AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1266070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266070 MtrunA17_Chr4g0070961 93.134 335 19 1 1 335 1 331 0.0 640
Msa1266070 MtrunA17_Chr4g0067151 34.783 92 53 1 164 248 67 158 1.20e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266070 AT2G19430.1 61.230 374 133 5 4 376 1 363 5.27e-163 461
Msa1266070 AT3G49660.1 40.000 75 45 0 174 248 77 151 6.40e-12 66.2

Find 125 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTCTAATCACAATATT+TGG 0.075756 8_2:-70792461 Msa1266070:three_prime_UTR
CATACAAACTCGTTCTAAAA+AGG 0.203211 8_2:+70792420 None:intergenic
GCAAAACATTTGAAGTTAAA+AGG 0.211891 8_2:-70794447 Msa1266070:CDS
AGGATGGGACAACACGAATT+TGG 0.216018 8_2:-70794674 Msa1266070:CDS
TGCTCACTACTTGTGCTTAT+TGG 0.233705 8_2:-70792397 Msa1266070:three_prime_UTR
ATGTCAGATTAGAATTCTTT+AGG 0.235444 8_2:+70792524 None:intergenic
TCCTCTCTCTTTGTGTAAAC+AGG 0.279060 8_2:+70792618 None:intergenic
TAGATTTATAATTGTTGATT+TGG 0.283496 8_2:-70792816 Msa1266070:three_prime_UTR
CTCTTTGTGTAAACAGGTTC+AGG 0.284936 8_2:+70792624 None:intergenic
TGTCAGATTAGAATTCTTTA+GGG 0.299242 8_2:+70792525 None:intergenic
TAAAATGCAAACCAGGATTA+AGG 0.306569 8_2:-70792647 Msa1266070:three_prime_UTR
GGATGGGACAACACGAATTT+GGG 0.307224 8_2:-70794673 Msa1266070:CDS
GTGGATGTAATCTCGCAATT+TGG 0.311284 8_2:-70792954 Msa1266070:CDS
TTCCTCTAATCACAATATTT+GGG 0.314186 8_2:-70792460 Msa1266070:three_prime_UTR
GTTGTCTTTCAGAGGTCCTT+GGG 0.323620 8_2:-70795943 Msa1266070:intron
CGCCAACTCCGCCACGGTAT+TGG 0.330763 8_2:+70792777 None:intergenic
AACGATGTGCAGATCATAAC+AGG 0.337053 8_2:-70794702 Msa1266070:intron
GTTTAATGTTTCTAGGAAAC+TGG 0.340022 8_2:-70795633 Msa1266070:intron
TCTATCTCCTTACATCCATC+AGG 0.341273 8_2:-70793155 Msa1266070:CDS
GTAAATTGAAACCAACAAAA+TGG 0.346985 8_2:-70792693 Msa1266070:three_prime_UTR
TGTTGCTACAAGATAGCCTT+TGG 0.349472 8_2:+70792593 None:intergenic
TGTTGTCTTTCAGAGGTCCT+TGG 0.354263 8_2:-70795944 Msa1266070:intron
ATCCCAAATATTGTGATTAG+AGG 0.356269 8_2:+70792458 None:intergenic
CGCATCTTCGTTCCAGTTTG+TGG 0.356320 8_2:+70798729 None:intergenic
CTCTTCGTTGCTTCCAGTGA+TGG 0.369177 8_2:-70798604 Msa1266070:CDS
AATATTGTGATTAGAGGAAT+AGG 0.386278 8_2:+70792464 None:intergenic
ACGAAAATGCTCTCTTGCTC+AGG 0.401510 8_2:-70798218 Msa1266070:intron
GTGATTCTTGTGCATATTGT+TGG 0.401550 8_2:-70795758 Msa1266070:CDS
AGCGGAGATGGTGGAAGGGA+GGG 0.402085 8_2:+70798564 None:intergenic
ACAGCAATAGCATTATTCTC+AGG 0.410350 8_2:+70795903 None:intergenic
TGTTTGGTGACGCCACAAAC+TGG 0.414965 8_2:-70798741 Msa1266070:CDS
AGTTAAAAGGACCTGTTTCA+TGG 0.420518 8_2:-70794434 Msa1266070:CDS
AAGCGGAGATGGTGGAAGGG+AGG 0.424668 8_2:+70798563 None:intergenic
GTTATTGCCGTTGGTGGCTA+CGG 0.445837 8_2:-70792984 Msa1266070:CDS
ACAGAGCCAACCCATGAAAC+AGG 0.449169 8_2:+70794423 None:intergenic
TCAATTTACACTGAAGTATG+TGG 0.453283 8_2:+70792707 None:intergenic
TGCTCGCAACTCATCCAATC+AGG 0.461422 8_2:-70795559 Msa1266070:intron
TGCTTATTTCAAGCGCATCA+TGG 0.463772 8_2:-70798273 Msa1266070:CDS
CTTGACAGTTGTGGTGATGA+TGG 0.464399 8_2:-70797476 Msa1266070:intron
CACTGAAGTATGTGGGTTTG+AGG 0.464570 8_2:+70792715 None:intergenic
ACATACCCCTGATGGATGTA+AGG 0.465449 8_2:+70793148 None:intergenic
AAAGGACCTGTTTCATGGGT+TGG 0.466225 8_2:-70794429 Msa1266070:CDS
ATCCAATACCGTGGCGGAGT+TGG 0.471329 8_2:-70792779 Msa1266070:three_prime_UTR
TTTCAGGTTATTGCCGTTGG+TGG 0.474271 8_2:-70792990 Msa1266070:intron
GCATTTCAGATTCTGACAGT+TGG 0.475090 8_2:-70793257 Msa1266070:intron
TGATTCTTGTGCATATTGTT+GGG 0.475321 8_2:-70795757 Msa1266070:CDS
TGCGCTTGAAATAAGCAATC+TGG 0.475871 8_2:+70798279 None:intergenic
ACAGGTTCAGGCCTTAATCC+TGG 0.483482 8_2:+70792636 None:intergenic
AGCCCAAGCAGTTCTGAAAA+CGG 0.486915 8_2:+70798663 None:intergenic
GTTCTACAGGCTTGCAGTAG+TGG 0.489666 8_2:-70793874 Msa1266070:intron
TCGTTTCAGGTTATTGCCGT+TGG 0.495898 8_2:-70792993 Msa1266070:intron
TTCCACTCGAGCTTCTGTAC+AGG 0.497682 8_2:-70793800 Msa1266070:CDS
CTTTAGATGCAAGTGAGAGC+TGG 0.499219 8_2:-70794398 Msa1266070:CDS
GCTTATTTCAAGCGCATCAT+GGG 0.499422 8_2:-70798272 Msa1266070:CDS
AGAAGCGATGGAACCATCAC+TGG 0.501271 8_2:+70798591 None:intergenic
CGAGTGATGGGTACAATGTT+TGG 0.505525 8_2:-70798757 Msa1266070:exon
AAGTATAATATTTCTTCAGA+AGG 0.506098 8_2:-70797413 Msa1266070:intron
GAAAGATAGCGAGCGAGTGA+TGG 0.507336 8_2:-70798770 Msa1266070:exon
TTTAATGTGCACTCTGCAGC+AGG 0.510994 8_2:+70793826 None:intergenic
CAGCAATAGCATTATTCTCA+GGG 0.512448 8_2:+70795904 None:intergenic
TGCTATTGCTGTAAATACTC+AGG 0.516864 8_2:-70795892 Msa1266070:intron
CTAAACACTTACTTGTGTTG+AGG 0.519895 8_2:+70796376 None:intergenic
TTGTTGATTTGGCAGTAAAA+CGG 0.523170 8_2:-70792805 Msa1266070:three_prime_UTR
GCTTATGATGTCAAATTCTA+CGG 0.523884 8_2:-70798246 Msa1266070:CDS
GGTGATGATGGGCGGATTCG+AGG 0.525179 8_2:-70797464 Msa1266070:CDS
GTTAAAAGGACCTGTTTCAT+GGG 0.525575 8_2:-70794433 Msa1266070:CDS
TTTGAGCTTAGAAGCGGAGA+TGG 0.529273 8_2:+70798552 None:intergenic
ATCATAACAGGTTCAGAGGA+TGG 0.530894 8_2:-70794690 Msa1266070:CDS
AAAGATAGCGAGCGAGTGAT+GGG 0.532917 8_2:-70798769 Msa1266070:exon
AAATAGTTAGATTAGATGTA+CGG 0.537788 8_2:-70798818 Msa1266070:five_prime_UTR
TTAGAAGCGGAGATGGTGGA+AGG 0.541458 8_2:+70798559 None:intergenic
CAATTTACACTGAAGTATGT+GGG 0.542881 8_2:+70792708 None:intergenic
GATTGAGATTGAGATTGAGA+AGG 0.544014 8_2:+70798640 None:intergenic
CTATCTCCTTACATCCATCA+GGG 0.544650 8_2:-70793154 Msa1266070:CDS
TTGACAGTTGTGGTGATGAT+GGG 0.550182 8_2:-70797475 Msa1266070:intron
GGCGGATTCGAGGATGGAGA+TGG 0.554011 8_2:-70797454 Msa1266070:CDS
AGCCTGCCATGAAAAGCAAA+GGG 0.558307 8_2:-70792558 Msa1266070:three_prime_UTR
GGATTTACAACATCAAAGAC+GGG 0.559872 8_2:+70796397 None:intergenic
ATGTCAAAGCGATTGAGTAT+AGG 0.559972 8_2:+70793227 None:intergenic
TAGCCTGCCATGAAAAGCAA+AGG 0.562098 8_2:-70792559 Msa1266070:three_prime_UTR
AAGGAGATAGAAAAGGCTGA+TGG 0.563360 8_2:+70793167 None:intergenic
TTGTGATTAGAGGAATAGGA+AGG 0.570060 8_2:+70792468 None:intergenic
TCGGCATTAACAAAACCAAA+TGG 0.572784 8_2:+70798433 None:intergenic
AGGATTTACAACATCAAAGA+CGG 0.575778 8_2:+70796396 None:intergenic
AGGGAGGGAGTAAGAAGCGA+TGG 0.576885 8_2:+70798579 None:intergenic
TCATAACAGGTTCAGAGGAT+GGG 0.579441 8_2:-70794689 Msa1266070:CDS
TTGTGCATATTGTTGGGATG+CGG 0.581521 8_2:-70795751 Msa1266070:intron
TTGTCTTTCAGAGGTCCTTG+GGG 0.583505 8_2:-70795942 Msa1266070:intron
GAAGCAACGAAGAGAGATTG+AGG 0.587227 8_2:+70798613 None:intergenic
ATCTTGTTATACATTGAGCT+AGG 0.587875 8_2:+70792843 None:intergenic
AAAGGTCAAATATATGCTCT+CGG 0.588563 8_2:-70792745 Msa1266070:three_prime_UTR
GAGCACACGGTATTTGTGAA+AGG 0.590660 8_2:+70793192 None:intergenic
AAATTACGCCAACTCCGCCA+CGG 0.594357 8_2:+70792771 None:intergenic
TGGTGGCTACGGATGTCTTG+TGG 0.595306 8_2:-70792973 Msa1266070:CDS
ATGATGGGCGGATTCGAGGA+TGG 0.595758 8_2:-70797460 Msa1266070:CDS
AGATGCAAGTGAGAGCTGGT+TGG 0.596633 8_2:-70794394 Msa1266070:intron
GTGGACGTAATATATCACTT+TGG 0.597673 8_2:-70793855 Msa1266070:CDS
CTCAATCGCTTTGACATGAA+CGG 0.599077 8_2:-70793221 Msa1266070:CDS
ACAATATGCACAAGAATCAC+CGG 0.601792 8_2:+70795761 None:intergenic
ATCCTGTACAGAAGCTCGAG+TGG 0.602891 8_2:+70793798 None:intergenic
GAGATAGAAAAGGCTGATGG+AGG 0.605923 8_2:+70793170 None:intergenic
ATAGCATTATTCTCAGGGAG+AGG 0.608224 8_2:+70795909 None:intergenic
TAGAAGCGGAGATGGTGGAA+GGG 0.611252 8_2:+70798560 None:intergenic
AAGGCTGATGGAGGAGCACA+CGG 0.617050 8_2:+70793179 None:intergenic
GCAGATCATAACAGGTTCAG+AGG 0.625076 8_2:-70794694 Msa1266070:intron
GTCAGATTAGAATTCTTTAG+GGG 0.629936 8_2:+70792526 None:intergenic
ATGTGCACTCTGCAGCAGGA+AGG 0.630044 8_2:+70793830 None:intergenic
TGGATGTAAGGAGATAGAAA+AGG 0.632252 8_2:+70793160 None:intergenic
GAGCTTAGAAGCGGAGATGG+TGG 0.632261 8_2:+70798555 None:intergenic
ATGAAAATAAAATGCAAACC+AGG 0.636285 8_2:-70792654 Msa1266070:three_prime_UTR
CGGTATGTAAACACACAGGT+AGG 0.639203 8_2:-70798798 Msa1266070:five_prime_UTR
GTGAACTTAGCTAAACACAT+TGG 0.641035 8_2:+70792907 None:intergenic
GATTCGAGGATGGAGATGGA+AGG 0.643076 8_2:-70797450 Msa1266070:CDS
GGCATCGAAATGTGCACATG+TGG 0.648000 8_2:+70792928 None:intergenic
AAGACATCCGTAGCCACCAA+CGG 0.648786 8_2:+70792977 None:intergenic
ACAGTTGTGGTGATGATGGG+CGG 0.654434 8_2:-70797472 Msa1266070:intron
ACCTGTTTACACAAAGAGAG+AGG 0.662529 8_2:-70792619 Msa1266070:three_prime_UTR
GTAAACTTACTCATCCGCAT+CGG 0.667303 8_2:+70798414 None:intergenic
GATGGGACAACACGAATTTG+GGG 0.668428 8_2:-70794672 Msa1266070:intron
ACAAAGAGAGAGGAAGCCAA+AGG 0.671366 8_2:-70792609 Msa1266070:three_prime_UTR
TATCTCCTTACATCCATCAG+GGG 0.672240 8_2:-70793153 Msa1266070:intron
AGAGGTGAAAGTGAACCCCA+AGG 0.713975 8_2:+70795927 None:intergenic
TGTACGGTATGTAAACACAC+AGG 0.722539 8_2:-70798802 Msa1266070:five_prime_UTR
AAACGGTGTATCCAATACCG+TGG 0.727959 8_2:-70792788 Msa1266070:three_prime_UTR
CGGTGTATCCAATACCGTGG+CGG 0.743826 8_2:-70792785 Msa1266070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGTTAATTATTGTTATT+AGG - chr8_2:70792847-70792866 Msa1266070:three_prime_UTR 10.0%
!!! ATTGTTAATTATTGTTATTA+GGG - chr8_2:70792848-70792867 Msa1266070:three_prime_UTR 10.0%
!! GTTTATAAAAAAATCTTAAA+GGG + chr8_2:70793412-70793431 None:intergenic 10.0%
!! TGTTTATAAAAAAATCTTAA+AGG + chr8_2:70793413-70793432 None:intergenic 10.0%
!! TAAATGTTTAATATTAAATC+TGG - chr8_2:70794089-70794108 Msa1266070:intron 10.0%
!! ATATTGGTATAAAAATAAAT+AGG + chr8_2:70794264-70794283 None:intergenic 10.0%
!!! CTATTTTAAATTATTTTGTT+AGG + chr8_2:70795007-70795026 None:intergenic 10.0%
!!! CTAACAAAATAATTTAAAAT+AGG - chr8_2:70795005-70795024 Msa1266070:intron 10.0%
!! AAAAAAATTTACCTTATAAA+AGG - chr8_2:70796240-70796259 Msa1266070:intron 10.0%
!!! ATCAGTATTTTATTTTAACT+TGG - chr8_2:70793983-70794002 Msa1266070:intron 15.0%
!! TGAAGCTTAATATTTATATT+TGG + chr8_2:70794570-70794589 None:intergenic 15.0%
!!! TGATTATTTTATTGATGAAA+TGG + chr8_2:70797159-70797178 None:intergenic 15.0%
!! TATTAATTTAATATGTGTGA+TGG - chr8_2:70797588-70797607 Msa1266070:intron 15.0%
!! AATATTAACTTCAAAAAGAA+AGG - chr8_2:70797651-70797670 Msa1266070:intron 15.0%
!! AACAATAAAAAATATGAAGA+CGG + chr8_2:70797753-70797772 None:intergenic 15.0%
!!! TAGATTTATAATTGTTGATT+TGG - chr8_2:70798384-70798403 Msa1266070:intron 15.0%
!! AAATAGTTAGATTAGATGTA+CGG - chr8_2:70792382-70792401 Msa1266070:three_prime_UTR 20.0%
!!! AATCTCTCTTTCTTTTAATA+CGG + chr8_2:70792507-70792526 None:intergenic 20.0%
!! AAGTTCTCCAATATATATTA+TGG - chr8_2:70793123-70793142 Msa1266070:intron 20.0%
!!! GTTGTTTCCATAATATATAT+TGG + chr8_2:70793133-70793152 None:intergenic 20.0%
!!! GTTTTTACGTATTATTATAG+AGG - chr8_2:70793324-70793343 Msa1266070:intron 20.0%
!! ATAGAGGAAGATTAAAATAT+TGG - chr8_2:70793340-70793359 Msa1266070:intron 20.0%
!! AATATTCTGTTATCATAGTT+GGG + chr8_2:70793457-70793476 None:intergenic 20.0%
!! AAATATTCTGTTATCATAGT+TGG + chr8_2:70793458-70793477 None:intergenic 20.0%
!!! TTGTGTTACCATTTTTATTT+TGG - chr8_2:70793527-70793546 Msa1266070:intron 20.0%
!! TCAATTCTCCAAAATAAAAA+TGG + chr8_2:70793538-70793557 None:intergenic 20.0%
!! AACAAGCATTAATATAAATG+AGG - chr8_2:70793658-70793677 Msa1266070:intron 20.0%
!! ACAAGCATTAATATAAATGA+GGG - chr8_2:70793659-70793678 Msa1266070:intron 20.0%
!! AAGTATAATATTTCTTCAGA+AGG - chr8_2:70793787-70793806 Msa1266070:CDS 20.0%
!!! ATTTATTCATTTTCAAAGCA+TGG - chr8_2:70794043-70794062 Msa1266070:intron 20.0%
!! TTGTAATTATAGAGTTAAGA+TGG - chr8_2:70794150-70794169 Msa1266070:intron 20.0%
!! TCATGAAAAATCAATCATAT+TGG - chr8_2:70794208-70794227 Msa1266070:intron 20.0%
!! TTAAGAAAATGAAAATGAGA+TGG + chr8_2:70794476-70794495 None:intergenic 20.0%
!!! TAGTTTCTTAGTTTTTCTTT+TGG - chr8_2:70794717-70794736 Msa1266070:intron 20.0%
!! TGGAAAAATGAAAAAAAACT+CGG + chr8_2:70794914-70794933 None:intergenic 20.0%
!! AGTATACTCAGATAATATAT+AGG + chr8_2:70794941-70794960 None:intergenic 20.0%
!!! AAATAATTTAAAATAGGGCA+TGG - chr8_2:70795011-70795030 Msa1266070:intron 20.0%
!!! TTTATTTTTTACTTAACTGC+AGG - chr8_2:70795395-70795414 Msa1266070:intron 20.0%
!! TAAATTAAAAACGGTATTCA+AGG - chr8_2:70795590-70795609 Msa1266070:CDS 20.0%
!! AAATTAAAAACGGTATTCAA+GGG - chr8_2:70795591-70795610 Msa1266070:CDS 20.0%
!! TATATAAAGATGTTTCCATT+AGG + chr8_2:70795840-70795859 None:intergenic 20.0%
!! TTAATATACAAAGTTTCAAG+TGG + chr8_2:70795882-70795901 None:intergenic 20.0%
!! TTCATACTATTATATCTACT+AGG + chr8_2:70796058-70796077 None:intergenic 20.0%
!!! AAATAGTTTTTCCACAAAAA+AGG - chr8_2:70796336-70796355 Msa1266070:intron 20.0%
!!! ATTTTTTGGTGTAAATAAAC+TGG - chr8_2:70796623-70796642 Msa1266070:intron 20.0%
!! TATGTAAACCAAAAATACTA+GGG + chr8_2:70796870-70796889 None:intergenic 20.0%
!! ATATGTAAACCAAAAATACT+AGG + chr8_2:70796871-70796890 None:intergenic 20.0%
!! ATGCAGTTTATATAAAGATA+TGG - chr8_2:70796954-70796973 Msa1266070:intron 20.0%
!! TGCAGTTTATATAAAGATAT+GGG - chr8_2:70796955-70796974 Msa1266070:intron 20.0%
!!! CTTTTACTTTATTGTTCTTT+TGG - chr8_2:70796998-70797017 Msa1266070:intron 20.0%
!! ATCTAATTAAATGACAAACA+GGG + chr8_2:70797860-70797879 None:intergenic 20.0%
!! ATAAGATAGCTACAATAATA+GGG + chr8_2:70797906-70797925 None:intergenic 20.0%
!! AATAAGATAGCTACAATAAT+AGG + chr8_2:70797907-70797926 None:intergenic 20.0%
!! AAACTGTTTCCTATTAAAAA+TGG - chr8_2:70798085-70798104 Msa1266070:intron 20.0%
!! AACTGTTTCCTATTAAAAAT+GGG - chr8_2:70798086-70798105 Msa1266070:intron 20.0%
!!! TGATAATTTTTCCATTTTGT+TGG + chr8_2:70798521-70798540 None:intergenic 20.0%
! GTGAAATGATGAATTGAATA+AGG + chr8_2:70792692-70792711 None:intergenic 25.0%
! AAATAAGCTGTTATCCAAAT+AGG - chr8_2:70793258-70793277 Msa1266070:intron 25.0%
! AATAAGCTGTTATCCAAATA+GGG - chr8_2:70793259-70793278 Msa1266070:intron 25.0%
!! AAGTATCCTAGTTTAGAATT+AGG + chr8_2:70793285-70793304 None:intergenic 25.0%
! ACGTAAAAACTATATGAATG+TGG + chr8_2:70793314-70793333 None:intergenic 25.0%
!! ATCAATAGTGGAATTCTAAA+TGG + chr8_2:70793491-70793510 None:intergenic 25.0%
!! ATTTAGAATTCCACTATTGA+TGG - chr8_2:70793490-70793509 Msa1266070:intron 25.0%
! TAATACTAAACACAAACCAT+TGG + chr8_2:70793598-70793617 None:intergenic 25.0%
!! ATGGTTTGTGTTTAGTATTA+TGG - chr8_2:70793598-70793617 Msa1266070:intron 25.0%
!!! GTTTAGTATTATGGTTTTGA+AGG - chr8_2:70793607-70793626 Msa1266070:intron 25.0%
! TTCAAATTAGTTCATCCATT+TGG - chr8_2:70793838-70793857 Msa1266070:CDS 25.0%
! AGAAATAAAAGAGATCCAAA+TGG + chr8_2:70793856-70793875 None:intergenic 25.0%
! AAATGAATAAATCCAAGAGT+CGG + chr8_2:70794035-70794054 None:intergenic 25.0%
! AAGTACTTGAACTGAAATAT+TGG + chr8_2:70794280-70794299 None:intergenic 25.0%
! TACAATGTACAATGTGTTAT+TGG + chr8_2:70794330-70794349 None:intergenic 25.0%
! AGGGTAAAAAATATCATGAT+AGG + chr8_2:70794618-70794637 None:intergenic 25.0%
!!! TCTTAGTTTTTCTTTTGGAT+TGG - chr8_2:70794722-70794741 Msa1266070:intron 25.0%
! ATCAATTCCTGAAACATTAA+GGG + chr8_2:70794777-70794796 None:intergenic 25.0%
! TATCAATTCCTGAAACATTA+AGG + chr8_2:70794778-70794797 None:intergenic 25.0%
! TCTATAATTACTACAGAAGT+AGG - chr8_2:70794865-70794884 Msa1266070:intron 25.0%
! CTATAATTACTACAGAAGTA+GGG - chr8_2:70794866-70794885 Msa1266070:intron 25.0%
! TATAATTACTACAGAAGTAG+GGG - chr8_2:70794867-70794886 Msa1266070:intron 25.0%
! TCAGATAATATATAGGAAAC+TGG + chr8_2:70794934-70794953 None:intergenic 25.0%
!! AAGTATGATTTTACAACTGT+TGG - chr8_2:70795062-70795081 Msa1266070:intron 25.0%
!! CTAGAAACATTAAACTTGTT+AGG + chr8_2:70795562-70795581 None:intergenic 25.0%
! CTAACAAGTTTAATGTTTCT+AGG - chr8_2:70795560-70795579 Msa1266070:CDS 25.0%
! GGAAACTGGTAAATTAAAAA+CGG - chr8_2:70795581-70795600 Msa1266070:CDS 25.0%
!! AAAAAAGGAAAGGAAGTATA+AGG + chr8_2:70795680-70795699 None:intergenic 25.0%
! ACATTAAGTCAAAAAAGGAA+AGG + chr8_2:70795690-70795709 None:intergenic 25.0%
!!! TTCCTTTTTTGACTTAATGT+TGG - chr8_2:70795690-70795709 Msa1266070:intron 25.0%
! AACCAACATTAAGTCAAAAA+AGG + chr8_2:70795695-70795714 None:intergenic 25.0%
! TGCAGTTGAGATAAAATTAA+TGG - chr8_2:70796010-70796029 Msa1266070:intron 25.0%
! ATTTACCTTATAAAAGGTCA+TGG - chr8_2:70796246-70796265 Msa1266070:intron 25.0%
!!! TAAAGTTTTCACCTTTTTTG+TGG + chr8_2:70796350-70796369 None:intergenic 25.0%
! TTTAAATTCCACTATTCTTC+TGG - chr8_2:70796384-70796403 Msa1266070:intron 25.0%
! TAACTGCTGCAAAAAAAAAA+AGG + chr8_2:70796572-70796591 None:intergenic 25.0%
!!! GCAGTAATCATACTATTTTT+TGG - chr8_2:70796609-70796628 Msa1266070:intron 25.0%
!!! TTTAACTTCAAATGTTTTGC+TGG + chr8_2:70796753-70796772 None:intergenic 25.0%
!! GCAAAACATTTGAAGTTAAA+AGG - chr8_2:70796753-70796772 Msa1266070:intron 25.0%
! ATAAAATAATCACACCTTTC+TGG - chr8_2:70797167-70797186 Msa1266070:intron 25.0%
!! ATTTCAGTTCTTTTGAACAT+TGG - chr8_2:70797468-70797487 Msa1266070:CDS 25.0%
! TAACTTCAAAAAGAAAGGAT+AGG - chr8_2:70797656-70797675 Msa1266070:intron 25.0%
! CATCTAATTAAATGACAAAC+AGG + chr8_2:70797861-70797880 None:intergenic 25.0%
! ACTGTTTCCTATTAAAAATG+GGG - chr8_2:70798087-70798106 Msa1266070:intron 25.0%
!!! ATTCTAACCCCATTTTTAAT+AGG + chr8_2:70798097-70798116 None:intergenic 25.0%
!!! TTGAGCTAGGAATATTTTTT+GGG + chr8_2:70798347-70798366 None:intergenic 25.0%
!!! ATTGAGCTAGGAATATTTTT+TGG + chr8_2:70798348-70798367 None:intergenic 25.0%
! GTAAATTGAAACCAACAAAA+TGG - chr8_2:70798507-70798526 Msa1266070:intron 25.0%
! ATGAAAATAAAATGCAAACC+AGG - chr8_2:70798546-70798565 Msa1266070:intron 25.0%
! TGTCAGATTAGAATTCTTTA+GGG + chr8_2:70798678-70798697 None:intergenic 25.0%
! ATGTCAGATTAGAATTCTTT+AGG + chr8_2:70798679-70798698 None:intergenic 25.0%
! AATATTGTGATTAGAGGAAT+AGG + chr8_2:70798739-70798758 None:intergenic 25.0%
! ATTCCTCTAATCACAATATT+TGG - chr8_2:70798739-70798758 Msa1266070:CDS 25.0%
! TTCCTCTAATCACAATATTT+GGG - chr8_2:70798740-70798759 Msa1266070:CDS 25.0%
!!! ATACAAACTCGTTCTAAAAA+GGG + chr8_2:70798782-70798801 None:intergenic 25.0%
!! AACATTTTTGAGCTTAGAAG+CGG + chr8_2:70792657-70792676 None:intergenic 30.0%
!! TTTTATTTGTTGCAGCCATT+TGG - chr8_2:70792752-70792771 Msa1266070:three_prime_UTR 30.0%
GCTTATGATGTCAAATTCTA+CGG - chr8_2:70792954-70792973 Msa1266070:CDS 30.0%
AAAACTTACGACAGTAGATA+AGG + chr8_2:70793030-70793049 None:intergenic 30.0%
! GTAAGTTTTGCTAGATTGTT+TGG - chr8_2:70793041-70793060 Msa1266070:intron 30.0%
CAATCTTCATGCAATAATCA+GGG + chr8_2:70793909-70793928 None:intergenic 30.0%
ACAATCTTCATGCAATAATC+AGG + chr8_2:70793910-70793929 None:intergenic 30.0%
ATTAAATCTGGTAATTGCCA+AGG - chr8_2:70794101-70794120 Msa1266070:intron 30.0%
TTAAATCTGGTAATTGCCAA+GGG - chr8_2:70794102-70794121 Msa1266070:intron 30.0%
TGCAATGTACAATGTGTTAT+TGG + chr8_2:70794401-70794420 None:intergenic 30.0%
TACATTGCAAGACTCATAAA+AGG - chr8_2:70794412-70794431 Msa1266070:CDS 30.0%
!! TTGGATTGGTAATATGTTCA+AGG - chr8_2:70794736-70794755 Msa1266070:intron 30.0%
ATGATATCCCTTAATGTTTC+AGG - chr8_2:70794767-70794786 Msa1266070:intron 30.0%
AGGATTTACAACATCAAAGA+CGG + chr8_2:70794807-70794826 None:intergenic 30.0%
ATAAATAATAATGCCAGGTG+AGG + chr8_2:70794980-70794999 None:intergenic 30.0%
GTGCAATAAATAATAATGCC+AGG + chr8_2:70794985-70795004 None:intergenic 30.0%
TTCCTTTATTCCTCTATATG+TGG - chr8_2:70795202-70795221 Msa1266070:intron 30.0%
AACCACATATAGAGGAATAA+AGG + chr8_2:70795207-70795226 None:intergenic 30.0%
AATCAGAAAACCACATATAG+AGG + chr8_2:70795215-70795234 None:intergenic 30.0%
TAACGAGAGAGAAAAACATT+GGG + chr8_2:70795354-70795373 None:intergenic 30.0%
ATAACGAGAGAGAAAAACAT+TGG + chr8_2:70795355-70795374 None:intergenic 30.0%
TGATTCTTGTGCATATTGTT+GGG - chr8_2:70795443-70795462 Msa1266070:intron 30.0%
!! GTTTAATGTTTCTAGGAAAC+TGG - chr8_2:70795567-70795586 Msa1266070:CDS 30.0%
ACTGAAAATTGTTAAACCAG+AGG - chr8_2:70795719-70795738 Msa1266070:intron 30.0%
! TTTTGCATAGCTGTAAAAGT+TGG + chr8_2:70795766-70795785 None:intergenic 30.0%
AACTAAAACAATGAGCCTAA+TGG - chr8_2:70795822-70795841 Msa1266070:intron 30.0%
GTATGAAGAAAATAAGCGAA+TGG - chr8_2:70796071-70796090 Msa1266070:intron 30.0%
AAGGGGAAATGAGAAAAAAA+AGG - chr8_2:70796269-70796288 Msa1266070:intron 30.0%
AGGGGAAATGAGAAAAAAAA+GGG - chr8_2:70796270-70796289 Msa1266070:intron 30.0%
AGAAAGCAAGTTAAAATCTC+AGG + chr8_2:70796474-70796493 None:intergenic 30.0%
!!! ACTGGTTTTCTTAAATACAC+TGG - chr8_2:70796641-70796660 Msa1266070:intron 30.0%
! TATTTTCTAGATTGCAAGAG+TGG - chr8_2:70796705-70796724 Msa1266070:intron 30.0%
TTAGACATATTAGTCACTAC+TGG - chr8_2:70796919-70796938 Msa1266070:intron 30.0%
TAGACATATTAGTCACTACT+GGG - chr8_2:70796920-70796939 Msa1266070:intron 30.0%
!! TATGCATTGCTATTGGTTTA+TGG - chr8_2:70797042-70797061 Msa1266070:intron 30.0%
ACTAGATTGCATATAGATGA+AGG + chr8_2:70797222-70797241 None:intergenic 30.0%
CTTACATGCTTAGGAAATTA+TGG - chr8_2:70797248-70797267 Msa1266070:intron 30.0%
TCATAACTAATCACAGAACT+AGG + chr8_2:70797293-70797312 None:intergenic 30.0%
TCGACAATAATCAAGTTAGT+TGG - chr8_2:70797432-70797451 Msa1266070:CDS 30.0%
TTAGAATTGGGAATATTCAG+AGG + chr8_2:70797499-70797518 None:intergenic 30.0%
ACAAAGAACATTGAACGAAA+TGG + chr8_2:70797566-70797585 None:intergenic 30.0%
!! ATTTAATATGTGTGATGGAC+TGG - chr8_2:70797593-70797612 Msa1266070:intron 30.0%
! TGTTGCCTTTTATGTTTTTC+TGG - chr8_2:70797769-70797788 Msa1266070:intron 30.0%
! GTTGCCTTTTATGTTTTTCT+GGG - chr8_2:70797770-70797789 Msa1266070:intron 30.0%
! TTGCCTTTTATGTTTTTCTG+GGG - chr8_2:70797771-70797790 Msa1266070:intron 30.0%
TTACCCCAGAAAAACATAAA+AGG + chr8_2:70797777-70797796 None:intergenic 30.0%
ATATTTATGGTCAACAGAGA+AGG + chr8_2:70797816-70797835 None:intergenic 30.0%
AAATGCTTGAGCTAAATAGA+TGG + chr8_2:70798138-70798157 None:intergenic 30.0%
TCTGCCTTAGCTTATTTATT+TGG - chr8_2:70798174-70798193 Msa1266070:intron 30.0%
TGGACCAAATAAATAAGCTA+AGG + chr8_2:70798181-70798200 None:intergenic 30.0%
!!! TAGGAATATTTTTTGGGCTT+TGG + chr8_2:70798341-70798360 None:intergenic 30.0%
! ATCTTGTTATACATTGAGCT+AGG + chr8_2:70798360-70798379 None:intergenic 30.0%
!! TTGTTGATTTGGCAGTAAAA+CGG - chr8_2:70798395-70798414 Msa1266070:intron 30.0%
AAAGGTCAAATATATGCTCT+CGG - chr8_2:70798455-70798474 Msa1266070:intron 30.0%
CAATTTACACTGAAGTATGT+GGG + chr8_2:70798495-70798514 None:intergenic 30.0%
TCAATTTACACTGAAGTATG+TGG + chr8_2:70798496-70798515 None:intergenic 30.0%
TAAAATGCAAACCAGGATTA+AGG - chr8_2:70798553-70798572 Msa1266070:CDS 30.0%
GTCAGATTAGAATTCTTTAG+GGG + chr8_2:70798677-70798696 None:intergenic 30.0%
ATCCCAAATATTGTGATTAG+AGG + chr8_2:70798745-70798764 None:intergenic 30.0%
!! CATACAAACTCGTTCTAAAA+AGG + chr8_2:70798783-70798802 None:intergenic 30.0%
GATTGAGATTGAGATTGAGA+AGG + chr8_2:70792563-70792582 None:intergenic 35.0%
TCGGCATTAACAAAACCAAA+TGG + chr8_2:70792770-70792789 None:intergenic 35.0%
! GTTTAGAATTAGGCCCTATT+TGG + chr8_2:70793275-70793294 None:intergenic 35.0%
ATAGGGCCTAATTCTAAACT+AGG - chr8_2:70793276-70793295 Msa1266070:intron 35.0%
TTTATCATCATGCTCTCCAA+TGG - chr8_2:70793579-70793598 Msa1266070:intron 35.0%
CTGTCATGATTTATGCCAAA+TGG + chr8_2:70793696-70793715 None:intergenic 35.0%
!! GTAGTTTTACTTGACAGTTG+TGG - chr8_2:70793715-70793734 Msa1266070:intron 35.0%
! TTTATATTGAGACCGACTCT+TGG - chr8_2:70794020-70794039 Msa1266070:intron 35.0%
TTTCAAAGCATGGCTAAATC+TGG - chr8_2:70794053-70794072 Msa1266070:intron 35.0%
GAACTCAACAGTAAGATGAT+AGG + chr8_2:70794454-70794473 None:intergenic 35.0%
CGTAGTTAATGTGTGCAATA+AGG - chr8_2:70794524-70794543 Msa1266070:intron 35.0%
CTTAGAAAACCAGCGAAATT+TGG + chr8_2:70794594-70794613 None:intergenic 35.0%
!!! CAAATTTCGCTGGTTTTCTA+AGG - chr8_2:70794592-70794611 Msa1266070:intron 35.0%
GGATTTACAACATCAAAGAC+GGG + chr8_2:70794806-70794825 None:intergenic 35.0%
CTAAACACTTACTTGTGTTG+AGG + chr8_2:70794827-70794846 None:intergenic 35.0%
AAAAAACTCGGAAGTCAAGA+AGG + chr8_2:70794902-70794921 None:intergenic 35.0%
TGAGTATACTCTTCTACATC+TGG - chr8_2:70794951-70794970 Msa1266070:intron 35.0%
GAGTATACTCTTCTACATCT+GGG - chr8_2:70794952-70794971 Msa1266070:intron 35.0%
TCTGAAAGACAACAGTAAGT+GGG + chr8_2:70795250-70795269 None:intergenic 35.0%
CAGCAATAGCATTATTCTCA+GGG + chr8_2:70795299-70795318 None:intergenic 35.0%
ACAGCAATAGCATTATTCTC+AGG + chr8_2:70795300-70795319 None:intergenic 35.0%
TGCTATTGCTGTAAATACTC+AGG - chr8_2:70795308-70795327 Msa1266070:intron 35.0%
!!! TTTTTTACTTAACTGCAGGC+AGG - chr8_2:70795399-70795418 Msa1266070:intron 35.0%
ACAATATGCACAAGAATCAC+CGG + chr8_2:70795442-70795461 None:intergenic 35.0%
GTGATTCTTGTGCATATTGT+TGG - chr8_2:70795442-70795461 Msa1266070:intron 35.0%
GCTAAAAATCAAGACCTGAT+TGG + chr8_2:70795658-70795677 None:intergenic 35.0%
ACCTTATAAAAGGTCATGGA+AGG - chr8_2:70796250-70796269 Msa1266070:intron 35.0%
CCTTATAAAAGGTCATGGAA+GGG - chr8_2:70796251-70796270 Msa1266070:intron 35.0%
CTTATAAAAGGTCATGGAAG+GGG - chr8_2:70796252-70796271 Msa1266070:intron 35.0%
AATTCCATCCCACATATATC+TGG + chr8_2:70796412-70796431 None:intergenic 35.0%
AGTTAAAAGGACCTGTTTCA+TGG - chr8_2:70796766-70796785 Msa1266070:intron 35.0%
GTTAAAAGGACCTGTTTCAT+GGG - chr8_2:70796767-70796786 Msa1266070:intron 35.0%
AAAATACTAGGGACGAGATA+AGG + chr8_2:70796859-70796878 None:intergenic 35.0%
! TATCTCGTCCCTAGTATTTT+TGG - chr8_2:70796859-70796878 Msa1266070:intron 35.0%
ACATATGCCACTCTAGTAAA+AGG - chr8_2:70796885-70796904 Msa1266070:intron 35.0%
! TCATGTTCCTTTTACTAGAG+TGG + chr8_2:70796895-70796914 None:intergenic 35.0%
ATGCATGTATGCATTGCTAT+TGG - chr8_2:70797035-70797054 Msa1266070:intron 35.0%
GAAGATTATACTGACCAGAA+AGG + chr8_2:70797184-70797203 None:intergenic 35.0%
AGTGAAAAGCTTACATGCTT+AGG - chr8_2:70797239-70797258 Msa1266070:intron 35.0%
GTGGACGTAATATATCACTT+TGG - chr8_2:70797345-70797364 Msa1266070:intron 35.0%
GCATGCAGCAAATTAGAATT+GGG + chr8_2:70797511-70797530 None:intergenic 35.0%
AGCATGCAGCAAATTAGAAT+TGG + chr8_2:70797512-70797531 None:intergenic 35.0%
!! TGATAACGGTGTCAGTTTAT+TGG - chr8_2:70797618-70797637 Msa1266070:intron 35.0%
! GATAACGGTGTCAGTTTATT+GGG - chr8_2:70797619-70797638 Msa1266070:intron 35.0%
AAAGATTATGTTACCCCTCT+TGG - chr8_2:70797689-70797708 Msa1266070:intron 35.0%
TACAGAATCATCATCCAAGA+GGG + chr8_2:70797706-70797725 None:intergenic 35.0%
AAAATATGAAGACGGAGCAA+GGG + chr8_2:70797745-70797764 None:intergenic 35.0%
AAAAATATGAAGACGGAGCA+AGG + chr8_2:70797746-70797765 None:intergenic 35.0%
ATGTCAAAGCGATTGAGTAT+AGG + chr8_2:70797976-70797995 None:intergenic 35.0%
TGGATGTAAGGAGATAGAAA+AGG + chr8_2:70798043-70798062 None:intergenic 35.0%
AACAAAAAACATACCCCTGA+TGG + chr8_2:70798063-70798082 None:intergenic 35.0%
! TGGGGTTAGAATCTTTGTTT+AGG - chr8_2:70798105-70798124 Msa1266070:intron 35.0%
!! TTTAGCTCAAGCATTTTGCA+TGG - chr8_2:70798142-70798161 Msa1266070:intron 35.0%
GTGAACTTAGCTAAACACAT+TGG + chr8_2:70798296-70798315 None:intergenic 35.0%
!! GAGTTGGCGTAATTTTTCAA+AGG - chr8_2:70798437-70798456 Msa1266070:intron 35.0%
TTGTGATTAGAGGAATAGGA+AGG + chr8_2:70798735-70798754 None:intergenic 35.0%
TGTACGGTATGTAAACACAC+AGG - chr8_2:70792398-70792417 Msa1266070:three_prime_UTR 40.0%
! AAACCGTTTTCAGAACTGCT+TGG - chr8_2:70792534-70792553 Msa1266070:three_prime_UTR 40.0%
! AACCGTTTTCAGAACTGCTT+GGG - chr8_2:70792535-70792554 Msa1266070:three_prime_UTR 40.0%
!!! TGGTTTTGTTAATGCCGATG+CGG - chr8_2:70792772-70792791 Msa1266070:three_prime_UTR 40.0%
GTAAACTTACTCATCCGCAT+CGG + chr8_2:70792789-70792808 None:intergenic 40.0%
TGCGCTTGAAATAAGCAATC+TGG + chr8_2:70792924-70792943 None:intergenic 40.0%
TGCTTATTTCAAGCGCATCA+TGG - chr8_2:70792927-70792946 Msa1266070:CDS 40.0%
GCTTATTTCAAGCGCATCAT+GGG - chr8_2:70792928-70792947 Msa1266070:CDS 40.0%
!! CAAGTGTTGATCATGATGTG+AGG + chr8_2:70793225-70793244 None:intergenic 40.0%
TAGCAACTGACCATCAATAG+TGG + chr8_2:70793503-70793522 None:intergenic 40.0%
! AGGGTGTTCAGTTTACCATT+TGG - chr8_2:70793678-70793697 Msa1266070:intron 40.0%
! TTGACAGTTGTGGTGATGAT+GGG - chr8_2:70793725-70793744 Msa1266070:intron 40.0%
GAGCTAAGATTCATAGGTGT+AGG + chr8_2:70793952-70793971 None:intergenic 40.0%
CACCTATGAATCTTAGCTCA+TGG - chr8_2:70793953-70793972 Msa1266070:intron 40.0%
CTCCATGAGCTAAGATTCAT+AGG + chr8_2:70793958-70793977 None:intergenic 40.0%
AAGCTTCAACCAAATTTCGC+TGG - chr8_2:70794582-70794601 Msa1266070:intron 40.0%
! CTCTGAAAGACAACAGTAAG+TGG + chr8_2:70795251-70795270 None:intergenic 40.0%
CACTTACTGTTGTCTTTCAG+AGG - chr8_2:70795249-70795268 Msa1266070:intron 40.0%
ATAGCATTATTCTCAGGGAG+AGG + chr8_2:70795294-70795313 None:intergenic 40.0%
TTGTGCATATTGTTGGGATG+CGG - chr8_2:70795449-70795468 Msa1266070:intron 40.0%
GATGCGGTATGTATTTAGTG+AGG - chr8_2:70795465-70795484 Msa1266070:intron 40.0%
GTTAAACCAGAGGTGAAGAA+AGG - chr8_2:70795729-70795748 Msa1266070:intron 40.0%
AAGCGAATGGAGAGATAACA+CGG - chr8_2:70796084-70796103 Msa1266070:intron 40.0%
! CCCTTCCATGACCTTTTATA+AGG + chr8_2:70796254-70796273 None:intergenic 40.0%
! TTCTGGTGCCAGATATATGT+GGG - chr8_2:70796401-70796420 Msa1266070:CDS 40.0%
TGTGGGATGGAATTCTCTTA+TGG - chr8_2:70796418-70796437 Msa1266070:intron 40.0%
AACGATGTGCAGATCATAAC+AGG - chr8_2:70796498-70796517 Msa1266070:intron 40.0%
ATCATAACAGGTTCAGAGGA+TGG - chr8_2:70796510-70796529 Msa1266070:intron 40.0%
TCATAACAGGTTCAGAGGAT+GGG - chr8_2:70796511-70796530 Msa1266070:intron 40.0%
! GTTTTGCTGGATCAATCACT+TGG + chr8_2:70796740-70796759 None:intergenic 40.0%
TGGTCAGTATAATCTTCGTG+TGG - chr8_2:70797187-70797206 Msa1266070:intron 40.0%
! TTTGCTGCATGCTCTTTTTG+TGG - chr8_2:70797519-70797538 Msa1266070:intron 40.0%
! TTGCTGCATGCTCTTTTTGT+GGG - chr8_2:70797520-70797539 Msa1266070:intron 40.0%
!! GTGATGGACTGGTATGATAA+CGG - chr8_2:70797604-70797623 Msa1266070:intron 40.0%
AAAGAAAGGATAGGTGCTCT+AGG - chr8_2:70797665-70797684 Msa1266070:intron 40.0%
ACAGAATCATCATCCAAGAG+GGG + chr8_2:70797705-70797724 None:intergenic 40.0%
CTACAGAATCATCATCCAAG+AGG + chr8_2:70797707-70797726 None:intergenic 40.0%
GCATTTCAGATTCTGACAGT+TGG - chr8_2:70797943-70797962 Msa1266070:intron 40.0%
CTCAATCGCTTTGACATGAA+CGG - chr8_2:70797979-70797998 Msa1266070:intron 40.0%
AAGGAGATAGAAAAGGCTGA+TGG + chr8_2:70798036-70798055 None:intergenic 40.0%
TCTATCTCCTTACATCCATC+AGG - chr8_2:70798045-70798064 Msa1266070:intron 40.0%
CTATCTCCTTACATCCATCA+GGG - chr8_2:70798046-70798065 Msa1266070:intron 40.0%
TATCTCCTTACATCCATCAG+GGG - chr8_2:70798047-70798066 Msa1266070:intron 40.0%
GCTTGAGCTAAATAGATGGT+TGG + chr8_2:70798134-70798153 None:intergenic 40.0%
ATAACCTGAAACGAGCAGAA+TGG + chr8_2:70798201-70798220 None:intergenic 40.0%
GTGGATGTAATCTCGCAATT+TGG - chr8_2:70798246-70798265 Msa1266070:CDS 40.0%
CTCTTTGTGTAAACAGGTTC+AGG + chr8_2:70798579-70798598 None:intergenic 40.0%
ACCTGTTTACACAAAGAGAG+AGG - chr8_2:70798581-70798600 Msa1266070:CDS 40.0%
TCCTCTCTCTTTGTGTAAAC+AGG + chr8_2:70798585-70798604 None:intergenic 40.0%
TGTTGCTACAAGATAGCCTT+TGG + chr8_2:70798610-70798629 None:intergenic 40.0%
TGCTCACTACTTGTGCTTAT+TGG - chr8_2:70798803-70798822 Msa1266070:five_prime_UTR 40.0%
CGGTATGTAAACACACAGGT+AGG - chr8_2:70792402-70792421 Msa1266070:three_prime_UTR 45.0%
AAAGATAGCGAGCGAGTGAT+GGG - chr8_2:70792431-70792450 Msa1266070:three_prime_UTR 45.0%
!! CGAGTGATGGGTACAATGTT+TGG - chr8_2:70792443-70792462 Msa1266070:three_prime_UTR 45.0%
!! AGCCCAAGCAGTTCTGAAAA+CGG + chr8_2:70792540-70792559 None:intergenic 45.0%
GAAGCAACGAAGAGAGATTG+AGG + chr8_2:70792590-70792609 None:intergenic 45.0%
TTTGAGCTTAGAAGCGGAGA+TGG + chr8_2:70792651-70792670 None:intergenic 45.0%
ACGAAAATGCTCTCTTGCTC+AGG - chr8_2:70792982-70793001 Msa1266070:CDS 45.0%
! CTTGACAGTTGTGGTGATGA+TGG - chr8_2:70793724-70793743 Msa1266070:intron 45.0%
GCACAATTCTCATTGACCCT+TGG + chr8_2:70794121-70794140 None:intergenic 45.0%
ACAATCAAGCAGTGAGCGTA+TGG + chr8_2:70794644-70794663 None:intergenic 45.0%
GAAGAATCCCTTTCTCTGAC+AGG + chr8_2:70795129-70795148 None:intergenic 45.0%
AAGGGATTCTTCACACGATC+TGG - chr8_2:70795137-70795156 Msa1266070:intron 45.0%
AGGGATTCTTCACACGATCT+GGG - chr8_2:70795138-70795157 Msa1266070:intron 45.0%
TGTTGTCTTTCAGAGGTCCT+TGG - chr8_2:70795256-70795275 Msa1266070:intron 45.0%
GTTGTCTTTCAGAGGTCCTT+GGG - chr8_2:70795257-70795276 Msa1266070:intron 45.0%
TTGTCTTTCAGAGGTCCTTG+GGG - chr8_2:70795258-70795277 Msa1266070:intron 45.0%
CAAGTTCCTTTCTTCACCTC+TGG + chr8_2:70795738-70795757 None:intergenic 45.0%
ATCTGGCACCAGAAGAATAG+TGG + chr8_2:70796395-70796414 None:intergenic 45.0%
! CTTCTGGTGCCAGATATATG+TGG - chr8_2:70796400-70796419 Msa1266070:CDS 45.0%
GCAGATCATAACAGGTTCAG+AGG - chr8_2:70796506-70796525 Msa1266070:intron 45.0%
AGGATGGGACAACACGAATT+TGG - chr8_2:70796526-70796545 Msa1266070:intron 45.0%
GGATGGGACAACACGAATTT+GGG - chr8_2:70796527-70796546 Msa1266070:intron 45.0%
GATGGGACAACACGAATTTG+GGG - chr8_2:70796528-70796547 Msa1266070:intron 45.0%
AAAGGACCTGTTTCATGGGT+TGG - chr8_2:70796771-70796790 Msa1266070:intron 45.0%
CTTTAGATGCAAGTGAGAGC+TGG - chr8_2:70796802-70796821 Msa1266070:intron 45.0%
GTCACTACTGGGTGAATCTA+CGG - chr8_2:70796931-70796950 Msa1266070:intron 45.0%
CACCATTGCCAATGTTCTAC+AGG - chr8_2:70797313-70797332 Msa1266070:intron 45.0%
AGCCTGTAGAACATTGGCAA+TGG + chr8_2:70797318-70797337 None:intergenic 45.0%
ACTGCAAGCCTGTAGAACAT+TGG + chr8_2:70797324-70797343 None:intergenic 45.0%
TTTAATGTGCACTCTGCAGC+AGG + chr8_2:70797377-70797396 None:intergenic 45.0%
! TGCTGCATGCTCTTTTTGTG+GGG - chr8_2:70797521-70797540 Msa1266070:intron 45.0%
GAGCACACGGTATTTGTGAA+AGG + chr8_2:70798011-70798030 None:intergenic 45.0%
GAGATAGAAAAGGCTGATGG+AGG + chr8_2:70798033-70798052 None:intergenic 45.0%
! ACATACCCCTGATGGATGTA+AGG + chr8_2:70798055-70798074 None:intergenic 45.0%
!! TCGTTTCAGGTTATTGCCGT+TGG - chr8_2:70798207-70798226 Msa1266070:intron 45.0%
!! TTTCAGGTTATTGCCGTTGG+TGG - chr8_2:70798210-70798229 Msa1266070:intron 45.0%
AAACGGTGTATCCAATACCG+TGG - chr8_2:70798412-70798431 Msa1266070:intron 45.0%
CACTGAAGTATGTGGGTTTG+AGG + chr8_2:70798488-70798507 None:intergenic 45.0%
ACAAAGAGAGAGGAAGCCAA+AGG - chr8_2:70798591-70798610 Msa1266070:CDS 45.0%
TAGCCTGCCATGAAAAGCAA+AGG - chr8_2:70798641-70798660 Msa1266070:CDS 45.0%
AGCCTGCCATGAAAAGCAAA+GGG - chr8_2:70798642-70798661 Msa1266070:CDS 45.0%
!!! TAACAAAATAATTTAAAATA+GGG - chr8_2:70795006-70795025 Msa1266070:intron 5.0%
!!! GTTTATTTTAAAAATAATAA+TGG - chr8_2:70796135-70796154 Msa1266070:intron 5.0%
!! TAAAAATATTGAAATATTTA+TGG + chr8_2:70797829-70797848 None:intergenic 5.0%
GAAAGATAGCGAGCGAGTGA+TGG - chr8_2:70792430-70792449 Msa1266070:three_prime_UTR 50.0%
!! TGTTTGGTGACGCCACAAAC+TGG - chr8_2:70792459-70792478 Msa1266070:three_prime_UTR 50.0%
CGCATCTTCGTTCCAGTTTG+TGG + chr8_2:70792474-70792493 None:intergenic 50.0%
CTCTTCGTTGCTTCCAGTGA+TGG - chr8_2:70792596-70792615 Msa1266070:three_prime_UTR 50.0%
AGAAGCGATGGAACCATCAC+TGG + chr8_2:70792612-70792631 None:intergenic 50.0%
!! TAGAAGCGGAGATGGTGGAA+GGG + chr8_2:70792643-70792662 None:intergenic 50.0%
!! TTAGAAGCGGAGATGGTGGA+AGG + chr8_2:70792644-70792663 None:intergenic 50.0%
!! ACAGTTGTGGTGATGATGGG+CGG - chr8_2:70793728-70793747 Msa1266070:intron 50.0%
GATTCGAGGATGGAGATGGA+AGG - chr8_2:70793750-70793769 Msa1266070:intron 50.0%
AGCAGTGAGCGTATGGTAGA+GGG + chr8_2:70794637-70794656 None:intergenic 50.0%
AAGCAGTGAGCGTATGGTAG+AGG + chr8_2:70794638-70794657 None:intergenic 50.0%
TCTCTGACAGGTCTCGAGTT+AGG + chr8_2:70795117-70795136 None:intergenic 50.0%
ACTCGAGACCTGTCAGAGAA+AGG - chr8_2:70795118-70795137 Msa1266070:intron 50.0%
CTCGAGACCTGTCAGAGAAA+GGG - chr8_2:70795119-70795138 Msa1266070:intron 50.0%
AGAGGTGAAAGTGAACCCCA+AGG + chr8_2:70795276-70795295 None:intergenic 50.0%
TGTTAGGCCAGCATCAACAG+AGG + chr8_2:70795546-70795565 None:intergenic 50.0%
TGCTCGCAACTCATCCAATC+AGG - chr8_2:70795641-70795660 Msa1266070:intron 50.0%
GGTGCCAGATATATGTGGGA+TGG - chr8_2:70796405-70796424 Msa1266070:CDS 50.0%
TCAGGCAACACGTTGTGTGT+GGG + chr8_2:70796456-70796475 None:intergenic 50.0%
ACAGAGCCAACCCATGAAAC+AGG + chr8_2:70796780-70796799 None:intergenic 50.0%
AGATGCAAGTGAGAGCTGGT+TGG - chr8_2:70796806-70796825 Msa1266070:intron 50.0%
GTTCTACAGGCTTGCAGTAG+TGG - chr8_2:70797326-70797345 Msa1266070:intron 50.0%
TTCCACTCGAGCTTCTGTAC+AGG - chr8_2:70797400-70797419 Msa1266070:intron 50.0%
ATCCTGTACAGAAGCTCGAG+TGG + chr8_2:70797405-70797424 None:intergenic 50.0%
! GCTGCATGCTCTTTTTGTGG+GGG - chr8_2:70797522-70797541 Msa1266070:intron 50.0%
! CATGCTCTTTTTGTGGGGGA+GGG - chr8_2:70797526-70797545 Msa1266070:intron 50.0%
TGGTCCATTCTGCTCGTTTC+AGG - chr8_2:70798194-70798213 Msa1266070:intron 50.0%
!! GTTATTGCCGTTGGTGGCTA+CGG - chr8_2:70798216-70798235 Msa1266070:intron 50.0%
AAGACATCCGTAGCCACCAA+CGG + chr8_2:70798226-70798245 None:intergenic 50.0%
! GGCATCGAAATGTGCACATG+TGG + chr8_2:70798275-70798294 None:intergenic 50.0%
AAATTACGCCAACTCCGCCA+CGG + chr8_2:70798432-70798451 None:intergenic 50.0%
ACAGGTTCAGGCCTTAATCC+TGG + chr8_2:70798567-70798586 None:intergenic 50.0%
!! AGCCCTTTGCTTTTCATGGC+AGG + chr8_2:70798647-70798666 None:intergenic 50.0%
!! GTGCAGCCCTTTGCTTTTCA+TGG + chr8_2:70798651-70798670 None:intergenic 50.0%
AGGGAGGGAGTAAGAAGCGA+TGG + chr8_2:70792624-70792643 None:intergenic 55.0%
GAGCTTAGAAGCGGAGATGG+TGG + chr8_2:70792648-70792667 None:intergenic 55.0%
!! ATGATGGGCGGATTCGAGGA+TGG - chr8_2:70793740-70793759 Msa1266070:intron 55.0%
CTACATCTGGGTTCCTCACC+TGG - chr8_2:70794964-70794983 Msa1266070:intron 55.0%
! GGATCTGTTTTCGCTGCGTC+CGG - chr8_2:70795420-70795439 Msa1266070:intron 55.0%
AGTCGCACCTCTGTTGATGC+TGG - chr8_2:70795536-70795555 Msa1266070:intron 55.0%
CTCAGGCAACACGTTGTGTG+TGG + chr8_2:70796457-70796476 None:intergenic 55.0%
ATGTGCACTCTGCAGCAGGA+AGG + chr8_2:70797373-70797392 None:intergenic 55.0%
! GCATGCTCTTTTTGTGGGGG+AGG - chr8_2:70797525-70797544 Msa1266070:intron 55.0%
! CTCTTTTTGTGGGGGAGGGA+GGG - chr8_2:70797530-70797549 Msa1266070:intron 55.0%
! TCTTTTTGTGGGGGAGGGAG+GGG - chr8_2:70797531-70797550 Msa1266070:intron 55.0%
! AAGGCTGATGGAGGAGCACA+CGG + chr8_2:70798024-70798043 None:intergenic 55.0%
TGGTGGCTACGGATGTCTTG+TGG - chr8_2:70798227-70798246 Msa1266070:CDS 55.0%
CGGTGTATCCAATACCGTGG+CGG - chr8_2:70798415-70798434 Msa1266070:intron 55.0%
! ATCCAATACCGTGGCGGAGT+TGG - chr8_2:70798421-70798440 Msa1266070:intron 55.0%
!! AGCGGAGATGGTGGAAGGGA+GGG + chr8_2:70792639-70792658 None:intergenic 60.0%
!! AAGCGGAGATGGTGGAAGGG+AGG + chr8_2:70792640-70792659 None:intergenic 60.0%
!! GGTGATGATGGGCGGATTCG+AGG - chr8_2:70793736-70793755 Msa1266070:intron 60.0%
! GGCGGATTCGAGGATGGAGA+TGG - chr8_2:70793746-70793765 Msa1266070:intron 60.0%
! GCTCTTTTTGTGGGGGAGGG+AGG - chr8_2:70797529-70797548 Msa1266070:intron 60.0%
CGCCAACTCCGCCACGGTAT+TGG + chr8_2:70798426-70798445 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 70792381 70798841 70792381 ID=Msa1266070;Name=Msa1266070
chr8_2 mRNA 70792381 70798841 70792381 ID=Msa1266070-mRNA-1;Parent=Msa1266070;Name=Msa1266070-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68|1|1|1|1|1|13|536|380
chr8_2 exon 70792381 70793006 70792381 ID=Msa1266070-mRNA-1:exon:23593;Parent=Msa1266070-mRNA-1
chr8_2 exon 70793154 70793270 70793154 ID=Msa1266070-mRNA-1:exon:23592;Parent=Msa1266070-mRNA-1
chr8_2 exon 70793777 70793887 70793777 ID=Msa1266070-mRNA-1:exon:23591;Parent=Msa1266070-mRNA-1
chr8_2 exon 70794395 70794507 70794395 ID=Msa1266070-mRNA-1:exon:23590;Parent=Msa1266070-mRNA-1
chr8_2 exon 70794673 70794712 70794673 ID=Msa1266070-mRNA-1:exon:23589;Parent=Msa1266070-mRNA-1
chr8_2 exon 70795560 70795640 70795560 ID=Msa1266070-mRNA-1:exon:23588;Parent=Msa1266070-mRNA-1
chr8_2 exon 70795752 70795805 70795752 ID=Msa1266070-mRNA-1:exon:23587;Parent=Msa1266070-mRNA-1
chr8_2 exon 70795893 70795953 70795893 ID=Msa1266070-mRNA-1:exon:23586;Parent=Msa1266070-mRNA-1
chr8_2 exon 70796388 70796433 70796388 ID=Msa1266070-mRNA-1:exon:23585;Parent=Msa1266070-mRNA-1
chr8_2 exon 70797414 70797490 70797414 ID=Msa1266070-mRNA-1:exon:23584;Parent=Msa1266070-mRNA-1
chr8_2 exon 70798219 70798314 70798219 ID=Msa1266070-mRNA-1:exon:23583;Parent=Msa1266070-mRNA-1
chr8_2 exon 70798424 70798455 70798424 ID=Msa1266070-mRNA-1:exon:23582;Parent=Msa1266070-mRNA-1
chr8_2 exon 70798549 70798841 70798549 ID=Msa1266070-mRNA-1:exon:23581;Parent=Msa1266070-mRNA-1
chr8_2 five_prime_UTR 70798774 70798841 70798774 ID=Msa1266070-mRNA-1:five_prime_utr;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70798549 70798773 70798549 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70798424 70798455 70798424 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70798219 70798314 70798219 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70797414 70797490 70797414 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70796388 70796433 70796388 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70795893 70795953 70795893 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70795752 70795805 70795752 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70795560 70795640 70795560 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70794673 70794712 70794673 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70794395 70794507 70794395 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70793777 70793887 70793777 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70793154 70793270 70793154 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 CDS 70792917 70793006 70792917 ID=Msa1266070-mRNA-1:cds;Parent=Msa1266070-mRNA-1
chr8_2 three_prime_UTR 70792381 70792916 70792381 ID=Msa1266070-mRNA-1:three_prime_utr;Parent=Msa1266070-mRNA-1
Gene Sequence

>Msa1266070

ATGGGTACAATGTTTGGTGACGCCACAAACTGGAACGAAGATGCGTACAAAGAATCCGTATTAAAAGAAAGAGAGATTCAAACTCAAACCGTTTTCAGAACTGCTTGGGCTCCTTCTCAATCTCAATCTCAATCTCAACCTCAATCTCTCTTCGTTGCTTCCAGTGATGGTTCCATCGCTTCTTACTCCCTCCCTTCCACCATCTCCGCTTCTAAGCTCAAAAATCCATTTGGTTTTGTTAATGCCGATGCGGATGATTTATTAGCTGAGCCAGATTGCTTATTTCAAGCGCATCATGGGTCTGCTTATGATGTCAAATTCTACGGTCATGACGAAAATGCTCTCTTGCTCAGTTGTGGTGATGATGGGCGGATTCGAGGATGGAGATGGAAGGAACTTACAAACTTCAAGTATAATATTTCTTCAGAAGGAATTGATATCAAGCCCGTCTTTGATGTTGTAAATCCTCAACACAAAGGTCCTTGGGGTTCACTTTCACCTCTCCCTGAGAATAATGCTATTGCTGTAAATACTCAGGCAGGATCTGTTTTCGCTGCGTCCGGTGATTCTTGTGCATATTGTTGGGATGCGGAAACTGGTAAATTAAAAACGGTATTCAAGGGACACTCTGATTACTTGCATTGTATTGTTGCTCGCAACTCATCCAATCAGATCATAACAGGTTCAGAGGATGGGACAACACGAATTTGGGATTGCAAGAGTGGAAAGTGTATCCAAGTGATTGATCCAGCAAAACATTTGAAGTTAAAAGGACCTGTTTCATGGGTTGGCTCTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTGCAGAGTGCACATTAAATTTTTCCACTCGAGCTTCTGTACAGGATCTGTTATTCGACAATAATCAAATTCTGACAGTTGGTGCAGATCCTATACTCAATCGCTTTGACATGAACGGTGCGATCCTTTCACAAATACCGTGTGCTCCTCCATCAGCCTTTTCTATCTCCTTACATCCATCAGGGGTTATTGCCGTTGGTGGCTACGGATGTCTTGTGGATGTAATCTCGCAATTTGGCAGCCACATGTGCACATTTCGATGCCAATGTGTTTAG

Protein sequence

>Msa1266070

MGTMFGDATNWNEDAYKESVLKEREIQTQTVFRTAWAPSQSQSQSQPQSLFVASSDGSIASYSLPSTISASKLKNPFGFVNADADDLLAEPDCLFQAHHGSAYDVKFYGHDENALLLSCGDDGRIRGWRWKELTNFKYNISSEGIDIKPVFDVVNPQHKGPWGSLSPLPENNAIAVNTQAGSVFAASGDSCAYCWDAETGKLKTVFKGHSDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCIQVIDPAKHLKLKGPVSWVGSVALDASESWLACSSGRNISLWNLPAAECTLNFSTRASVQDLLFDNNQILTVGADPILNRFDMNGAILSQIPCAPPSAFSISLHPSGVIAVGGYGCLVDVISQFGSHMCTFRCQCV*