AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450530 MtrunA17_Chr4g0056521 98.630 219 2 1 1 219 1 218 2.31e-162 446
Msa1450530 MtrunA17_Chr4g0011841 70.792 202 52 5 20 219 25 221 4.00e-90 264
Msa1450530 MtrunA17_Chr2g0322221 49.510 204 91 6 8 209 2 195 1.52e-56 178
Msa1450530 MtrunA17_Chr4g0063931 53.333 180 64 5 7 182 2 165 3.88e-55 174
Msa1450530 MtrunA17_Chr4g0025361 49.010 202 77 7 9 209 1 177 8.81e-50 160
Msa1450530 MtrunA17_Chr5g0413381 49.686 159 71 4 18 175 12 162 7.19e-46 150
Msa1450530 MtrunA17_Chr5g0419871 41.317 167 79 3 9 174 7 155 4.97e-34 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450530 AT2G45190.1 61.009 218 74 6 10 219 15 229 2.60e-82 245
Msa1450530 AT4G00180.1 61.504 226 63 10 12 217 17 238 1.68e-73 223
Msa1450530 AT4G00180.2 60.190 211 60 10 27 217 1 207 3.55e-62 193
Msa1450530 AT2G26580.2 57.143 168 49 6 17 182 8 154 1.63e-56 177
Msa1450530 AT2G26580.1 57.143 168 49 6 17 182 8 154 1.63e-56 177
Msa1450530 AT1G08465.1 50.515 194 79 4 17 209 7 184 6.44e-55 174
Msa1450530 AT2G45190.2 57.143 168 61 6 60 219 1 165 3.73e-54 171
Msa1450530 AT1G23420.1 46.286 175 90 3 6 178 8 180 6.59e-39 134
Msa1450530 AT1G23420.2 46.286 175 90 3 6 178 39 211 3.60e-38 133
Msa1450530 AT1G69180.1 45.000 160 69 3 15 174 16 156 6.32e-34 120

Find 79 sgRNAs with CRISPR-Local

Find 474 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATGGTTCATCATAAAATT+TGG 0.162315 tig0032970:+30923 None:intergenic
AATCATTTGGTGCATTTATA+TGG 0.220470 tig0032970:+30906 None:intergenic
TTATCACTAGGTAGCTCTTT+TGG 0.238958 tig0032970:-27822 Msa1450530:three_prime_UTR
ACCAGAAGGTTATGATGATT+TGG 0.269243 tig0032970:+31120 None:intergenic
GGTAGTACTAAGGAAATTAA+AGG 0.299349 tig0032970:+27747 None:intergenic
CCAGAAGGTTATGATGATTT+GGG 0.306156 tig0032970:+31121 None:intergenic
TAATTTAAATACTAATAAAC+AGG 0.320859 tig0032970:+31696 None:intergenic
TATATATTCGGTTTGATGAT+TGG 0.328788 tig0032970:+31499 None:intergenic
ATAAAATTTGGAGCTGGGTT+TGG 0.340235 tig0032970:+30935 None:intergenic
GCTTCCCTGTGGGTTATATC+AGG 0.345088 tig0032970:+29005 None:intergenic
CCCAAATCATCATAACCTTC+TGG 0.358123 tig0032970:-31121 Msa1450530:intron
AGAGGACGACATTATATATT+CGG 0.359434 tig0032970:+31487 None:intergenic
GTCTTCTTCATAGTCTGATC+AGG 0.388325 tig0032970:+28133 None:intergenic
ATAGAGATTGATGCATTAGT+AGG 0.390762 tig0032970:+27889 None:intergenic
AAAAGGGTTCCGTGGCAATA+TGG 0.396523 tig0032970:-31722 Msa1450530:five_prime_UTR
CTGATTGATTGATAGATAGA+TGG 0.429694 tig0032970:+31534 None:intergenic
CACTTCCCACACATTCACTT+TGG 0.432093 tig0032970:-28163 Msa1450530:CDS
TGTCCCAAATGAAACTGATT+GGG 0.435332 tig0032970:+31156 None:intergenic
TTCCTTAGTACTACCGTAGC+TGG 0.442078 tig0032970:-27739 Msa1450530:three_prime_UTR
TTCAACCACAACATTATCCT+TGG 0.449974 tig0032970:-31465 Msa1450530:CDS
TAAACAAAGAGAGAAAGAAA+AGG 0.467919 tig0032970:-31739 Msa1450530:five_prime_UTR
GTGTCCCAAATGAAACTGAT+TGG 0.468609 tig0032970:+31155 None:intergenic
AAAGGAGGATCATACATTCT+TGG 0.469847 tig0032970:+28968 None:intergenic
AGTAATGCACGCATGTTGAC+TGG 0.472196 tig0032970:+31189 None:intergenic
TTCATCATAAAATTTGGAGC+TGG 0.473136 tig0032970:+30929 None:intergenic
TAATGTTATGTTGATAATCA+AGG 0.477535 tig0032970:-27854 Msa1450530:three_prime_UTR
GGAGGCATAGAGAAATCATT+TGG 0.480020 tig0032970:+30893 None:intergenic
TCACGTCTGTTTATGATTGG+TGG 0.480315 tig0032970:+30839 None:intergenic
TCATCATAAAATTTGGAGCT+GGG 0.482099 tig0032970:+30930 None:intergenic
AAACAAAGAGAGAAAGAAAA+GGG 0.485188 tig0032970:-31738 Msa1450530:five_prime_UTR
ATCTCACGTCTGTTTATGAT+TGG 0.489279 tig0032970:+30836 None:intergenic
GATTATGTGTTGTGAAAGAA+AGG 0.492989 tig0032970:+31593 None:intergenic
ATTCTTGGCAGCTGCGCTGA+AGG 0.503305 tig0032970:+28983 None:intergenic
CAAAGTGAATGTGTGGGAAG+TGG 0.524635 tig0032970:+28164 None:intergenic
CTGTTTATGATTGGTGGTCG+TGG 0.531680 tig0032970:+30845 None:intergenic
AACCAGCTACGGTAGTACTA+AGG 0.531999 tig0032970:+27737 None:intergenic
TGCGCTGAAGGCTTCCCTGT+GGG 0.539083 tig0032970:+28995 None:intergenic
CAGATTCTGATGAAAGATGC+GGG 0.541160 tig0032970:-27944 Msa1450530:CDS
AACAAAGTTGCTCGGAAGGA+GGG 0.547749 tig0032970:+31435 None:intergenic
GGAAGGAGGGAGGTGGTCCA+AGG 0.549892 tig0032970:+31448 None:intergenic
GAAGACAAATGTGTGCCAGC+AGG 0.553012 tig0032970:-28116 Msa1450530:intron
CTGCGCTGAAGGCTTCCCTG+TGG 0.555021 tig0032970:+28994 None:intergenic
GATGTTTCATACAGCAAGGA+TGG 0.571365 tig0032970:+31388 None:intergenic
GAACTTGTAACTAGAAAGCA+AGG 0.573026 tig0032970:+27691 None:intergenic
TAGAGATTGATGCATTAGTA+GGG 0.577948 tig0032970:+27890 None:intergenic
GGATAATGTTGTGGTTGAAG+AGG 0.579637 tig0032970:+31469 None:intergenic
GTCTTGAACAAGCTTGTGCA+AGG 0.580384 tig0032970:+31249 None:intergenic
TAACAAAGTTGCTCGGAAGG+AGG 0.582448 tig0032970:+31434 None:intergenic
GTTGCTCGGAAGGAGGGAGG+TGG 0.583306 tig0032970:+31441 None:intergenic
ATTAGATAAGTAACCAGCTA+CGG 0.584275 tig0032970:+27726 None:intergenic
GATTGACAGACTTAATGCGT+TGG 0.585391 tig0032970:+29027 None:intergenic
ACATAACAAAGTTGCTCGGA+AGG 0.586092 tig0032970:+31431 None:intergenic
AAAGTGAATGTGTGGGAAGT+GGG 0.594462 tig0032970:+28165 None:intergenic
CTCATCAGCTACAGTCCTAG+TGG 0.598065 tig0032970:+30871 None:intergenic
AGCAAGGATGGTGTCACAGA+TGG 0.603099 tig0032970:+31400 None:intergenic
TCAATCCTGATATAACCCAC+AGG 0.603889 tig0032970:-29010 Msa1450530:CDS
TCATCAGCTACAGTCCTAGT+GGG 0.606377 tig0032970:+30872 None:intergenic
ATTTCTCTATGCCTCCCACT+AGG 0.608537 tig0032970:-30886 Msa1450530:CDS
ACAAGTTAACCACCACACCT+TGG 0.608577 tig0032970:+31557 None:intergenic
AAAGCATATCCAAGGTGTGG+TGG 0.610066 tig0032970:-31566 Msa1450530:five_prime_UTR
TCAGATTCTGATGAAAGATG+CGG 0.615278 tig0032970:-27945 Msa1450530:CDS
CAGAAGGTTATGATGATTTG+GGG 0.623732 tig0032970:+31122 None:intergenic
GTGGACATAACAAAGTTGCT+CGG 0.624197 tig0032970:+31427 None:intergenic
AGAGAAAGAAAAGGGTTCCG+TGG 0.624758 tig0032970:-31730 Msa1450530:five_prime_UTR
AACAGGGAACCATATTGCCA+CGG 0.633774 tig0032970:+31713 None:intergenic
ATGAGACCAAAGTGAATGTG+TGG 0.636661 tig0032970:+28157 None:intergenic
GTCCCAAATGAAACTGATTG+GGG 0.640416 tig0032970:+31157 None:intergenic
CAATCCTGATATAACCCACA+GGG 0.644329 tig0032970:-29009 Msa1450530:CDS
AATTTAAATACTAATAAACA+GGG 0.655409 tig0032970:+31697 None:intergenic
AGGACTACTACATTATCACT+AGG 0.658383 tig0032970:-27834 Msa1450530:three_prime_UTR
AAAGTTGCTCGGAAGGAGGG+AGG 0.666622 tig0032970:+31438 None:intergenic
ATGAAGCGATTGTATGCTGA+GGG 0.673566 tig0032970:+29195 None:intergenic
TCAGCTACAGTCCTAGTGGG+AGG 0.678197 tig0032970:+30875 None:intergenic
TGGTGTCACAGATGGTGCAG+TGG 0.683501 tig0032970:+31408 None:intergenic
AAGACTGTTACTGTGAGATG+CGG 0.688688 tig0032970:-31231 Msa1450530:CDS
TGAGACCAAAGTGAATGTGT+GGG 0.708380 tig0032970:+28158 None:intergenic
GTGGTCCAAGGATAATGTTG+TGG 0.713676 tig0032970:+31460 None:intergenic
GATGAAGCGATTGTATGCTG+AGG 0.735800 tig0032970:+29194 None:intergenic
TCCCAAATGAAACTGATTGG+GGG 0.774348 tig0032970:+31158 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAATAAATAAAAATA+TGG - tig0032970:30956-30975 Msa1450530:intron 0.0%
!! TAAATAAATAAATAAAAATA+TGG - tig0032970:30956-30975 Msa1450530:intron 0.0%
!! AATTTAAATACTAATAAACA+GGG + tig0032970:27753-27772 None:intergenic 10.0%
!! TAATTTAAATACTAATAAAC+AGG + tig0032970:27754-27773 None:intergenic 10.0%
!! AGTTCAAATTAATAAATTAT+GGG - tig0032970:28762-28781 Msa1450530:intron 10.0%
!! AAAAAAAAATTTACTTTATG+TGG - tig0032970:28864-28883 Msa1450530:intron 10.0%
!! ATTCATTTATTTATAAGTTA+AGG + tig0032970:30508-30527 None:intergenic 10.0%
!!! ATATTGATTAAATAAAGTTA+AGG - tig0032970:30815-30834 Msa1450530:intron 10.0%
!! ATGTAAATATCTATAAAAAA+AGG - tig0032970:31107-31126 Msa1450530:intron 10.0%
!! AATTTAAATACTAATAAACA+GGG + tig0032970:27753-27772 None:intergenic 10.0%
!! TAATTTAAATACTAATAAAC+AGG + tig0032970:27754-27773 None:intergenic 10.0%
!! AGTTCAAATTAATAAATTAT+GGG - tig0032970:28762-28781 Msa1450530:intron 10.0%
!! AAAAAAAAATTTACTTTATG+TGG - tig0032970:28864-28883 Msa1450530:intron 10.0%
!! ATTCATTTATTTATAAGTTA+AGG + tig0032970:30508-30527 None:intergenic 10.0%
!!! ATATTGATTAAATAAAGTTA+AGG - tig0032970:30815-30834 Msa1450530:intron 10.0%
!! ATGTAAATATCTATAAAAAA+AGG - tig0032970:31107-31126 Msa1450530:intron 10.0%
!! GTTATATTTGCATAAAAAAA+TGG + tig0032970:28145-28164 None:intergenic 15.0%
!! TTAATGTATGGTATATAAAA+TGG + tig0032970:28413-28432 None:intergenic 15.0%
!! GAGTTCAAATTAATAAATTA+TGG - tig0032970:28761-28780 Msa1450530:intron 15.0%
!!! TGGAAATTATTTATGATTTT+AGG - tig0032970:29116-29135 Msa1450530:intron 15.0%
!!! GGAAATTATTTATGATTTTA+GGG - tig0032970:29117-29136 Msa1450530:intron 15.0%
!! AACAGATTAATTAAATTGAA+AGG - tig0032970:30122-30141 Msa1450530:intron 15.0%
!!! GATTTTGATATATATGATAA+CGG - tig0032970:30191-30210 Msa1450530:intron 15.0%
!!! AGTTAAAAAAAAAAGTACAA+TGG + tig0032970:30299-30318 None:intergenic 15.0%
!! AAAAAAAAATTAAGGAGAAA+AGG - tig0032970:30726-30745 Msa1450530:intron 15.0%
!! CATAAAATTAATCAAGATTA+AGG + tig0032970:30921-30940 None:intergenic 15.0%
!!! TAGATATTTACATGTTTTAT+AGG + tig0032970:31100-31119 None:intergenic 15.0%
!! GTTATATTTGCATAAAAAAA+TGG + tig0032970:28145-28164 None:intergenic 15.0%
!! TTAATGTATGGTATATAAAA+TGG + tig0032970:28413-28432 None:intergenic 15.0%
!! GAGTTCAAATTAATAAATTA+TGG - tig0032970:28761-28780 Msa1450530:intron 15.0%
!!! TGGAAATTATTTATGATTTT+AGG - tig0032970:29116-29135 Msa1450530:intron 15.0%
!!! GGAAATTATTTATGATTTTA+GGG - tig0032970:29117-29136 Msa1450530:intron 15.0%
!! AACAGATTAATTAAATTGAA+AGG - tig0032970:30122-30141 Msa1450530:intron 15.0%
!!! GATTTTGATATATATGATAA+CGG - tig0032970:30191-30210 Msa1450530:intron 15.0%
!!! AGTTAAAAAAAAAAGTACAA+TGG + tig0032970:30299-30318 None:intergenic 15.0%
!! AAAAAAAAATTAAGGAGAAA+AGG - tig0032970:30726-30745 Msa1450530:intron 15.0%
!! CATAAAATTAATCAAGATTA+AGG + tig0032970:30921-30940 None:intergenic 15.0%
!!! TAGATATTTACATGTTTTAT+AGG + tig0032970:31100-31119 None:intergenic 15.0%
!!! ATTCCTTCATTTTTTTTTTC+AGG - tig0032970:28167-28186 Msa1450530:CDS 20.0%
!! ATATGGTTCATCATAAAATT+TGG + tig0032970:28527-28546 None:intergenic 20.0%
!!! TTATTTTGTTTGAGTAACTT+AGG - tig0032970:28647-28666 Msa1450530:intron 20.0%
!!! TGATCTTCTAAAATATTGTT+CGG - tig0032970:28713-28732 Msa1450530:intron 20.0%
!!! TAGAGACATTATATCTTTTA+GGG + tig0032970:29022-29041 None:intergenic 20.0%
!!! ATAGAGACATTATATCTTTT+AGG + tig0032970:29023-29042 None:intergenic 20.0%
!! TTATGTAAGATGAAAATATG+TGG - tig0032970:29273-29292 Msa1450530:intron 20.0%
!!! ATCAAATTTTGCTTATAATC+CGG - tig0032970:29446-29465 Msa1450530:intron 20.0%
!!! TTCATCACATTTTATTACAT+AGG + tig0032970:29761-29780 None:intergenic 20.0%
!! ATGTAATAAAATGTGATGAA+TGG - tig0032970:29761-29780 Msa1450530:intron 20.0%
!! AATAATACCTCATGAAAAAA+AGG - tig0032970:30098-30117 Msa1450530:intron 20.0%
!!! CTGTTATATTTTCATATAGT+TGG + tig0032970:30166-30185 None:intergenic 20.0%
!! CAACTATATGAAAATATAAC+AGG - tig0032970:30164-30183 Msa1450530:intron 20.0%
!! ATGTGAAGTAAATCTAAATA+CGG - tig0032970:30377-30396 Msa1450530:intron 20.0%
!! ATTTATAAGTTAAGGAGAAA+AGG + tig0032970:30500-30519 None:intergenic 20.0%
!! TAAAATTAATAACCCTAACT+TGG - tig0032970:30561-30580 Msa1450530:intron 20.0%
!! AAAATTAATAACCCTAACTT+GGG - tig0032970:30562-30581 Msa1450530:intron 20.0%
!! ACCTCTCAAAAAAAAAATTA+AGG - tig0032970:30718-30737 Msa1450530:intron 20.0%
!!! TCCTTAATTTTTTTTTTGAG+AGG + tig0032970:30722-30741 None:intergenic 20.0%
!! TAAATAAAGTTAAGGAGAAA+AGG - tig0032970:30823-30842 Msa1450530:intron 20.0%
!! TAATCAAGATTAAGGATAAA+AGG + tig0032970:30913-30932 None:intergenic 20.0%
!!! AATCATGGACTAAAAAAAAT+TGG + tig0032970:31158-31177 None:intergenic 20.0%
!! ACAATTCAAAATGAATGATA+TGG - tig0032970:31199-31218 Msa1450530:CDS 20.0%
!!! TAATGTTATGTTGATAATCA+AGG - tig0032970:31593-31612 Msa1450530:five_prime_UTR 20.0%
!!! ATTCCTTCATTTTTTTTTTC+AGG - tig0032970:28167-28186 Msa1450530:CDS 20.0%
!! ATATGGTTCATCATAAAATT+TGG + tig0032970:28527-28546 None:intergenic 20.0%
!!! TTATTTTGTTTGAGTAACTT+AGG - tig0032970:28647-28666 Msa1450530:intron 20.0%
!!! TGATCTTCTAAAATATTGTT+CGG - tig0032970:28713-28732 Msa1450530:intron 20.0%
!!! TAGAGACATTATATCTTTTA+GGG + tig0032970:29022-29041 None:intergenic 20.0%
!!! ATAGAGACATTATATCTTTT+AGG + tig0032970:29023-29042 None:intergenic 20.0%
!! TTATGTAAGATGAAAATATG+TGG - tig0032970:29273-29292 Msa1450530:intron 20.0%
!!! ATCAAATTTTGCTTATAATC+CGG - tig0032970:29446-29465 Msa1450530:intron 20.0%
!!! TTCATCACATTTTATTACAT+AGG + tig0032970:29761-29780 None:intergenic 20.0%
!! ATGTAATAAAATGTGATGAA+TGG - tig0032970:29761-29780 Msa1450530:intron 20.0%
!! AATAATACCTCATGAAAAAA+AGG - tig0032970:30098-30117 Msa1450530:intron 20.0%
!!! CTGTTATATTTTCATATAGT+TGG + tig0032970:30166-30185 None:intergenic 20.0%
!! CAACTATATGAAAATATAAC+AGG - tig0032970:30164-30183 Msa1450530:intron 20.0%
!! ATGTGAAGTAAATCTAAATA+CGG - tig0032970:30377-30396 Msa1450530:intron 20.0%
!! ATTTATAAGTTAAGGAGAAA+AGG + tig0032970:30500-30519 None:intergenic 20.0%
!! TAAAATTAATAACCCTAACT+TGG - tig0032970:30561-30580 Msa1450530:intron 20.0%
!! AAAATTAATAACCCTAACTT+GGG - tig0032970:30562-30581 Msa1450530:intron 20.0%
!! ACCTCTCAAAAAAAAAATTA+AGG - tig0032970:30718-30737 Msa1450530:intron 20.0%
!!! TCCTTAATTTTTTTTTTGAG+AGG + tig0032970:30722-30741 None:intergenic 20.0%
!! TAAATAAAGTTAAGGAGAAA+AGG - tig0032970:30823-30842 Msa1450530:intron 20.0%
!! TAATCAAGATTAAGGATAAA+AGG + tig0032970:30913-30932 None:intergenic 20.0%
!!! AATCATGGACTAAAAAAAAT+TGG + tig0032970:31158-31177 None:intergenic 20.0%
!! ACAATTCAAAATGAATGATA+TGG - tig0032970:31199-31218 Msa1450530:CDS 20.0%
!!! TAATGTTATGTTGATAATCA+AGG - tig0032970:31593-31612 Msa1450530:five_prime_UTR 20.0%
! TAAACAAAGAGAGAAAGAAA+AGG - tig0032970:27708-27727 Msa1450530:three_prime_UTR 25.0%
! AAACAAAGAGAGAAAGAAAA+GGG - tig0032970:27709-27728 Msa1450530:three_prime_UTR 25.0%
!! AATCAAAAAAAGCATATCCA+AGG - tig0032970:27873-27892 Msa1450530:three_prime_UTR 25.0%
!! TATATATTCGGTTTGATGAT+TGG + tig0032970:27951-27970 None:intergenic 25.0%
! TCACCTGAAAAAAAAAATGA+AGG + tig0032970:28173-28192 None:intergenic 25.0%
!! AAAAAGAAAGTATAACCAGA+AGG + tig0032970:28344-28363 None:intergenic 25.0%
! AGTAGTTAAGAAAAAAGAAG+AGG + tig0032970:28368-28387 None:intergenic 25.0%
! GTTGCAAAGTAATTAATGTA+TGG + tig0032970:28425-28444 None:intergenic 25.0%
!!! AATCATTTGGTGCATTTATA+TGG + tig0032970:28544-28563 None:intergenic 25.0%
! TTAAAGTAAGGAATGGTTTA+AGG + tig0032970:28989-29008 None:intergenic 25.0%
! GTTCTATGATAAGCTAAATA+AGG + tig0032970:29084-29103 None:intergenic 25.0%
!! ATGTCCTTTTGTTAATTTCT+CGG - tig0032970:29177-29196 Msa1450530:intron 25.0%
! ATATAAGCAGTTTACACTTT+AGG - tig0032970:29362-29381 Msa1450530:intron 25.0%
! ATGATATATAGTCTTTGTTG+AGG - tig0032970:29399-29418 Msa1450530:intron 25.0%
!!! ATGAAATTTGCTAAGTTGAA+TGG - tig0032970:29616-29635 Msa1450530:intron 25.0%
!!! TGAAATTTGCTAAGTTGAAT+GGG - tig0032970:29617-29636 Msa1450530:intron 25.0%
! TTAGAATTTCAACAGATGAT+AGG - tig0032970:29847-29866 Msa1450530:intron 25.0%
! ATCTGGATAGAAAAAAGATA+GGG - tig0032970:29985-30004 Msa1450530:intron 25.0%
! TCAGTAATAAGTATCAACTA+AGG - tig0032970:30055-30074 Msa1450530:intron 25.0%
!!! CAAATTTTAGTTGAAGTTGA+TGG - tig0032970:30632-30651 Msa1450530:intron 25.0%
!! ATTAAGGATAAAAGGTACAA+TGG + tig0032970:30905-30924 None:intergenic 25.0%
!!! AATCAATTTTTTTTTCTCCG+AGG - tig0032970:30997-31016 Msa1450530:intron 25.0%
!! GACATTTTTCACAAAGAAAA+AGG - tig0032970:31061-31080 Msa1450530:intron 25.0%
!! CATTTTGAATTGTTGAAACA+GGG + tig0032970:31192-31211 None:intergenic 25.0%
!! TCATTTTGAATTGTTGAAAC+AGG + tig0032970:31193-31212 None:intergenic 25.0%
!!! TATGGTTTTCTAGTTCATTT+TGG - tig0032970:31217-31236 Msa1450530:CDS 25.0%
! AAAGTATGTCACATATCAAA+AGG + tig0032970:31247-31266 None:intergenic 25.0%
! CAGAAATGAAAAAAAGTCAT+GGG + tig0032970:31434-31453 None:intergenic 25.0%
! TCAGAAATGAAAAAAAGTCA+TGG + tig0032970:31435-31454 None:intergenic 25.0%
! TAAACAAAGAGAGAAAGAAA+AGG - tig0032970:27708-27727 Msa1450530:three_prime_UTR 25.0%
! AAACAAAGAGAGAAAGAAAA+GGG - tig0032970:27709-27728 Msa1450530:three_prime_UTR 25.0%
!! AATCAAAAAAAGCATATCCA+AGG - tig0032970:27873-27892 Msa1450530:three_prime_UTR 25.0%
!! TATATATTCGGTTTGATGAT+TGG + tig0032970:27951-27970 None:intergenic 25.0%
! TCACCTGAAAAAAAAAATGA+AGG + tig0032970:28173-28192 None:intergenic 25.0%
!! AAAAAGAAAGTATAACCAGA+AGG + tig0032970:28344-28363 None:intergenic 25.0%
! AGTAGTTAAGAAAAAAGAAG+AGG + tig0032970:28368-28387 None:intergenic 25.0%
! GTTGCAAAGTAATTAATGTA+TGG + tig0032970:28425-28444 None:intergenic 25.0%
!!! AATCATTTGGTGCATTTATA+TGG + tig0032970:28544-28563 None:intergenic 25.0%
! TTAAAGTAAGGAATGGTTTA+AGG + tig0032970:28989-29008 None:intergenic 25.0%
! GTTCTATGATAAGCTAAATA+AGG + tig0032970:29084-29103 None:intergenic 25.0%
!! ATGTCCTTTTGTTAATTTCT+CGG - tig0032970:29177-29196 Msa1450530:intron 25.0%
! ATATAAGCAGTTTACACTTT+AGG - tig0032970:29362-29381 Msa1450530:intron 25.0%
! ATGATATATAGTCTTTGTTG+AGG - tig0032970:29399-29418 Msa1450530:intron 25.0%
!!! ATGAAATTTGCTAAGTTGAA+TGG - tig0032970:29616-29635 Msa1450530:intron 25.0%
!!! TGAAATTTGCTAAGTTGAAT+GGG - tig0032970:29617-29636 Msa1450530:intron 25.0%
! TTAGAATTTCAACAGATGAT+AGG - tig0032970:29847-29866 Msa1450530:intron 25.0%
! ATCTGGATAGAAAAAAGATA+GGG - tig0032970:29985-30004 Msa1450530:intron 25.0%
! TCAGTAATAAGTATCAACTA+AGG - tig0032970:30055-30074 Msa1450530:intron 25.0%
!!! CAAATTTTAGTTGAAGTTGA+TGG - tig0032970:30632-30651 Msa1450530:intron 25.0%
!! ATTAAGGATAAAAGGTACAA+TGG + tig0032970:30905-30924 None:intergenic 25.0%
!!! AATCAATTTTTTTTTCTCCG+AGG - tig0032970:30997-31016 Msa1450530:intron 25.0%
!! GACATTTTTCACAAAGAAAA+AGG - tig0032970:31061-31080 Msa1450530:intron 25.0%
!! CATTTTGAATTGTTGAAACA+GGG + tig0032970:31192-31211 None:intergenic 25.0%
!! TCATTTTGAATTGTTGAAAC+AGG + tig0032970:31193-31212 None:intergenic 25.0%
!!! TATGGTTTTCTAGTTCATTT+TGG - tig0032970:31217-31236 Msa1450530:CDS 25.0%
! AAAGTATGTCACATATCAAA+AGG + tig0032970:31247-31266 None:intergenic 25.0%
! CAGAAATGAAAAAAAGTCAT+GGG + tig0032970:31434-31453 None:intergenic 25.0%
! TCAGAAATGAAAAAAAGTCA+TGG + tig0032970:31435-31454 None:intergenic 25.0%
GATTATGTGTTGTGAAAGAA+AGG + tig0032970:27857-27876 None:intergenic 30.0%
CTGATTGATTGATAGATAGA+TGG + tig0032970:27916-27935 None:intergenic 30.0%
AGAGGACGACATTATATATT+CGG + tig0032970:27963-27982 None:intergenic 30.0%
! TCTAAGTAGTATAGCTTTTG+TGG - tig0032970:28450-28469 Msa1450530:intron 30.0%
!!! CATTTTTTTTTTCTTGCAGC+AGG - tig0032970:28481-28500 Msa1450530:intron 30.0%
! TCATCATAAAATTTGGAGCT+GGG + tig0032970:28520-28539 None:intergenic 30.0%
! TTCATCATAAAATTTGGAGC+TGG + tig0032970:28521-28540 None:intergenic 30.0%
!!! AAAACCATCGTTTTGATTGA+GGG + tig0032970:28676-28695 None:intergenic 30.0%
!!! AAAAACCATCGTTTTGATTG+AGG + tig0032970:28677-28696 None:intergenic 30.0%
!! CTTCTAAAATATTGTTCGGT+TGG - tig0032970:28717-28736 Msa1450530:intron 30.0%
! TTTATGTGGTTGCTATTGAT+TGG - tig0032970:28878-28897 Msa1450530:intron 30.0%
! TTCCACTTTCTTTTGGTAAA+AGG - tig0032970:28930-28949 Msa1450530:intron 30.0%
! TTCCTTTTACCAAAAGAAAG+TGG + tig0032970:28935-28954 None:intergenic 30.0%
! ACTTTCTTTTGGTAAAAGGA+AGG - tig0032970:28934-28953 Msa1450530:intron 30.0%
! AAAAGGAAGGAAGTCTTTTA+TGG - tig0032970:28947-28966 Msa1450530:intron 30.0%
CATAGAACAGTTTGTAATAC+TGG - tig0032970:29096-29115 Msa1450530:intron 30.0%
TGTACCGAGAAATTAACAAA+AGG + tig0032970:29184-29203 None:intergenic 30.0%
ATAGAGATGAAAGCAAACTT+AGG - tig0032970:29215-29234 Msa1450530:CDS 30.0%
TGTAAGATGAAAATATGTGG+TGG - tig0032970:29276-29295 Msa1450530:intron 30.0%
TAAACTGCTTATATAGTGAC+CGG + tig0032970:29356-29375 None:intergenic 30.0%
! AAATTTTGCTTATAATCCGG+AGG - tig0032970:29449-29468 Msa1450530:intron 30.0%
! AATTTTGCTTATAATCCGGA+GGG - tig0032970:29450-29469 Msa1450530:intron 30.0%
!! CTTTTGTTTAATATACCCTC+CGG + tig0032970:29468-29487 None:intergenic 30.0%
AAATAAGCAACACATTTGCA+TGG - tig0032970:29665-29684 Msa1450530:intron 30.0%
!!! TATAAACTTTTGAAGCTCCT+CGG - tig0032970:29689-29708 Msa1450530:intron 30.0%
ATCCAGACTTTAATTATACG+TGG + tig0032970:29967-29986 None:intergenic 30.0%
GTATAATTAAAGTCTGGATC+TGG - tig0032970:29968-29987 Msa1450530:intron 30.0%
GATCTGGATAGAAAAAAGAT+AGG - tig0032970:29984-30003 Msa1450530:intron 30.0%
TTTAAACAACTACTATTCCG+GGG + tig0032970:30024-30043 None:intergenic 30.0%
CTTTAAACAACTACTATTCC+GGG + tig0032970:30025-30044 None:intergenic 30.0%
! GCTTTAAACAACTACTATTC+CGG + tig0032970:30026-30045 None:intergenic 30.0%
!!! TCTGTTACCTTTTTTTCATG+AGG + tig0032970:30108-30127 None:intergenic 30.0%
TATAAGTTAAGGAGAAAAGG+AGG + tig0032970:30497-30516 None:intergenic 30.0%
!! AACATTTTTCAGCGAGAATA+GGG + tig0032970:31381-31400 None:intergenic 30.0%
!! AAACATTTTTCAGCGAGAAT+AGG + tig0032970:31382-31401 None:intergenic 30.0%
TGTATCATTCTTCTTTATCC+AGG - tig0032970:31469-31488 Msa1450530:CDS 30.0%
! TTTTATGCTTCTGCTAATCT+TGG - tig0032970:31527-31546 Msa1450530:five_prime_UTR 30.0%
TAGAGATTGATGCATTAGTA+GGG + tig0032970:31560-31579 None:intergenic 30.0%
ATAGAGATTGATGCATTAGT+AGG + tig0032970:31561-31580 None:intergenic 30.0%
GGTAGTACTAAGGAAATTAA+AGG + tig0032970:31703-31722 None:intergenic 30.0%
ATTAGATAAGTAACCAGCTA+CGG + tig0032970:31724-31743 None:intergenic 30.0%
GATTATGTGTTGTGAAAGAA+AGG + tig0032970:27857-27876 None:intergenic 30.0%
CTGATTGATTGATAGATAGA+TGG + tig0032970:27916-27935 None:intergenic 30.0%
AGAGGACGACATTATATATT+CGG + tig0032970:27963-27982 None:intergenic 30.0%
! TCTAAGTAGTATAGCTTTTG+TGG - tig0032970:28450-28469 Msa1450530:intron 30.0%
!!! CATTTTTTTTTTCTTGCAGC+AGG - tig0032970:28481-28500 Msa1450530:intron 30.0%
! TCATCATAAAATTTGGAGCT+GGG + tig0032970:28520-28539 None:intergenic 30.0%
! TTCATCATAAAATTTGGAGC+TGG + tig0032970:28521-28540 None:intergenic 30.0%
!!! AAAACCATCGTTTTGATTGA+GGG + tig0032970:28676-28695 None:intergenic 30.0%
!!! AAAAACCATCGTTTTGATTG+AGG + tig0032970:28677-28696 None:intergenic 30.0%
!! CTTCTAAAATATTGTTCGGT+TGG - tig0032970:28717-28736 Msa1450530:intron 30.0%
! TTTATGTGGTTGCTATTGAT+TGG - tig0032970:28878-28897 Msa1450530:intron 30.0%
! TTCCACTTTCTTTTGGTAAA+AGG - tig0032970:28930-28949 Msa1450530:intron 30.0%
! TTCCTTTTACCAAAAGAAAG+TGG + tig0032970:28935-28954 None:intergenic 30.0%
! ACTTTCTTTTGGTAAAAGGA+AGG - tig0032970:28934-28953 Msa1450530:intron 30.0%
! AAAAGGAAGGAAGTCTTTTA+TGG - tig0032970:28947-28966 Msa1450530:intron 30.0%
CATAGAACAGTTTGTAATAC+TGG - tig0032970:29096-29115 Msa1450530:intron 30.0%
TGTACCGAGAAATTAACAAA+AGG + tig0032970:29184-29203 None:intergenic 30.0%
ATAGAGATGAAAGCAAACTT+AGG - tig0032970:29215-29234 Msa1450530:CDS 30.0%
TGTAAGATGAAAATATGTGG+TGG - tig0032970:29276-29295 Msa1450530:intron 30.0%
TAAACTGCTTATATAGTGAC+CGG + tig0032970:29356-29375 None:intergenic 30.0%
! AAATTTTGCTTATAATCCGG+AGG - tig0032970:29449-29468 Msa1450530:intron 30.0%
! AATTTTGCTTATAATCCGGA+GGG - tig0032970:29450-29469 Msa1450530:intron 30.0%
!! CTTTTGTTTAATATACCCTC+CGG + tig0032970:29468-29487 None:intergenic 30.0%
AAATAAGCAACACATTTGCA+TGG - tig0032970:29665-29684 Msa1450530:intron 30.0%
!!! TATAAACTTTTGAAGCTCCT+CGG - tig0032970:29689-29708 Msa1450530:intron 30.0%
ATCCAGACTTTAATTATACG+TGG + tig0032970:29967-29986 None:intergenic 30.0%
GTATAATTAAAGTCTGGATC+TGG - tig0032970:29968-29987 Msa1450530:intron 30.0%
GATCTGGATAGAAAAAAGAT+AGG - tig0032970:29984-30003 Msa1450530:intron 30.0%
TTTAAACAACTACTATTCCG+GGG + tig0032970:30024-30043 None:intergenic 30.0%
CTTTAAACAACTACTATTCC+GGG + tig0032970:30025-30044 None:intergenic 30.0%
! GCTTTAAACAACTACTATTC+CGG + tig0032970:30026-30045 None:intergenic 30.0%
!!! TCTGTTACCTTTTTTTCATG+AGG + tig0032970:30108-30127 None:intergenic 30.0%
TATAAGTTAAGGAGAAAAGG+AGG + tig0032970:30497-30516 None:intergenic 30.0%
!! AACATTTTTCAGCGAGAATA+GGG + tig0032970:31381-31400 None:intergenic 30.0%
!! AAACATTTTTCAGCGAGAAT+AGG + tig0032970:31382-31401 None:intergenic 30.0%
TGTATCATTCTTCTTTATCC+AGG - tig0032970:31469-31488 Msa1450530:CDS 30.0%
! TTTTATGCTTCTGCTAATCT+TGG - tig0032970:31527-31546 Msa1450530:five_prime_UTR 30.0%
TAGAGATTGATGCATTAGTA+GGG + tig0032970:31560-31579 None:intergenic 30.0%
ATAGAGATTGATGCATTAGT+AGG + tig0032970:31561-31580 None:intergenic 30.0%
GGTAGTACTAAGGAAATTAA+AGG + tig0032970:31703-31722 None:intergenic 30.0%
ATTAGATAAGTAACCAGCTA+CGG + tig0032970:31724-31743 None:intergenic 30.0%
! AAAAAAGCATATCCAAGGTG+TGG - tig0032970:27878-27897 Msa1450530:three_prime_UTR 35.0%
TTCAACCACAACATTATCCT+TGG - tig0032970:27982-28001 Msa1450530:intron 35.0%
TAGTGATGTTTCATACAGCA+AGG + tig0032970:28066-28085 None:intergenic 35.0%
! TAAGCTAGTGTTGAAAAGTG+GGG + tig0032970:28105-28124 None:intergenic 35.0%
! CTAAGCTAGTGTTGAAAAGT+GGG + tig0032970:28106-28125 None:intergenic 35.0%
!! TTTTCAACACTAGCTTAGCT+AGG - tig0032970:28108-28127 Msa1450530:intron 35.0%
! TTTCAACACTAGCTTAGCTA+GGG - tig0032970:28109-28128 Msa1450530:intron 35.0%
TGTCCCAAATGAAACTGATT+GGG + tig0032970:28294-28313 None:intergenic 35.0%
CAGAAGGTTATGATGATTTG+GGG + tig0032970:28328-28347 None:intergenic 35.0%
CCAGAAGGTTATGATGATTT+GGG + tig0032970:28329-28348 None:intergenic 35.0%
ACCAGAAGGTTATGATGATT+TGG + tig0032970:28330-28349 None:intergenic 35.0%
!!! TTTTTTTTTCTTGCAGCAGG+AGG - tig0032970:28484-28503 Msa1450530:intron 35.0%
! ATAAAATTTGGAGCTGGGTT+TGG + tig0032970:28515-28534 None:intergenic 35.0%
ATCTCACGTCTGTTTATGAT+TGG + tig0032970:28614-28633 None:intergenic 35.0%
!! GCACACTTTAAAGTAAGGAA+TGG + tig0032970:28996-29015 None:intergenic 35.0%
TTGCTTTCATCTCTATATGC+TGG + tig0032970:29211-29230 None:intergenic 35.0%
TTTCAACAGATGATAGGAGA+CGG - tig0032970:29853-29872 Msa1450530:intron 35.0%
CTCCACGTATAATTAAAGTC+TGG - tig0032970:29962-29981 Msa1450530:intron 35.0%
TTAAACAACTACTATTCCGG+GGG + tig0032970:30023-30042 None:intergenic 35.0%
AAAGGAGGATCATACATTCT+TGG + tig0032970:30482-30501 None:intergenic 35.0%
! GGGTTCAAGATCTGAATTTT+CGG - tig0032970:30582-30601 Msa1450530:intron 35.0%
TGCTATGATAATTTACCTGC+TGG + tig0032970:31349-31368 None:intergenic 35.0%
!! ACATTTTTCAGCGAGAATAG+GGG + tig0032970:31380-31399 None:intergenic 35.0%
TCATTCTTCTTTATCCAGGA+AGG - tig0032970:31473-31492 Msa1450530:CDS 35.0%
TCAGATTCTGATGAAAGATG+CGG - tig0032970:31502-31521 Msa1450530:five_prime_UTR 35.0%
AGGACTACTACATTATCACT+AGG - tig0032970:31613-31632 Msa1450530:five_prime_UTR 35.0%
! TTATCACTAGGTAGCTCTTT+TGG - tig0032970:31625-31644 Msa1450530:five_prime_UTR 35.0%
! TATCACTAGGTAGCTCTTTT+GGG - tig0032970:31626-31645 Msa1450530:five_prime_UTR 35.0%
! AAAAAAGCATATCCAAGGTG+TGG - tig0032970:27878-27897 Msa1450530:three_prime_UTR 35.0%
TTCAACCACAACATTATCCT+TGG - tig0032970:27982-28001 Msa1450530:intron 35.0%
TAGTGATGTTTCATACAGCA+AGG + tig0032970:28066-28085 None:intergenic 35.0%
! TAAGCTAGTGTTGAAAAGTG+GGG + tig0032970:28105-28124 None:intergenic 35.0%
! CTAAGCTAGTGTTGAAAAGT+GGG + tig0032970:28106-28125 None:intergenic 35.0%
!! TTTTCAACACTAGCTTAGCT+AGG - tig0032970:28108-28127 Msa1450530:intron 35.0%
! TTTCAACACTAGCTTAGCTA+GGG - tig0032970:28109-28128 Msa1450530:intron 35.0%
TGTCCCAAATGAAACTGATT+GGG + tig0032970:28294-28313 None:intergenic 35.0%
CAGAAGGTTATGATGATTTG+GGG + tig0032970:28328-28347 None:intergenic 35.0%
CCAGAAGGTTATGATGATTT+GGG + tig0032970:28329-28348 None:intergenic 35.0%
ACCAGAAGGTTATGATGATT+TGG + tig0032970:28330-28349 None:intergenic 35.0%
!!! TTTTTTTTTCTTGCAGCAGG+AGG - tig0032970:28484-28503 Msa1450530:intron 35.0%
! ATAAAATTTGGAGCTGGGTT+TGG + tig0032970:28515-28534 None:intergenic 35.0%
ATCTCACGTCTGTTTATGAT+TGG + tig0032970:28614-28633 None:intergenic 35.0%
!! GCACACTTTAAAGTAAGGAA+TGG + tig0032970:28996-29015 None:intergenic 35.0%
TTGCTTTCATCTCTATATGC+TGG + tig0032970:29211-29230 None:intergenic 35.0%
TTTCAACAGATGATAGGAGA+CGG - tig0032970:29853-29872 Msa1450530:intron 35.0%
CTCCACGTATAATTAAAGTC+TGG - tig0032970:29962-29981 Msa1450530:intron 35.0%
TTAAACAACTACTATTCCGG+GGG + tig0032970:30023-30042 None:intergenic 35.0%
AAAGGAGGATCATACATTCT+TGG + tig0032970:30482-30501 None:intergenic 35.0%
! GGGTTCAAGATCTGAATTTT+CGG - tig0032970:30582-30601 Msa1450530:intron 35.0%
TGCTATGATAATTTACCTGC+TGG + tig0032970:31349-31368 None:intergenic 35.0%
!! ACATTTTTCAGCGAGAATAG+GGG + tig0032970:31380-31399 None:intergenic 35.0%
TCATTCTTCTTTATCCAGGA+AGG - tig0032970:31473-31492 Msa1450530:CDS 35.0%
TCAGATTCTGATGAAAGATG+CGG - tig0032970:31502-31521 Msa1450530:five_prime_UTR 35.0%
AGGACTACTACATTATCACT+AGG - tig0032970:31613-31632 Msa1450530:five_prime_UTR 35.0%
! TTATCACTAGGTAGCTCTTT+TGG - tig0032970:31625-31644 Msa1450530:five_prime_UTR 35.0%
! TATCACTAGGTAGCTCTTTT+GGG - tig0032970:31626-31645 Msa1450530:five_prime_UTR 35.0%
GGATAATGTTGTGGTTGAAG+AGG + tig0032970:27981-28000 None:intergenic 40.0%
ACATAACAAAGTTGCTCGGA+AGG + tig0032970:28019-28038 None:intergenic 40.0%
GTGGACATAACAAAGTTGCT+CGG + tig0032970:28023-28042 None:intergenic 40.0%
GATGTTTCATACAGCAAGGA+TGG + tig0032970:28062-28081 None:intergenic 40.0%
! GCTAAGCTAGTGTTGAAAAG+TGG + tig0032970:28107-28126 None:intergenic 40.0%
AAGACTGTTACTGTGAGATG+CGG - tig0032970:28216-28235 Msa1450530:intron 40.0%
AAATGAAACTGATTGGGGGA+TGG + tig0032970:28288-28307 None:intergenic 40.0%
ATCCCCCAATCAGTTTCATT+TGG - tig0032970:28287-28306 Msa1450530:intron 40.0%
TCCCCCAATCAGTTTCATTT+GGG - tig0032970:28288-28307 Msa1450530:intron 40.0%
TCCCAAATGAAACTGATTGG+GGG + tig0032970:28292-28311 None:intergenic 40.0%
GTCCCAAATGAAACTGATTG+GGG + tig0032970:28293-28312 None:intergenic 40.0%
GTGTCCCAAATGAAACTGAT+TGG + tig0032970:28295-28314 None:intergenic 40.0%
CCCAAATCATCATAACCTTC+TGG - tig0032970:28326-28345 Msa1450530:intron 40.0%
! GGAGGCATAGAGAAATCATT+TGG + tig0032970:28557-28576 None:intergenic 40.0%
TCACGTCTGTTTATGATTGG+TGG + tig0032970:28611-28630 None:intergenic 40.0%
GTTTCCCTCAATCAAAACGA+TGG - tig0032970:28669-28688 Msa1450530:intron 40.0%
! TTGATTGGACAGTGTTGTTG+AGG - tig0032970:28893-28912 Msa1450530:intron 40.0%
AGAAAGTGGAACAAGACCAA+GGG + tig0032970:28921-28940 None:intergenic 40.0%
AAGAAAGTGGAACAAGACCA+AGG + tig0032970:28922-28941 None:intergenic 40.0%
!!! GGTCTTGTTCCACTTTCTTT+TGG - tig0032970:28923-28942 Msa1450530:intron 40.0%
!! GGCATGCACACTTTAAAGTA+AGG + tig0032970:29001-29020 None:intergenic 40.0%
AAACAAAGCCTCGTGAAGAA+GGG + tig0032970:29148-29167 None:intergenic 40.0%
AAAACAAAGCCTCGTGAAGA+AGG + tig0032970:29149-29168 None:intergenic 40.0%
!! GATGAAAATATGTGGTGGAC+AGG - tig0032970:29281-29300 Msa1450530:intron 40.0%
!! CCACATGTTTTTACACTCTC+CGG - tig0032970:29334-29353 Msa1450530:intron 40.0%
TTAGTACGGTACGAAGGAAT+TGG + tig0032970:29516-29535 None:intergenic 40.0%
! GAGAGAAAGCGTGTTTAGTA+CGG + tig0032970:29530-29549 None:intergenic 40.0%
TAGTCAACTCTCATCACTCT+AGG - tig0032970:29580-29599 Msa1450530:intron 40.0%
GGCTTTCAGAATGCAAAATG+TGG - tig0032970:29638-29657 Msa1450530:intron 40.0%
ATGAAGCGATTGTATGCTGA+GGG + tig0032970:30255-30274 None:intergenic 40.0%
GATTGACAGACTTAATGCGT+TGG + tig0032970:30423-30442 None:intergenic 40.0%
TCAATCCTGATATAACCCAC+AGG - tig0032970:30437-30456 Msa1450530:intron 40.0%
CAATCCTGATATAACCCACA+GGG - tig0032970:30438-30457 Msa1450530:intron 40.0%
CAGATCTTGAACCCAAGTTA+GGG + tig0032970:30576-30595 None:intergenic 40.0%
TCAGATCTTGAACCCAAGTT+AGG + tig0032970:30577-30596 None:intergenic 40.0%
!! TTGAAGTTGATGGTTCTCCT+CGG - tig0032970:30642-30661 Msa1450530:intron 40.0%
AAGGAGAAAAGGATGCTCTT+TGG - tig0032970:30737-30756 Msa1450530:intron 40.0%
TGAATTGTTGAAACAGGGCA+GGG + tig0032970:31187-31206 None:intergenic 40.0%
TTGAATTGTTGAAACAGGGC+AGG + tig0032970:31188-31207 None:intergenic 40.0%
ACATACTTTCTGTGTGACAG+TGG - tig0032970:31258-31277 Msa1450530:CDS 40.0%
CATACTTTCTGTGTGACAGT+GGG - tig0032970:31259-31278 Msa1450530:CDS 40.0%
AAAGTGAATGTGTGGGAAGT+GGG + tig0032970:31285-31304 None:intergenic 40.0%
TGAGACCAAAGTGAATGTGT+GGG + tig0032970:31292-31311 None:intergenic 40.0%
ATGAGACCAAAGTGAATGTG+TGG + tig0032970:31293-31312 None:intergenic 40.0%
GTCTTCTTCATAGTCTGATC+AGG + tig0032970:31317-31336 None:intergenic 40.0%
CAGATTCTGATGAAAGATGC+GGG - tig0032970:31503-31522 Msa1450530:five_prime_UTR 40.0%
GGATAATGTTGTGGTTGAAG+AGG + tig0032970:27981-28000 None:intergenic 40.0%
ACATAACAAAGTTGCTCGGA+AGG + tig0032970:28019-28038 None:intergenic 40.0%
GTGGACATAACAAAGTTGCT+CGG + tig0032970:28023-28042 None:intergenic 40.0%
GATGTTTCATACAGCAAGGA+TGG + tig0032970:28062-28081 None:intergenic 40.0%
! GCTAAGCTAGTGTTGAAAAG+TGG + tig0032970:28107-28126 None:intergenic 40.0%
AAGACTGTTACTGTGAGATG+CGG - tig0032970:28216-28235 Msa1450530:intron 40.0%
AAATGAAACTGATTGGGGGA+TGG + tig0032970:28288-28307 None:intergenic 40.0%
ATCCCCCAATCAGTTTCATT+TGG - tig0032970:28287-28306 Msa1450530:intron 40.0%
TCCCCCAATCAGTTTCATTT+GGG - tig0032970:28288-28307 Msa1450530:intron 40.0%
TCCCAAATGAAACTGATTGG+GGG + tig0032970:28292-28311 None:intergenic 40.0%
GTCCCAAATGAAACTGATTG+GGG + tig0032970:28293-28312 None:intergenic 40.0%
GTGTCCCAAATGAAACTGAT+TGG + tig0032970:28295-28314 None:intergenic 40.0%
CCCAAATCATCATAACCTTC+TGG - tig0032970:28326-28345 Msa1450530:intron 40.0%
! GGAGGCATAGAGAAATCATT+TGG + tig0032970:28557-28576 None:intergenic 40.0%
TCACGTCTGTTTATGATTGG+TGG + tig0032970:28611-28630 None:intergenic 40.0%
GTTTCCCTCAATCAAAACGA+TGG - tig0032970:28669-28688 Msa1450530:intron 40.0%
! TTGATTGGACAGTGTTGTTG+AGG - tig0032970:28893-28912 Msa1450530:intron 40.0%
AGAAAGTGGAACAAGACCAA+GGG + tig0032970:28921-28940 None:intergenic 40.0%
AAGAAAGTGGAACAAGACCA+AGG + tig0032970:28922-28941 None:intergenic 40.0%
!!! GGTCTTGTTCCACTTTCTTT+TGG - tig0032970:28923-28942 Msa1450530:intron 40.0%
!! GGCATGCACACTTTAAAGTA+AGG + tig0032970:29001-29020 None:intergenic 40.0%
AAACAAAGCCTCGTGAAGAA+GGG + tig0032970:29148-29167 None:intergenic 40.0%
AAAACAAAGCCTCGTGAAGA+AGG + tig0032970:29149-29168 None:intergenic 40.0%
!! GATGAAAATATGTGGTGGAC+AGG - tig0032970:29281-29300 Msa1450530:intron 40.0%
!! CCACATGTTTTTACACTCTC+CGG - tig0032970:29334-29353 Msa1450530:intron 40.0%
TTAGTACGGTACGAAGGAAT+TGG + tig0032970:29516-29535 None:intergenic 40.0%
! GAGAGAAAGCGTGTTTAGTA+CGG + tig0032970:29530-29549 None:intergenic 40.0%
TAGTCAACTCTCATCACTCT+AGG - tig0032970:29580-29599 Msa1450530:intron 40.0%
GGCTTTCAGAATGCAAAATG+TGG - tig0032970:29638-29657 Msa1450530:intron 40.0%
ATGAAGCGATTGTATGCTGA+GGG + tig0032970:30255-30274 None:intergenic 40.0%
GATTGACAGACTTAATGCGT+TGG + tig0032970:30423-30442 None:intergenic 40.0%
TCAATCCTGATATAACCCAC+AGG - tig0032970:30437-30456 Msa1450530:intron 40.0%
CAATCCTGATATAACCCACA+GGG - tig0032970:30438-30457 Msa1450530:intron 40.0%
CAGATCTTGAACCCAAGTTA+GGG + tig0032970:30576-30595 None:intergenic 40.0%
TCAGATCTTGAACCCAAGTT+AGG + tig0032970:30577-30596 None:intergenic 40.0%
!! TTGAAGTTGATGGTTCTCCT+CGG - tig0032970:30642-30661 Msa1450530:intron 40.0%
AAGGAGAAAAGGATGCTCTT+TGG - tig0032970:30737-30756 Msa1450530:intron 40.0%
TGAATTGTTGAAACAGGGCA+GGG + tig0032970:31187-31206 None:intergenic 40.0%
TTGAATTGTTGAAACAGGGC+AGG + tig0032970:31188-31207 None:intergenic 40.0%
ACATACTTTCTGTGTGACAG+TGG - tig0032970:31258-31277 Msa1450530:CDS 40.0%
CATACTTTCTGTGTGACAGT+GGG - tig0032970:31259-31278 Msa1450530:CDS 40.0%
AAAGTGAATGTGTGGGAAGT+GGG + tig0032970:31285-31304 None:intergenic 40.0%
TGAGACCAAAGTGAATGTGT+GGG + tig0032970:31292-31311 None:intergenic 40.0%
ATGAGACCAAAGTGAATGTG+TGG + tig0032970:31293-31312 None:intergenic 40.0%
GTCTTCTTCATAGTCTGATC+AGG + tig0032970:31317-31336 None:intergenic 40.0%
CAGATTCTGATGAAAGATGC+GGG - tig0032970:31503-31522 Msa1450530:five_prime_UTR 40.0%
AGAGAAAGAAAAGGGTTCCG+TGG - tig0032970:27717-27736 Msa1450530:three_prime_UTR 45.0%
AAAAGGGTTCCGTGGCAATA+TGG - tig0032970:27725-27744 Msa1450530:three_prime_UTR 45.0%
AACAGGGAACCATATTGCCA+CGG + tig0032970:27737-27756 None:intergenic 45.0%
AAAGCATATCCAAGGTGTGG+TGG - tig0032970:27881-27900 Msa1450530:three_prime_UTR 45.0%
ACAAGTTAACCACCACACCT+TGG + tig0032970:27893-27912 None:intergenic 45.0%
GTGGTCCAAGGATAATGTTG+TGG + tig0032970:27990-28009 None:intergenic 45.0%
AACAAAGTTGCTCGGAAGGA+GGG + tig0032970:28015-28034 None:intergenic 45.0%
TAACAAAGTTGCTCGGAAGG+AGG + tig0032970:28016-28035 None:intergenic 45.0%
! CTAGTGTTGAAAAGTGGGGA+TGG + tig0032970:28101-28120 None:intergenic 45.0%
GTCTTGAACAAGCTTGTGCA+AGG + tig0032970:28201-28220 None:intergenic 45.0%
AGTAATGCACGCATGTTGAC+TGG + tig0032970:28261-28280 None:intergenic 45.0%
ATTTCTCTATGCCTCCCACT+AGG - tig0032970:28561-28580 Msa1450530:intron 45.0%
TCATCAGCTACAGTCCTAGT+GGG + tig0032970:28578-28597 None:intergenic 45.0%
! CTGTTTATGATTGGTGGTCG+TGG + tig0032970:28605-28624 None:intergenic 45.0%
GATGCATGTAGGAGCAATGT+GGG - tig0032970:29303-29322 Msa1450530:intron 45.0%
! CCGGAGAGTGTAAAAACATG+TGG + tig0032970:29337-29356 None:intergenic 45.0%
! GGAACTCTCTGTCTTTTCTC+TGG + tig0032970:30234-30253 None:intergenic 45.0%
GATGAAGCGATTGTATGCTG+AGG + tig0032970:30256-30275 None:intergenic 45.0%
TCTAAATACGGTCCATCTGC+AGG - tig0032970:30389-30408 Msa1450530:intron 45.0%
CTAAATACGGTCCATCTGCA+GGG - tig0032970:30390-30409 Msa1450530:intron 45.0%
TTCTCCGAGGTTTGCATACT+CGG - tig0032970:31010-31029 Msa1450530:intron 45.0%
TAAGCCGAGTATGCAAACCT+CGG + tig0032970:31017-31036 None:intergenic 45.0%
AGGGCAGGGAAATACAATCA+TGG + tig0032970:31173-31192 None:intergenic 45.0%
CAAAGTGAATGTGTGGGAAG+TGG + tig0032970:31286-31305 None:intergenic 45.0%
CACTTCCCACACATTCACTT+TGG - tig0032970:31284-31303 Msa1450530:intron 45.0%
GAATCTGATCATCTCCTTCC+TGG + tig0032970:31490-31509 None:intergenic 45.0%
TTCCTTAGTACTACCGTAGC+TGG - tig0032970:31708-31727 Msa1450530:five_prime_UTR 45.0%
AACCAGCTACGGTAGTACTA+AGG + tig0032970:31713-31732 None:intergenic 45.0%
AGAGAAAGAAAAGGGTTCCG+TGG - tig0032970:27717-27736 Msa1450530:three_prime_UTR 45.0%
AAAAGGGTTCCGTGGCAATA+TGG - tig0032970:27725-27744 Msa1450530:three_prime_UTR 45.0%
AACAGGGAACCATATTGCCA+CGG + tig0032970:27737-27756 None:intergenic 45.0%
AAAGCATATCCAAGGTGTGG+TGG - tig0032970:27881-27900 Msa1450530:three_prime_UTR 45.0%
ACAAGTTAACCACCACACCT+TGG + tig0032970:27893-27912 None:intergenic 45.0%
GTGGTCCAAGGATAATGTTG+TGG + tig0032970:27990-28009 None:intergenic 45.0%
AACAAAGTTGCTCGGAAGGA+GGG + tig0032970:28015-28034 None:intergenic 45.0%
TAACAAAGTTGCTCGGAAGG+AGG + tig0032970:28016-28035 None:intergenic 45.0%
! CTAGTGTTGAAAAGTGGGGA+TGG + tig0032970:28101-28120 None:intergenic 45.0%
GTCTTGAACAAGCTTGTGCA+AGG + tig0032970:28201-28220 None:intergenic 45.0%
AGTAATGCACGCATGTTGAC+TGG + tig0032970:28261-28280 None:intergenic 45.0%
ATTTCTCTATGCCTCCCACT+AGG - tig0032970:28561-28580 Msa1450530:intron 45.0%
TCATCAGCTACAGTCCTAGT+GGG + tig0032970:28578-28597 None:intergenic 45.0%
! CTGTTTATGATTGGTGGTCG+TGG + tig0032970:28605-28624 None:intergenic 45.0%
GATGCATGTAGGAGCAATGT+GGG - tig0032970:29303-29322 Msa1450530:intron 45.0%
! CCGGAGAGTGTAAAAACATG+TGG + tig0032970:29337-29356 None:intergenic 45.0%
! GGAACTCTCTGTCTTTTCTC+TGG + tig0032970:30234-30253 None:intergenic 45.0%
GATGAAGCGATTGTATGCTG+AGG + tig0032970:30256-30275 None:intergenic 45.0%
TCTAAATACGGTCCATCTGC+AGG - tig0032970:30389-30408 Msa1450530:intron 45.0%
CTAAATACGGTCCATCTGCA+GGG - tig0032970:30390-30409 Msa1450530:intron 45.0%
TTCTCCGAGGTTTGCATACT+CGG - tig0032970:31010-31029 Msa1450530:intron 45.0%
TAAGCCGAGTATGCAAACCT+CGG + tig0032970:31017-31036 None:intergenic 45.0%
AGGGCAGGGAAATACAATCA+TGG + tig0032970:31173-31192 None:intergenic 45.0%
CAAAGTGAATGTGTGGGAAG+TGG + tig0032970:31286-31305 None:intergenic 45.0%
CACTTCCCACACATTCACTT+TGG - tig0032970:31284-31303 Msa1450530:intron 45.0%
GAATCTGATCATCTCCTTCC+TGG + tig0032970:31490-31509 None:intergenic 45.0%
TTCCTTAGTACTACCGTAGC+TGG - tig0032970:31708-31727 Msa1450530:five_prime_UTR 45.0%
AACCAGCTACGGTAGTACTA+AGG + tig0032970:31713-31732 None:intergenic 45.0%
!! AGCAAGGATGGTGTCACAGA+TGG + tig0032970:28050-28069 None:intergenic 50.0%
CTCATCAGCTACAGTCCTAG+TGG + tig0032970:28579-28598 None:intergenic 50.0%
! CAGTGTTGTTGAGGTACCCT+TGG - tig0032970:28902-28921 Msa1450530:intron 50.0%
GGATGCATGTAGGAGCAATG+TGG - tig0032970:29302-29321 Msa1450530:intron 50.0%
GCGTGTTTAGTACGGTACGA+AGG + tig0032970:29522-29541 None:intergenic 50.0%
ACACGTTCATGCAGTTACCG+AGG + tig0032970:29709-29728 None:intergenic 50.0%
!! AGGGTACTTTTCTTCTCCCC+CGG - tig0032970:30004-30023 Msa1450530:intron 50.0%
!!! CTCTGTCTTTTCTCTGGAGC+TGG + tig0032970:30228-30247 None:intergenic 50.0%
! GCTTCCCTGTGGGTTATATC+AGG + tig0032970:30445-30464 None:intergenic 50.0%
GTGAGAGACACTCATTACCG+AGG + tig0032970:30662-30681 None:intergenic 50.0%
GAAGACAAATGTGTGCCAGC+AGG - tig0032970:31331-31350 Msa1450530:intron 50.0%
!! AGCAAGGATGGTGTCACAGA+TGG + tig0032970:28050-28069 None:intergenic 50.0%
CTCATCAGCTACAGTCCTAG+TGG + tig0032970:28579-28598 None:intergenic 50.0%
! CAGTGTTGTTGAGGTACCCT+TGG - tig0032970:28902-28921 Msa1450530:intron 50.0%
GGATGCATGTAGGAGCAATG+TGG - tig0032970:29302-29321 Msa1450530:intron 50.0%
GCGTGTTTAGTACGGTACGA+AGG + tig0032970:29522-29541 None:intergenic 50.0%
ACACGTTCATGCAGTTACCG+AGG + tig0032970:29709-29728 None:intergenic 50.0%
!! AGGGTACTTTTCTTCTCCCC+CGG - tig0032970:30004-30023 Msa1450530:intron 50.0%
!!! CTCTGTCTTTTCTCTGGAGC+TGG + tig0032970:30228-30247 None:intergenic 50.0%
! GCTTCCCTGTGGGTTATATC+AGG + tig0032970:30445-30464 None:intergenic 50.0%
GTGAGAGACACTCATTACCG+AGG + tig0032970:30662-30681 None:intergenic 50.0%
GAAGACAAATGTGTGCCAGC+AGG - tig0032970:31331-31350 Msa1450530:intron 50.0%
AAAGTTGCTCGGAAGGAGGG+AGG + tig0032970:28012-28031 None:intergenic 55.0%
!! TGGTGTCACAGATGGTGCAG+TGG + tig0032970:28042-28061 None:intergenic 55.0%
TCAGCTACAGTCCTAGTGGG+AGG + tig0032970:28575-28594 None:intergenic 55.0%
!! GTGGTGGACAGGATGCATGT+AGG - tig0032970:29292-29311 Msa1450530:intron 55.0%
TTGGATCTCGTCCCTGCAGA+TGG + tig0032970:30404-30423 None:intergenic 55.0%
ATTCTTGGCAGCTGCGCTGA+AGG + tig0032970:30467-30486 None:intergenic 55.0%
AAAGTTGCTCGGAAGGAGGG+AGG + tig0032970:28012-28031 None:intergenic 55.0%
!! TGGTGTCACAGATGGTGCAG+TGG + tig0032970:28042-28061 None:intergenic 55.0%
TCAGCTACAGTCCTAGTGGG+AGG + tig0032970:28575-28594 None:intergenic 55.0%
!! GTGGTGGACAGGATGCATGT+AGG - tig0032970:29292-29311 Msa1450530:intron 55.0%
TTGGATCTCGTCCCTGCAGA+TGG + tig0032970:30404-30423 None:intergenic 55.0%
ATTCTTGGCAGCTGCGCTGA+AGG + tig0032970:30467-30486 None:intergenic 55.0%
TGCGCTGAAGGCTTCCCTGT+GGG + tig0032970:30455-30474 None:intergenic 60.0%
TGCGCTGAAGGCTTCCCTGT+GGG + tig0032970:30455-30474 None:intergenic 60.0%
GGAAGGAGGGAGGTGGTCCA+AGG + tig0032970:28002-28021 None:intergenic 65.0%
GTTGCTCGGAAGGAGGGAGG+TGG + tig0032970:28009-28028 None:intergenic 65.0%
GGGCACAGCCCTTCTTCACG+AGG - tig0032970:29137-29156 Msa1450530:intron 65.0%
CTGCGCTGAAGGCTTCCCTG+TGG + tig0032970:30456-30475 None:intergenic 65.0%
GGAAGGAGGGAGGTGGTCCA+AGG + tig0032970:28002-28021 None:intergenic 65.0%
GTTGCTCGGAAGGAGGGAGG+TGG + tig0032970:28009-28028 None:intergenic 65.0%
GGGCACAGCCCTTCTTCACG+AGG - tig0032970:29137-29156 Msa1450530:intron 65.0%
CTGCGCTGAAGGCTTCCCTG+TGG + tig0032970:30456-30475 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0032970 gene 27696 31773 27696 ID=Msa1450530;Name=Msa1450530
tig0032970 mRNA 27696 31773 27696 ID=Msa1450530-mRNA-1;Parent=Msa1450530;Name=Msa1450530-mRNA-1;_AED=0.08;_eAED=0.08;_QI=275|1|1|1|1|1|7|208|219
tig0032970 exon 27696 27978 27696 ID=Msa1450530-mRNA-1:exon:17518;Parent=Msa1450530-mRNA-1
tig0032970 exon 28117 28191 28117 ID=Msa1450530-mRNA-1:exon:17517;Parent=Msa1450530-mRNA-1
tig0032970 exon 28983 29058 28983 ID=Msa1450530-mRNA-1:exon:17516;Parent=Msa1450530-mRNA-1
tig0032970 exon 29192 29240 29192 ID=Msa1450530-mRNA-1:exon:17515;Parent=Msa1450530-mRNA-1
tig0032970 exon 30843 30969 30843 ID=Msa1450530-mRNA-1:exon:17514;Parent=Msa1450530-mRNA-1
tig0032970 exon 31122 31280 31122 ID=Msa1450530-mRNA-1:exon:17513;Parent=Msa1450530-mRNA-1
tig0032970 exon 31400 31773 31400 ID=Msa1450530-mRNA-1:exon:17512;Parent=Msa1450530-mRNA-1
tig0032970 five_prime_UTR 31499 31773 31499 ID=Msa1450530-mRNA-1:five_prime_utr;Parent=Msa1450530-mRNA-1
tig0032970 CDS 31400 31498 31400 ID=Msa1450530-mRNA-1:cds;Parent=Msa1450530-mRNA-1
tig0032970 CDS 31122 31280 31122 ID=Msa1450530-mRNA-1:cds;Parent=Msa1450530-mRNA-1
tig0032970 CDS 30843 30969 30843 ID=Msa1450530-mRNA-1:cds;Parent=Msa1450530-mRNA-1
tig0032970 CDS 29192 29240 29192 ID=Msa1450530-mRNA-1:cds;Parent=Msa1450530-mRNA-1
tig0032970 CDS 28983 29058 28983 ID=Msa1450530-mRNA-1:cds;Parent=Msa1450530-mRNA-1
tig0032970 CDS 28117 28191 28117 ID=Msa1450530-mRNA-1:cds;Parent=Msa1450530-mRNA-1
tig0032970 CDS 27904 27978 27904 ID=Msa1450530-mRNA-1:cds;Parent=Msa1450530-mRNA-1
tig0032970 three_prime_UTR 27696 27903 27696 ID=Msa1450530-mRNA-1:three_prime_utr;Parent=Msa1450530-mRNA-1
Gene Sequence

>Msa1450530

ATGTCGTCCTCTTCAACCACAACATTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTCCACTGCACCATCTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACTGTTACTGTGAGATGCGGTCATTGCACTAATCTGCTTCCAGTCAACATGCGTGCATTACTTCTGCCATCCCCCAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAAATCATCATAACCTTCTGCAGGAGGAGATGCCAAACCCAGCTCCAAATTTTATGATGAACCATATAAATGCACCAAATGATTTCTCTATGCCTCCCACTAGGACTGTAGCTGATGAGCTTCCACGACCACCAATCATAAACAGACCTCCAGAGAAAAGACAGAGAGTTCCCTCAGCATACAATCGCTTCATCAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGATGATCAGATTCTGATGAAAGATGCGGGATTTTATGCTTCTGCTAATCTTGGTGTTTCGCCCTACTAA
Protein sequence

>Msa1450530

MSSSSTTTLSLDHLPPSEQLCYVHCTICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPNHHNLLQEEMPNPAPNFMMNHINAPNDFSMPPTRTVADELPRPPIINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGDDQILMKDAGFYASANLGVSPY*