Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207830 | sp|O22152|YAB1_ARATH | 61.009 | 218 | 74 | 6 | 10 | 219 | 15 | 229 | 2.55e-81 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207830 | G7JK46 | 98.630 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 1.20e-158 | 446 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1207830 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641620 | Msa1207830 | 0.821150 | 4.705028e-53 | -8.615850e-47 |
| Msa0184070 | Msa1207830 | 0.854670 | 1.054194e-61 | -8.615850e-47 |
| Msa1129920 | Msa1207830 | 0.851532 | 8.345786e-61 | -8.615850e-47 |
| Msa1207830 | Msa1257730 | 0.826658 | 2.403595e-54 | -8.615850e-47 |
| Msa1207830 | Msa1257770 | 0.985383 | 2.141763e-163 | -8.615850e-47 |
| Msa1207830 | Msa1329170 | 0.901701 | 2.052399e-78 | -8.615850e-47 |
| Msa1207830 | Msa1341340 | 0.813983 | 1.941835e-51 | -8.615850e-47 |
| Msa1207830 | Msa1450530 | 0.900317 | 8.270467e-78 | -8.615850e-47 |
| Msa0601110 | Msa1207830 | 0.833906 | 4.073869e-56 | -8.615850e-47 |
| Msa0601120 | Msa1207830 | 0.833415 | 5.404273e-56 | -8.615850e-47 |
| Msa0886880 | Msa1207830 | 0.804599 | 1.999389e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207830 | MtrunA17_Chr4g0056521 | 98.630 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 2.31e-162 | 446 |
| Msa1207830 | MtrunA17_Chr4g0011841 | 70.792 | 202 | 52 | 5 | 20 | 219 | 25 | 221 | 4.00e-90 | 264 |
| Msa1207830 | MtrunA17_Chr2g0322221 | 49.510 | 204 | 91 | 6 | 8 | 209 | 2 | 195 | 1.52e-56 | 178 |
| Msa1207830 | MtrunA17_Chr4g0063931 | 53.333 | 180 | 64 | 5 | 7 | 182 | 2 | 165 | 3.88e-55 | 174 |
| Msa1207830 | MtrunA17_Chr4g0025361 | 49.010 | 202 | 77 | 7 | 9 | 209 | 1 | 177 | 8.81e-50 | 160 |
| Msa1207830 | MtrunA17_Chr5g0413381 | 49.686 | 159 | 71 | 4 | 18 | 175 | 12 | 162 | 7.19e-46 | 150 |
| Msa1207830 | MtrunA17_Chr5g0419871 | 41.317 | 167 | 79 | 3 | 9 | 174 | 7 | 155 | 4.97e-34 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1207830 | AT2G45190.1 | 61.009 | 218 | 74 | 6 | 10 | 219 | 15 | 229 | 2.60e-82 | 245 |
| Msa1207830 | AT4G00180.1 | 61.504 | 226 | 63 | 10 | 12 | 217 | 17 | 238 | 1.68e-73 | 223 |
| Msa1207830 | AT4G00180.2 | 60.190 | 211 | 60 | 10 | 27 | 217 | 1 | 207 | 3.55e-62 | 193 |
| Msa1207830 | AT2G26580.2 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.63e-56 | 177 |
| Msa1207830 | AT2G26580.1 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.63e-56 | 177 |
| Msa1207830 | AT1G08465.1 | 50.515 | 194 | 79 | 4 | 17 | 209 | 7 | 184 | 6.44e-55 | 174 |
| Msa1207830 | AT2G45190.2 | 57.143 | 168 | 61 | 6 | 60 | 219 | 1 | 165 | 3.73e-54 | 171 |
| Msa1207830 | AT1G23420.1 | 46.286 | 175 | 90 | 3 | 6 | 178 | 8 | 180 | 6.59e-39 | 134 |
| Msa1207830 | AT1G23420.2 | 46.286 | 175 | 90 | 3 | 6 | 178 | 39 | 211 | 3.60e-38 | 133 |
| Msa1207830 | AT1G69180.1 | 45.000 | 160 | 69 | 3 | 15 | 174 | 16 | 156 | 6.32e-34 | 120 |
Find 79 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGGTTCATCATAAAATT+TGG | 0.162315 | 8_1:-65641350 | None:intergenic |
| AATCATTTGGTGCATTTATA+TGG | 0.220470 | 8_1:-65641367 | None:intergenic |
| TTATCACTAGGTAGCTCTTT+TGG | 0.238958 | 8_1:+65643763 | Msa1207830:three_prime_UTR |
| ACCAGAAGGTTATGATGATT+TGG | 0.269243 | 8_1:-65641174 | None:intergenic |
| GGTAGTACTAAGGAAATTAA+AGG | 0.299349 | 8_1:-65643838 | None:intergenic |
| CCAGAAGGTTATGATGATTT+GGG | 0.306156 | 8_1:-65641173 | None:intergenic |
| TATATATTCGGTTTGATGAT+TGG | 0.328788 | 8_1:-65640796 | None:intergenic |
| ATAAAATTTGGAGCTGGGTT+TGG | 0.340235 | 8_1:-65641338 | None:intergenic |
| GCTTCCCTGTGGGTTATATC+AGG | 0.345088 | 8_1:-65642594 | None:intergenic |
| CCCAAATCATCATAACCTTC+TGG | 0.358123 | 8_1:+65641173 | Msa1207830:CDS |
| AGAGGACGACATTATATATT+CGG | 0.359434 | 8_1:-65640808 | None:intergenic |
| GTCTTCTTCATAGTCTGATC+AGG | 0.388325 | 8_1:-65643452 | None:intergenic |
| AAAAGGGTTCCGTGGCAATA+TGG | 0.396523 | 8_1:+65640567 | Msa1207830:five_prime_UTR |
| AGAGAGATTGATGCATTAGT+AGG | 0.399847 | 8_1:-65643696 | None:intergenic |
| CTGATTGATTGATAGATAGA+TGG | 0.429694 | 8_1:-65640761 | None:intergenic |
| CACTTCCCACACATTCACTT+TGG | 0.432093 | 8_1:+65643422 | Msa1207830:CDS |
| TGTCCCAAATGAAACTGATT+GGG | 0.435332 | 8_1:-65641138 | None:intergenic |
| TTCCTTAGTACTACCGTAGC+TGG | 0.442078 | 8_1:+65643846 | Msa1207830:three_prime_UTR |
| TTCAACCACAACATTATCCT+TGG | 0.449974 | 8_1:+65640830 | Msa1207830:CDS |
| TAAACAAAGAGAGAAAGAAA+AGG | 0.467919 | 8_1:+65640550 | Msa1207830:five_prime_UTR |
| GTGTCCCAAATGAAACTGAT+TGG | 0.468609 | 8_1:-65641139 | None:intergenic |
| AAAGGAGGATCATACATTCT+TGG | 0.469847 | 8_1:-65642631 | None:intergenic |
| AGTAATGCACGCATGTTGAC+TGG | 0.472196 | 8_1:-65641105 | None:intergenic |
| TTCATCATAAAATTTGGAGC+TGG | 0.473136 | 8_1:-65641344 | None:intergenic |
| TAATGTTATGTTGATAATCA+AGG | 0.477535 | 8_1:+65643731 | Msa1207830:three_prime_UTR |
| GGAGGCATAGAGAAATCATT+TGG | 0.480020 | 8_1:-65641380 | None:intergenic |
| TAATAAATACTAATAAACAT+AGG | 0.480258 | 8_1:-65640593 | None:intergenic |
| TCACGTCTGTTTATGATTGG+TGG | 0.480315 | 8_1:-65641434 | None:intergenic |
| TCATCATAAAATTTGGAGCT+GGG | 0.482099 | 8_1:-65641343 | None:intergenic |
| AAACAAAGAGAGAAAGAAAA+GGG | 0.485188 | 8_1:+65640551 | Msa1207830:five_prime_UTR |
| ATCTCACGTCTGTTTATGAT+TGG | 0.489279 | 8_1:-65641437 | None:intergenic |
| GATTATGTGTTGTGAAAGAA+AGG | 0.492989 | 8_1:-65640702 | None:intergenic |
| ATTCTTGGCAGCTGCGCTGA+AGG | 0.503305 | 8_1:-65642616 | None:intergenic |
| CAAAGTGAATGTGTGGGAAG+TGG | 0.524635 | 8_1:-65643421 | None:intergenic |
| CTGTTTATGATTGGTGGTCG+TGG | 0.531680 | 8_1:-65641428 | None:intergenic |
| AATAAATACTAATAAACATA+GGG | 0.531963 | 8_1:-65640592 | None:intergenic |
| AACCAGCTACGGTAGTACTA+AGG | 0.531999 | 8_1:-65643848 | None:intergenic |
| TGCGCTGAAGGCTTCCCTGT+GGG | 0.539083 | 8_1:-65642604 | None:intergenic |
| CAGATTCTGATGAAAGATGC+GGG | 0.541160 | 8_1:+65643641 | Msa1207830:CDS |
| AACAAAGTTGCTCGGAAGGA+GGG | 0.547749 | 8_1:-65640860 | None:intergenic |
| GGAAGGAGGGAGGTGGTCCA+AGG | 0.549892 | 8_1:-65640847 | None:intergenic |
| GAAGACAAATGTGTGCCAGC+AGG | 0.553012 | 8_1:+65643469 | Msa1207830:CDS |
| CTGCGCTGAAGGCTTCCCTG+TGG | 0.555021 | 8_1:-65642605 | None:intergenic |
| GATGTTTCATACAGCAAGGA+TGG | 0.571365 | 8_1:-65640907 | None:intergenic |
| GAACTTGTAACTAGAAAGCA+AGG | 0.573026 | 8_1:-65643894 | None:intergenic |
| GGATAATGTTGTGGTTGAAG+AGG | 0.579637 | 8_1:-65640826 | None:intergenic |
| GTCTTGAACAAGCTTGTGCA+AGG | 0.580384 | 8_1:-65641045 | None:intergenic |
| TAACAAAGTTGCTCGGAAGG+AGG | 0.582448 | 8_1:-65640861 | None:intergenic |
| GTTGCTCGGAAGGAGGGAGG+TGG | 0.583306 | 8_1:-65640854 | None:intergenic |
| ATTAGATAAGTAACCAGCTA+CGG | 0.584275 | 8_1:-65643859 | None:intergenic |
| GATTGACAGACTTAATGCGT+TGG | 0.585391 | 8_1:-65642572 | None:intergenic |
| ACATAACAAAGTTGCTCGGA+AGG | 0.586092 | 8_1:-65640864 | None:intergenic |
| GAGAGATTGATGCATTAGTA+GGG | 0.586283 | 8_1:-65643695 | None:intergenic |
| AAAGTGAATGTGTGGGAAGT+GGG | 0.594462 | 8_1:-65643420 | None:intergenic |
| CTCATCAGCTACAGTCCTAG+TGG | 0.598065 | 8_1:-65641402 | None:intergenic |
| AGCAAGGATGGTGTCACAGA+TGG | 0.603099 | 8_1:-65640895 | None:intergenic |
| TCAATCCTGATATAACCCAC+AGG | 0.603889 | 8_1:+65642589 | Msa1207830:CDS |
| TCATCAGCTACAGTCCTAGT+GGG | 0.606377 | 8_1:-65641401 | None:intergenic |
| ATTTCTCTATGCCTCCCACT+AGG | 0.608537 | 8_1:+65641387 | Msa1207830:CDS |
| ACAAGTTAACCACCACACCT+TGG | 0.608577 | 8_1:-65640738 | None:intergenic |
| AAAGCATATCCAAGGTGTGG+TGG | 0.610066 | 8_1:+65640729 | Msa1207830:five_prime_UTR |
| TCAGATTCTGATGAAAGATG+CGG | 0.615278 | 8_1:+65643640 | Msa1207830:CDS |
| CAGAAGGTTATGATGATTTG+GGG | 0.623732 | 8_1:-65641172 | None:intergenic |
| GTGGACATAACAAAGTTGCT+CGG | 0.624197 | 8_1:-65640868 | None:intergenic |
| AGAGAAAGAAAAGGGTTCCG+TGG | 0.624758 | 8_1:+65640559 | Msa1207830:five_prime_UTR |
| ATGAGACCAAAGTGAATGTG+TGG | 0.636661 | 8_1:-65643428 | None:intergenic |
| GTCCCAAATGAAACTGATTG+GGG | 0.640416 | 8_1:-65641137 | None:intergenic |
| CAATCCTGATATAACCCACA+GGG | 0.644329 | 8_1:+65642590 | Msa1207830:CDS |
| AGGACTACTACATTATCACT+AGG | 0.658383 | 8_1:+65643751 | Msa1207830:three_prime_UTR |
| AAAGTTGCTCGGAAGGAGGG+AGG | 0.666622 | 8_1:-65640857 | None:intergenic |
| CATAGGGAACCATATTGCCA+CGG | 0.673341 | 8_1:-65640576 | None:intergenic |
| ATGAAGCGATTGTATGCTGA+GGG | 0.673566 | 8_1:-65642404 | None:intergenic |
| TCAGCTACAGTCCTAGTGGG+AGG | 0.678197 | 8_1:-65641398 | None:intergenic |
| TGGTGTCACAGATGGTGCAG+TGG | 0.683501 | 8_1:-65640887 | None:intergenic |
| AAGACTGTTACTGTGAGATG+CGG | 0.688688 | 8_1:+65641063 | Msa1207830:CDS |
| TGAGACCAAAGTGAATGTGT+GGG | 0.708380 | 8_1:-65643427 | None:intergenic |
| GTGGTCCAAGGATAATGTTG+TGG | 0.713676 | 8_1:-65640835 | None:intergenic |
| GATGAAGCGATTGTATGCTG+AGG | 0.735800 | 8_1:-65642405 | None:intergenic |
| TCCCAAATGAAACTGATTGG+GGG | 0.774348 | 8_1:-65641136 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAAAATA+TGG | + | chr8_1:65643108-65643127 | Msa1207830:intron | 0.0% |
| !! | AATAAATACTAATAAACATA+GGG | - | chr8_1:65640595-65640614 | None:intergenic | 10.0% |
| !! | TAATAAATACTAATAAACAT+AGG | - | chr8_1:65640596-65640615 | None:intergenic | 10.0% |
| !! | AGTTCAAATTAATAAATTAT+GGG | + | chr8_1:65641588-65641607 | Msa1207830:intron | 10.0% |
| !! | AAAAAAAAATTTACTTTATG+TGG | + | chr8_1:65641690-65641709 | Msa1207830:intron | 10.0% |
| !!! | GAAATTATTTATTGATTTTA+GGG | + | chr8_1:65641947-65641966 | Msa1207830:intron | 10.0% |
| !! | TATATATTATATATGTAAGA+TGG | + | chr8_1:65642097-65642116 | Msa1207830:intron | 10.0% |
| !! | ATATATTATATATGTAAGAT+GGG | + | chr8_1:65642098-65642117 | Msa1207830:intron | 10.0% |
| !! | ATTCATTTATTTATAAGTTA+AGG | - | chr8_1:65642660-65642679 | None:intergenic | 10.0% |
| !!! | ATATTGATTAAATAAAGTTA+AGG | + | chr8_1:65642967-65642986 | Msa1207830:intron | 10.0% |
| !! | GTTATATTTGCATAAAAAAA+TGG | - | chr8_1:65640993-65641012 | None:intergenic | 15.0% |
| !! | TTAATGTATGGTATATAAAA+TGG | - | chr8_1:65641239-65641258 | None:intergenic | 15.0% |
| !! | GAGTTCAAATTAATAAATTA+TGG | + | chr8_1:65641587-65641606 | Msa1207830:intron | 15.0% |
| !!! | GGAAATTATTTATTGATTTT+AGG | + | chr8_1:65641946-65641965 | Msa1207830:intron | 15.0% |
| !! | TATATTATATATGTAAGATG+GGG | + | chr8_1:65642099-65642118 | Msa1207830:intron | 15.0% |
| !! | AACAGATTAATTAAATTGAA+AGG | + | chr8_1:65642274-65642293 | Msa1207830:intron | 15.0% |
| !!! | GATTTTGATATATATGATAA+CGG | + | chr8_1:65642343-65642362 | Msa1207830:intron | 15.0% |
| !!! | AGTTAAAAAAAAAAGTACAA+TGG | - | chr8_1:65642451-65642470 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTAAGGAGAAA+AGG | + | chr8_1:65642878-65642897 | Msa1207830:intron | 15.0% |
| !! | CATAAAATTAATCAAGATTA+AGG | - | chr8_1:65643073-65643092 | None:intergenic | 15.0% |
| !!! | TAGATATTTACATGTTTTAT+AGG | - | chr8_1:65643239-65643258 | None:intergenic | 15.0% |
| !! | CATGTAAATATCTATAAAAA+AGG | + | chr8_1:65643245-65643264 | Msa1207830:intron | 15.0% |
| !! | AATTAAGAGTAAAAAAGAAG+AGG | - | chr8_1:65641215-65641234 | None:intergenic | 20.0% |
| !! | ATATGGTTCATCATAAAATT+TGG | - | chr8_1:65641353-65641372 | None:intergenic | 20.0% |
| !!! | TGATCTTCTAAAATATTGTT+CGG | + | chr8_1:65641539-65641558 | Msa1207830:intron | 20.0% |
| !!! | TAGAGACATTATATCTTTTA+GGG | - | chr8_1:65641848-65641867 | None:intergenic | 20.0% |
| !!! | ATAGAGACATTATATCTTTT+AGG | - | chr8_1:65641849-65641868 | None:intergenic | 20.0% |
| !! | TTCTATGATAAGCTAAATTA+AGG | - | chr8_1:65641912-65641931 | None:intergenic | 20.0% |
| !! | AATAATACCTCATGAAAAAA+AGG | + | chr8_1:65642250-65642269 | Msa1207830:intron | 20.0% |
| !!! | CTGTTATATTTTCATATAGT+TGG | - | chr8_1:65642318-65642337 | None:intergenic | 20.0% |
| !! | CAACTATATGAAAATATAAC+AGG | + | chr8_1:65642316-65642335 | Msa1207830:intron | 20.0% |
| !! | ATGTGAAGTAAATCTAAATA+CGG | + | chr8_1:65642529-65642548 | Msa1207830:intron | 20.0% |
| !! | ATTTATAAGTTAAGGAGAAA+AGG | - | chr8_1:65642652-65642671 | None:intergenic | 20.0% |
| !! | TAAAATTAATAACCCTAACT+TGG | + | chr8_1:65642713-65642732 | Msa1207830:intron | 20.0% |
| !! | AAAATTAATAACCCTAACTT+GGG | + | chr8_1:65642714-65642733 | Msa1207830:intron | 20.0% |
| !! | ACCTCTCAAAAAAAAAATTA+AGG | + | chr8_1:65642870-65642889 | Msa1207830:intron | 20.0% |
| !!! | TCCTTAATTTTTTTTTTGAG+AGG | - | chr8_1:65642874-65642893 | None:intergenic | 20.0% |
| !! | TAAATAAAGTTAAGGAGAAA+AGG | + | chr8_1:65642975-65642994 | Msa1207830:intron | 20.0% |
| !! | TAATCAAGATTAAGGATAAA+AGG | - | chr8_1:65643065-65643084 | None:intergenic | 20.0% |
| !!! | AATCATGGACTAAAAAAAAT+TGG | - | chr8_1:65643296-65643315 | None:intergenic | 20.0% |
| !! | ACAATTCAAAATGAATGATA+TGG | + | chr8_1:65643337-65643356 | Msa1207830:intron | 20.0% |
| !!! | TAATGTTATGTTGATAATCA+AGG | + | chr8_1:65643731-65643750 | Msa1207830:three_prime_UTR | 20.0% |
| ! | TAAACAAAGAGAGAAAGAAA+AGG | + | chr8_1:65640550-65640569 | Msa1207830:five_prime_UTR | 25.0% |
| ! | AAACAAAGAGAGAAAGAAAA+GGG | + | chr8_1:65640551-65640570 | Msa1207830:five_prime_UTR | 25.0% |
| !! | AATCAAAAAAAGCATATCCA+AGG | + | chr8_1:65640721-65640740 | Msa1207830:five_prime_UTR | 25.0% |
| !! | TATATATTCGGTTTGATGAT+TGG | - | chr8_1:65640799-65640818 | None:intergenic | 25.0% |
| !!! | GATTCCTTCATTTTTTTTTC+AGG | + | chr8_1:65641014-65641033 | Msa1207830:intron | 25.0% |
| ! | GTTGCAAAGTAATTAATGTA+TGG | - | chr8_1:65641251-65641270 | None:intergenic | 25.0% |
| !!! | AATCATTTGGTGCATTTATA+TGG | - | chr8_1:65641370-65641389 | None:intergenic | 25.0% |
| !! | TTACTTTGTTTGAGTAACTT+AGG | + | chr8_1:65641473-65641492 | Msa1207830:intron | 25.0% |
| ! | TTAAAGTAAGGAATGGTTTA+AGG | - | chr8_1:65641815-65641834 | None:intergenic | 25.0% |
| !! | TGTCCTTTTTGTTAATTTCT+CGG | + | chr8_1:65642009-65642028 | Msa1207830:intron | 25.0% |
| ! | TAAGTATCAACTGAATCATA+AGG | + | chr8_1:65642207-65642226 | Msa1207830:intron | 25.0% |
| !!! | CAAATTTTAGTTGAAGTTGA+TGG | + | chr8_1:65642784-65642803 | Msa1207830:intron | 25.0% |
| !! | ATTAAGGATAAAAGGTACAA+TGG | - | chr8_1:65643057-65643076 | None:intergenic | 25.0% |
| !!! | AATCAATTTTTTTTTCTCCG+AGG | + | chr8_1:65643149-65643168 | Msa1207830:intron | 25.0% |
| !! | CATTTTGAATTGTTGAAACA+GGG | - | chr8_1:65643330-65643349 | None:intergenic | 25.0% |
| !! | TCATTTTGAATTGTTGAAAC+AGG | - | chr8_1:65643331-65643350 | None:intergenic | 25.0% |
| !!! | TATGGTTTTCTAGTTCATTT+TGG | + | chr8_1:65643355-65643374 | Msa1207830:intron | 25.0% |
| ! | AAAGTATGTCACATATCAAA+AGG | - | chr8_1:65643385-65643404 | None:intergenic | 25.0% |
| ! | CAGAAATGAAAAAAAGTCAT+GGG | - | chr8_1:65643572-65643591 | None:intergenic | 25.0% |
| ! | TCAGAAATGAAAAAAAGTCA+TGG | - | chr8_1:65643573-65643592 | None:intergenic | 25.0% |
| GATTATGTGTTGTGAAAGAA+AGG | - | chr8_1:65640705-65640724 | None:intergenic | 30.0% | |
| CTGATTGATTGATAGATAGA+TGG | - | chr8_1:65640764-65640783 | None:intergenic | 30.0% | |
| AGAGGACGACATTATATATT+CGG | - | chr8_1:65640811-65640830 | None:intergenic | 30.0% | |
| CTCACCTGAAAAAAAAATGA+AGG | - | chr8_1:65641021-65641040 | None:intergenic | 30.0% | |
| ! | AAATTGAGAGTATAACCAGA+AGG | - | chr8_1:65641191-65641210 | None:intergenic | 30.0% |
| ! | TCTAAGTAGTATAGCTTTTG+TGG | + | chr8_1:65641276-65641295 | Msa1207830:intron | 30.0% |
| !!! | CATTTTTTTTTTCTTGCAGC+AGG | + | chr8_1:65641307-65641326 | Msa1207830:intron | 30.0% |
| ! | TCATCATAAAATTTGGAGCT+GGG | - | chr8_1:65641346-65641365 | None:intergenic | 30.0% |
| ! | TTCATCATAAAATTTGGAGC+TGG | - | chr8_1:65641347-65641366 | None:intergenic | 30.0% |
| !!! | AAAACCATCGTTTTGATTGA+GGG | - | chr8_1:65641502-65641521 | None:intergenic | 30.0% |
| !!! | AAAAACCATCGTTTTGATTG+AGG | - | chr8_1:65641503-65641522 | None:intergenic | 30.0% |
| !! | CTTCTAAAATATTGTTCGGT+TGG | + | chr8_1:65641543-65641562 | Msa1207830:intron | 30.0% |
| ! | TTTATGTGGTTGCTATTGAT+TGG | + | chr8_1:65641704-65641723 | Msa1207830:intron | 30.0% |
| ! | TTCCACTTTCTTTTGGTAAA+AGG | + | chr8_1:65641756-65641775 | Msa1207830:intron | 30.0% |
| ! | TTCCTTTTACCAAAAGAAAG+TGG | - | chr8_1:65641761-65641780 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTGGTAAAAGGA+AGG | + | chr8_1:65641760-65641779 | Msa1207830:intron | 30.0% |
| ! | AAAAGGAAGGAAGTCTTTTA+TGG | + | chr8_1:65641773-65641792 | Msa1207830:intron | 30.0% |
| ATGTCTCTATAAGTAATGAC+AGG | + | chr8_1:65641859-65641878 | Msa1207830:intron | 30.0% | |
| CATAGAACAGTTTGTAATAC+TGG | + | chr8_1:65641925-65641944 | Msa1207830:intron | 30.0% | |
| GTACCGAGAAATTAACAAAA+AGG | - | chr8_1:65642015-65642034 | None:intergenic | 30.0% | |
| ATAGAGATGAAAGCAAACTT+AGG | + | chr8_1:65642047-65642066 | Msa1207830:intron | 30.0% | |
| ! | TGGTGGATAGAAAAAAGATA+GGG | + | chr8_1:65642130-65642149 | Msa1207830:intron | 30.0% |
| TTTAAACAACTACTATTCCG+GGG | - | chr8_1:65642169-65642188 | None:intergenic | 30.0% | |
| CTTTAAACAACTACTATTCC+GGG | - | chr8_1:65642170-65642189 | None:intergenic | 30.0% | |
| ! | GCTTTAAACAACTACTATTC+CGG | - | chr8_1:65642171-65642190 | None:intergenic | 30.0% |
| !!! | TCTGTTACCTTTTTTTCATG+AGG | - | chr8_1:65642260-65642279 | None:intergenic | 30.0% |
| TATAAGTTAAGGAGAAAAGG+AGG | - | chr8_1:65642649-65642668 | None:intergenic | 30.0% | |
| ! | AATGTTGTGTGTTGACAAAA+AGG | + | chr8_1:65643200-65643219 | Msa1207830:intron | 30.0% |
| !! | AACATTTTTCAGCGAGAATA+GGG | - | chr8_1:65643519-65643538 | None:intergenic | 30.0% |
| !! | AAACATTTTTCAGCGAGAAT+AGG | - | chr8_1:65643520-65643539 | None:intergenic | 30.0% |
| ! | TTTTATGCTTCAGCAAATCT+TGG | + | chr8_1:65643665-65643684 | Msa1207830:CDS | 30.0% |
| GGTAGTACTAAGGAAATTAA+AGG | - | chr8_1:65643841-65643860 | None:intergenic | 30.0% | |
| ATTAGATAAGTAACCAGCTA+CGG | - | chr8_1:65643862-65643881 | None:intergenic | 30.0% | |
| ! | AAAAAAGCATATCCAAGGTG+TGG | + | chr8_1:65640726-65640745 | Msa1207830:five_prime_UTR | 35.0% |
| TTCAACCACAACATTATCCT+TGG | + | chr8_1:65640830-65640849 | Msa1207830:CDS | 35.0% | |
| TAGTGATGTTTCATACAGCA+AGG | - | chr8_1:65640914-65640933 | None:intergenic | 35.0% | |
| ! | TAAGCTAGTGTTGAAAAGTG+GGG | - | chr8_1:65640953-65640972 | None:intergenic | 35.0% |
| ! | CTAAGCTAGTGTTGAAAAGT+GGG | - | chr8_1:65640954-65640973 | None:intergenic | 35.0% |
| !! | TTTTCAACACTAGCTTAGCT+AGG | + | chr8_1:65640956-65640975 | Msa1207830:intron | 35.0% |
| ! | TTTCAACACTAGCTTAGCTA+GGG | + | chr8_1:65640957-65640976 | Msa1207830:intron | 35.0% |
| TGTCCCAAATGAAACTGATT+GGG | - | chr8_1:65641141-65641160 | None:intergenic | 35.0% | |
| CAGAAGGTTATGATGATTTG+GGG | - | chr8_1:65641175-65641194 | None:intergenic | 35.0% | |
| CCAGAAGGTTATGATGATTT+GGG | - | chr8_1:65641176-65641195 | None:intergenic | 35.0% | |
| ACCAGAAGGTTATGATGATT+TGG | - | chr8_1:65641177-65641196 | None:intergenic | 35.0% | |
| !!! | TTTTTTTTTCTTGCAGCAGG+AGG | + | chr8_1:65641310-65641329 | Msa1207830:intron | 35.0% |
| ! | ATAAAATTTGGAGCTGGGTT+TGG | - | chr8_1:65641341-65641360 | None:intergenic | 35.0% |
| ATCTCACGTCTGTTTATGAT+TGG | - | chr8_1:65641440-65641459 | None:intergenic | 35.0% | |
| !! | GCACACTTTAAAGTAAGGAA+TGG | - | chr8_1:65641822-65641841 | None:intergenic | 35.0% |
| TTGCTTTCATCTCTATATGC+TGG | - | chr8_1:65642043-65642062 | None:intergenic | 35.0% | |
| TGTAAGATGGGGAAAATATG+TGG | + | chr8_1:65642110-65642129 | Msa1207830:intron | 35.0% | |
| !! | GTGGTGGATAGAAAAAAGAT+AGG | + | chr8_1:65642129-65642148 | Msa1207830:intron | 35.0% |
| TTAAACAACTACTATTCCGG+GGG | - | chr8_1:65642168-65642187 | None:intergenic | 35.0% | |
| AAAGGAGGATCATACATTCT+TGG | - | chr8_1:65642634-65642653 | None:intergenic | 35.0% | |
| ! | GGGTTCAAGATCTGAATTTT+CGG | + | chr8_1:65642734-65642753 | Msa1207830:intron | 35.0% |
| TGCTATGATAATTTACCTGC+TGG | - | chr8_1:65643487-65643506 | None:intergenic | 35.0% | |
| !! | ACATTTTTCAGCGAGAATAG+GGG | - | chr8_1:65643518-65643537 | None:intergenic | 35.0% |
| TGCATCATTCTTTCTTATCC+AGG | + | chr8_1:65643607-65643626 | Msa1207830:intron | 35.0% | |
| TCATTCTTTCTTATCCAGGA+AGG | + | chr8_1:65643611-65643630 | Msa1207830:intron | 35.0% | |
| TCAGATTCTGATGAAAGATG+CGG | + | chr8_1:65643640-65643659 | Msa1207830:CDS | 35.0% | |
| GAGAGATTGATGCATTAGTA+GGG | - | chr8_1:65643698-65643717 | None:intergenic | 35.0% | |
| AGAGAGATTGATGCATTAGT+AGG | - | chr8_1:65643699-65643718 | None:intergenic | 35.0% | |
| AGGACTACTACATTATCACT+AGG | + | chr8_1:65643751-65643770 | Msa1207830:three_prime_UTR | 35.0% | |
| ! | TTATCACTAGGTAGCTCTTT+TGG | + | chr8_1:65643763-65643782 | Msa1207830:three_prime_UTR | 35.0% |
| ! | TATCACTAGGTAGCTCTTTT+GGG | + | chr8_1:65643764-65643783 | Msa1207830:three_prime_UTR | 35.0% |
| GGATAATGTTGTGGTTGAAG+AGG | - | chr8_1:65640829-65640848 | None:intergenic | 40.0% | |
| ACATAACAAAGTTGCTCGGA+AGG | - | chr8_1:65640867-65640886 | None:intergenic | 40.0% | |
| GTGGACATAACAAAGTTGCT+CGG | - | chr8_1:65640871-65640890 | None:intergenic | 40.0% | |
| GATGTTTCATACAGCAAGGA+TGG | - | chr8_1:65640910-65640929 | None:intergenic | 40.0% | |
| ! | GCTAAGCTAGTGTTGAAAAG+TGG | - | chr8_1:65640955-65640974 | None:intergenic | 40.0% |
| AAGACTGTTACTGTGAGATG+CGG | + | chr8_1:65641063-65641082 | Msa1207830:CDS | 40.0% | |
| AAATGAAACTGATTGGGGGA+TGG | - | chr8_1:65641135-65641154 | None:intergenic | 40.0% | |
| ATCCCCCAATCAGTTTCATT+TGG | + | chr8_1:65641134-65641153 | Msa1207830:CDS | 40.0% | |
| TCCCCCAATCAGTTTCATTT+GGG | + | chr8_1:65641135-65641154 | Msa1207830:CDS | 40.0% | |
| TCCCAAATGAAACTGATTGG+GGG | - | chr8_1:65641139-65641158 | None:intergenic | 40.0% | |
| GTCCCAAATGAAACTGATTG+GGG | - | chr8_1:65641140-65641159 | None:intergenic | 40.0% | |
| GTGTCCCAAATGAAACTGAT+TGG | - | chr8_1:65641142-65641161 | None:intergenic | 40.0% | |
| CCCAAATCATCATAACCTTC+TGG | + | chr8_1:65641173-65641192 | Msa1207830:CDS | 40.0% | |
| ! | GGAGGCATAGAGAAATCATT+TGG | - | chr8_1:65641383-65641402 | None:intergenic | 40.0% |
| TCACGTCTGTTTATGATTGG+TGG | - | chr8_1:65641437-65641456 | None:intergenic | 40.0% | |
| GTTTCCCTCAATCAAAACGA+TGG | + | chr8_1:65641495-65641514 | Msa1207830:intron | 40.0% | |
| ! | TTGATTGGACAGTGTTGTTG+AGG | + | chr8_1:65641719-65641738 | Msa1207830:intron | 40.0% |
| AGAAAGTGGAACAAGACCAA+GGG | - | chr8_1:65641747-65641766 | None:intergenic | 40.0% | |
| AAGAAAGTGGAACAAGACCA+AGG | - | chr8_1:65641748-65641767 | None:intergenic | 40.0% | |
| !!! | GGTCTTGTTCCACTTTCTTT+TGG | + | chr8_1:65641749-65641768 | Msa1207830:intron | 40.0% |
| !! | GGCATGCACACTTTAAAGTA+AGG | - | chr8_1:65641827-65641846 | None:intergenic | 40.0% |
| AAACAAAGCCTCGTGAAGAA+GGG | - | chr8_1:65641978-65641997 | None:intergenic | 40.0% | |
| AAAACAAAGCCTCGTGAAGA+AGG | - | chr8_1:65641979-65641998 | None:intergenic | 40.0% | |
| AAGATGGGGAAAATATGTGG+TGG | + | chr8_1:65642113-65642132 | Msa1207830:intron | 40.0% | |
| ATGAAGCGATTGTATGCTGA+GGG | - | chr8_1:65642407-65642426 | None:intergenic | 40.0% | |
| GATTGACAGACTTAATGCGT+TGG | - | chr8_1:65642575-65642594 | None:intergenic | 40.0% | |
| TCAATCCTGATATAACCCAC+AGG | + | chr8_1:65642589-65642608 | Msa1207830:CDS | 40.0% | |
| CAATCCTGATATAACCCACA+GGG | + | chr8_1:65642590-65642609 | Msa1207830:CDS | 40.0% | |
| CAGATCTTGAACCCAAGTTA+GGG | - | chr8_1:65642728-65642747 | None:intergenic | 40.0% | |
| TCAGATCTTGAACCCAAGTT+AGG | - | chr8_1:65642729-65642748 | None:intergenic | 40.0% | |
| !! | TTGAAGTTGATGGTTCTCCT+CGG | + | chr8_1:65642794-65642813 | Msa1207830:intron | 40.0% |
| AAGGAGAAAAGGATGCTCTT+TGG | + | chr8_1:65642889-65642908 | Msa1207830:intron | 40.0% | |
| TGAATTGTTGAAACAGGGCA+GGG | - | chr8_1:65643325-65643344 | None:intergenic | 40.0% | |
| TTGAATTGTTGAAACAGGGC+AGG | - | chr8_1:65643326-65643345 | None:intergenic | 40.0% | |
| ACATACTTTCTGTGTGACAG+TGG | + | chr8_1:65643396-65643415 | Msa1207830:intron | 40.0% | |
| CATACTTTCTGTGTGACAGT+GGG | + | chr8_1:65643397-65643416 | Msa1207830:intron | 40.0% | |
| AAAGTGAATGTGTGGGAAGT+GGG | - | chr8_1:65643423-65643442 | None:intergenic | 40.0% | |
| TGAGACCAAAGTGAATGTGT+GGG | - | chr8_1:65643430-65643449 | None:intergenic | 40.0% | |
| ATGAGACCAAAGTGAATGTG+TGG | - | chr8_1:65643431-65643450 | None:intergenic | 40.0% | |
| GTCTTCTTCATAGTCTGATC+AGG | - | chr8_1:65643455-65643474 | None:intergenic | 40.0% | |
| CAGATTCTGATGAAAGATGC+GGG | + | chr8_1:65643641-65643660 | Msa1207830:CDS | 40.0% | |
| AGAGAAAGAAAAGGGTTCCG+TGG | + | chr8_1:65640559-65640578 | Msa1207830:five_prime_UTR | 45.0% | |
| AAAAGGGTTCCGTGGCAATA+TGG | + | chr8_1:65640567-65640586 | Msa1207830:five_prime_UTR | 45.0% | |
| CATAGGGAACCATATTGCCA+CGG | - | chr8_1:65640579-65640598 | None:intergenic | 45.0% | |
| AAAGCATATCCAAGGTGTGG+TGG | + | chr8_1:65640729-65640748 | Msa1207830:five_prime_UTR | 45.0% | |
| ACAAGTTAACCACCACACCT+TGG | - | chr8_1:65640741-65640760 | None:intergenic | 45.0% | |
| GTGGTCCAAGGATAATGTTG+TGG | - | chr8_1:65640838-65640857 | None:intergenic | 45.0% | |
| AACAAAGTTGCTCGGAAGGA+GGG | - | chr8_1:65640863-65640882 | None:intergenic | 45.0% | |
| TAACAAAGTTGCTCGGAAGG+AGG | - | chr8_1:65640864-65640883 | None:intergenic | 45.0% | |
| ! | CTAGTGTTGAAAAGTGGGGA+TGG | - | chr8_1:65640949-65640968 | None:intergenic | 45.0% |
| GTCTTGAACAAGCTTGTGCA+AGG | - | chr8_1:65641048-65641067 | None:intergenic | 45.0% | |
| AGTAATGCACGCATGTTGAC+TGG | - | chr8_1:65641108-65641127 | None:intergenic | 45.0% | |
| ATTTCTCTATGCCTCCCACT+AGG | + | chr8_1:65641387-65641406 | Msa1207830:CDS | 45.0% | |
| TCATCAGCTACAGTCCTAGT+GGG | - | chr8_1:65641404-65641423 | None:intergenic | 45.0% | |
| ! | CTGTTTATGATTGGTGGTCG+TGG | - | chr8_1:65641431-65641450 | None:intergenic | 45.0% |
| ! | GGAACTCTCTGTCTTTTCTC+TGG | - | chr8_1:65642386-65642405 | None:intergenic | 45.0% |
| GATGAAGCGATTGTATGCTG+AGG | - | chr8_1:65642408-65642427 | None:intergenic | 45.0% | |
| TCTAAATACGGTCCATCTGC+AGG | + | chr8_1:65642541-65642560 | Msa1207830:intron | 45.0% | |
| CTAAATACGGTCCATCTGCA+GGG | + | chr8_1:65642542-65642561 | Msa1207830:intron | 45.0% | |
| TTCTCCGAGGTTTGCATACT+CGG | + | chr8_1:65643162-65643181 | Msa1207830:intron | 45.0% | |
| TAAGCCGAGTATGCAAACCT+CGG | - | chr8_1:65643169-65643188 | None:intergenic | 45.0% | |
| AGGGCAGGGAAATACAATCA+TGG | - | chr8_1:65643311-65643330 | None:intergenic | 45.0% | |
| CAAAGTGAATGTGTGGGAAG+TGG | - | chr8_1:65643424-65643443 | None:intergenic | 45.0% | |
| CACTTCCCACACATTCACTT+TGG | + | chr8_1:65643422-65643441 | Msa1207830:CDS | 45.0% | |
| GAATCTGATCATCTCCTTCC+TGG | - | chr8_1:65643628-65643647 | None:intergenic | 45.0% | |
| TTCCTTAGTACTACCGTAGC+TGG | + | chr8_1:65643846-65643865 | Msa1207830:three_prime_UTR | 45.0% | |
| AACCAGCTACGGTAGTACTA+AGG | - | chr8_1:65643851-65643870 | None:intergenic | 45.0% | |
| !! | AGCAAGGATGGTGTCACAGA+TGG | - | chr8_1:65640898-65640917 | None:intergenic | 50.0% |
| CTCATCAGCTACAGTCCTAG+TGG | - | chr8_1:65641405-65641424 | None:intergenic | 50.0% | |
| ! | CAGTGTTGTTGAGGTACCCT+TGG | + | chr8_1:65641728-65641747 | Msa1207830:intron | 50.0% |
| !! | AGGGTACTTTTCTTCTCCCC+CGG | + | chr8_1:65642149-65642168 | Msa1207830:intron | 50.0% |
| !!! | CTCTGTCTTTTCTCTGGAGC+TGG | - | chr8_1:65642380-65642399 | None:intergenic | 50.0% |
| ! | GCTTCCCTGTGGGTTATATC+AGG | - | chr8_1:65642597-65642616 | None:intergenic | 50.0% |
| GTGAGAGACACTCATTACCG+AGG | - | chr8_1:65642814-65642833 | None:intergenic | 50.0% | |
| GAAGACAAATGTGTGCCAGC+AGG | + | chr8_1:65643469-65643488 | Msa1207830:CDS | 50.0% | |
| AAAGTTGCTCGGAAGGAGGG+AGG | - | chr8_1:65640860-65640879 | None:intergenic | 55.0% | |
| !! | TGGTGTCACAGATGGTGCAG+TGG | - | chr8_1:65640890-65640909 | None:intergenic | 55.0% |
| TCAGCTACAGTCCTAGTGGG+AGG | - | chr8_1:65641401-65641420 | None:intergenic | 55.0% | |
| TTGGATCTCGTCCCTGCAGA+TGG | - | chr8_1:65642556-65642575 | None:intergenic | 55.0% | |
| ATTCTTGGCAGCTGCGCTGA+AGG | - | chr8_1:65642619-65642638 | None:intergenic | 55.0% | |
| TGCGCTGAAGGCTTCCCTGT+GGG | - | chr8_1:65642607-65642626 | None:intergenic | 60.0% | |
| GGAAGGAGGGAGGTGGTCCA+AGG | - | chr8_1:65640850-65640869 | None:intergenic | 65.0% | |
| GTTGCTCGGAAGGAGGGAGG+TGG | - | chr8_1:65640857-65640876 | None:intergenic | 65.0% | |
| GGGCACAGCCCTTCTTCACG+AGG | + | chr8_1:65641967-65641986 | Msa1207830:intron | 65.0% | |
| CTGCGCTGAAGGCTTCCCTG+TGG | - | chr8_1:65642608-65642627 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 65640538 | 65643911 | 65640538 | ID=Msa1207830;Name=Msa1207830 |
| chr8_1 | mRNA | 65640538 | 65643911 | 65640538 | ID=Msa1207830-mRNA-1;Parent=Msa1207830;Name=Msa1207830-mRNA-1;_AED=0.09;_eAED=0.09;_QI=281|1|1|1|1|1|7|208|219 |
| chr8_1 | exon | 65640538 | 65640917 | 65640538 | ID=Msa1207830-mRNA-1:exon:21523;Parent=Msa1207830-mRNA-1 |
| chr8_1 | exon | 65641036 | 65641194 | 65641036 | ID=Msa1207830-mRNA-1:exon:21524;Parent=Msa1207830-mRNA-1 |
| chr8_1 | exon | 65641326 | 65641452 | 65641326 | ID=Msa1207830-mRNA-1:exon:21525;Parent=Msa1207830-mRNA-1 |
| chr8_1 | exon | 65642381 | 65642429 | 65642381 | ID=Msa1207830-mRNA-1:exon:21526;Parent=Msa1207830-mRNA-1 |
| chr8_1 | exon | 65642563 | 65642638 | 65642563 | ID=Msa1207830-mRNA-1:exon:21527;Parent=Msa1207830-mRNA-1 |
| chr8_1 | exon | 65643416 | 65643490 | 65643416 | ID=Msa1207830-mRNA-1:exon:21528;Parent=Msa1207830-mRNA-1 |
| chr8_1 | exon | 65643629 | 65643911 | 65643629 | ID=Msa1207830-mRNA-1:exon:21529;Parent=Msa1207830-mRNA-1 |
| chr8_1 | five_prime_UTR | 65640538 | 65640818 | 65640538 | ID=Msa1207830-mRNA-1:five_prime_utr;Parent=Msa1207830-mRNA-1 |
| chr8_1 | CDS | 65640819 | 65640917 | 65640819 | ID=Msa1207830-mRNA-1:cds;Parent=Msa1207830-mRNA-1 |
| chr8_1 | CDS | 65641036 | 65641194 | 65641036 | ID=Msa1207830-mRNA-1:cds;Parent=Msa1207830-mRNA-1 |
| chr8_1 | CDS | 65641326 | 65641452 | 65641326 | ID=Msa1207830-mRNA-1:cds;Parent=Msa1207830-mRNA-1 |
| chr8_1 | CDS | 65642381 | 65642429 | 65642381 | ID=Msa1207830-mRNA-1:cds;Parent=Msa1207830-mRNA-1 |
| chr8_1 | CDS | 65642563 | 65642638 | 65642563 | ID=Msa1207830-mRNA-1:cds;Parent=Msa1207830-mRNA-1 |
| chr8_1 | CDS | 65643416 | 65643490 | 65643416 | ID=Msa1207830-mRNA-1:cds;Parent=Msa1207830-mRNA-1 |
| chr8_1 | CDS | 65643629 | 65643703 | 65643629 | ID=Msa1207830-mRNA-1:cds;Parent=Msa1207830-mRNA-1 |
| chr8_1 | three_prime_UTR | 65643704 | 65643911 | 65643704 | ID=Msa1207830-mRNA-1:three_prime_utr;Parent=Msa1207830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
