AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1329170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329170 MtrunA17_Chr4g0056521 98.630 219 2 1 1 219 1 218 2.31e-162 446
Msa1329170 MtrunA17_Chr4g0011841 70.792 202 52 5 20 219 25 221 4.00e-90 264
Msa1329170 MtrunA17_Chr2g0322221 49.510 204 91 6 8 209 2 195 1.52e-56 178
Msa1329170 MtrunA17_Chr4g0063931 53.333 180 64 5 7 182 2 165 3.88e-55 174
Msa1329170 MtrunA17_Chr4g0025361 49.010 202 77 7 9 209 1 177 8.81e-50 160
Msa1329170 MtrunA17_Chr5g0413381 49.686 159 71 4 18 175 12 162 7.19e-46 150
Msa1329170 MtrunA17_Chr5g0419871 41.317 167 79 3 9 174 7 155 4.97e-34 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329170 AT2G45190.1 61.009 218 74 6 10 219 15 229 2.60e-82 245
Msa1329170 AT4G00180.1 61.504 226 63 10 12 217 17 238 1.68e-73 223
Msa1329170 AT4G00180.2 60.190 211 60 10 27 217 1 207 3.55e-62 193
Msa1329170 AT2G26580.2 57.143 168 49 6 17 182 8 154 1.63e-56 177
Msa1329170 AT2G26580.1 57.143 168 49 6 17 182 8 154 1.63e-56 177
Msa1329170 AT1G08465.1 50.515 194 79 4 17 209 7 184 6.44e-55 174
Msa1329170 AT2G45190.2 57.143 168 61 6 60 219 1 165 3.73e-54 171
Msa1329170 AT1G23420.1 46.286 175 90 3 6 178 8 180 6.59e-39 134
Msa1329170 AT1G23420.2 46.286 175 90 3 6 178 39 211 3.60e-38 133
Msa1329170 AT1G69180.1 45.000 160 69 3 15 174 16 156 6.32e-34 120

Find 79 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATGGTTCATCATAAAATT+TGG 0.162315 8_4:+47492040 None:intergenic
AATCATTTGGTGCATTTATA+TGG 0.220470 8_4:+47492023 None:intergenic
TTATCACTAGGTAGCTCTTT+TGG 0.238958 8_4:-47489610 Msa1329170:three_prime_UTR
ACCAGAAGGTTATGATGATT+TGG 0.269243 8_4:+47492216 None:intergenic
GGTAGTACTAAGGAAATTAA+AGG 0.299349 8_4:+47489535 None:intergenic
CCAGAAGGTTATGATGATTT+GGG 0.306156 8_4:+47492217 None:intergenic
TATATATTCGGTTTGATGAT+TGG 0.328788 8_4:+47492599 None:intergenic
ATAAAATTTGGAGCTGGGTT+TGG 0.340235 8_4:+47492052 None:intergenic
GCTTCCCTGTGGGTTATATC+AGG 0.345088 8_4:+47490793 None:intergenic
CCCAAATCATCATAACCTTC+TGG 0.358123 8_4:-47492217 Msa1329170:intron
AGAGGACGACATTATATATT+CGG 0.359434 8_4:+47492587 None:intergenic
GTCTTCTTCATAGTCTGATC+AGG 0.388325 8_4:+47489921 None:intergenic
ATAGAGATTGATGCATTAGT+AGG 0.390762 8_4:+47489677 None:intergenic
AAAAGGGTTCCGTGGCAATA+TGG 0.396523 8_4:-47492828 Msa1329170:five_prime_UTR
CTGATTGATTGATAGATAGA+TGG 0.429694 8_4:+47492634 None:intergenic
CACTTCCCACACATTCACTT+TGG 0.432093 8_4:-47489951 Msa1329170:CDS
TGTCCCAAATGAAACTGATT+GGG 0.435332 8_4:+47492252 None:intergenic
TTCCTTAGTACTACCGTAGC+TGG 0.442078 8_4:-47489527 Msa1329170:three_prime_UTR
TTCAACCACAACATTATCCT+TGG 0.449974 8_4:-47492565 Msa1329170:CDS
TAAACAAAGAGAGAAAGAAA+AGG 0.467919 8_4:-47492845 Msa1329170:five_prime_UTR
GTGTCCCAAATGAAACTGAT+TGG 0.468609 8_4:+47492251 None:intergenic
AAAGGAGGATCATACATTCT+TGG 0.469847 8_4:+47490756 None:intergenic
AGTAATGCACGCATGTTGAC+TGG 0.472196 8_4:+47492285 None:intergenic
TTCATCATAAAATTTGGAGC+TGG 0.473136 8_4:+47492046 None:intergenic
TAATGTTATGTTGATAATCA+AGG 0.477535 8_4:-47489642 Msa1329170:three_prime_UTR
GGAGGCATAGAGAAATCATT+TGG 0.480020 8_4:+47492010 None:intergenic
TAATAAATACTAATAAACAT+AGG 0.480258 8_4:+47492802 None:intergenic
TCACGTCTGTTTATGATTGG+TGG 0.480315 8_4:+47491956 None:intergenic
TCATCATAAAATTTGGAGCT+GGG 0.482099 8_4:+47492047 None:intergenic
AAACAAAGAGAGAAAGAAAA+GGG 0.485188 8_4:-47492844 Msa1329170:five_prime_UTR
ATCTCACGTCTGTTTATGAT+TGG 0.489279 8_4:+47491953 None:intergenic
GATTATGTGTTGTGAAAGAA+AGG 0.492989 8_4:+47492693 None:intergenic
ATTCTTGGCAGCTGCGCTGA+AGG 0.503305 8_4:+47490771 None:intergenic
CAAAGTGAATGTGTGGGAAG+TGG 0.524635 8_4:+47489952 None:intergenic
CTGTTTATGATTGGTGGTCG+TGG 0.531680 8_4:+47491962 None:intergenic
AATAAATACTAATAAACATA+GGG 0.531963 8_4:+47492803 None:intergenic
AACCAGCTACGGTAGTACTA+AGG 0.531999 8_4:+47489525 None:intergenic
TGCGCTGAAGGCTTCCCTGT+GGG 0.539083 8_4:+47490783 None:intergenic
CAGATTCTGATGAAAGATGC+GGG 0.541160 8_4:-47489732 Msa1329170:CDS
AACAAAGTTGCTCGGAAGGA+GGG 0.547749 8_4:+47492535 None:intergenic
GGAAGGAGGGAGGTGGTCCA+AGG 0.549892 8_4:+47492548 None:intergenic
GAAGACAAATGTGTGCCAGC+AGG 0.553012 8_4:-47489904 Msa1329170:intron
CTGCGCTGAAGGCTTCCCTG+TGG 0.555021 8_4:+47490782 None:intergenic
GATGTTTCATACAGCAAGGA+TGG 0.571365 8_4:+47492488 None:intergenic
GAACTTGTAACTAGAAAGCA+AGG 0.573026 8_4:+47489479 None:intergenic
TAGAGATTGATGCATTAGTA+GGG 0.577948 8_4:+47489678 None:intergenic
GGATAATGTTGTGGTTGAAG+AGG 0.579637 8_4:+47492569 None:intergenic
GTCTTGAACAAGCTTGTGCA+AGG 0.580384 8_4:+47492345 None:intergenic
TAACAAAGTTGCTCGGAAGG+AGG 0.582448 8_4:+47492534 None:intergenic
GTTGCTCGGAAGGAGGGAGG+TGG 0.583306 8_4:+47492541 None:intergenic
ATTAGATAAGTAACCAGCTA+CGG 0.584275 8_4:+47489514 None:intergenic
GATTGACAGACTTAATGCGT+TGG 0.585391 8_4:+47490815 None:intergenic
ACATAACAAAGTTGCTCGGA+AGG 0.586092 8_4:+47492531 None:intergenic
AAAGTGAATGTGTGGGAAGT+GGG 0.594462 8_4:+47489953 None:intergenic
CTCATCAGCTACAGTCCTAG+TGG 0.598065 8_4:+47491988 None:intergenic
AGCAAGGATGGTGTCACAGA+TGG 0.603099 8_4:+47492500 None:intergenic
TCAATCCTGATATAACCCAC+AGG 0.603889 8_4:-47490798 Msa1329170:CDS
TCATCAGCTACAGTCCTAGT+GGG 0.606377 8_4:+47491989 None:intergenic
ATTTCTCTATGCCTCCCACT+AGG 0.608537 8_4:-47492003 Msa1329170:CDS
ACAAGTTAACCACCACACCT+TGG 0.608577 8_4:+47492657 None:intergenic
AAAGCATATCCAAGGTGTGG+TGG 0.610066 8_4:-47492666 Msa1329170:five_prime_UTR
TCAGATTCTGATGAAAGATG+CGG 0.615278 8_4:-47489733 Msa1329170:CDS
CAGAAGGTTATGATGATTTG+GGG 0.623732 8_4:+47492218 None:intergenic
GTGGACATAACAAAGTTGCT+CGG 0.624197 8_4:+47492527 None:intergenic
AGAGAAAGAAAAGGGTTCCG+TGG 0.624758 8_4:-47492836 Msa1329170:five_prime_UTR
ATGAGACCAAAGTGAATGTG+TGG 0.636661 8_4:+47489945 None:intergenic
GTCCCAAATGAAACTGATTG+GGG 0.640416 8_4:+47492253 None:intergenic
CAATCCTGATATAACCCACA+GGG 0.644329 8_4:-47490797 Msa1329170:CDS
AGGACTACTACATTATCACT+AGG 0.658383 8_4:-47489622 Msa1329170:three_prime_UTR
AAAGTTGCTCGGAAGGAGGG+AGG 0.666622 8_4:+47492538 None:intergenic
CATAGGGAACCATATTGCCA+CGG 0.673341 8_4:+47492819 None:intergenic
ATGAAGCGATTGTATGCTGA+GGG 0.673566 8_4:+47490986 None:intergenic
TCAGCTACAGTCCTAGTGGG+AGG 0.678197 8_4:+47491992 None:intergenic
TGGTGTCACAGATGGTGCAG+TGG 0.683501 8_4:+47492508 None:intergenic
AAGACTGTTACTGTGAGATG+CGG 0.688688 8_4:-47492327 Msa1329170:CDS
TGAGACCAAAGTGAATGTGT+GGG 0.708380 8_4:+47489946 None:intergenic
GTGGTCCAAGGATAATGTTG+TGG 0.713676 8_4:+47492560 None:intergenic
GATGAAGCGATTGTATGCTG+AGG 0.735800 8_4:+47490985 None:intergenic
TCCCAAATGAAACTGATTGG+GGG 0.774348 8_4:+47492254 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATAAAAATA+TGG - chr8_4:47492062-47492081 Msa1329170:CDS 0.0%
!! AATAAATACTAATAAACATA+GGG + chr8_4:47489541-47489560 None:intergenic 10.0%
!! TAATAAATACTAATAAACAT+AGG + chr8_4:47489542-47489561 None:intergenic 10.0%
!! AGTTCAAATTAATAAATTAT+GGG - chr8_4:47490539-47490558 Msa1329170:intron 10.0%
!! AAAAAAATATTTACTTTATG+TGG - chr8_4:47490641-47490660 Msa1329170:intron 10.0%
!!! GAAATTATTTATTGATTTTA+GGG - chr8_4:47490898-47490917 Msa1329170:intron 10.0%
!! TATATATTATATATGTAAGA+TGG - chr8_4:47491048-47491067 Msa1329170:intron 10.0%
!! ATATATTATATATGTAAGAT+GGG - chr8_4:47491049-47491068 Msa1329170:intron 10.0%
!! ATTCATTTATTTATAAGTTA+AGG + chr8_4:47491614-47491633 None:intergenic 10.0%
!!! ATATTGATTAAATAAAGTTA+AGG - chr8_4:47491921-47491940 Msa1329170:intron 10.0%
!! ATGTAAATATCTATAAAAAA+AGG - chr8_4:47492213-47492232 Msa1329170:intron 10.0%
!! GTTATATTTGCATAAAAAAA+TGG + chr8_4:47489939-47489958 None:intergenic 15.0%
!! CTGAAAAAAAAAAAAAATGA+AGG + chr8_4:47489967-47489986 None:intergenic 15.0%
!!! CTTCATTTTTTTTTTTTTTC+AGG - chr8_4:47489965-47489984 Msa1329170:intron 15.0%
!! TTAATGTATGGTATATAAAA+TGG + chr8_4:47490190-47490209 None:intergenic 15.0%
!! GAGTTCAAATTAATAAATTA+TGG - chr8_4:47490538-47490557 Msa1329170:intron 15.0%
!!! GGAAATTATTTATTGATTTT+AGG - chr8_4:47490897-47490916 Msa1329170:intron 15.0%
!! TATATTATATATGTAAGATG+GGG - chr8_4:47491050-47491069 Msa1329170:intron 15.0%
!! AACAGATTAATTAAATTGAA+AGG - chr8_4:47491225-47491244 Msa1329170:intron 15.0%
!!! GATTTTGATATATATGATAA+CGG - chr8_4:47491294-47491313 Msa1329170:intron 15.0%
!!! AGTTAAAAAAAAAAGTACAA+TGG + chr8_4:47491402-47491421 None:intergenic 15.0%
!! AAAAAAAAATTAAGGAGAAA+AGG - chr8_4:47491832-47491851 Msa1329170:intron 15.0%
!! CATAAAATTAATCAAGATTA+AGG + chr8_4:47492027-47492046 None:intergenic 15.0%
!!! TAGATATTTACATGTTTTAT+AGG + chr8_4:47492206-47492225 None:intergenic 15.0%
!! AATTAAGAGTAAAAAAGAAG+AGG + chr8_4:47490166-47490185 None:intergenic 20.0%
!! ATATGGTTCATCATAAAATT+TGG + chr8_4:47490304-47490323 None:intergenic 20.0%
!!! TGATCTTCTAAAATATTGTT+CGG - chr8_4:47490490-47490509 Msa1329170:intron 20.0%
!!! TAGAGACATTATATCTTTTA+GGG + chr8_4:47490799-47490818 None:intergenic 20.0%
!!! ATAGAGACATTATATCTTTT+AGG + chr8_4:47490800-47490819 None:intergenic 20.0%
!! TTCTATGATAAGCTAAATTA+AGG + chr8_4:47490863-47490882 None:intergenic 20.0%
!! AATAATACCTCATGAAAAAA+AGG - chr8_4:47491201-47491220 Msa1329170:intron 20.0%
!!! CTGTTATATTTTCATATAGT+TGG + chr8_4:47491269-47491288 None:intergenic 20.0%
!! CAACTATATGAAAATATAAC+AGG - chr8_4:47491267-47491286 Msa1329170:intron 20.0%
!! ATGTGAAGTAAATCTAAATA+CGG - chr8_4:47491483-47491502 Msa1329170:intron 20.0%
!! ATTTATAAGTTAAGGAGAAA+AGG + chr8_4:47491606-47491625 None:intergenic 20.0%
!! TAAAATTAATAACCCTAACT+TGG - chr8_4:47491667-47491686 Msa1329170:intron 20.0%
!! AAAATTAATAACCCTAACTT+GGG - chr8_4:47491668-47491687 Msa1329170:intron 20.0%
!! ACCTCTCAAAAAAAAAATTA+AGG - chr8_4:47491824-47491843 Msa1329170:intron 20.0%
!!! TCCTTAATTTTTTTTTTGAG+AGG + chr8_4:47491828-47491847 None:intergenic 20.0%
!! TAAATAAAGTTAAGGAGAAA+AGG - chr8_4:47491929-47491948 Msa1329170:intron 20.0%
!! TAATCAAGATTAAGGATAAA+AGG + chr8_4:47492019-47492038 None:intergenic 20.0%
!!! AATCATGGACTAAAAAAAAT+TGG + chr8_4:47492264-47492283 None:intergenic 20.0%
!! ACAATTCAAAATGAATGATA+TGG - chr8_4:47492305-47492324 Msa1329170:CDS 20.0%
!!! TAATGTTATGTTGATAATCA+AGG - chr8_4:47492699-47492718 Msa1329170:five_prime_UTR 20.0%
! TAAACAAAGAGAGAAAGAAA+AGG - chr8_4:47489496-47489515 Msa1329170:three_prime_UTR 25.0%
! AAACAAAGAGAGAAAGAAAA+GGG - chr8_4:47489497-47489516 Msa1329170:three_prime_UTR 25.0%
!! AATCAAAAAAAGCATATCCA+AGG - chr8_4:47489667-47489686 Msa1329170:three_prime_UTR 25.0%
!! TATATATTCGGTTTGATGAT+TGG + chr8_4:47489745-47489764 None:intergenic 25.0%
! GTTGCAAAGTAATTAATGTA+TGG + chr8_4:47490202-47490221 None:intergenic 25.0%
!!! AATCATTTGGTGCATTTATA+TGG + chr8_4:47490321-47490340 None:intergenic 25.0%
!! TTACTTTGTTTGAGTAACTT+AGG - chr8_4:47490424-47490443 Msa1329170:intron 25.0%
! TTAAAGTAAGGAATGGTTTA+AGG + chr8_4:47490766-47490785 None:intergenic 25.0%
!! TGTCCTTTTTGTTAATTTCT+CGG - chr8_4:47490960-47490979 Msa1329170:intron 25.0%
! TAAGTATCAACTGAATCATA+AGG - chr8_4:47491158-47491177 Msa1329170:intron 25.0%
!!! CAAATTTTAGTTGAAGTTGA+TGG - chr8_4:47491738-47491757 Msa1329170:intron 25.0%
!! ATTAAGGATAAAAGGTACAA+TGG + chr8_4:47492011-47492030 None:intergenic 25.0%
!!! AATCAATTTTTTTTTCTCCG+AGG - chr8_4:47492103-47492122 Msa1329170:intron 25.0%
!! GACATTTTTCACAAAGAAAA+AGG - chr8_4:47492167-47492186 Msa1329170:intron 25.0%
!! CATTTTGAATTGTTGAAACA+GGG + chr8_4:47492298-47492317 None:intergenic 25.0%
!! TCATTTTGAATTGTTGAAAC+AGG + chr8_4:47492299-47492318 None:intergenic 25.0%
!!! TATGGTTTTCTAGTTCATTT+TGG - chr8_4:47492323-47492342 Msa1329170:CDS 25.0%
! AAAGTATGTCACATATCAAA+AGG + chr8_4:47492353-47492372 None:intergenic 25.0%
! CAGAAATGAAAAAAAGTCAT+GGG + chr8_4:47492540-47492559 None:intergenic 25.0%
! TCAGAAATGAAAAAAAGTCA+TGG + chr8_4:47492541-47492560 None:intergenic 25.0%
GATTATGTGTTGTGAAAGAA+AGG + chr8_4:47489651-47489670 None:intergenic 30.0%
CTGATTGATTGATAGATAGA+TGG + chr8_4:47489710-47489729 None:intergenic 30.0%
AGAGGACGACATTATATATT+CGG + chr8_4:47489757-47489776 None:intergenic 30.0%
! AAATTGAGAGTATAACCAGA+AGG + chr8_4:47490142-47490161 None:intergenic 30.0%
! TCTAAGTAGTATAGCTTTTG+TGG - chr8_4:47490227-47490246 Msa1329170:intron 30.0%
!!! CATTTTTTTTTTCTTGCAGC+AGG - chr8_4:47490258-47490277 Msa1329170:intron 30.0%
! TCATCATAAAATTTGGAGCT+GGG + chr8_4:47490297-47490316 None:intergenic 30.0%
! TTCATCATAAAATTTGGAGC+TGG + chr8_4:47490298-47490317 None:intergenic 30.0%
!!! AAAACCATCGTTTTGATTGA+GGG + chr8_4:47490453-47490472 None:intergenic 30.0%
!!! AAAAACCATCGTTTTGATTG+AGG + chr8_4:47490454-47490473 None:intergenic 30.0%
!! CTTCTAAAATATTGTTCGGT+TGG - chr8_4:47490494-47490513 Msa1329170:intron 30.0%
! TTTATGTGGTTGCTATTGAT+TGG - chr8_4:47490655-47490674 Msa1329170:intron 30.0%
! TTCCACTTTCTTTTGGTAAA+AGG - chr8_4:47490707-47490726 Msa1329170:intron 30.0%
! TTCCTTTTACCAAAAGAAAG+TGG + chr8_4:47490712-47490731 None:intergenic 30.0%
! ACTTTCTTTTGGTAAAAGGA+AGG - chr8_4:47490711-47490730 Msa1329170:intron 30.0%
! AAAAGGAAGGAAGTCTTTTA+TGG - chr8_4:47490724-47490743 Msa1329170:intron 30.0%
ATGTCTCTATAAGTAATGAC+AGG - chr8_4:47490810-47490829 Msa1329170:CDS 30.0%
CATAGAACAGTTTGTAATAC+TGG - chr8_4:47490876-47490895 Msa1329170:intron 30.0%
GTACCGAGAAATTAACAAAA+AGG + chr8_4:47490966-47490985 None:intergenic 30.0%
ATAGAGATGAAAGCAAACTT+AGG - chr8_4:47490998-47491017 Msa1329170:CDS 30.0%
! TGGTGGATAGAAAAAAGATA+GGG - chr8_4:47491081-47491100 Msa1329170:intron 30.0%
TTTAAACAACTACTATTCCG+GGG + chr8_4:47491120-47491139 None:intergenic 30.0%
CTTTAAACAACTACTATTCC+GGG + chr8_4:47491121-47491140 None:intergenic 30.0%
! GCTTTAAACAACTACTATTC+CGG + chr8_4:47491122-47491141 None:intergenic 30.0%
!!! TCTGTTACCTTTTTTTCATG+AGG + chr8_4:47491211-47491230 None:intergenic 30.0%
TATAAGTTAAGGAGAAAAGG+AGG + chr8_4:47491603-47491622 None:intergenic 30.0%
!! AACATTTTTCAGCGAGAATA+GGG + chr8_4:47492487-47492506 None:intergenic 30.0%
!! AAACATTTTTCAGCGAGAAT+AGG + chr8_4:47492488-47492507 None:intergenic 30.0%
TGTATCATTCTTCTTTATCC+AGG - chr8_4:47492575-47492594 Msa1329170:CDS 30.0%
! TTTTATGCTTCTGCTAATCT+TGG - chr8_4:47492633-47492652 Msa1329170:five_prime_UTR 30.0%
TAGAGATTGATGCATTAGTA+GGG + chr8_4:47492666-47492685 None:intergenic 30.0%
ATAGAGATTGATGCATTAGT+AGG + chr8_4:47492667-47492686 None:intergenic 30.0%
GGTAGTACTAAGGAAATTAA+AGG + chr8_4:47492809-47492828 None:intergenic 30.0%
ATTAGATAAGTAACCAGCTA+CGG + chr8_4:47492830-47492849 None:intergenic 30.0%
! AAAAAAGCATATCCAAGGTG+TGG - chr8_4:47489672-47489691 Msa1329170:three_prime_UTR 35.0%
TTCAACCACAACATTATCCT+TGG - chr8_4:47489776-47489795 Msa1329170:intron 35.0%
TAGTGATGTTTCATACAGCA+AGG + chr8_4:47489860-47489879 None:intergenic 35.0%
! TAAGCTAGTGTTGAAAAGTG+GGG + chr8_4:47489899-47489918 None:intergenic 35.0%
! CTAAGCTAGTGTTGAAAAGT+GGG + chr8_4:47489900-47489919 None:intergenic 35.0%
!! TTTTCAACACTAGCTTAGCT+AGG - chr8_4:47489902-47489921 Msa1329170:intron 35.0%
! TTTCAACACTAGCTTAGCTA+GGG - chr8_4:47489903-47489922 Msa1329170:intron 35.0%
TGTCCCAAATGAAACTGATT+GGG + chr8_4:47490092-47490111 None:intergenic 35.0%
CAGAAGGTTATGATGATTTG+GGG + chr8_4:47490126-47490145 None:intergenic 35.0%
CCAGAAGGTTATGATGATTT+GGG + chr8_4:47490127-47490146 None:intergenic 35.0%
ACCAGAAGGTTATGATGATT+TGG + chr8_4:47490128-47490147 None:intergenic 35.0%
!!! TTTTTTTTTCTTGCAGCAGG+AGG - chr8_4:47490261-47490280 Msa1329170:intron 35.0%
! ATAAAATTTGGAGCTGGGTT+TGG + chr8_4:47490292-47490311 None:intergenic 35.0%
ATCTCACGTCTGTTTATGAT+TGG + chr8_4:47490391-47490410 None:intergenic 35.0%
!! GCACACTTTAAAGTAAGGAA+TGG + chr8_4:47490773-47490792 None:intergenic 35.0%
TTGCTTTCATCTCTATATGC+TGG + chr8_4:47490994-47491013 None:intergenic 35.0%
TGTAAGATGGGGAAAATATG+TGG - chr8_4:47491061-47491080 Msa1329170:intron 35.0%
!! GTGGTGGATAGAAAAAAGAT+AGG - chr8_4:47491080-47491099 Msa1329170:intron 35.0%
TTAAACAACTACTATTCCGG+GGG + chr8_4:47491119-47491138 None:intergenic 35.0%
AAAGGAGGATCATACATTCT+TGG + chr8_4:47491588-47491607 None:intergenic 35.0%
! GGGTTCAAGATCTGAATTTT+CGG - chr8_4:47491688-47491707 Msa1329170:intron 35.0%
TGCTATGATAATTTACCTGC+TGG + chr8_4:47492455-47492474 None:intergenic 35.0%
!! ACATTTTTCAGCGAGAATAG+GGG + chr8_4:47492486-47492505 None:intergenic 35.0%
TCATTCTTCTTTATCCAGGA+AGG - chr8_4:47492579-47492598 Msa1329170:CDS 35.0%
TCAGATTCTGATGAAAGATG+CGG - chr8_4:47492608-47492627 Msa1329170:five_prime_UTR 35.0%
AGGACTACTACATTATCACT+AGG - chr8_4:47492719-47492738 Msa1329170:five_prime_UTR 35.0%
! TTATCACTAGGTAGCTCTTT+TGG - chr8_4:47492731-47492750 Msa1329170:five_prime_UTR 35.0%
! TATCACTAGGTAGCTCTTTT+GGG - chr8_4:47492732-47492751 Msa1329170:five_prime_UTR 35.0%
GGATAATGTTGTGGTTGAAG+AGG + chr8_4:47489775-47489794 None:intergenic 40.0%
ACATAACAAAGTTGCTCGGA+AGG + chr8_4:47489813-47489832 None:intergenic 40.0%
GTGGACATAACAAAGTTGCT+CGG + chr8_4:47489817-47489836 None:intergenic 40.0%
GATGTTTCATACAGCAAGGA+TGG + chr8_4:47489856-47489875 None:intergenic 40.0%
! GCTAAGCTAGTGTTGAAAAG+TGG + chr8_4:47489901-47489920 None:intergenic 40.0%
AAGACTGTTACTGTGAGATG+CGG - chr8_4:47490014-47490033 Msa1329170:intron 40.0%
AAATGAAACTGATTGGGGGA+TGG + chr8_4:47490086-47490105 None:intergenic 40.0%
ATCCCCCAATCAGTTTCATT+TGG - chr8_4:47490085-47490104 Msa1329170:intron 40.0%
TCCCCCAATCAGTTTCATTT+GGG - chr8_4:47490086-47490105 Msa1329170:intron 40.0%
TCCCAAATGAAACTGATTGG+GGG + chr8_4:47490090-47490109 None:intergenic 40.0%
GTCCCAAATGAAACTGATTG+GGG + chr8_4:47490091-47490110 None:intergenic 40.0%
GTGTCCCAAATGAAACTGAT+TGG + chr8_4:47490093-47490112 None:intergenic 40.0%
CCCAAATCATCATAACCTTC+TGG - chr8_4:47490124-47490143 Msa1329170:intron 40.0%
! GGAGGCATAGAGAAATCATT+TGG + chr8_4:47490334-47490353 None:intergenic 40.0%
TCACGTCTGTTTATGATTGG+TGG + chr8_4:47490388-47490407 None:intergenic 40.0%
GTTTCCCTCAATCAAAACGA+TGG - chr8_4:47490446-47490465 Msa1329170:intron 40.0%
! TTGATTGGACAGTGTTGTTG+AGG - chr8_4:47490670-47490689 Msa1329170:intron 40.0%
AGAAAGTGGAACAAGACCAA+GGG + chr8_4:47490698-47490717 None:intergenic 40.0%
AAGAAAGTGGAACAAGACCA+AGG + chr8_4:47490699-47490718 None:intergenic 40.0%
!!! GGTCTTGTTCCACTTTCTTT+TGG - chr8_4:47490700-47490719 Msa1329170:intron 40.0%
!! GGCATGCACACTTTAAAGTA+AGG + chr8_4:47490778-47490797 None:intergenic 40.0%
AAACAAAGCCTCGTGAAGAA+GGG + chr8_4:47490929-47490948 None:intergenic 40.0%
AAAACAAAGCCTCGTGAAGA+AGG + chr8_4:47490930-47490949 None:intergenic 40.0%
AAGATGGGGAAAATATGTGG+TGG - chr8_4:47491064-47491083 Msa1329170:intron 40.0%
ATGAAGCGATTGTATGCTGA+GGG + chr8_4:47491358-47491377 None:intergenic 40.0%
GATTGACAGACTTAATGCGT+TGG + chr8_4:47491529-47491548 None:intergenic 40.0%
TCAATCCTGATATAACCCAC+AGG - chr8_4:47491543-47491562 Msa1329170:intron 40.0%
CAATCCTGATATAACCCACA+GGG - chr8_4:47491544-47491563 Msa1329170:intron 40.0%
CAGATCTTGAACCCAAGTTA+GGG + chr8_4:47491682-47491701 None:intergenic 40.0%
TCAGATCTTGAACCCAAGTT+AGG + chr8_4:47491683-47491702 None:intergenic 40.0%
!! TTGAAGTTGATGGTTCTCCT+CGG - chr8_4:47491748-47491767 Msa1329170:intron 40.0%
AAGGAGAAAAGGATGCTCTT+TGG - chr8_4:47491843-47491862 Msa1329170:intron 40.0%
TGAATTGTTGAAACAGGGCA+GGG + chr8_4:47492293-47492312 None:intergenic 40.0%
TTGAATTGTTGAAACAGGGC+AGG + chr8_4:47492294-47492313 None:intergenic 40.0%
ACATACTTTCTGTGTGACAG+TGG - chr8_4:47492364-47492383 Msa1329170:intron 40.0%
CATACTTTCTGTGTGACAGT+GGG - chr8_4:47492365-47492384 Msa1329170:intron 40.0%
AAAGTGAATGTGTGGGAAGT+GGG + chr8_4:47492391-47492410 None:intergenic 40.0%
TGAGACCAAAGTGAATGTGT+GGG + chr8_4:47492398-47492417 None:intergenic 40.0%
ATGAGACCAAAGTGAATGTG+TGG + chr8_4:47492399-47492418 None:intergenic 40.0%
GTCTTCTTCATAGTCTGATC+AGG + chr8_4:47492423-47492442 None:intergenic 40.0%
CAGATTCTGATGAAAGATGC+GGG - chr8_4:47492609-47492628 Msa1329170:five_prime_UTR 40.0%
AGAGAAAGAAAAGGGTTCCG+TGG - chr8_4:47489505-47489524 Msa1329170:three_prime_UTR 45.0%
AAAAGGGTTCCGTGGCAATA+TGG - chr8_4:47489513-47489532 Msa1329170:three_prime_UTR 45.0%
CATAGGGAACCATATTGCCA+CGG + chr8_4:47489525-47489544 None:intergenic 45.0%
AAAGCATATCCAAGGTGTGG+TGG - chr8_4:47489675-47489694 Msa1329170:exon 45.0%
ACAAGTTAACCACCACACCT+TGG + chr8_4:47489687-47489706 None:intergenic 45.0%
GTGGTCCAAGGATAATGTTG+TGG + chr8_4:47489784-47489803 None:intergenic 45.0%
AACAAAGTTGCTCGGAAGGA+GGG + chr8_4:47489809-47489828 None:intergenic 45.0%
TAACAAAGTTGCTCGGAAGG+AGG + chr8_4:47489810-47489829 None:intergenic 45.0%
! CTAGTGTTGAAAAGTGGGGA+TGG + chr8_4:47489895-47489914 None:intergenic 45.0%
GTCTTGAACAAGCTTGTGCA+AGG + chr8_4:47489999-47490018 None:intergenic 45.0%
AGTAATGCACGCATGTTGAC+TGG + chr8_4:47490059-47490078 None:intergenic 45.0%
ATTTCTCTATGCCTCCCACT+AGG - chr8_4:47490338-47490357 Msa1329170:intron 45.0%
TCATCAGCTACAGTCCTAGT+GGG + chr8_4:47490355-47490374 None:intergenic 45.0%
! CTGTTTATGATTGGTGGTCG+TGG + chr8_4:47490382-47490401 None:intergenic 45.0%
! GGAACTCTCTGTCTTTTCTC+TGG + chr8_4:47491337-47491356 None:intergenic 45.0%
GATGAAGCGATTGTATGCTG+AGG + chr8_4:47491359-47491378 None:intergenic 45.0%
TCTAAATACGGTCCATCTGC+AGG - chr8_4:47491495-47491514 Msa1329170:intron 45.0%
CTAAATACGGTCCATCTGCA+GGG - chr8_4:47491496-47491515 Msa1329170:intron 45.0%
TTCTCCGAGGTTTGCATACT+CGG - chr8_4:47492116-47492135 Msa1329170:intron 45.0%
TAAGCCGAGTATGCAAACCT+CGG + chr8_4:47492123-47492142 None:intergenic 45.0%
AGGGCAGGGAAATACAATCA+TGG + chr8_4:47492279-47492298 None:intergenic 45.0%
CAAAGTGAATGTGTGGGAAG+TGG + chr8_4:47492392-47492411 None:intergenic 45.0%
CACTTCCCACACATTCACTT+TGG - chr8_4:47492390-47492409 Msa1329170:intron 45.0%
GAATCTGATCATCTCCTTCC+TGG + chr8_4:47492596-47492615 None:intergenic 45.0%
TTCCTTAGTACTACCGTAGC+TGG - chr8_4:47492814-47492833 Msa1329170:five_prime_UTR 45.0%
AACCAGCTACGGTAGTACTA+AGG + chr8_4:47492819-47492838 None:intergenic 45.0%
!! AGCAAGGATGGTGTCACAGA+TGG + chr8_4:47489844-47489863 None:intergenic 50.0%
CTCATCAGCTACAGTCCTAG+TGG + chr8_4:47490356-47490375 None:intergenic 50.0%
! CAGTGTTGTTGAGGTACCCT+TGG - chr8_4:47490679-47490698 Msa1329170:intron 50.0%
!! AGGGTACTTTTCTTCTCCCC+CGG - chr8_4:47491100-47491119 Msa1329170:intron 50.0%
!!! CTCTGTCTTTTCTCTGGAGC+TGG + chr8_4:47491331-47491350 None:intergenic 50.0%
! GCTTCCCTGTGGGTTATATC+AGG + chr8_4:47491551-47491570 None:intergenic 50.0%
GTGAGAGACACTCATTACCG+AGG + chr8_4:47491768-47491787 None:intergenic 50.0%
GAAGACAAATGTGTGCCAGC+AGG - chr8_4:47492437-47492456 Msa1329170:intron 50.0%
AAAGTTGCTCGGAAGGAGGG+AGG + chr8_4:47489806-47489825 None:intergenic 55.0%
!! TGGTGTCACAGATGGTGCAG+TGG + chr8_4:47489836-47489855 None:intergenic 55.0%
TCAGCTACAGTCCTAGTGGG+AGG + chr8_4:47490352-47490371 None:intergenic 55.0%
TTGGATCTCGTCCCTGCAGA+TGG + chr8_4:47491510-47491529 None:intergenic 55.0%
ATTCTTGGCAGCTGCGCTGA+AGG + chr8_4:47491573-47491592 None:intergenic 55.0%
TGCGCTGAAGGCTTCCCTGT+GGG + chr8_4:47491561-47491580 None:intergenic 60.0%
GGAAGGAGGGAGGTGGTCCA+AGG + chr8_4:47489796-47489815 None:intergenic 65.0%
GTTGCTCGGAAGGAGGGAGG+TGG + chr8_4:47489803-47489822 None:intergenic 65.0%
GGGCACAGCCCTTCTTCACG+AGG - chr8_4:47490918-47490937 Msa1329170:intron 65.0%
CTGCGCTGAAGGCTTCCCTG+TGG + chr8_4:47491562-47491581 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 47489484 47492879 47489484 ID=Msa1329170;Name=Msa1329170
chr8_4 mRNA 47489484 47492879 47489484 ID=Msa1329170-mRNA-1;Parent=Msa1329170;Name=Msa1329170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=281|1|1|1|1|1|7|208|219
chr8_4 exon 47489484 47489766 47489484 ID=Msa1329170-mRNA-1:exon:13650;Parent=Msa1329170-mRNA-1
chr8_4 exon 47489905 47489979 47489905 ID=Msa1329170-mRNA-1:exon:13649;Parent=Msa1329170-mRNA-1
chr8_4 exon 47490771 47490846 47490771 ID=Msa1329170-mRNA-1:exon:13648;Parent=Msa1329170-mRNA-1
chr8_4 exon 47490983 47491031 47490983 ID=Msa1329170-mRNA-1:exon:13647;Parent=Msa1329170-mRNA-1
chr8_4 exon 47491960 47492086 47491960 ID=Msa1329170-mRNA-1:exon:13646;Parent=Msa1329170-mRNA-1
chr8_4 exon 47492218 47492376 47492218 ID=Msa1329170-mRNA-1:exon:13645;Parent=Msa1329170-mRNA-1
chr8_4 exon 47492500 47492879 47492500 ID=Msa1329170-mRNA-1:exon:13644;Parent=Msa1329170-mRNA-1
chr8_4 five_prime_UTR 47492599 47492879 47492599 ID=Msa1329170-mRNA-1:five_prime_utr;Parent=Msa1329170-mRNA-1
chr8_4 CDS 47492500 47492598 47492500 ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1
chr8_4 CDS 47492218 47492376 47492218 ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1
chr8_4 CDS 47491960 47492086 47491960 ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1
chr8_4 CDS 47490983 47491031 47490983 ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1
chr8_4 CDS 47490771 47490846 47490771 ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1
chr8_4 CDS 47489905 47489979 47489905 ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1
chr8_4 CDS 47489692 47489766 47489692 ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1
chr8_4 three_prime_UTR 47489484 47489691 47489484 ID=Msa1329170-mRNA-1:three_prime_utr;Parent=Msa1329170-mRNA-1
Gene Sequence

>Msa1329170

ATGTCGTCCTCTTCAACCACAACATTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTCCACTGCACCATCTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACTGTGAGATGCGGTCATTGCACTAATCTGCTTCCAGTCAACATGCGTGCATTACTTCTGCCATCCCCCAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAAATCATCATAACCTTCTGCAGGAGGAGATGCCAAACCCAGCTCCAAATTTTATGATGAACCATATAAATGCACCAAATGATTTCTCTATGCCTCCCACTAGGACTGTAGCTGATGAGCTTCCACGACCACCAATCATAAACAGACCTCCAGAGAAAAGACAGAGAGTTCCCTCAGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGATGATCAGATTCTGATGAAAGATGCGGGATTTTATGCTTCTGCTAATCTTGGTGTTTCGCCCTACTAA

Protein sequence

>Msa1329170

MSSSSTTTLSLDHLPPSEQLCYVHCTICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPNHHNLLQEEMPNPAPNFMMNHINAPNDFSMPPTRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGDDQILMKDAGFYASANLGVSPY*