msa1127510:three_prime_UTR 35.0%
TGAAAGTGAAATGGTGACAT+GGG - chr7_3:79155165-79155184 None:intergenic 35.0%
ATGAAAGTGAAATGGTGACA+TGG - chr7_3:79155166-79155185 None:intergenic 35.0%
!!! TGGTGCTGATATTTTCTTCA+GGG + chr7_3:79155499-79155518 Msa1127510:CDS 35.0%
GTCTTGAATTTCGAAGAAGA+AGG - chr7_3:79155569-79155588 None:intergenic 35.0%
ATTCAAGACTGTTCAAGACT+TGG + chr7_3:79155580-79155599 Msa1127510:CDS 35.0%
TTCAAGACTGTTCAAGACTT+GGG + chr7_3:79155581-79155600 Msa1127510:CDS 35.0%
TTACTGAGTTTATGTCCACT+AGG + chr7_3:79155645-79155664 Msa1127510:CDS 35.0%
CTCTGTTCTTGCAAAACTTA+CGG + chr7_3:79155792-79155811 Msa1127510:intron 35.0%
GCAAAACTTACGGTAATTTG+AGG + chr7_3:79155802-79155821 Msa1127510:intron 35.0%
!!! TTTGAGGGGTGTCTTTTATA+TGG + chr7_3:79155818-79155837 Msa1127510:intron 35.0%
! GGGTGTCTTTTATATGGTAA+TGG + chr7_3:79155824-79155843 Msa1127510:intron 35.0%
GTAATCTCAACTCATACAGT+TGG - chr7_3:79156050-79156069 None:intergenic 35.0%
ACTGCTACCATCATTAACAA+CGG - chr7_3:79156245-79156264 None:intergenic 35.0%
TGTACAAATGCAGCAAAGTT+TGG + chr7_3:79156284-79156303 Msa1127510:three_prime_UTR 35.0%
CAAAACTGGTCAAGAATAGA+AGG - chr7_3:79156348-79156367 None:intergenic 35.0%
CTTGCAAGATTAATATGCGA+TGG + chr7_3:79156383-79156402 Msa1127510:three_prime_UTR 35.0%
AGATGGAAAGAATCGCATTG+TGG + chr7_3:79155016-79155035 Msa1127510:five_prime_UTR 40.0%
ACTCACACAGCAAAAGCAAA+TGG - chr7_3:79155093-79155112 None:intergenic 40.0%
GAATTTACCGAATTGGGTGT+GGG - chr7_3:79155210-79155229 None:intergenic 40.0%
AGAGGAGAAAGCTCATGAAA+TGG - chr7_3:79155232-79155251 None:intergenic 40.0%
ACTTACATTCTCTCCGACAT+TGG + chr7_3:79155374-79155393 Msa1127510:CDS 40.0%
TGCTAATGCTGTACCAATGT+CGG - chr7_3:79155390-79155409 None:intergenic 40.0%
ACATATTCACGAAACACACG+AGG - chr7_3:79155419-79155438 None:intergenic 40.0%
!!! CTGGTGCTGATATTTTCTTC+AGG + chr7_3:79155498-79155517 Msa1127510:CDS 40.0%
!! TGTGTGTTGTTTGTGTTGCT+AGG + chr7_3:79155912-79155931 Msa1127510:intron 40.0%
! TTGCTGTTATGCCACAAGAT+AGG + chr7_3:79155968-79155987 Msa1127510:CDS 40.0%
TGCTGTTATGCCACAAGATA+GGG + chr7_3:79155969-79155988 Msa1127510:CDS 40.0%
TTTCAACTCCTAGAACAGAC+AGG - chr7_3:79156023-79156042 None:intergenic 40.0%
TCAACTGCCGTTGTTAATGA+TGG + chr7_3:79156235-79156254 Msa1127510:three_prime_UTR 40.0%
CAGCAAAGTTTGGATTGAGA+TGG + chr7_3:79156294-79156313 Msa1127510:three_prime_UTR 40.0%
CATATGATCTTTGACCCACT+TGG + chr7_3:79156511-79156530 Msa1127510:three_prime_UTR 40.0%
AGATGGAAAGAATCGCATTG+TGG + chr7_3:79155016-79155035 Msa1127510:five_prime_UTR 40.0%
ACTCACACAGCAAAAGCAAA+TGG - chr7_3:79155093-79155112 None:intergenic 40.0%
GAATTTACCGAATTGGGTGT+GGG - chr7_3:79155210-79155229 None:intergenic 40.0%
AGAGGAGAAAGCTCATGAAA+TGG - chr7_3:79155232-79155251 None:intergenic 40.0%
ACTTACATTCTCTCCGACAT+TGG + chr7_3:79155374-79155393 Msa1127510:CDS 40.0%
TGCTAATGCTGTACCAATGT+CGG - chr7_3:79155390-79155409 None:intergenic 40.0%
ACATATTCACGAAACACACG+AGG - chr7_3:79155419-79155438 None:intergenic 40.0%
!!! CTGGTGCTGATATTTTCTTC+AGG + chr7_3:79155498-79155517 Msa1127510:CDS 40.0%
!! TGTGTGTTGTTTGTGTTGCT+AGG + chr7_3:79155912-79155931 Msa1127510:intron 40.0%
! TTGCTGTTATGCCACAAGAT+AGG + chr7_3:79155968-79155987 Msa1127510:CDS 40.0%
TGCTGTTATGCCACAAGATA+GGG + chr7_3:79155969-79155988 Msa1127510:CDS 40.0%
TTTCAACTCCTAGAACAGAC+AGG - chr7_3:79156023-79156042 None:intergenic 40.0%
TCAACTGCCGTTGTTAATGA+TGG + chr7_3:79156235-79156254 Msa1127510:three_prime_UTR 40.0%
CAGCAAAGTTTGGATTGAGA+TGG + chr7_3:79156294-79156313 Msa1127510:three_prime_UTR 40.0%
CATATGATCTTTGACCCACT+TGG + chr7_3:79156511-79156530 Msa1127510:three_prime_UTR 40.0%
!! TTTTGCTGTGTGAGTCGCAT+CGG + chr7_3:79155098-79155117 Msa1127510:five_prime_UTR 45.0%
GGCCAGTACAATCACAACAA+CGG + chr7_3:79155125-79155144 Msa1127510:CDS 45.0%
GCCAGTACAATCACAACAAC+GGG + chr7_3:79155126-79155145 Msa1127510:CDS 45.0%
ACCCGTTGTTGTGATTGTAC+TGG - chr7_3:79155130-79155149 None:intergenic 45.0%
AGTGAAATGGTGACATGGGT+CGG - chr7_3:79155161-79155180 None:intergenic 45.0%
CGAGGGGAATGAAAGTGAAA+TGG - chr7_3:79155174-79155193 None:intergenic 45.0%
CATTTCTCCCACACCCAATT+CGG + chr7_3:79155200-79155219 Msa1127510:CDS 45.0%
GGAATTTACCGAATTGGGTG+TGG - chr7_3:79155211-79155230 None:intergenic 45.0%
! TGGATTCAAGTAAGAGGTGC+TGG + chr7_3:79155479-79155498 Msa1127510:CDS 45.0%
!! ACTTTCTTCCCAGCTTGTTG+AGG - chr7_3:79155611-79155630 None:intergenic 45.0%
GAGTTTATGTCCACTAGGCT+TGG + chr7_3:79155650-79155669 Msa1127510:CDS 45.0%
ACGTTTAACACCAAGCCTAG+TGG - chr7_3:79155663-79155682 None:intergenic 45.0%
ATCATCAGCAACTCTCTCAG+AGG - chr7_3:79155705-79155724 None:intergenic 45.0%
TCTGAGAGAGTTGCTGATGA+TGG + chr7_3:79155704-79155723 Msa1127510:CDS 45.0%
TGTTATGCCACAAGATAGGG+TGG + chr7_3:79155972-79155991 Msa1127510:CDS 45.0%
GAGTGAACTTCGTCAAGTCA+TGG + chr7_3:79156101-79156120 Msa1127510:CDS 45.0%
GGCTTCGTTTCGAGCAAATA+AGG + chr7_3:79156122-79156141 Msa1127510:CDS 45.0%
!! TTTTGCTGTGTGAGTCGCAT+CGG + chr7_3:79155098-79155117 Msa1127510:five_prime_UTR 45.0%
GGCCAGTACAATCACAACAA+CGG + chr7_3:79155125-79155144 Msa1127510:CDS 45.0%
GCCAGTACAATCACAACAAC+GGG + chr7_3:79155126-79155145 Msa1127510:CDS 45.0%
ACCCGTTGTTGTGATTGTAC+TGG - chr7_3:79155130-79155149 None:intergenic 45.0%
AGTGAAATGGTGACATGGGT+CGG - chr7_3:79155161-79155180 None:intergenic 45.0%
CGAGGGGAATGAAAGTGAAA+TGG - chr7_3:79155174-79155193 None:intergenic 45.0%
CATTTCTCCCACACCCAATT+CGG + chr7_3:79155200-79155219 Msa1127510:CDS 45.0%
GGAATTTACCGAATTGGGTG+TGG - chr7_3:79155211-79155230 None:intergenic 45.0%
! TGGATTCAAGTAAGAGGTGC+TGG + chr7_3:79155479-79155498 Msa1127510:CDS 45.0%
!! ACTTTCTTCCCAGCTTGTTG+AGG - chr7_3:79155611-79155630 None:intergenic 45.0%
GAGTTTATGTCCACTAGGCT+TGG + chr7_3:79155650-79155669 Msa1127510:CDS 45.0%
ACGTTTAACACCAAGCCTAG+TGG - chr7_3:79155663-79155682 None:intergenic 45.0%
ATCATCAGCAACTCTCTCAG+AGG - chr7_3:79155705-79155724 None:intergenic 45.0%
TCTGAGAGAGTTGCTGATGA+TGG + chr7_3:79155704-79155723 Msa1127510:CDS 45.0%
TGTTATGCCACAAGATAGGG+TGG + chr7_3:79155972-79155991 Msa1127510:CDS 45.0%
GAGTGAACTTCGTCAAGTCA+TGG + chr7_3:79156101-79156120 Msa1127510:CDS 45.0%
GGCTTCGTTTCGAGCAAATA+AGG + chr7_3:79156122-79156141 Msa1127510:CDS 45.0%
!!! TTTAAAATAAATATAAAAAG+GGG + chr7_3:79154961-79154980 Msa1127510:five_prime_UTR 5.0%
!!! TTTAAAATAAATATAAAAAG+GGG + chr7_3:79154961-79154980 Msa1127510:five_prime_UTR 5.0%
ATCGCATTGTGGTGTGCGAT+TGG + chr7_3:79155027-79155046 Msa1127510:five_prime_UTR 50.0%
GTGAAATGGTGACATGGGTC+GGG - chr7_3:79155160-79155179 None:intergenic 50.0%
CGAATTGGGTGTGGGAGAAA+TGG - chr7_3:79155202-79155221 None:intergenic 50.0%
ATCAGCAACTCTCTCAGAGG+TGG - chr7_3:79155702-79155721 None:intergenic 50.0%
AAACGCACCACCCTATCTTG+TGG - chr7_3:79155982-79156001 None:intergenic 50.0%
ACAAGATAGGGTGGTGCGTT+TGG + chr7_3:79155981-79156000 Msa1127510:CDS 50.0%
ATAGGGTGGTGCGTTTGGAA+TGG + chr7_3:79155986-79156005 Msa1127510:CDS 50.0%
! TAGGGTGGTGCGTTTGGAAT+GGG + chr7_3:79155987-79156006 Msa1127510:CDS 50.0%
! TGGTGCGTTTGGAATGGGAT+AGG + chr7_3:79155992-79156011 Msa1127510:CDS 50.0%
! TGCGTTTGGAATGGGATAGG+AGG + chr7_3:79155995-79156014 Msa1127510:CDS 50.0%
!! AGGAGGTACCTGTCTGTTCT+AGG + chr7_3:79156012-79156031 Msa1127510:CDS 50.0%
ATCGCATTGTGGTGTGCGAT+TGG + chr7_3:79155027-79155046 Msa1127510:five_prime_UTR 50.0%
GTGAAATGGTGACATGGGTC+GGG - chr7_3:79155160-79155179 None:intergenic 50.0%
CGAATTGGGTGTGGGAGAAA+TGG - chr7_3:79155202-79155221 None:intergenic 50.0%
ATCAGCAACTCTCTCAGAGG+TGG - chr7_3:79155702-79155721 None:intergenic 50.0%
AAACGCACCACCCTATCTTG+TGG - chr7_3:79155982-79156001 None:intergenic 50.0%
ACAAGATAGGGTGGTGCGTT+TGG + chr7_3:79155981-79156000 Msa1127510:CDS 50.0%
ATAGGGTGGTGCGTTTGGAA+TGG + chr7_3:79155986-79156005 Msa1127510:CDS 50.0%
! TAGGGTGGTGCGTTTGGAAT+GGG + chr7_3:79155987-79156006 Msa1127510:CDS 50.0%
! TGGTGCGTTTGGAATGGGAT+AGG + chr7_3:79155992-79156011 Msa1127510:CDS 50.0%
! TGCGTTTGGAATGGGATAGG+AGG + chr7_3:79155995-79156014 Msa1127510:CDS 50.0%
!! AGGAGGTACCTGTCTGTTCT+AGG + chr7_3:79156012-79156031 Msa1127510:CDS 50.0%
! TGTGTGAGTCGCATCGGCAA+TGG + chr7_3:79155104-79155123 Msa1127510:exon 55.0%
TGGGAGAAATGGAGCAGCGA+GGG - chr7_3:79155191-79155210 None:intergenic 55.0%
TTGGGTTCGCCTCAACAAGC+TGG + chr7_3:79155599-79155618 Msa1127510:CDS 55.0%
TGGGTTCGCCTCAACAAGCT+GGG + chr7_3:79155600-79155619 Msa1127510:CDS 55.0%
! TGTGTGAGTCGCATCGGCAA+TGG + chr7_3:79155104-79155123 Msa1127510:exon 55.0%
TGGGAGAAATGGAGCAGCGA+GGG - chr7_3:79155191-79155210 None:intergenic 55.0%
TTGGGTTCGCCTCAACAAGC+TGG + chr7_3:79155599-79155618 Msa1127510:CDS 55.0%
TGGGTTCGCCTCAACAAGCT+GGG + chr7_3:79155600-79155619 Msa1127510:CDS 55.0%
GGGAGAAATGGAGCAGCGAG+GGG - chr7_3:79155190-79155209 None:intergenic 60.0%
GTGGGAGAAATGGAGCAGCG+AGG - chr7_3:79155192-79155211 None:intergenic 60.0%
GGGAGAAATGGAGCAGCGAG+GGG - chr7_3:79155190-79155209 None:intergenic 60.0%
GTGGGAGAAATGGAGCAGCG+AGG - chr7_3:79155192-79155211 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 79154914 79156539 79154914 ID=Msa1127510;Name=Msa1127510
chr7_3 mRNA 79154914 79156539 79154914 ID=Msa1127510-mRNA-1;Parent=Msa1127510;Name=Msa1127510-mRNA-1;_AED=0.09;_eAED=0.09;_QI=209|1|1|1|1|1|3|384|249
chr7_3 exon 79154914 79155221 79154914 ID=Msa1127510-mRNA-1:exon:22304;Parent=Msa1127510-mRNA-1
chr7_3 exon 79155320 79155748 79155320 ID=Msa1127510-mRNA-1:exon:22305;Parent=Msa1127510-mRNA-1
chr7_3 exon 79155934 79156539 79155934 ID=Msa1127510-mRNA-1:exon:22306;Parent=Msa1127510-mRNA-1
chr7_3 five_prime_UTR 79154914 79155122 79154914 ID=Msa1127510-mRNA-1:five_prime_utr;Parent=Msa1127510-mRNA-1
chr7_3 CDS 79155123 79155221 79155123 ID=Msa1127510-mRNA-1:cds;Parent=Msa1127510-mRNA-1
chr7_3 CDS 79155320 79155748 79155320 ID=Msa1127510-mRNA-1:cds;Parent=Msa1127510-mRNA-1
chr7_3 CDS 79155934 79156155 79155934 ID=Msa1127510-mRNA-1:cds;Parent=Msa1127510-mRNA-1
chr7_3 three_prime_UTR 79156156 79156539 79156156 ID=Msa1127510-mRNA-1:three_prime_utr;Parent=Msa1127510-mRNA-1
Gene Sequence

>Msa1127510

ATGGCCAGTACAATCACAACAACGGGTTTTCTAGCCCGACCCATGTCACCATTTCACTTTCATTCCCCTCGCTGCTCCATTTCTCCCACACCCAATTCGATTAAAGCAGCTTTTGCAGTTCCTAGAAGAAAAGCAATGTCATTAATCTTATCAACTTACATTCTCTCCGACATTGGTACAGCATTAGCACAACAACCTCGTGTGTTTCGTGAATATGTTGATACATTTGATGGTTATTCATTCAACTATCCATCAAATTGGATTCAAGTAAGAGGTGCTGGTGCTGATATTTTCTTCAGGGATCCTTATATTCTTGATGAAAATATATCGGTCGAAGTTTCTTCGCCTTCTTCTTCGAAATTCAAGACTGTTCAAGACTTGGGTTCGCCTCAACAAGCTGGGAAGAAAGTTCTTGATCAGTATCTTACTGAGTTTATGTCCACTAGGCTTGGTGTTAAACGTGAATCTAATATTCTTTCCACCTCTGAGAGAGTTGCTGATGATGGCAAATTGTACTATCAAGTTGAGGCGAACATTAAGTCATATGCTAGTAACAACGAGCTTGCTGTTATGCCACAAGATAGGGTGGTGCGTTTGGAATGGGATAGGAGGTACCTGTCTGTTCTAGGAGTTGAAAACAACCAACTGTATGAGTTGAGATTACAAGTGCCAGAAAATGTGTTTCAAGAAGAGGAGAGTGAACTTCGTCAAGTCATGGCTTCGTTTCGAGCAAATAAGGTTGTTCGTTAG

Protein sequence

>Msa1127510

MASTITTTGFLARPMSPFHFHSPRCSISPTPNSIKAAFAVPRRKAMSLILSTYILSDIGTALAQQPRVFREYVDTFDGYSFNYPSNWIQVRGAGADIFFRDPYILDENISVEVSSPSSSKFKTVQDLGSPQQAGKKVLDQYLTEFMSTRLGVKRESNILSTSERVADDGKLYYQVEANIKSYASNNELAVMPQDRVVRLEWDRRYLSVLGVENNQLYELRLQVPENVFQEEESELRQVMASFRANKVVR*