Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257770 | XP_024638892.1 | 99.087 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 6.45e-161 | 453 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257770 | sp|O22152|YAB1_ARATH | 61.009 | 218 | 74 | 6 | 10 | 219 | 15 | 229 | 2.55e-81 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257770 | G7JK46 | 98.630 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 1.20e-158 | 446 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1257770 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641620 | Msa1257770 | 0.817323 | 3.500383e-52 | -8.615850e-47 |
| Msa0184070 | Msa1257770 | 0.841807 | 3.797466e-58 | -8.615850e-47 |
| Msa1257730 | Msa1257770 | 0.830637 | 2.625513e-55 | -8.615850e-47 |
| Msa1257770 | Msa1329170 | 0.893741 | 4.739210e-75 | -8.615850e-47 |
| Msa1257770 | Msa1450530 | 0.892529 | 1.459448e-74 | -8.615850e-47 |
| Msa1129920 | Msa1257770 | 0.837948 | 3.844264e-57 | -8.615850e-47 |
| Msa1207830 | Msa1257770 | 0.985383 | 2.141763e-163 | -8.615850e-47 |
| Msa0601110 | Msa1257770 | 0.828445 | 8.953321e-55 | -8.615850e-47 |
| Msa0601120 | Msa1257770 | 0.827813 | 1.271593e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257770 | MtrunA17_Chr4g0056521 | 98.630 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 2.31e-162 | 446 |
| Msa1257770 | MtrunA17_Chr4g0011841 | 70.792 | 202 | 52 | 5 | 20 | 219 | 25 | 221 | 4.00e-90 | 264 |
| Msa1257770 | MtrunA17_Chr2g0322221 | 49.510 | 204 | 91 | 6 | 8 | 209 | 2 | 195 | 1.52e-56 | 178 |
| Msa1257770 | MtrunA17_Chr4g0063931 | 53.333 | 180 | 64 | 5 | 7 | 182 | 2 | 165 | 3.88e-55 | 174 |
| Msa1257770 | MtrunA17_Chr4g0025361 | 49.010 | 202 | 77 | 7 | 9 | 209 | 1 | 177 | 8.81e-50 | 160 |
| Msa1257770 | MtrunA17_Chr5g0413381 | 49.686 | 159 | 71 | 4 | 18 | 175 | 12 | 162 | 7.19e-46 | 150 |
| Msa1257770 | MtrunA17_Chr5g0419871 | 41.317 | 167 | 79 | 3 | 9 | 174 | 7 | 155 | 4.97e-34 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1257770 | AT2G45190.1 | 61.009 | 218 | 74 | 6 | 10 | 219 | 15 | 229 | 2.60e-82 | 245 |
| Msa1257770 | AT4G00180.1 | 61.504 | 226 | 63 | 10 | 12 | 217 | 17 | 238 | 1.68e-73 | 223 |
| Msa1257770 | AT4G00180.2 | 60.190 | 211 | 60 | 10 | 27 | 217 | 1 | 207 | 3.55e-62 | 193 |
| Msa1257770 | AT2G26580.2 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.63e-56 | 177 |
| Msa1257770 | AT2G26580.1 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.63e-56 | 177 |
| Msa1257770 | AT1G08465.1 | 50.515 | 194 | 79 | 4 | 17 | 209 | 7 | 184 | 6.44e-55 | 174 |
| Msa1257770 | AT2G45190.2 | 57.143 | 168 | 61 | 6 | 60 | 219 | 1 | 165 | 3.73e-54 | 171 |
| Msa1257770 | AT1G23420.1 | 46.286 | 175 | 90 | 3 | 6 | 178 | 8 | 180 | 6.59e-39 | 134 |
| Msa1257770 | AT1G23420.2 | 46.286 | 175 | 90 | 3 | 6 | 178 | 39 | 211 | 3.60e-38 | 133 |
| Msa1257770 | AT1G69180.1 | 45.000 | 160 | 69 | 3 | 15 | 174 | 16 | 156 | 6.32e-34 | 120 |
Find 78 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGGTTCATCATAAAATT+TGG | 0.162315 | 8_2:-58642260 | None:intergenic |
| AATCATTTGGTGCATTTATA+TGG | 0.220470 | 8_2:-58642277 | None:intergenic |
| TTATCACTAGGTAGCTCTTT+TGG | 0.238958 | 8_2:+58644690 | Msa1257770:three_prime_UTR |
| ACCAGAAGGTTATGATGATT+TGG | 0.269243 | 8_2:-58642084 | None:intergenic |
| CCAGAAGGTTATGATGATTT+GGG | 0.306156 | 8_2:-58642083 | None:intergenic |
| TGTAGTACTAAGGAAATTAA+AGG | 0.315101 | 8_2:-58644765 | None:intergenic |
| TATATATTCGGTTTGATGAT+TGG | 0.328788 | 8_2:-58641701 | None:intergenic |
| ATAAAATTTGGAGCTGGGTT+TGG | 0.340235 | 8_2:-58642248 | None:intergenic |
| GCTTCCCTGTGGGTTATATC+AGG | 0.345088 | 8_2:-58643505 | None:intergenic |
| CCCAAATCATCATAACCTTC+TGG | 0.358123 | 8_2:+58642083 | Msa1257770:CDS |
| AGAGGACGACATTATATATT+CGG | 0.359434 | 8_2:-58641713 | None:intergenic |
| GTCTTCTTCATAGTCTGATC+AGG | 0.388325 | 8_2:-58644379 | None:intergenic |
| AAAAGGGTTCCGTGGCAATA+TGG | 0.396523 | 8_2:+58641472 | Msa1257770:five_prime_UTR |
| AGAGAGATTGATGCATTAGT+AGG | 0.399847 | 8_2:-58644623 | None:intergenic |
| CTGATTGATTGATAGATAGA+TGG | 0.429694 | 8_2:-58641666 | None:intergenic |
| CACTTCCCACACATTCACTT+TGG | 0.432093 | 8_2:+58644349 | Msa1257770:CDS |
| TTCCTTAGTACTACAGTAGC+TGG | 0.434594 | 8_2:+58644773 | Msa1257770:three_prime_UTR |
| TGTCCCAAATGAAACTGATT+GGG | 0.435332 | 8_2:-58642048 | None:intergenic |
| TTCAACCACAACATTATCCT+TGG | 0.449974 | 8_2:+58641735 | Msa1257770:CDS |
| TAAACAAAGAGAGAAAGAAA+AGG | 0.467919 | 8_2:+58641455 | Msa1257770:five_prime_UTR |
| GTGTCCCAAATGAAACTGAT+TGG | 0.468609 | 8_2:-58642049 | None:intergenic |
| AAAGGAGGATCATACATTCT+TGG | 0.469847 | 8_2:-58643542 | None:intergenic |
| AGTAATGCACGCATGTTGAC+TGG | 0.472196 | 8_2:-58642015 | None:intergenic |
| TTCATCATAAAATTTGGAGC+TGG | 0.473136 | 8_2:-58642254 | None:intergenic |
| TAATGTTATGTTGATAATCA+AGG | 0.477535 | 8_2:+58644658 | Msa1257770:three_prime_UTR |
| GGAGGCATAGAGAAATCATT+TGG | 0.480020 | 8_2:-58642290 | None:intergenic |
| TAATAAATACTAATAAACAT+AGG | 0.480258 | 8_2:-58641498 | None:intergenic |
| TCACGTCTGTTTATGATTGG+TGG | 0.480315 | 8_2:-58642344 | None:intergenic |
| TCATCATAAAATTTGGAGCT+GGG | 0.482099 | 8_2:-58642253 | None:intergenic |
| AAACAAAGAGAGAAAGAAAA+GGG | 0.485188 | 8_2:+58641456 | Msa1257770:five_prime_UTR |
| ATCTCACGTCTGTTTATGAT+TGG | 0.489279 | 8_2:-58642347 | None:intergenic |
| GATTATGTGTTGTGAAAGAA+AGG | 0.492989 | 8_2:-58641607 | None:intergenic |
| ATTCTTGGCAGCTGCGCTGA+AGG | 0.503305 | 8_2:-58643527 | None:intergenic |
| CAAAGTGAATGTGTGGGAAG+TGG | 0.524635 | 8_2:-58644348 | None:intergenic |
| CTGTTTATGATTGGTGGTCG+TGG | 0.531680 | 8_2:-58642338 | None:intergenic |
| AATAAATACTAATAAACATA+GGG | 0.531963 | 8_2:-58641497 | None:intergenic |
| AACCAGCTACTGTAGTACTA+AGG | 0.538374 | 8_2:-58644775 | None:intergenic |
| TGCGCTGAAGGCTTCCCTGT+GGG | 0.539083 | 8_2:-58643515 | None:intergenic |
| CAGATTCTGATGAAAGATGC+GGG | 0.541160 | 8_2:+58644568 | Msa1257770:CDS |
| AACAAAGTTGCTCGGAAGGA+GGG | 0.547749 | 8_2:-58641765 | None:intergenic |
| GGAAGGAGGGAGGTGGTCCA+AGG | 0.549892 | 8_2:-58641752 | None:intergenic |
| GAAGACAAATGTGTGCCAGC+AGG | 0.553012 | 8_2:+58644396 | Msa1257770:CDS |
| CTGCGCTGAAGGCTTCCCTG+TGG | 0.555021 | 8_2:-58643516 | None:intergenic |
| GATGTTTCATACAGCAAGGA+TGG | 0.571365 | 8_2:-58641812 | None:intergenic |
| GAACTTGTAACTAGAAAGCA+AGG | 0.573026 | 8_2:-58644821 | None:intergenic |
| GGATAATGTTGTGGTTGAAG+AGG | 0.579637 | 8_2:-58641731 | None:intergenic |
| GTCTTGAACAAGCTTGTGCA+AGG | 0.580384 | 8_2:-58641955 | None:intergenic |
| TAACAAAGTTGCTCGGAAGG+AGG | 0.582448 | 8_2:-58641766 | None:intergenic |
| GTTGCTCGGAAGGAGGGAGG+TGG | 0.583306 | 8_2:-58641759 | None:intergenic |
| GATTGACAGACTTAATGCGT+TGG | 0.585391 | 8_2:-58643483 | None:intergenic |
| ACATAACAAAGTTGCTCGGA+AGG | 0.586092 | 8_2:-58641769 | None:intergenic |
| GAGAGATTGATGCATTAGTA+GGG | 0.586283 | 8_2:-58644622 | None:intergenic |
| AAAGTGAATGTGTGGGAAGT+GGG | 0.594462 | 8_2:-58644347 | None:intergenic |
| CTCATCAGCTACAGTCCTAG+TGG | 0.598065 | 8_2:-58642312 | None:intergenic |
| AGCAAGGATGGTGTCACAGA+TGG | 0.603099 | 8_2:-58641800 | None:intergenic |
| TCAATCCTGATATAACCCAC+AGG | 0.603889 | 8_2:+58643500 | Msa1257770:CDS |
| TCATCAGCTACAGTCCTAGT+GGG | 0.606377 | 8_2:-58642311 | None:intergenic |
| ATTTCTCTATGCCTCCCACT+AGG | 0.608537 | 8_2:+58642297 | Msa1257770:CDS |
| ACAAGTTAACCACCACACCT+TGG | 0.608577 | 8_2:-58641643 | None:intergenic |
| AAAGCATATCCAAGGTGTGG+TGG | 0.610066 | 8_2:+58641634 | Msa1257770:five_prime_UTR |
| TCAGATTCTGATGAAAGATG+CGG | 0.615278 | 8_2:+58644567 | Msa1257770:CDS |
| CAGAAGGTTATGATGATTTG+GGG | 0.623732 | 8_2:-58642082 | None:intergenic |
| GTGGACATAACAAAGTTGCT+CGG | 0.624197 | 8_2:-58641773 | None:intergenic |
| AGAGAAAGAAAAGGGTTCCG+TGG | 0.624758 | 8_2:+58641464 | Msa1257770:five_prime_UTR |
| ATGAGACCAAAGTGAATGTG+TGG | 0.636661 | 8_2:-58644355 | None:intergenic |
| GTCCCAAATGAAACTGATTG+GGG | 0.640416 | 8_2:-58642047 | None:intergenic |
| CAATCCTGATATAACCCACA+GGG | 0.644329 | 8_2:+58643501 | Msa1257770:CDS |
| AGGACTACTACATTATCACT+AGG | 0.658383 | 8_2:+58644678 | Msa1257770:three_prime_UTR |
| AAAGTTGCTCGGAAGGAGGG+AGG | 0.666622 | 8_2:-58641762 | None:intergenic |
| CATAGGGAACCATATTGCCA+CGG | 0.673341 | 8_2:-58641481 | None:intergenic |
| ATGAAGCGATTGTATGCTGA+GGG | 0.673566 | 8_2:-58643314 | None:intergenic |
| TCAGCTACAGTCCTAGTGGG+AGG | 0.678197 | 8_2:-58642308 | None:intergenic |
| TGGTGTCACAGATGGTGCAG+TGG | 0.683501 | 8_2:-58641792 | None:intergenic |
| AAGACTGTTACTGTGAGATG+CGG | 0.688688 | 8_2:+58641973 | Msa1257770:CDS |
| TGAGACCAAAGTGAATGTGT+GGG | 0.708380 | 8_2:-58644354 | None:intergenic |
| GTGGTCCAAGGATAATGTTG+TGG | 0.713676 | 8_2:-58641740 | None:intergenic |
| GATGAAGCGATTGTATGCTG+AGG | 0.735800 | 8_2:-58643315 | None:intergenic |
| TCCCAAATGAAACTGATTGG+GGG | 0.774348 | 8_2:-58642046 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAAAATA+TGG | + | chr8_2:58644020-58644039 | Msa1257770:intron | 0.0% |
| !! | AATAAATACTAATAAACATA+GGG | - | chr8_2:58641500-58641519 | None:intergenic | 10.0% |
| !! | TAATAAATACTAATAAACAT+AGG | - | chr8_2:58641501-58641520 | None:intergenic | 10.0% |
| !! | AGTTCAAATTAATAAATTAT+GGG | + | chr8_2:58642498-58642517 | Msa1257770:intron | 10.0% |
| !! | AAAAAAATATTTACTTTATG+TGG | + | chr8_2:58642600-58642619 | Msa1257770:intron | 10.0% |
| !!! | GAAATTATTTATTGATTTTA+GGG | + | chr8_2:58642857-58642876 | Msa1257770:intron | 10.0% |
| !! | TATATATTATATATGTAAGA+TGG | + | chr8_2:58643007-58643026 | Msa1257770:intron | 10.0% |
| !! | ATATATTATATATGTAAGAT+GGG | + | chr8_2:58643008-58643027 | Msa1257770:intron | 10.0% |
| !! | ATTCATTTATTTATAAGTTA+AGG | - | chr8_2:58643571-58643590 | None:intergenic | 10.0% |
| !!! | ATATTGATTAAATAAAGTTA+AGG | + | chr8_2:58643879-58643898 | Msa1257770:intron | 10.0% |
| !! | TGTAAATATCTATAAAAAAA+AGG | + | chr8_2:58644172-58644191 | Msa1257770:intron | 10.0% |
| !! | GTTATATTTGCATAAAAAAA+TGG | - | chr8_2:58641898-58641917 | None:intergenic | 15.0% |
| !! | CTGAAAAAAAAAAAAAATGA+AGG | - | chr8_2:58641926-58641945 | None:intergenic | 15.0% |
| !!! | CTTCATTTTTTTTTTTTTTC+AGG | + | chr8_2:58641924-58641943 | Msa1257770:intron | 15.0% |
| !! | TTAATGTATGGTATATAAAA+TGG | - | chr8_2:58642149-58642168 | None:intergenic | 15.0% |
| !! | GAGTTCAAATTAATAAATTA+TGG | + | chr8_2:58642497-58642516 | Msa1257770:intron | 15.0% |
| !!! | GGAAATTATTTATTGATTTT+AGG | + | chr8_2:58642856-58642875 | Msa1257770:intron | 15.0% |
| !! | TATATTATATATGTAAGATG+GGG | + | chr8_2:58643009-58643028 | Msa1257770:intron | 15.0% |
| !! | AACAGATTAATTAAATTGAA+AGG | + | chr8_2:58643184-58643203 | Msa1257770:intron | 15.0% |
| !!! | GATTTTGATATATATGATAA+CGG | + | chr8_2:58643253-58643272 | Msa1257770:intron | 15.0% |
| !!! | GTTAAAAAAAAAAAGTACAA+TGG | - | chr8_2:58643361-58643380 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTAAGGAGAAA+AGG | + | chr8_2:58643790-58643809 | Msa1257770:intron | 15.0% |
| !! | CATAAAATTAATCAAGATTA+AGG | - | chr8_2:58643985-58644004 | None:intergenic | 15.0% |
| !!! | TAGATATTTACATGTTTTAT+AGG | - | chr8_2:58644164-58644183 | None:intergenic | 15.0% |
| !! | AATTAAGAGTAAAAAAGAAG+AGG | - | chr8_2:58642125-58642144 | None:intergenic | 20.0% |
| !! | ATATGGTTCATCATAAAATT+TGG | - | chr8_2:58642263-58642282 | None:intergenic | 20.0% |
| !!! | TGATCTTCTAAAATATTGTT+CGG | + | chr8_2:58642449-58642468 | Msa1257770:intron | 20.0% |
| !!! | TAGAGACATTATATCTTTTA+GGG | - | chr8_2:58642758-58642777 | None:intergenic | 20.0% |
| !!! | ATAGAGACATTATATCTTTT+AGG | - | chr8_2:58642759-58642778 | None:intergenic | 20.0% |
| !! | TTCTATGATAAGCTAAATTA+AGG | - | chr8_2:58642822-58642841 | None:intergenic | 20.0% |
| !! | AATAATACCTCATGAAAAAA+AGG | + | chr8_2:58643160-58643179 | Msa1257770:intron | 20.0% |
| !!! | CTGTTATATTTTCATATAGT+TGG | - | chr8_2:58643228-58643247 | None:intergenic | 20.0% |
| !! | CAACTATATGAAAATATAAC+AGG | + | chr8_2:58643226-58643245 | Msa1257770:intron | 20.0% |
| !! | ATGTGAAGTAAATCTAAATA+CGG | + | chr8_2:58643440-58643459 | Msa1257770:intron | 20.0% |
| !! | ATTTATAAGTTAAGGAGAAA+AGG | - | chr8_2:58643563-58643582 | None:intergenic | 20.0% |
| !! | TAAAATTAATAACCCTAACT+TGG | + | chr8_2:58643624-58643643 | Msa1257770:intron | 20.0% |
| !! | AAAATTAATAACCCTAACTT+GGG | + | chr8_2:58643625-58643644 | Msa1257770:intron | 20.0% |
| !!! | CCTTAATTTTTTTTTTTGAG+AGG | - | chr8_2:58643785-58643804 | None:intergenic | 20.0% |
| !! | CCTCTCAAAAAAAAAAATTA+AGG | + | chr8_2:58643782-58643801 | Msa1257770:intron | 20.0% |
| !! | TAAATAAAGTTAAGGAGAAA+AGG | + | chr8_2:58643887-58643906 | Msa1257770:intron | 20.0% |
| !! | TAATCAAGATTAAGGATAAA+AGG | - | chr8_2:58643977-58643996 | None:intergenic | 20.0% |
| !!! | AATCATGGACTAAAAAAAAT+TGG | - | chr8_2:58644223-58644242 | None:intergenic | 20.0% |
| !! | ACAATTCAAAATGAATGATA+TGG | + | chr8_2:58644264-58644283 | Msa1257770:intron | 20.0% |
| !!! | TAATGTTATGTTGATAATCA+AGG | + | chr8_2:58644658-58644677 | Msa1257770:three_prime_UTR | 20.0% |
| ! | TAAACAAAGAGAGAAAGAAA+AGG | + | chr8_2:58641455-58641474 | Msa1257770:five_prime_UTR | 25.0% |
| ! | AAACAAAGAGAGAAAGAAAA+GGG | + | chr8_2:58641456-58641475 | Msa1257770:five_prime_UTR | 25.0% |
| !! | AATCAAAAAAAGCATATCCA+AGG | + | chr8_2:58641626-58641645 | Msa1257770:five_prime_UTR | 25.0% |
| !! | TATATATTCGGTTTGATGAT+TGG | - | chr8_2:58641704-58641723 | None:intergenic | 25.0% |
| ! | GTTGCAAAGTAATTAATGTA+TGG | - | chr8_2:58642161-58642180 | None:intergenic | 25.0% |
| !!! | AATCATTTGGTGCATTTATA+TGG | - | chr8_2:58642280-58642299 | None:intergenic | 25.0% |
| !! | TTACTTTGTTTGAGTAACTT+AGG | + | chr8_2:58642383-58642402 | Msa1257770:intron | 25.0% |
| ! | TTAAAGTAAGGAATGGTTTA+AGG | - | chr8_2:58642725-58642744 | None:intergenic | 25.0% |
| !! | TGTCCTTTTTGTTAATTTCT+CGG | + | chr8_2:58642919-58642938 | Msa1257770:intron | 25.0% |
| ! | TAAGTATCAACTGAATCATA+AGG | + | chr8_2:58643117-58643136 | Msa1257770:intron | 25.0% |
| !!! | CAAATTTTAGTTCAAGTTGA+TGG | + | chr8_2:58643695-58643714 | Msa1257770:intron | 25.0% |
| !! | ATTAAGGATAAAAGGTACAA+TGG | - | chr8_2:58643969-58643988 | None:intergenic | 25.0% |
| !!! | AATCAATTTTTTTTTCTCCG+AGG | + | chr8_2:58644061-58644080 | Msa1257770:intron | 25.0% |
| !! | GACATTTTTCACAAAGAAAA+AGG | + | chr8_2:58644125-58644144 | Msa1257770:intron | 25.0% |
| !! | CATTTTGAATTGTTGAAACA+GGG | - | chr8_2:58644257-58644276 | None:intergenic | 25.0% |
| !! | TCATTTTGAATTGTTGAAAC+AGG | - | chr8_2:58644258-58644277 | None:intergenic | 25.0% |
| !!! | TATGGTTTTCTAGTTCATTT+TGG | + | chr8_2:58644282-58644301 | Msa1257770:intron | 25.0% |
| ! | AAAGTATGTCACATATCAAA+AGG | - | chr8_2:58644312-58644331 | None:intergenic | 25.0% |
| ! | CAGAAATGAAAAAAAGTCAT+GGG | - | chr8_2:58644499-58644518 | None:intergenic | 25.0% |
| ! | TCAGAAATGAAAAAAAGTCA+TGG | - | chr8_2:58644500-58644519 | None:intergenic | 25.0% |
| ! | TGTAGTACTAAGGAAATTAA+AGG | - | chr8_2:58644768-58644787 | None:intergenic | 25.0% |
| GATTATGTGTTGTGAAAGAA+AGG | - | chr8_2:58641610-58641629 | None:intergenic | 30.0% | |
| CTGATTGATTGATAGATAGA+TGG | - | chr8_2:58641669-58641688 | None:intergenic | 30.0% | |
| AGAGGACGACATTATATATT+CGG | - | chr8_2:58641716-58641735 | None:intergenic | 30.0% | |
| ! | AAATTGAGAGTATAACCAGA+AGG | - | chr8_2:58642101-58642120 | None:intergenic | 30.0% |
| ! | TCTAAGTAGTATAGCTTTTG+TGG | + | chr8_2:58642186-58642205 | Msa1257770:intron | 30.0% |
| !!! | CATTTTTTTTTTCTTGCAGC+AGG | + | chr8_2:58642217-58642236 | Msa1257770:intron | 30.0% |
| ! | TCATCATAAAATTTGGAGCT+GGG | - | chr8_2:58642256-58642275 | None:intergenic | 30.0% |
| ! | TTCATCATAAAATTTGGAGC+TGG | - | chr8_2:58642257-58642276 | None:intergenic | 30.0% |
| !!! | AAAACCATCGTTTTGATTGA+GGG | - | chr8_2:58642412-58642431 | None:intergenic | 30.0% |
| !!! | AAAAACCATCGTTTTGATTG+AGG | - | chr8_2:58642413-58642432 | None:intergenic | 30.0% |
| !! | CTTCTAAAATATTGTTCGGT+TGG | + | chr8_2:58642453-58642472 | Msa1257770:intron | 30.0% |
| ! | TTTATGTGGTTGCTATTGAT+TGG | + | chr8_2:58642614-58642633 | Msa1257770:intron | 30.0% |
| ! | TTCCACTTTCTTTTGGTAAA+AGG | + | chr8_2:58642666-58642685 | Msa1257770:intron | 30.0% |
| ! | TTCCTTTTACCAAAAGAAAG+TGG | - | chr8_2:58642671-58642690 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTGGTAAAAGGA+AGG | + | chr8_2:58642670-58642689 | Msa1257770:intron | 30.0% |
| ! | AAAAGGAAGGAAGTCTTTTA+TGG | + | chr8_2:58642683-58642702 | Msa1257770:intron | 30.0% |
| ATGTCTCTATAAGTAATGAC+AGG | + | chr8_2:58642769-58642788 | Msa1257770:intron | 30.0% | |
| CATAGAACAGTTTGTAATAC+TGG | + | chr8_2:58642835-58642854 | Msa1257770:intron | 30.0% | |
| GTACCGAGAAATTAACAAAA+AGG | - | chr8_2:58642925-58642944 | None:intergenic | 30.0% | |
| ATAGAGATGAAAGCAAACTT+AGG | + | chr8_2:58642957-58642976 | Msa1257770:intron | 30.0% | |
| ! | TGGTGGATAGAAAAAAGATA+GGG | + | chr8_2:58643040-58643059 | Msa1257770:intron | 30.0% |
| TTTAAACAACTACTATTCCG+GGG | - | chr8_2:58643079-58643098 | None:intergenic | 30.0% | |
| CTTTAAACAACTACTATTCC+GGG | - | chr8_2:58643080-58643099 | None:intergenic | 30.0% | |
| ! | GCTTTAAACAACTACTATTC+CGG | - | chr8_2:58643081-58643100 | None:intergenic | 30.0% |
| !!! | TCTGTTACCTTTTTTTCATG+AGG | - | chr8_2:58643170-58643189 | None:intergenic | 30.0% |
| TATAAGTTAAGGAGAAAAGG+AGG | - | chr8_2:58643560-58643579 | None:intergenic | 30.0% | |
| !! | AACATTTTTCAGCGAGAATA+GGG | - | chr8_2:58644446-58644465 | None:intergenic | 30.0% |
| !! | AAACATTTTTCAGCGAGAAT+AGG | - | chr8_2:58644447-58644466 | None:intergenic | 30.0% |
| ! | TTTTATGCTTCAGCAAATCT+TGG | + | chr8_2:58644592-58644611 | Msa1257770:CDS | 30.0% |
| ! | AAAAAAGCATATCCAAGGTG+TGG | + | chr8_2:58641631-58641650 | Msa1257770:five_prime_UTR | 35.0% |
| TTCAACCACAACATTATCCT+TGG | + | chr8_2:58641735-58641754 | Msa1257770:CDS | 35.0% | |
| TAGTGATGTTTCATACAGCA+AGG | - | chr8_2:58641819-58641838 | None:intergenic | 35.0% | |
| ! | TAAGCTAGTGTTGAAAAGTG+GGG | - | chr8_2:58641858-58641877 | None:intergenic | 35.0% |
| ! | CTAAGCTAGTGTTGAAAAGT+GGG | - | chr8_2:58641859-58641878 | None:intergenic | 35.0% |
| !! | TTTTCAACACTAGCTTAGCT+AGG | + | chr8_2:58641861-58641880 | Msa1257770:intron | 35.0% |
| ! | TTTCAACACTAGCTTAGCTA+GGG | + | chr8_2:58641862-58641881 | Msa1257770:intron | 35.0% |
| TGTCCCAAATGAAACTGATT+GGG | - | chr8_2:58642051-58642070 | None:intergenic | 35.0% | |
| CAGAAGGTTATGATGATTTG+GGG | - | chr8_2:58642085-58642104 | None:intergenic | 35.0% | |
| CCAGAAGGTTATGATGATTT+GGG | - | chr8_2:58642086-58642105 | None:intergenic | 35.0% | |
| ACCAGAAGGTTATGATGATT+TGG | - | chr8_2:58642087-58642106 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTCTTGCAGCAGG+AGG | + | chr8_2:58642220-58642239 | Msa1257770:intron | 35.0% |
| ! | ATAAAATTTGGAGCTGGGTT+TGG | - | chr8_2:58642251-58642270 | None:intergenic | 35.0% |
| ATCTCACGTCTGTTTATGAT+TGG | - | chr8_2:58642350-58642369 | None:intergenic | 35.0% | |
| !! | GCACACTTTAAAGTAAGGAA+TGG | - | chr8_2:58642732-58642751 | None:intergenic | 35.0% |
| TTGCTTTCATCTCTATATGC+TGG | - | chr8_2:58642953-58642972 | None:intergenic | 35.0% | |
| TGTAAGATGGGGAAAATATG+TGG | + | chr8_2:58643020-58643039 | Msa1257770:intron | 35.0% | |
| !! | GTGGTGGATAGAAAAAAGAT+AGG | + | chr8_2:58643039-58643058 | Msa1257770:intron | 35.0% |
| TTAAACAACTACTATTCCGG+GGG | - | chr8_2:58643078-58643097 | None:intergenic | 35.0% | |
| AAAGGAGGATCATACATTCT+TGG | - | chr8_2:58643545-58643564 | None:intergenic | 35.0% | |
| ! | GGGTTCAAGATCTGAATTTT+CGG | + | chr8_2:58643645-58643664 | Msa1257770:intron | 35.0% |
| TGCTATGATAATTTACCTGC+TGG | - | chr8_2:58644414-58644433 | None:intergenic | 35.0% | |
| !! | ACATTTTTCAGCGAGAATAG+GGG | - | chr8_2:58644445-58644464 | None:intergenic | 35.0% |
| TGCATCATTCTTTCTTATCC+AGG | + | chr8_2:58644534-58644553 | Msa1257770:intron | 35.0% | |
| TCATTCTTTCTTATCCAGGA+AGG | + | chr8_2:58644538-58644557 | Msa1257770:intron | 35.0% | |
| TCAGATTCTGATGAAAGATG+CGG | + | chr8_2:58644567-58644586 | Msa1257770:CDS | 35.0% | |
| GAGAGATTGATGCATTAGTA+GGG | - | chr8_2:58644625-58644644 | None:intergenic | 35.0% | |
| AGAGAGATTGATGCATTAGT+AGG | - | chr8_2:58644626-58644645 | None:intergenic | 35.0% | |
| AGGACTACTACATTATCACT+AGG | + | chr8_2:58644678-58644697 | Msa1257770:three_prime_UTR | 35.0% | |
| ! | TTATCACTAGGTAGCTCTTT+TGG | + | chr8_2:58644690-58644709 | Msa1257770:three_prime_UTR | 35.0% |
| ! | TATCACTAGGTAGCTCTTTT+GGG | + | chr8_2:58644691-58644710 | Msa1257770:three_prime_UTR | 35.0% |
| GGATAATGTTGTGGTTGAAG+AGG | - | chr8_2:58641734-58641753 | None:intergenic | 40.0% | |
| ACATAACAAAGTTGCTCGGA+AGG | - | chr8_2:58641772-58641791 | None:intergenic | 40.0% | |
| GTGGACATAACAAAGTTGCT+CGG | - | chr8_2:58641776-58641795 | None:intergenic | 40.0% | |
| GATGTTTCATACAGCAAGGA+TGG | - | chr8_2:58641815-58641834 | None:intergenic | 40.0% | |
| ! | GCTAAGCTAGTGTTGAAAAG+TGG | - | chr8_2:58641860-58641879 | None:intergenic | 40.0% |
| AAGACTGTTACTGTGAGATG+CGG | + | chr8_2:58641973-58641992 | Msa1257770:CDS | 40.0% | |
| AAATGAAACTGATTGGGGGA+TGG | - | chr8_2:58642045-58642064 | None:intergenic | 40.0% | |
| ATCCCCCAATCAGTTTCATT+TGG | + | chr8_2:58642044-58642063 | Msa1257770:CDS | 40.0% | |
| TCCCCCAATCAGTTTCATTT+GGG | + | chr8_2:58642045-58642064 | Msa1257770:CDS | 40.0% | |
| TCCCAAATGAAACTGATTGG+GGG | - | chr8_2:58642049-58642068 | None:intergenic | 40.0% | |
| GTCCCAAATGAAACTGATTG+GGG | - | chr8_2:58642050-58642069 | None:intergenic | 40.0% | |
| GTGTCCCAAATGAAACTGAT+TGG | - | chr8_2:58642052-58642071 | None:intergenic | 40.0% | |
| CCCAAATCATCATAACCTTC+TGG | + | chr8_2:58642083-58642102 | Msa1257770:CDS | 40.0% | |
| ! | GGAGGCATAGAGAAATCATT+TGG | - | chr8_2:58642293-58642312 | None:intergenic | 40.0% |
| TCACGTCTGTTTATGATTGG+TGG | - | chr8_2:58642347-58642366 | None:intergenic | 40.0% | |
| GTTTCCCTCAATCAAAACGA+TGG | + | chr8_2:58642405-58642424 | Msa1257770:intron | 40.0% | |
| ! | TTGATTGGACAGTGTTGTTG+AGG | + | chr8_2:58642629-58642648 | Msa1257770:intron | 40.0% |
| AGAAAGTGGAACAAGACCAA+GGG | - | chr8_2:58642657-58642676 | None:intergenic | 40.0% | |
| AAGAAAGTGGAACAAGACCA+AGG | - | chr8_2:58642658-58642677 | None:intergenic | 40.0% | |
| !!! | GGTCTTGTTCCACTTTCTTT+TGG | + | chr8_2:58642659-58642678 | Msa1257770:intron | 40.0% |
| !! | GGCATGCACACTTTAAAGTA+AGG | - | chr8_2:58642737-58642756 | None:intergenic | 40.0% |
| AAACAAAGCCTCGTGAAGAA+GGG | - | chr8_2:58642888-58642907 | None:intergenic | 40.0% | |
| AAAACAAAGCCTCGTGAAGA+AGG | - | chr8_2:58642889-58642908 | None:intergenic | 40.0% | |
| AAGATGGGGAAAATATGTGG+TGG | + | chr8_2:58643023-58643042 | Msa1257770:intron | 40.0% | |
| ATGAAGCGATTGTATGCTGA+GGG | - | chr8_2:58643317-58643336 | None:intergenic | 40.0% | |
| GATTGACAGACTTAATGCGT+TGG | - | chr8_2:58643486-58643505 | None:intergenic | 40.0% | |
| TCAATCCTGATATAACCCAC+AGG | + | chr8_2:58643500-58643519 | Msa1257770:CDS | 40.0% | |
| CAATCCTGATATAACCCACA+GGG | + | chr8_2:58643501-58643520 | Msa1257770:CDS | 40.0% | |
| CAGATCTTGAACCCAAGTTA+GGG | - | chr8_2:58643639-58643658 | None:intergenic | 40.0% | |
| TCAGATCTTGAACCCAAGTT+AGG | - | chr8_2:58643640-58643659 | None:intergenic | 40.0% | |
| !! | TTCAAGTTGATGGTTCTCCT+CGG | + | chr8_2:58643705-58643724 | Msa1257770:intron | 40.0% |
| AAGGAGAAAAGGATGCTCTT+TGG | + | chr8_2:58643801-58643820 | Msa1257770:intron | 40.0% | |
| TGAATTGTTGAAACAGGGCA+GGG | - | chr8_2:58644252-58644271 | None:intergenic | 40.0% | |
| TTGAATTGTTGAAACAGGGC+AGG | - | chr8_2:58644253-58644272 | None:intergenic | 40.0% | |
| ACATACTTTCTGTGTGACAG+TGG | + | chr8_2:58644323-58644342 | Msa1257770:intron | 40.0% | |
| CATACTTTCTGTGTGACAGT+GGG | + | chr8_2:58644324-58644343 | Msa1257770:intron | 40.0% | |
| AAAGTGAATGTGTGGGAAGT+GGG | - | chr8_2:58644350-58644369 | None:intergenic | 40.0% | |
| TGAGACCAAAGTGAATGTGT+GGG | - | chr8_2:58644357-58644376 | None:intergenic | 40.0% | |
| ATGAGACCAAAGTGAATGTG+TGG | - | chr8_2:58644358-58644377 | None:intergenic | 40.0% | |
| GTCTTCTTCATAGTCTGATC+AGG | - | chr8_2:58644382-58644401 | None:intergenic | 40.0% | |
| CAGATTCTGATGAAAGATGC+GGG | + | chr8_2:58644568-58644587 | Msa1257770:CDS | 40.0% | |
| TTCCTTAGTACTACAGTAGC+TGG | + | chr8_2:58644773-58644792 | Msa1257770:three_prime_UTR | 40.0% | |
| AACCAGCTACTGTAGTACTA+AGG | - | chr8_2:58644778-58644797 | None:intergenic | 40.0% | |
| AGAGAAAGAAAAGGGTTCCG+TGG | + | chr8_2:58641464-58641483 | Msa1257770:five_prime_UTR | 45.0% | |
| AAAAGGGTTCCGTGGCAATA+TGG | + | chr8_2:58641472-58641491 | Msa1257770:five_prime_UTR | 45.0% | |
| CATAGGGAACCATATTGCCA+CGG | - | chr8_2:58641484-58641503 | None:intergenic | 45.0% | |
| AAAGCATATCCAAGGTGTGG+TGG | + | chr8_2:58641634-58641653 | Msa1257770:five_prime_UTR | 45.0% | |
| ACAAGTTAACCACCACACCT+TGG | - | chr8_2:58641646-58641665 | None:intergenic | 45.0% | |
| GTGGTCCAAGGATAATGTTG+TGG | - | chr8_2:58641743-58641762 | None:intergenic | 45.0% | |
| AACAAAGTTGCTCGGAAGGA+GGG | - | chr8_2:58641768-58641787 | None:intergenic | 45.0% | |
| TAACAAAGTTGCTCGGAAGG+AGG | - | chr8_2:58641769-58641788 | None:intergenic | 45.0% | |
| ! | CTAGTGTTGAAAAGTGGGGA+TGG | - | chr8_2:58641854-58641873 | None:intergenic | 45.0% |
| GTCTTGAACAAGCTTGTGCA+AGG | - | chr8_2:58641958-58641977 | None:intergenic | 45.0% | |
| AGTAATGCACGCATGTTGAC+TGG | - | chr8_2:58642018-58642037 | None:intergenic | 45.0% | |
| ATTTCTCTATGCCTCCCACT+AGG | + | chr8_2:58642297-58642316 | Msa1257770:CDS | 45.0% | |
| TCATCAGCTACAGTCCTAGT+GGG | - | chr8_2:58642314-58642333 | None:intergenic | 45.0% | |
| ! | CTGTTTATGATTGGTGGTCG+TGG | - | chr8_2:58642341-58642360 | None:intergenic | 45.0% |
| ! | GGAACTCTCTGTCTTTTCTC+TGG | - | chr8_2:58643296-58643315 | None:intergenic | 45.0% |
| GATGAAGCGATTGTATGCTG+AGG | - | chr8_2:58643318-58643337 | None:intergenic | 45.0% | |
| TCTAAATACGGTCCATCTGC+AGG | + | chr8_2:58643452-58643471 | Msa1257770:intron | 45.0% | |
| CTAAATACGGTCCATCTGCA+GGG | + | chr8_2:58643453-58643472 | Msa1257770:intron | 45.0% | |
| TTCTCCGAGGTTTGCATACT+CGG | + | chr8_2:58644074-58644093 | Msa1257770:intron | 45.0% | |
| TAAGCCGAGTATGCAAACCT+CGG | - | chr8_2:58644081-58644100 | None:intergenic | 45.0% | |
| AGGGCAGGGAAATACAATCA+TGG | - | chr8_2:58644238-58644257 | None:intergenic | 45.0% | |
| CAAAGTGAATGTGTGGGAAG+TGG | - | chr8_2:58644351-58644370 | None:intergenic | 45.0% | |
| CACTTCCCACACATTCACTT+TGG | + | chr8_2:58644349-58644368 | Msa1257770:CDS | 45.0% | |
| GAATCTGATCATCTCCTTCC+TGG | - | chr8_2:58644555-58644574 | None:intergenic | 45.0% | |
| !! | AGCAAGGATGGTGTCACAGA+TGG | - | chr8_2:58641803-58641822 | None:intergenic | 50.0% |
| CTCATCAGCTACAGTCCTAG+TGG | - | chr8_2:58642315-58642334 | None:intergenic | 50.0% | |
| ! | CAGTGTTGTTGAGGTACCCT+TGG | + | chr8_2:58642638-58642657 | Msa1257770:intron | 50.0% |
| !! | AGGGTACTTTTCTTCTCCCC+CGG | + | chr8_2:58643059-58643078 | Msa1257770:intron | 50.0% |
| !!! | CTCTGTCTTTTCTCTGGAGC+TGG | - | chr8_2:58643290-58643309 | None:intergenic | 50.0% |
| ! | GCTTCCCTGTGGGTTATATC+AGG | - | chr8_2:58643508-58643527 | None:intergenic | 50.0% |
| GTGAGAGACACTCATTACCG+AGG | - | chr8_2:58643725-58643744 | None:intergenic | 50.0% | |
| GAAGACAAATGTGTGCCAGC+AGG | + | chr8_2:58644396-58644415 | Msa1257770:CDS | 50.0% | |
| AAAGTTGCTCGGAAGGAGGG+AGG | - | chr8_2:58641765-58641784 | None:intergenic | 55.0% | |
| !! | TGGTGTCACAGATGGTGCAG+TGG | - | chr8_2:58641795-58641814 | None:intergenic | 55.0% |
| TCAGCTACAGTCCTAGTGGG+AGG | - | chr8_2:58642311-58642330 | None:intergenic | 55.0% | |
| TTGGATCTCGTCCCTGCAGA+TGG | - | chr8_2:58643467-58643486 | None:intergenic | 55.0% | |
| ATTCTTGGCAGCTGCGCTGA+AGG | - | chr8_2:58643530-58643549 | None:intergenic | 55.0% | |
| TGCGCTGAAGGCTTCCCTGT+GGG | - | chr8_2:58643518-58643537 | None:intergenic | 60.0% | |
| GGAAGGAGGGAGGTGGTCCA+AGG | - | chr8_2:58641755-58641774 | None:intergenic | 65.0% | |
| GTTGCTCGGAAGGAGGGAGG+TGG | - | chr8_2:58641762-58641781 | None:intergenic | 65.0% | |
| GGGCACAGCCCTTCTTCACG+AGG | + | chr8_2:58642877-58642896 | Msa1257770:intron | 65.0% | |
| CTGCGCTGAAGGCTTCCCTG+TGG | - | chr8_2:58643519-58643538 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 58641443 | 58644838 | 58641443 | ID=Msa1257770;Name=Msa1257770 |
| chr8_2 | mRNA | 58641443 | 58644838 | 58641443 | ID=Msa1257770-mRNA-1;Parent=Msa1257770;Name=Msa1257770-mRNA-1;_AED=0.12;_eAED=0.12;_QI=281|1|1|1|1|1|7|208|219 |
| chr8_2 | exon | 58641443 | 58641822 | 58641443 | ID=Msa1257770-mRNA-1:exon:18164;Parent=Msa1257770-mRNA-1 |
| chr8_2 | exon | 58641946 | 58642104 | 58641946 | ID=Msa1257770-mRNA-1:exon:18165;Parent=Msa1257770-mRNA-1 |
| chr8_2 | exon | 58642236 | 58642362 | 58642236 | ID=Msa1257770-mRNA-1:exon:18166;Parent=Msa1257770-mRNA-1 |
| chr8_2 | exon | 58643291 | 58643339 | 58643291 | ID=Msa1257770-mRNA-1:exon:18167;Parent=Msa1257770-mRNA-1 |
| chr8_2 | exon | 58643474 | 58643549 | 58643474 | ID=Msa1257770-mRNA-1:exon:18168;Parent=Msa1257770-mRNA-1 |
| chr8_2 | exon | 58644343 | 58644417 | 58644343 | ID=Msa1257770-mRNA-1:exon:18169;Parent=Msa1257770-mRNA-1 |
| chr8_2 | exon | 58644556 | 58644838 | 58644556 | ID=Msa1257770-mRNA-1:exon:18170;Parent=Msa1257770-mRNA-1 |
| chr8_2 | five_prime_UTR | 58641443 | 58641723 | 58641443 | ID=Msa1257770-mRNA-1:five_prime_utr;Parent=Msa1257770-mRNA-1 |
| chr8_2 | CDS | 58641724 | 58641822 | 58641724 | ID=Msa1257770-mRNA-1:cds;Parent=Msa1257770-mRNA-1 |
| chr8_2 | CDS | 58641946 | 58642104 | 58641946 | ID=Msa1257770-mRNA-1:cds;Parent=Msa1257770-mRNA-1 |
| chr8_2 | CDS | 58642236 | 58642362 | 58642236 | ID=Msa1257770-mRNA-1:cds;Parent=Msa1257770-mRNA-1 |
| chr8_2 | CDS | 58643291 | 58643339 | 58643291 | ID=Msa1257770-mRNA-1:cds;Parent=Msa1257770-mRNA-1 |
| chr8_2 | CDS | 58643474 | 58643549 | 58643474 | ID=Msa1257770-mRNA-1:cds;Parent=Msa1257770-mRNA-1 |
| chr8_2 | CDS | 58644343 | 58644417 | 58644343 | ID=Msa1257770-mRNA-1:cds;Parent=Msa1257770-mRNA-1 |
| chr8_2 | CDS | 58644556 | 58644630 | 58644556 | ID=Msa1257770-mRNA-1:cds;Parent=Msa1257770-mRNA-1 |
| chr8_2 | three_prime_UTR | 58644631 | 58644838 | 58644631 | ID=Msa1257770-mRNA-1:three_prime_utr;Parent=Msa1257770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
