Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1329170 | sp|O22152|YAB1_ARATH | 61.009 | 218 | 74 | 6 | 10 | 219 | 15 | 229 | 2.55e-81 | 245 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1329170 | G7JK46 | 98.630 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 1.20e-158 | 446 |
Gene ID | Type | Classification |
---|---|---|
Msa1329170 | TF | C2C2-YABBY |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0052460 | Msa1329170 | 0.810954 | 8.913523e-51 | -8.615850e-47 |
Msa0097050 | Msa1329170 | 0.801134 | 1.039340e-48 | -8.615850e-47 |
Msa0641620 | Msa1329170 | 0.856277 | 3.586670e-62 | -8.615850e-47 |
Msa0648180 | Msa1329170 | 0.806719 | 7.174396e-50 | -8.615850e-47 |
Msa0184070 | Msa1329170 | 0.857841 | 1.239596e-62 | -8.615850e-47 |
Msa1257730 | Msa1329170 | 0.837596 | 4.735559e-57 | -8.615850e-47 |
Msa1257770 | Msa1329170 | 0.893741 | 4.739210e-75 | -8.615850e-47 |
Msa1329170 | Msa1341340 | 0.844195 | 8.787305e-59 | -8.615850e-47 |
Msa1329170 | Msa1421810 | 0.821046 | 4.972630e-53 | -8.615850e-47 |
Msa1329170 | Msa1450530 | 0.998884 | 2.145512e-280 | -8.615850e-47 |
Msa0418480 | Msa1329170 | 0.834305 | 3.236999e-56 | -8.615850e-47 |
Msa0465860 | Msa1329170 | 0.821672 | 3.564374e-53 | -8.615850e-47 |
Msa1129920 | Msa1329170 | 0.852571 | 4.230810e-61 | -8.615850e-47 |
Msa1207830 | Msa1329170 | 0.901701 | 2.052399e-78 | -8.615850e-47 |
Msa0510230 | Msa1329170 | 0.832105 | 1.142859e-55 | -8.615850e-47 |
Msa0601110 | Msa1329170 | 0.850005 | 2.245983e-60 | -8.615850e-47 |
Msa0601120 | Msa1329170 | 0.846482 | 2.112154e-59 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1329170 | MtrunA17_Chr4g0056521 | 98.630 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 2.31e-162 | 446 |
Msa1329170 | MtrunA17_Chr4g0011841 | 70.792 | 202 | 52 | 5 | 20 | 219 | 25 | 221 | 4.00e-90 | 264 |
Msa1329170 | MtrunA17_Chr2g0322221 | 49.510 | 204 | 91 | 6 | 8 | 209 | 2 | 195 | 1.52e-56 | 178 |
Msa1329170 | MtrunA17_Chr4g0063931 | 53.333 | 180 | 64 | 5 | 7 | 182 | 2 | 165 | 3.88e-55 | 174 |
Msa1329170 | MtrunA17_Chr4g0025361 | 49.010 | 202 | 77 | 7 | 9 | 209 | 1 | 177 | 8.81e-50 | 160 |
Msa1329170 | MtrunA17_Chr5g0413381 | 49.686 | 159 | 71 | 4 | 18 | 175 | 12 | 162 | 7.19e-46 | 150 |
Msa1329170 | MtrunA17_Chr5g0419871 | 41.317 | 167 | 79 | 3 | 9 | 174 | 7 | 155 | 4.97e-34 | 119 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1329170 | AT2G45190.1 | 61.009 | 218 | 74 | 6 | 10 | 219 | 15 | 229 | 2.60e-82 | 245 |
Msa1329170 | AT4G00180.1 | 61.504 | 226 | 63 | 10 | 12 | 217 | 17 | 238 | 1.68e-73 | 223 |
Msa1329170 | AT4G00180.2 | 60.190 | 211 | 60 | 10 | 27 | 217 | 1 | 207 | 3.55e-62 | 193 |
Msa1329170 | AT2G26580.2 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.63e-56 | 177 |
Msa1329170 | AT2G26580.1 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.63e-56 | 177 |
Msa1329170 | AT1G08465.1 | 50.515 | 194 | 79 | 4 | 17 | 209 | 7 | 184 | 6.44e-55 | 174 |
Msa1329170 | AT2G45190.2 | 57.143 | 168 | 61 | 6 | 60 | 219 | 1 | 165 | 3.73e-54 | 171 |
Msa1329170 | AT1G23420.1 | 46.286 | 175 | 90 | 3 | 6 | 178 | 8 | 180 | 6.59e-39 | 134 |
Msa1329170 | AT1G23420.2 | 46.286 | 175 | 90 | 3 | 6 | 178 | 39 | 211 | 3.60e-38 | 133 |
Msa1329170 | AT1G69180.1 | 45.000 | 160 | 69 | 3 | 15 | 174 | 16 | 156 | 6.32e-34 | 120 |
Find 79 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATGGTTCATCATAAAATT+TGG | 0.162315 | 8_4:+47492040 | None:intergenic |
AATCATTTGGTGCATTTATA+TGG | 0.220470 | 8_4:+47492023 | None:intergenic |
TTATCACTAGGTAGCTCTTT+TGG | 0.238958 | 8_4:-47489610 | Msa1329170:three_prime_UTR |
ACCAGAAGGTTATGATGATT+TGG | 0.269243 | 8_4:+47492216 | None:intergenic |
GGTAGTACTAAGGAAATTAA+AGG | 0.299349 | 8_4:+47489535 | None:intergenic |
CCAGAAGGTTATGATGATTT+GGG | 0.306156 | 8_4:+47492217 | None:intergenic |
TATATATTCGGTTTGATGAT+TGG | 0.328788 | 8_4:+47492599 | None:intergenic |
ATAAAATTTGGAGCTGGGTT+TGG | 0.340235 | 8_4:+47492052 | None:intergenic |
GCTTCCCTGTGGGTTATATC+AGG | 0.345088 | 8_4:+47490793 | None:intergenic |
CCCAAATCATCATAACCTTC+TGG | 0.358123 | 8_4:-47492217 | Msa1329170:intron |
AGAGGACGACATTATATATT+CGG | 0.359434 | 8_4:+47492587 | None:intergenic |
GTCTTCTTCATAGTCTGATC+AGG | 0.388325 | 8_4:+47489921 | None:intergenic |
ATAGAGATTGATGCATTAGT+AGG | 0.390762 | 8_4:+47489677 | None:intergenic |
AAAAGGGTTCCGTGGCAATA+TGG | 0.396523 | 8_4:-47492828 | Msa1329170:five_prime_UTR |
CTGATTGATTGATAGATAGA+TGG | 0.429694 | 8_4:+47492634 | None:intergenic |
CACTTCCCACACATTCACTT+TGG | 0.432093 | 8_4:-47489951 | Msa1329170:CDS |
TGTCCCAAATGAAACTGATT+GGG | 0.435332 | 8_4:+47492252 | None:intergenic |
TTCCTTAGTACTACCGTAGC+TGG | 0.442078 | 8_4:-47489527 | Msa1329170:three_prime_UTR |
TTCAACCACAACATTATCCT+TGG | 0.449974 | 8_4:-47492565 | Msa1329170:CDS |
TAAACAAAGAGAGAAAGAAA+AGG | 0.467919 | 8_4:-47492845 | Msa1329170:five_prime_UTR |
GTGTCCCAAATGAAACTGAT+TGG | 0.468609 | 8_4:+47492251 | None:intergenic |
AAAGGAGGATCATACATTCT+TGG | 0.469847 | 8_4:+47490756 | None:intergenic |
AGTAATGCACGCATGTTGAC+TGG | 0.472196 | 8_4:+47492285 | None:intergenic |
TTCATCATAAAATTTGGAGC+TGG | 0.473136 | 8_4:+47492046 | None:intergenic |
TAATGTTATGTTGATAATCA+AGG | 0.477535 | 8_4:-47489642 | Msa1329170:three_prime_UTR |
GGAGGCATAGAGAAATCATT+TGG | 0.480020 | 8_4:+47492010 | None:intergenic |
TAATAAATACTAATAAACAT+AGG | 0.480258 | 8_4:+47492802 | None:intergenic |
TCACGTCTGTTTATGATTGG+TGG | 0.480315 | 8_4:+47491956 | None:intergenic |
TCATCATAAAATTTGGAGCT+GGG | 0.482099 | 8_4:+47492047 | None:intergenic |
AAACAAAGAGAGAAAGAAAA+GGG | 0.485188 | 8_4:-47492844 | Msa1329170:five_prime_UTR |
ATCTCACGTCTGTTTATGAT+TGG | 0.489279 | 8_4:+47491953 | None:intergenic |
GATTATGTGTTGTGAAAGAA+AGG | 0.492989 | 8_4:+47492693 | None:intergenic |
ATTCTTGGCAGCTGCGCTGA+AGG | 0.503305 | 8_4:+47490771 | None:intergenic |
CAAAGTGAATGTGTGGGAAG+TGG | 0.524635 | 8_4:+47489952 | None:intergenic |
CTGTTTATGATTGGTGGTCG+TGG | 0.531680 | 8_4:+47491962 | None:intergenic |
AATAAATACTAATAAACATA+GGG | 0.531963 | 8_4:+47492803 | None:intergenic |
AACCAGCTACGGTAGTACTA+AGG | 0.531999 | 8_4:+47489525 | None:intergenic |
TGCGCTGAAGGCTTCCCTGT+GGG | 0.539083 | 8_4:+47490783 | None:intergenic |
CAGATTCTGATGAAAGATGC+GGG | 0.541160 | 8_4:-47489732 | Msa1329170:CDS |
AACAAAGTTGCTCGGAAGGA+GGG | 0.547749 | 8_4:+47492535 | None:intergenic |
GGAAGGAGGGAGGTGGTCCA+AGG | 0.549892 | 8_4:+47492548 | None:intergenic |
GAAGACAAATGTGTGCCAGC+AGG | 0.553012 | 8_4:-47489904 | Msa1329170:intron |
CTGCGCTGAAGGCTTCCCTG+TGG | 0.555021 | 8_4:+47490782 | None:intergenic |
GATGTTTCATACAGCAAGGA+TGG | 0.571365 | 8_4:+47492488 | None:intergenic |
GAACTTGTAACTAGAAAGCA+AGG | 0.573026 | 8_4:+47489479 | None:intergenic |
TAGAGATTGATGCATTAGTA+GGG | 0.577948 | 8_4:+47489678 | None:intergenic |
GGATAATGTTGTGGTTGAAG+AGG | 0.579637 | 8_4:+47492569 | None:intergenic |
GTCTTGAACAAGCTTGTGCA+AGG | 0.580384 | 8_4:+47492345 | None:intergenic |
TAACAAAGTTGCTCGGAAGG+AGG | 0.582448 | 8_4:+47492534 | None:intergenic |
GTTGCTCGGAAGGAGGGAGG+TGG | 0.583306 | 8_4:+47492541 | None:intergenic |
ATTAGATAAGTAACCAGCTA+CGG | 0.584275 | 8_4:+47489514 | None:intergenic |
GATTGACAGACTTAATGCGT+TGG | 0.585391 | 8_4:+47490815 | None:intergenic |
ACATAACAAAGTTGCTCGGA+AGG | 0.586092 | 8_4:+47492531 | None:intergenic |
AAAGTGAATGTGTGGGAAGT+GGG | 0.594462 | 8_4:+47489953 | None:intergenic |
CTCATCAGCTACAGTCCTAG+TGG | 0.598065 | 8_4:+47491988 | None:intergenic |
AGCAAGGATGGTGTCACAGA+TGG | 0.603099 | 8_4:+47492500 | None:intergenic |
TCAATCCTGATATAACCCAC+AGG | 0.603889 | 8_4:-47490798 | Msa1329170:CDS |
TCATCAGCTACAGTCCTAGT+GGG | 0.606377 | 8_4:+47491989 | None:intergenic |
ATTTCTCTATGCCTCCCACT+AGG | 0.608537 | 8_4:-47492003 | Msa1329170:CDS |
ACAAGTTAACCACCACACCT+TGG | 0.608577 | 8_4:+47492657 | None:intergenic |
AAAGCATATCCAAGGTGTGG+TGG | 0.610066 | 8_4:-47492666 | Msa1329170:five_prime_UTR |
TCAGATTCTGATGAAAGATG+CGG | 0.615278 | 8_4:-47489733 | Msa1329170:CDS |
CAGAAGGTTATGATGATTTG+GGG | 0.623732 | 8_4:+47492218 | None:intergenic |
GTGGACATAACAAAGTTGCT+CGG | 0.624197 | 8_4:+47492527 | None:intergenic |
AGAGAAAGAAAAGGGTTCCG+TGG | 0.624758 | 8_4:-47492836 | Msa1329170:five_prime_UTR |
ATGAGACCAAAGTGAATGTG+TGG | 0.636661 | 8_4:+47489945 | None:intergenic |
GTCCCAAATGAAACTGATTG+GGG | 0.640416 | 8_4:+47492253 | None:intergenic |
CAATCCTGATATAACCCACA+GGG | 0.644329 | 8_4:-47490797 | Msa1329170:CDS |
AGGACTACTACATTATCACT+AGG | 0.658383 | 8_4:-47489622 | Msa1329170:three_prime_UTR |
AAAGTTGCTCGGAAGGAGGG+AGG | 0.666622 | 8_4:+47492538 | None:intergenic |
CATAGGGAACCATATTGCCA+CGG | 0.673341 | 8_4:+47492819 | None:intergenic |
ATGAAGCGATTGTATGCTGA+GGG | 0.673566 | 8_4:+47490986 | None:intergenic |
TCAGCTACAGTCCTAGTGGG+AGG | 0.678197 | 8_4:+47491992 | None:intergenic |
TGGTGTCACAGATGGTGCAG+TGG | 0.683501 | 8_4:+47492508 | None:intergenic |
AAGACTGTTACTGTGAGATG+CGG | 0.688688 | 8_4:-47492327 | Msa1329170:CDS |
TGAGACCAAAGTGAATGTGT+GGG | 0.708380 | 8_4:+47489946 | None:intergenic |
GTGGTCCAAGGATAATGTTG+TGG | 0.713676 | 8_4:+47492560 | None:intergenic |
GATGAAGCGATTGTATGCTG+AGG | 0.735800 | 8_4:+47490985 | None:intergenic |
TCCCAAATGAAACTGATTGG+GGG | 0.774348 | 8_4:+47492254 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAATAAATAAATAAAAATA+TGG | - | chr8_4:47492062-47492081 | Msa1329170:CDS | 0.0% |
!! | AATAAATACTAATAAACATA+GGG | + | chr8_4:47489541-47489560 | None:intergenic | 10.0% |
!! | TAATAAATACTAATAAACAT+AGG | + | chr8_4:47489542-47489561 | None:intergenic | 10.0% |
!! | AGTTCAAATTAATAAATTAT+GGG | - | chr8_4:47490539-47490558 | Msa1329170:intron | 10.0% |
!! | AAAAAAATATTTACTTTATG+TGG | - | chr8_4:47490641-47490660 | Msa1329170:intron | 10.0% |
!!! | GAAATTATTTATTGATTTTA+GGG | - | chr8_4:47490898-47490917 | Msa1329170:intron | 10.0% |
!! | TATATATTATATATGTAAGA+TGG | - | chr8_4:47491048-47491067 | Msa1329170:intron | 10.0% |
!! | ATATATTATATATGTAAGAT+GGG | - | chr8_4:47491049-47491068 | Msa1329170:intron | 10.0% |
!! | ATTCATTTATTTATAAGTTA+AGG | + | chr8_4:47491614-47491633 | None:intergenic | 10.0% |
!!! | ATATTGATTAAATAAAGTTA+AGG | - | chr8_4:47491921-47491940 | Msa1329170:intron | 10.0% |
!! | ATGTAAATATCTATAAAAAA+AGG | - | chr8_4:47492213-47492232 | Msa1329170:intron | 10.0% |
!! | GTTATATTTGCATAAAAAAA+TGG | + | chr8_4:47489939-47489958 | None:intergenic | 15.0% |
!! | CTGAAAAAAAAAAAAAATGA+AGG | + | chr8_4:47489967-47489986 | None:intergenic | 15.0% |
!!! | CTTCATTTTTTTTTTTTTTC+AGG | - | chr8_4:47489965-47489984 | Msa1329170:intron | 15.0% |
!! | TTAATGTATGGTATATAAAA+TGG | + | chr8_4:47490190-47490209 | None:intergenic | 15.0% |
!! | GAGTTCAAATTAATAAATTA+TGG | - | chr8_4:47490538-47490557 | Msa1329170:intron | 15.0% |
!!! | GGAAATTATTTATTGATTTT+AGG | - | chr8_4:47490897-47490916 | Msa1329170:intron | 15.0% |
!! | TATATTATATATGTAAGATG+GGG | - | chr8_4:47491050-47491069 | Msa1329170:intron | 15.0% |
!! | AACAGATTAATTAAATTGAA+AGG | - | chr8_4:47491225-47491244 | Msa1329170:intron | 15.0% |
!!! | GATTTTGATATATATGATAA+CGG | - | chr8_4:47491294-47491313 | Msa1329170:intron | 15.0% |
!!! | AGTTAAAAAAAAAAGTACAA+TGG | + | chr8_4:47491402-47491421 | None:intergenic | 15.0% |
!! | AAAAAAAAATTAAGGAGAAA+AGG | - | chr8_4:47491832-47491851 | Msa1329170:intron | 15.0% |
!! | CATAAAATTAATCAAGATTA+AGG | + | chr8_4:47492027-47492046 | None:intergenic | 15.0% |
!!! | TAGATATTTACATGTTTTAT+AGG | + | chr8_4:47492206-47492225 | None:intergenic | 15.0% |
!! | AATTAAGAGTAAAAAAGAAG+AGG | + | chr8_4:47490166-47490185 | None:intergenic | 20.0% |
!! | ATATGGTTCATCATAAAATT+TGG | + | chr8_4:47490304-47490323 | None:intergenic | 20.0% |
!!! | TGATCTTCTAAAATATTGTT+CGG | - | chr8_4:47490490-47490509 | Msa1329170:intron | 20.0% |
!!! | TAGAGACATTATATCTTTTA+GGG | + | chr8_4:47490799-47490818 | None:intergenic | 20.0% |
!!! | ATAGAGACATTATATCTTTT+AGG | + | chr8_4:47490800-47490819 | None:intergenic | 20.0% |
!! | TTCTATGATAAGCTAAATTA+AGG | + | chr8_4:47490863-47490882 | None:intergenic | 20.0% |
!! | AATAATACCTCATGAAAAAA+AGG | - | chr8_4:47491201-47491220 | Msa1329170:intron | 20.0% |
!!! | CTGTTATATTTTCATATAGT+TGG | + | chr8_4:47491269-47491288 | None:intergenic | 20.0% |
!! | CAACTATATGAAAATATAAC+AGG | - | chr8_4:47491267-47491286 | Msa1329170:intron | 20.0% |
!! | ATGTGAAGTAAATCTAAATA+CGG | - | chr8_4:47491483-47491502 | Msa1329170:intron | 20.0% |
!! | ATTTATAAGTTAAGGAGAAA+AGG | + | chr8_4:47491606-47491625 | None:intergenic | 20.0% |
!! | TAAAATTAATAACCCTAACT+TGG | - | chr8_4:47491667-47491686 | Msa1329170:intron | 20.0% |
!! | AAAATTAATAACCCTAACTT+GGG | - | chr8_4:47491668-47491687 | Msa1329170:intron | 20.0% |
!! | ACCTCTCAAAAAAAAAATTA+AGG | - | chr8_4:47491824-47491843 | Msa1329170:intron | 20.0% |
!!! | TCCTTAATTTTTTTTTTGAG+AGG | + | chr8_4:47491828-47491847 | None:intergenic | 20.0% |
!! | TAAATAAAGTTAAGGAGAAA+AGG | - | chr8_4:47491929-47491948 | Msa1329170:intron | 20.0% |
!! | TAATCAAGATTAAGGATAAA+AGG | + | chr8_4:47492019-47492038 | None:intergenic | 20.0% |
!!! | AATCATGGACTAAAAAAAAT+TGG | + | chr8_4:47492264-47492283 | None:intergenic | 20.0% |
!! | ACAATTCAAAATGAATGATA+TGG | - | chr8_4:47492305-47492324 | Msa1329170:CDS | 20.0% |
!!! | TAATGTTATGTTGATAATCA+AGG | - | chr8_4:47492699-47492718 | Msa1329170:five_prime_UTR | 20.0% |
! | TAAACAAAGAGAGAAAGAAA+AGG | - | chr8_4:47489496-47489515 | Msa1329170:three_prime_UTR | 25.0% |
! | AAACAAAGAGAGAAAGAAAA+GGG | - | chr8_4:47489497-47489516 | Msa1329170:three_prime_UTR | 25.0% |
!! | AATCAAAAAAAGCATATCCA+AGG | - | chr8_4:47489667-47489686 | Msa1329170:three_prime_UTR | 25.0% |
!! | TATATATTCGGTTTGATGAT+TGG | + | chr8_4:47489745-47489764 | None:intergenic | 25.0% |
! | GTTGCAAAGTAATTAATGTA+TGG | + | chr8_4:47490202-47490221 | None:intergenic | 25.0% |
!!! | AATCATTTGGTGCATTTATA+TGG | + | chr8_4:47490321-47490340 | None:intergenic | 25.0% |
!! | TTACTTTGTTTGAGTAACTT+AGG | - | chr8_4:47490424-47490443 | Msa1329170:intron | 25.0% |
! | TTAAAGTAAGGAATGGTTTA+AGG | + | chr8_4:47490766-47490785 | None:intergenic | 25.0% |
!! | TGTCCTTTTTGTTAATTTCT+CGG | - | chr8_4:47490960-47490979 | Msa1329170:intron | 25.0% |
! | TAAGTATCAACTGAATCATA+AGG | - | chr8_4:47491158-47491177 | Msa1329170:intron | 25.0% |
!!! | CAAATTTTAGTTGAAGTTGA+TGG | - | chr8_4:47491738-47491757 | Msa1329170:intron | 25.0% |
!! | ATTAAGGATAAAAGGTACAA+TGG | + | chr8_4:47492011-47492030 | None:intergenic | 25.0% |
!!! | AATCAATTTTTTTTTCTCCG+AGG | - | chr8_4:47492103-47492122 | Msa1329170:intron | 25.0% |
!! | GACATTTTTCACAAAGAAAA+AGG | - | chr8_4:47492167-47492186 | Msa1329170:intron | 25.0% |
!! | CATTTTGAATTGTTGAAACA+GGG | + | chr8_4:47492298-47492317 | None:intergenic | 25.0% |
!! | TCATTTTGAATTGTTGAAAC+AGG | + | chr8_4:47492299-47492318 | None:intergenic | 25.0% |
!!! | TATGGTTTTCTAGTTCATTT+TGG | - | chr8_4:47492323-47492342 | Msa1329170:CDS | 25.0% |
! | AAAGTATGTCACATATCAAA+AGG | + | chr8_4:47492353-47492372 | None:intergenic | 25.0% |
! | CAGAAATGAAAAAAAGTCAT+GGG | + | chr8_4:47492540-47492559 | None:intergenic | 25.0% |
! | TCAGAAATGAAAAAAAGTCA+TGG | + | chr8_4:47492541-47492560 | None:intergenic | 25.0% |
GATTATGTGTTGTGAAAGAA+AGG | + | chr8_4:47489651-47489670 | None:intergenic | 30.0% | |
CTGATTGATTGATAGATAGA+TGG | + | chr8_4:47489710-47489729 | None:intergenic | 30.0% | |
AGAGGACGACATTATATATT+CGG | + | chr8_4:47489757-47489776 | None:intergenic | 30.0% | |
! | AAATTGAGAGTATAACCAGA+AGG | + | chr8_4:47490142-47490161 | None:intergenic | 30.0% |
! | TCTAAGTAGTATAGCTTTTG+TGG | - | chr8_4:47490227-47490246 | Msa1329170:intron | 30.0% |
!!! | CATTTTTTTTTTCTTGCAGC+AGG | - | chr8_4:47490258-47490277 | Msa1329170:intron | 30.0% |
! | TCATCATAAAATTTGGAGCT+GGG | + | chr8_4:47490297-47490316 | None:intergenic | 30.0% |
! | TTCATCATAAAATTTGGAGC+TGG | + | chr8_4:47490298-47490317 | None:intergenic | 30.0% |
!!! | AAAACCATCGTTTTGATTGA+GGG | + | chr8_4:47490453-47490472 | None:intergenic | 30.0% |
!!! | AAAAACCATCGTTTTGATTG+AGG | + | chr8_4:47490454-47490473 | None:intergenic | 30.0% |
!! | CTTCTAAAATATTGTTCGGT+TGG | - | chr8_4:47490494-47490513 | Msa1329170:intron | 30.0% |
! | TTTATGTGGTTGCTATTGAT+TGG | - | chr8_4:47490655-47490674 | Msa1329170:intron | 30.0% |
! | TTCCACTTTCTTTTGGTAAA+AGG | - | chr8_4:47490707-47490726 | Msa1329170:intron | 30.0% |
! | TTCCTTTTACCAAAAGAAAG+TGG | + | chr8_4:47490712-47490731 | None:intergenic | 30.0% |
! | ACTTTCTTTTGGTAAAAGGA+AGG | - | chr8_4:47490711-47490730 | Msa1329170:intron | 30.0% |
! | AAAAGGAAGGAAGTCTTTTA+TGG | - | chr8_4:47490724-47490743 | Msa1329170:intron | 30.0% |
ATGTCTCTATAAGTAATGAC+AGG | - | chr8_4:47490810-47490829 | Msa1329170:CDS | 30.0% | |
CATAGAACAGTTTGTAATAC+TGG | - | chr8_4:47490876-47490895 | Msa1329170:intron | 30.0% | |
GTACCGAGAAATTAACAAAA+AGG | + | chr8_4:47490966-47490985 | None:intergenic | 30.0% | |
ATAGAGATGAAAGCAAACTT+AGG | - | chr8_4:47490998-47491017 | Msa1329170:CDS | 30.0% | |
! | TGGTGGATAGAAAAAAGATA+GGG | - | chr8_4:47491081-47491100 | Msa1329170:intron | 30.0% |
TTTAAACAACTACTATTCCG+GGG | + | chr8_4:47491120-47491139 | None:intergenic | 30.0% | |
CTTTAAACAACTACTATTCC+GGG | + | chr8_4:47491121-47491140 | None:intergenic | 30.0% | |
! | GCTTTAAACAACTACTATTC+CGG | + | chr8_4:47491122-47491141 | None:intergenic | 30.0% |
!!! | TCTGTTACCTTTTTTTCATG+AGG | + | chr8_4:47491211-47491230 | None:intergenic | 30.0% |
TATAAGTTAAGGAGAAAAGG+AGG | + | chr8_4:47491603-47491622 | None:intergenic | 30.0% | |
!! | AACATTTTTCAGCGAGAATA+GGG | + | chr8_4:47492487-47492506 | None:intergenic | 30.0% |
!! | AAACATTTTTCAGCGAGAAT+AGG | + | chr8_4:47492488-47492507 | None:intergenic | 30.0% |
TGTATCATTCTTCTTTATCC+AGG | - | chr8_4:47492575-47492594 | Msa1329170:CDS | 30.0% | |
! | TTTTATGCTTCTGCTAATCT+TGG | - | chr8_4:47492633-47492652 | Msa1329170:five_prime_UTR | 30.0% |
TAGAGATTGATGCATTAGTA+GGG | + | chr8_4:47492666-47492685 | None:intergenic | 30.0% | |
ATAGAGATTGATGCATTAGT+AGG | + | chr8_4:47492667-47492686 | None:intergenic | 30.0% | |
GGTAGTACTAAGGAAATTAA+AGG | + | chr8_4:47492809-47492828 | None:intergenic | 30.0% | |
ATTAGATAAGTAACCAGCTA+CGG | + | chr8_4:47492830-47492849 | None:intergenic | 30.0% | |
! | AAAAAAGCATATCCAAGGTG+TGG | - | chr8_4:47489672-47489691 | Msa1329170:three_prime_UTR | 35.0% |
TTCAACCACAACATTATCCT+TGG | - | chr8_4:47489776-47489795 | Msa1329170:intron | 35.0% | |
TAGTGATGTTTCATACAGCA+AGG | + | chr8_4:47489860-47489879 | None:intergenic | 35.0% | |
! | TAAGCTAGTGTTGAAAAGTG+GGG | + | chr8_4:47489899-47489918 | None:intergenic | 35.0% |
! | CTAAGCTAGTGTTGAAAAGT+GGG | + | chr8_4:47489900-47489919 | None:intergenic | 35.0% |
!! | TTTTCAACACTAGCTTAGCT+AGG | - | chr8_4:47489902-47489921 | Msa1329170:intron | 35.0% |
! | TTTCAACACTAGCTTAGCTA+GGG | - | chr8_4:47489903-47489922 | Msa1329170:intron | 35.0% |
TGTCCCAAATGAAACTGATT+GGG | + | chr8_4:47490092-47490111 | None:intergenic | 35.0% | |
CAGAAGGTTATGATGATTTG+GGG | + | chr8_4:47490126-47490145 | None:intergenic | 35.0% | |
CCAGAAGGTTATGATGATTT+GGG | + | chr8_4:47490127-47490146 | None:intergenic | 35.0% | |
ACCAGAAGGTTATGATGATT+TGG | + | chr8_4:47490128-47490147 | None:intergenic | 35.0% | |
!!! | TTTTTTTTTCTTGCAGCAGG+AGG | - | chr8_4:47490261-47490280 | Msa1329170:intron | 35.0% |
! | ATAAAATTTGGAGCTGGGTT+TGG | + | chr8_4:47490292-47490311 | None:intergenic | 35.0% |
ATCTCACGTCTGTTTATGAT+TGG | + | chr8_4:47490391-47490410 | None:intergenic | 35.0% | |
!! | GCACACTTTAAAGTAAGGAA+TGG | + | chr8_4:47490773-47490792 | None:intergenic | 35.0% |
TTGCTTTCATCTCTATATGC+TGG | + | chr8_4:47490994-47491013 | None:intergenic | 35.0% | |
TGTAAGATGGGGAAAATATG+TGG | - | chr8_4:47491061-47491080 | Msa1329170:intron | 35.0% | |
!! | GTGGTGGATAGAAAAAAGAT+AGG | - | chr8_4:47491080-47491099 | Msa1329170:intron | 35.0% |
TTAAACAACTACTATTCCGG+GGG | + | chr8_4:47491119-47491138 | None:intergenic | 35.0% | |
AAAGGAGGATCATACATTCT+TGG | + | chr8_4:47491588-47491607 | None:intergenic | 35.0% | |
! | GGGTTCAAGATCTGAATTTT+CGG | - | chr8_4:47491688-47491707 | Msa1329170:intron | 35.0% |
TGCTATGATAATTTACCTGC+TGG | + | chr8_4:47492455-47492474 | None:intergenic | 35.0% | |
!! | ACATTTTTCAGCGAGAATAG+GGG | + | chr8_4:47492486-47492505 | None:intergenic | 35.0% |
TCATTCTTCTTTATCCAGGA+AGG | - | chr8_4:47492579-47492598 | Msa1329170:CDS | 35.0% | |
TCAGATTCTGATGAAAGATG+CGG | - | chr8_4:47492608-47492627 | Msa1329170:five_prime_UTR | 35.0% | |
AGGACTACTACATTATCACT+AGG | - | chr8_4:47492719-47492738 | Msa1329170:five_prime_UTR | 35.0% | |
! | TTATCACTAGGTAGCTCTTT+TGG | - | chr8_4:47492731-47492750 | Msa1329170:five_prime_UTR | 35.0% |
! | TATCACTAGGTAGCTCTTTT+GGG | - | chr8_4:47492732-47492751 | Msa1329170:five_prime_UTR | 35.0% |
GGATAATGTTGTGGTTGAAG+AGG | + | chr8_4:47489775-47489794 | None:intergenic | 40.0% | |
ACATAACAAAGTTGCTCGGA+AGG | + | chr8_4:47489813-47489832 | None:intergenic | 40.0% | |
GTGGACATAACAAAGTTGCT+CGG | + | chr8_4:47489817-47489836 | None:intergenic | 40.0% | |
GATGTTTCATACAGCAAGGA+TGG | + | chr8_4:47489856-47489875 | None:intergenic | 40.0% | |
! | GCTAAGCTAGTGTTGAAAAG+TGG | + | chr8_4:47489901-47489920 | None:intergenic | 40.0% |
AAGACTGTTACTGTGAGATG+CGG | - | chr8_4:47490014-47490033 | Msa1329170:intron | 40.0% | |
AAATGAAACTGATTGGGGGA+TGG | + | chr8_4:47490086-47490105 | None:intergenic | 40.0% | |
ATCCCCCAATCAGTTTCATT+TGG | - | chr8_4:47490085-47490104 | Msa1329170:intron | 40.0% | |
TCCCCCAATCAGTTTCATTT+GGG | - | chr8_4:47490086-47490105 | Msa1329170:intron | 40.0% | |
TCCCAAATGAAACTGATTGG+GGG | + | chr8_4:47490090-47490109 | None:intergenic | 40.0% | |
GTCCCAAATGAAACTGATTG+GGG | + | chr8_4:47490091-47490110 | None:intergenic | 40.0% | |
GTGTCCCAAATGAAACTGAT+TGG | + | chr8_4:47490093-47490112 | None:intergenic | 40.0% | |
CCCAAATCATCATAACCTTC+TGG | - | chr8_4:47490124-47490143 | Msa1329170:intron | 40.0% | |
! | GGAGGCATAGAGAAATCATT+TGG | + | chr8_4:47490334-47490353 | None:intergenic | 40.0% |
TCACGTCTGTTTATGATTGG+TGG | + | chr8_4:47490388-47490407 | None:intergenic | 40.0% | |
GTTTCCCTCAATCAAAACGA+TGG | - | chr8_4:47490446-47490465 | Msa1329170:intron | 40.0% | |
! | TTGATTGGACAGTGTTGTTG+AGG | - | chr8_4:47490670-47490689 | Msa1329170:intron | 40.0% |
AGAAAGTGGAACAAGACCAA+GGG | + | chr8_4:47490698-47490717 | None:intergenic | 40.0% | |
AAGAAAGTGGAACAAGACCA+AGG | + | chr8_4:47490699-47490718 | None:intergenic | 40.0% | |
!!! | GGTCTTGTTCCACTTTCTTT+TGG | - | chr8_4:47490700-47490719 | Msa1329170:intron | 40.0% |
!! | GGCATGCACACTTTAAAGTA+AGG | + | chr8_4:47490778-47490797 | None:intergenic | 40.0% |
AAACAAAGCCTCGTGAAGAA+GGG | + | chr8_4:47490929-47490948 | None:intergenic | 40.0% | |
AAAACAAAGCCTCGTGAAGA+AGG | + | chr8_4:47490930-47490949 | None:intergenic | 40.0% | |
AAGATGGGGAAAATATGTGG+TGG | - | chr8_4:47491064-47491083 | Msa1329170:intron | 40.0% | |
ATGAAGCGATTGTATGCTGA+GGG | + | chr8_4:47491358-47491377 | None:intergenic | 40.0% | |
GATTGACAGACTTAATGCGT+TGG | + | chr8_4:47491529-47491548 | None:intergenic | 40.0% | |
TCAATCCTGATATAACCCAC+AGG | - | chr8_4:47491543-47491562 | Msa1329170:intron | 40.0% | |
CAATCCTGATATAACCCACA+GGG | - | chr8_4:47491544-47491563 | Msa1329170:intron | 40.0% | |
CAGATCTTGAACCCAAGTTA+GGG | + | chr8_4:47491682-47491701 | None:intergenic | 40.0% | |
TCAGATCTTGAACCCAAGTT+AGG | + | chr8_4:47491683-47491702 | None:intergenic | 40.0% | |
!! | TTGAAGTTGATGGTTCTCCT+CGG | - | chr8_4:47491748-47491767 | Msa1329170:intron | 40.0% |
AAGGAGAAAAGGATGCTCTT+TGG | - | chr8_4:47491843-47491862 | Msa1329170:intron | 40.0% | |
TGAATTGTTGAAACAGGGCA+GGG | + | chr8_4:47492293-47492312 | None:intergenic | 40.0% | |
TTGAATTGTTGAAACAGGGC+AGG | + | chr8_4:47492294-47492313 | None:intergenic | 40.0% | |
ACATACTTTCTGTGTGACAG+TGG | - | chr8_4:47492364-47492383 | Msa1329170:intron | 40.0% | |
CATACTTTCTGTGTGACAGT+GGG | - | chr8_4:47492365-47492384 | Msa1329170:intron | 40.0% | |
AAAGTGAATGTGTGGGAAGT+GGG | + | chr8_4:47492391-47492410 | None:intergenic | 40.0% | |
TGAGACCAAAGTGAATGTGT+GGG | + | chr8_4:47492398-47492417 | None:intergenic | 40.0% | |
ATGAGACCAAAGTGAATGTG+TGG | + | chr8_4:47492399-47492418 | None:intergenic | 40.0% | |
GTCTTCTTCATAGTCTGATC+AGG | + | chr8_4:47492423-47492442 | None:intergenic | 40.0% | |
CAGATTCTGATGAAAGATGC+GGG | - | chr8_4:47492609-47492628 | Msa1329170:five_prime_UTR | 40.0% | |
AGAGAAAGAAAAGGGTTCCG+TGG | - | chr8_4:47489505-47489524 | Msa1329170:three_prime_UTR | 45.0% | |
AAAAGGGTTCCGTGGCAATA+TGG | - | chr8_4:47489513-47489532 | Msa1329170:three_prime_UTR | 45.0% | |
CATAGGGAACCATATTGCCA+CGG | + | chr8_4:47489525-47489544 | None:intergenic | 45.0% | |
AAAGCATATCCAAGGTGTGG+TGG | - | chr8_4:47489675-47489694 | Msa1329170:exon | 45.0% | |
ACAAGTTAACCACCACACCT+TGG | + | chr8_4:47489687-47489706 | None:intergenic | 45.0% | |
GTGGTCCAAGGATAATGTTG+TGG | + | chr8_4:47489784-47489803 | None:intergenic | 45.0% | |
AACAAAGTTGCTCGGAAGGA+GGG | + | chr8_4:47489809-47489828 | None:intergenic | 45.0% | |
TAACAAAGTTGCTCGGAAGG+AGG | + | chr8_4:47489810-47489829 | None:intergenic | 45.0% | |
! | CTAGTGTTGAAAAGTGGGGA+TGG | + | chr8_4:47489895-47489914 | None:intergenic | 45.0% |
GTCTTGAACAAGCTTGTGCA+AGG | + | chr8_4:47489999-47490018 | None:intergenic | 45.0% | |
AGTAATGCACGCATGTTGAC+TGG | + | chr8_4:47490059-47490078 | None:intergenic | 45.0% | |
ATTTCTCTATGCCTCCCACT+AGG | - | chr8_4:47490338-47490357 | Msa1329170:intron | 45.0% | |
TCATCAGCTACAGTCCTAGT+GGG | + | chr8_4:47490355-47490374 | None:intergenic | 45.0% | |
! | CTGTTTATGATTGGTGGTCG+TGG | + | chr8_4:47490382-47490401 | None:intergenic | 45.0% |
! | GGAACTCTCTGTCTTTTCTC+TGG | + | chr8_4:47491337-47491356 | None:intergenic | 45.0% |
GATGAAGCGATTGTATGCTG+AGG | + | chr8_4:47491359-47491378 | None:intergenic | 45.0% | |
TCTAAATACGGTCCATCTGC+AGG | - | chr8_4:47491495-47491514 | Msa1329170:intron | 45.0% | |
CTAAATACGGTCCATCTGCA+GGG | - | chr8_4:47491496-47491515 | Msa1329170:intron | 45.0% | |
TTCTCCGAGGTTTGCATACT+CGG | - | chr8_4:47492116-47492135 | Msa1329170:intron | 45.0% | |
TAAGCCGAGTATGCAAACCT+CGG | + | chr8_4:47492123-47492142 | None:intergenic | 45.0% | |
AGGGCAGGGAAATACAATCA+TGG | + | chr8_4:47492279-47492298 | None:intergenic | 45.0% | |
CAAAGTGAATGTGTGGGAAG+TGG | + | chr8_4:47492392-47492411 | None:intergenic | 45.0% | |
CACTTCCCACACATTCACTT+TGG | - | chr8_4:47492390-47492409 | Msa1329170:intron | 45.0% | |
GAATCTGATCATCTCCTTCC+TGG | + | chr8_4:47492596-47492615 | None:intergenic | 45.0% | |
TTCCTTAGTACTACCGTAGC+TGG | - | chr8_4:47492814-47492833 | Msa1329170:five_prime_UTR | 45.0% | |
AACCAGCTACGGTAGTACTA+AGG | + | chr8_4:47492819-47492838 | None:intergenic | 45.0% | |
!! | AGCAAGGATGGTGTCACAGA+TGG | + | chr8_4:47489844-47489863 | None:intergenic | 50.0% |
CTCATCAGCTACAGTCCTAG+TGG | + | chr8_4:47490356-47490375 | None:intergenic | 50.0% | |
! | CAGTGTTGTTGAGGTACCCT+TGG | - | chr8_4:47490679-47490698 | Msa1329170:intron | 50.0% |
!! | AGGGTACTTTTCTTCTCCCC+CGG | - | chr8_4:47491100-47491119 | Msa1329170:intron | 50.0% |
!!! | CTCTGTCTTTTCTCTGGAGC+TGG | + | chr8_4:47491331-47491350 | None:intergenic | 50.0% |
! | GCTTCCCTGTGGGTTATATC+AGG | + | chr8_4:47491551-47491570 | None:intergenic | 50.0% |
GTGAGAGACACTCATTACCG+AGG | + | chr8_4:47491768-47491787 | None:intergenic | 50.0% | |
GAAGACAAATGTGTGCCAGC+AGG | - | chr8_4:47492437-47492456 | Msa1329170:intron | 50.0% | |
AAAGTTGCTCGGAAGGAGGG+AGG | + | chr8_4:47489806-47489825 | None:intergenic | 55.0% | |
!! | TGGTGTCACAGATGGTGCAG+TGG | + | chr8_4:47489836-47489855 | None:intergenic | 55.0% |
TCAGCTACAGTCCTAGTGGG+AGG | + | chr8_4:47490352-47490371 | None:intergenic | 55.0% | |
TTGGATCTCGTCCCTGCAGA+TGG | + | chr8_4:47491510-47491529 | None:intergenic | 55.0% | |
ATTCTTGGCAGCTGCGCTGA+AGG | + | chr8_4:47491573-47491592 | None:intergenic | 55.0% | |
TGCGCTGAAGGCTTCCCTGT+GGG | + | chr8_4:47491561-47491580 | None:intergenic | 60.0% | |
GGAAGGAGGGAGGTGGTCCA+AGG | + | chr8_4:47489796-47489815 | None:intergenic | 65.0% | |
GTTGCTCGGAAGGAGGGAGG+TGG | + | chr8_4:47489803-47489822 | None:intergenic | 65.0% | |
GGGCACAGCCCTTCTTCACG+AGG | - | chr8_4:47490918-47490937 | Msa1329170:intron | 65.0% | |
CTGCGCTGAAGGCTTCCCTG+TGG | + | chr8_4:47491562-47491581 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 47489484 | 47492879 | 47489484 | ID=Msa1329170;Name=Msa1329170 |
chr8_4 | mRNA | 47489484 | 47492879 | 47489484 | ID=Msa1329170-mRNA-1;Parent=Msa1329170;Name=Msa1329170-mRNA-1;_AED=0.12;_eAED=0.12;_QI=281|1|1|1|1|1|7|208|219 |
chr8_4 | exon | 47489484 | 47489766 | 47489484 | ID=Msa1329170-mRNA-1:exon:13650;Parent=Msa1329170-mRNA-1 |
chr8_4 | exon | 47489905 | 47489979 | 47489905 | ID=Msa1329170-mRNA-1:exon:13649;Parent=Msa1329170-mRNA-1 |
chr8_4 | exon | 47490771 | 47490846 | 47490771 | ID=Msa1329170-mRNA-1:exon:13648;Parent=Msa1329170-mRNA-1 |
chr8_4 | exon | 47490983 | 47491031 | 47490983 | ID=Msa1329170-mRNA-1:exon:13647;Parent=Msa1329170-mRNA-1 |
chr8_4 | exon | 47491960 | 47492086 | 47491960 | ID=Msa1329170-mRNA-1:exon:13646;Parent=Msa1329170-mRNA-1 |
chr8_4 | exon | 47492218 | 47492376 | 47492218 | ID=Msa1329170-mRNA-1:exon:13645;Parent=Msa1329170-mRNA-1 |
chr8_4 | exon | 47492500 | 47492879 | 47492500 | ID=Msa1329170-mRNA-1:exon:13644;Parent=Msa1329170-mRNA-1 |
chr8_4 | five_prime_UTR | 47492599 | 47492879 | 47492599 | ID=Msa1329170-mRNA-1:five_prime_utr;Parent=Msa1329170-mRNA-1 |
chr8_4 | CDS | 47492500 | 47492598 | 47492500 | ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1 |
chr8_4 | CDS | 47492218 | 47492376 | 47492218 | ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1 |
chr8_4 | CDS | 47491960 | 47492086 | 47491960 | ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1 |
chr8_4 | CDS | 47490983 | 47491031 | 47490983 | ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1 |
chr8_4 | CDS | 47490771 | 47490846 | 47490771 | ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1 |
chr8_4 | CDS | 47489905 | 47489979 | 47489905 | ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1 |
chr8_4 | CDS | 47489692 | 47489766 | 47489692 | ID=Msa1329170-mRNA-1:cds;Parent=Msa1329170-mRNA-1 |
chr8_4 | three_prime_UTR | 47489484 | 47489691 | 47489484 | ID=Msa1329170-mRNA-1:three_prime_utr;Parent=Msa1329170-mRNA-1 |
Gene Sequence |
Protein sequence |