AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526070 MtrunA17_Chr7g0272081 95.200 125 6 0 1 125 1 125 5.87e-84 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526070 AT1G56260.2 49.138 116 58 1 1 115 1 116 7.93e-38 124
Msa0526070 AT1G56260.1 49.138 116 58 1 1 115 1 116 7.93e-38 124

Find 51 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCATGTTTATATGCTTCT+AGG 0.224256 3_4:+79765855 Msa0526070:three_prime_UTR
GGAACATCAGTCAGAATAAT+TGG 0.230539 3_4:+79762923 Msa0526070:CDS
AAGCCCTCTGTCCATTCTTC+AGG 0.290788 3_4:+79761903 Msa0526070:five_prime_UTR
AGCCAACCATTTGAATAATT+CGG 0.300995 3_4:+79765724 Msa0526070:CDS
ATTCATTACATTGCACAATC+AGG 0.318021 3_4:-79766104 None:intergenic
ATTCGGCAACTTAACTTTGT+AGG 0.318906 3_4:+79765741 Msa0526070:exon
TTTACAAGTTACAACCTTCA+TGG 0.334882 3_4:+79765927 Msa0526070:three_prime_UTR
GAGGCTCTGCGACAAACTTA+AGG 0.393479 3_4:+79766077 Msa0526070:three_prime_UTR
ATACTTCTATGAAAATAGTA+AGG 0.422076 3_4:-79765805 None:intergenic
GGATCTGTCTACCAATTCAT+TGG 0.425515 3_4:+79765405 Msa0526070:CDS
GACATTTAGTTGTAAATTTG+AGG 0.431238 3_4:+79766058 Msa0526070:three_prime_UTR
TAAGAAGCTCGCCAATGAAT+TGG 0.437510 3_4:-79765416 None:intergenic
CAGATCCAACTTGAAACTTA+AGG 0.441876 3_4:-79765389 None:intergenic
TTGCTTCGAATGATGCCATC+AGG 0.454505 3_4:-79762841 None:intergenic
ATATGCTGTGCATGCTTCAC+GGG 0.455517 3_4:+79766035 Msa0526070:three_prime_UTR
TGCCGAATTATTCAAATGGT+TGG 0.458705 3_4:-79765726 None:intergenic
TCCGTGAATCAAAGTTAAAA+CGG 0.459387 3_4:+79761801 None:intergenic
AAAGAAGAAAACCTGAAGAA+TGG 0.480856 3_4:-79761914 None:intergenic
CACGAATACTCTTTAGAGAC+AGG 0.496480 3_4:+79765306 Msa0526070:CDS
AAGGACCTTAAGTTTCAAGT+TGG 0.504185 3_4:+79765384 Msa0526070:CDS
AATATGCTGTGCATGCTTCA+CGG 0.506595 3_4:+79766034 Msa0526070:three_prime_UTR
GCATCATTCGAAGCAAAATC+CGG 0.514495 3_4:+79762848 Msa0526070:CDS
TTCATTACATTGCACAATCA+GGG 0.516627 3_4:-79766103 None:intergenic
CACGTACCTCATCATCAGTT+CGG 0.519854 3_4:-79765440 None:intergenic
ACCGCGAGGGTAGACGGCGG+TGG 0.528791 3_4:-79761855 None:intergenic
AAGTTGCCGAATTATTCAAA+TGG 0.529169 3_4:-79765730 None:intergenic
GCGAGGGTAGACGGCGGTGG+AGG 0.546576 3_4:-79761852 None:intergenic
AAAATGAAATGTCACCATGA+AGG 0.555013 3_4:-79765941 None:intergenic
ACGACCACCGCGAGGGTAGA+CGG 0.565243 3_4:-79761861 None:intergenic
TTTATATGCTTCTAGGACAA+GGG 0.567964 3_4:+79765862 Msa0526070:three_prime_UTR
TAGTAGCAAGTGAAGCCTGA+TGG 0.580797 3_4:+79762826 Msa0526070:exon
GTTTATATGCTTCTAGGACA+AGG 0.581797 3_4:+79765861 Msa0526070:three_prime_UTR
TTGTAAAGAAACTAACGCAC+CGG 0.593486 3_4:-79762867 None:intergenic
AGTTAGTACTGAGCATCTGA+AGG 0.602957 3_4:+79765365 Msa0526070:CDS
TACCATCGATGACTGTTGCA+AGG 0.616671 3_4:-79765329 None:intergenic
GGCCTTGCAACAGTCATCGA+TGG 0.618120 3_4:+79765327 Msa0526070:CDS
TACTTCTATGAAAATAGTAA+GGG 0.622395 3_4:-79765804 None:intergenic
AAACCTGAAGAATGGACAGA+GGG 0.630357 3_4:-79761906 None:intergenic
AAACTGTTTCAAAAGCAGCA+AGG 0.639053 3_4:-79765699 None:intergenic
TCTTATCCGAACTGATGATG+AGG 0.648922 3_4:+79765434 Msa0526070:CDS
AATGTACACGACCACCGCGA+GGG 0.651221 3_4:-79761868 None:intergenic
CATGATGACATCAAAGAGTG+TGG 0.652971 3_4:+79765995 Msa0526070:three_prime_UTR
AAAACCTGAAGAATGGACAG+AGG 0.659411 3_4:-79761907 None:intergenic
CGTGTTGGTAGAAATGTCGA+CGG 0.665620 3_4:+79765650 Msa0526070:CDS
CGGCGGTGGAGGCAGAACAG+AGG 0.670181 3_4:-79761841 None:intergenic
GTGTTGGTAGAAATGTCGAC+GGG 0.670397 3_4:+79765651 Msa0526070:CDS
TCCACCGCCGTCTACCCTCG+CGG 0.675678 3_4:+79761854 Msa0526070:five_prime_UTR
TATGCTGTGCATGCTTCACG+GGG 0.690045 3_4:+79766036 Msa0526070:three_prime_UTR
ACCGCCGTCTACCCTCGCGG+TGG 0.702706 3_4:+79761857 Msa0526070:five_prime_UTR
CAATGTACACGACCACCGCG+AGG 0.707239 3_4:-79761869 None:intergenic
ACCACCGCGAGGGTAGACGG+CGG 0.802445 3_4:-79761858 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATCAAAATTAGAAT+GGG - chr3_4:79762961-79762980 None:intergenic 10.0%
!! TCATAATATAAAAACATAAA+AGG + chr3_4:79765776-79765795 Msa0526070:three_prime_UTR 10.0%
!!! TTGTTATTTATTGTTAAAGA+AGG + chr3_4:79762243-79762262 Msa0526070:intron 15.0%
!!! TGTTATTTATTGTTAAAGAA+GGG + chr3_4:79762244-79762263 Msa0526070:intron 15.0%
!! CAAATATATCAAAATTAGAA+TGG - chr3_4:79762962-79762981 None:intergenic 15.0%
!! AGAATTTATGAAAATAGATT+AGG + chr3_4:79763290-79763309 Msa0526070:intron 15.0%
!!! TATAACTTTAAAAAATCACT+TGG - chr3_4:79764598-79764617 None:intergenic 15.0%
!! AGTTATATATATAAGAGAAA+TGG + chr3_4:79764611-79764630 Msa0526070:intron 15.0%
!! AATGATTAATGAATATATCA+AGG + chr3_4:79764721-79764740 Msa0526070:intron 15.0%
!! AAATAGATAATTAGATATAG+AGG - chr3_4:79765151-79765170 None:intergenic 15.0%
!!! AATGTTTTTTGTTTTTTGTT+AGG + chr3_4:79765613-79765632 Msa0526070:intron 15.0%
!!! ATGTTTTTTGTTTTTTGTTA+GGG + chr3_4:79765614-79765633 Msa0526070:intron 15.0%
!! AAAAAGTAGAGAAATTGAAA+CGG - chr3_4:79761977-79761996 None:intergenic 20.0%
!! ATAATCAAAGTGAAAAAACA+GGG - chr3_4:79762018-79762037 None:intergenic 20.0%
!!! ATTAAGTTGTTTATCCAAAA+AGG - chr3_4:79762141-79762160 None:intergenic 20.0%
!! GTTATTTATTGTTAAAGAAG+GGG + chr3_4:79762245-79762264 Msa0526070:intron 20.0%
!!! TTTTTATAAGCTATTCTTGA+GGG + chr3_4:79762407-79762426 Msa0526070:intron 20.0%
!!! TTAAAATCTTTTATGTGATG+AGG + chr3_4:79762624-79762643 Msa0526070:intron 20.0%
!! AATGTGTAAATTCATGTTAA+TGG - chr3_4:79762692-79762711 None:intergenic 20.0%
!! ATTGATATCTTTAGTAACTT+TGG - chr3_4:79763679-79763698 None:intergenic 20.0%
!!! TCTAGTCTGTTTTAATTATA+AGG + chr3_4:79763799-79763818 Msa0526070:intron 20.0%
!! TTATAGTAATAAGAACTAGA+AGG - chr3_4:79764167-79764186 None:intergenic 20.0%
!!! AGTTTTATCAAATTCAGTTT+GGG - chr3_4:79764382-79764401 None:intergenic 20.0%
!!! TAGTTTTATCAAATTCAGTT+TGG - chr3_4:79764383-79764402 None:intergenic 20.0%
!! AAACTGAATTTGATAAAACT+AGG + chr3_4:79764382-79764401 Msa0526070:intron 20.0%
!! TTCAATATTGTGATTAATTG+TGG - chr3_4:79764774-79764793 None:intergenic 20.0%
!!! GTATATTTTAACACAAATTC+TGG + chr3_4:79764818-79764837 Msa0526070:intron 20.0%
!! ATATTTGAACACAATTTCAA+TGG + chr3_4:79764892-79764911 Msa0526070:intron 20.0%
!!! TCGAAATTTGTGTTAAATTT+TGG + chr3_4:79765111-79765130 Msa0526070:intron 20.0%
!!! CGAAATTTGTGTTAAATTTT+GGG + chr3_4:79765112-79765131 Msa0526070:intron 20.0%
!! TACTTCTATGAAAATAGTAA+GGG - chr3_4:79765807-79765826 None:intergenic 20.0%
!! ATACTTCTATGAAAATAGTA+AGG - chr3_4:79765808-79765827 None:intergenic 20.0%
!!! TTTTATTATACGCTTTCTTT+TGG + chr3_4:79765960-79765979 Msa0526070:three_prime_UTR 20.0%
! GATAATCAAAGTGAAAAAAC+AGG - chr3_4:79762019-79762038 None:intergenic 25.0%
!! GTAGTGATTTATCTTACTTT+TGG + chr3_4:79762041-79762060 Msa0526070:intron 25.0%
! ACATCAATATTGTAGTGATA+AGG - chr3_4:79762285-79762304 None:intergenic 25.0%
!! GTTTTTATAAGCTATTCTTG+AGG + chr3_4:79762406-79762425 Msa0526070:intron 25.0%
! TTTCTATAAGCTCTTTCAAA+CGG + chr3_4:79762476-79762495 Msa0526070:intron 25.0%
!! TAATTAGGGTTTGTTTGAAT+TGG - chr3_4:79762542-79762561 None:intergenic 25.0%
!! GTTATATTTTTCCAAATTGC+AGG + chr3_4:79762786-79762805 Msa0526070:intron 25.0%
!!! TTGTGACTTTTTCTTTTGTT+TGG + chr3_4:79762979-79762998 Msa0526070:intron 25.0%
! CAGAACATAATTTCACATAA+GGG - chr3_4:79763013-79763032 None:intergenic 25.0%
! ACAGAACATAATTTCACATA+AGG - chr3_4:79763014-79763033 None:intergenic 25.0%
! TGAAATTATGTTCTGTCTTT+GGG + chr3_4:79763018-79763037 Msa0526070:intron 25.0%
!!! TTTTAATGCTTGAGGTATTT+AGG + chr3_4:79763073-79763092 Msa0526070:intron 25.0%
! AATAAACTGTTTATCCAAAC+AGG - chr3_4:79763134-79763153 None:intergenic 25.0%
!!! ACTGATTATCAAGCTTTTTT+CGG - chr3_4:79763316-79763335 None:intergenic 25.0%
! TAGATAAACTCAAATAAGCT+TGG + chr3_4:79763378-79763397 Msa0526070:intron 25.0%
! AGATAAACTCAAATAAGCTT+GGG + chr3_4:79763379-79763398 Msa0526070:intron 25.0%
! GGGAACAAATATGATATTTA+CGG + chr3_4:79763515-79763534 Msa0526070:intron 25.0%
!!! AATTTTGACAAATGCTAAAC+AGG + chr3_4:79763576-79763595 Msa0526070:intron 25.0%
!! GGTAGAGAACAAATATTTTT+GGG - chr3_4:79763716-79763735 None:intergenic 25.0%
! CAAAAATATTTGTTCTCTAC+CGG + chr3_4:79763715-79763734 Msa0526070:intron 25.0%
!! TTCTTGCTAATTCATTTTGA+TGG + chr3_4:79763752-79763771 Msa0526070:intron 25.0%
! ACAGACTAGATGAAAATAAA+AGG - chr3_4:79763789-79763808 None:intergenic 25.0%
!!! AATAACTGGAATGCTTTTTA+TGG - chr3_4:79763852-79763871 None:intergenic 25.0%
!! AATCCATTTAAAATCTACAG+GGG - chr3_4:79764195-79764214 None:intergenic 25.0%
!! GAATCCATTTAAAATCTACA+GGG - chr3_4:79764196-79764215 None:intergenic 25.0%
!! TGAATCCATTTAAAATCTAC+AGG - chr3_4:79764197-79764216 None:intergenic 25.0%
! AATATCTTCAACTGAAACAA+TGG + chr3_4:79764352-79764371 Msa0526070:intron 25.0%
! ATATCTTCAACTGAAACAAT+GGG + chr3_4:79764353-79764372 Msa0526070:intron 25.0%
!! CTTTAAAAAATCACTTGGAT+TGG - chr3_4:79764593-79764612 None:intergenic 25.0%
! AAATATACACCTAAAAAACG+TGG - chr3_4:79764806-79764825 None:intergenic 25.0%
!! ATTATGATTGTGAAGTATCT+TGG + chr3_4:79765253-79765272 Msa0526070:intron 25.0%
! GACATTTAGTTGTAAATTTG+AGG + chr3_4:79766058-79766077 Msa0526070:three_prime_UTR 25.0%
AAAGAAGAAAACCTGAAGAA+TGG - chr3_4:79761917-79761936 None:intergenic 30.0%
GTACAAGAATGTGAATCATA+AGG - chr3_4:79762323-79762342 None:intergenic 30.0%
! AAGTCAAACTGTTTTCATGT+AGG + chr3_4:79762374-79762393 Msa0526070:intron 30.0%
ACAAACCCTAATTAATTGAC+TGG + chr3_4:79762548-79762567 Msa0526070:intron 30.0%
CAAACCCTAATTAATTGACT+GGG + chr3_4:79762549-79762568 Msa0526070:intron 30.0%
ATCTCCCAGTCAATTAATTA+GGG - chr3_4:79762556-79762575 None:intergenic 30.0%
AATCTCCCAGTCAATTAATT+AGG - chr3_4:79762557-79762576 None:intergenic 30.0%
CAATTTCCTTCACAAATGAA+TGG - chr3_4:79762600-79762619 None:intergenic 30.0%
! TTTTATGTGATGAGGTCATA+TGG + chr3_4:79762632-79762651 Msa0526070:intron 30.0%
! TGTTATGCTACTCAAACTTT+TGG - chr3_4:79762664-79762683 None:intergenic 30.0%
GTGAAATTATGTTCTGTCTT+TGG + chr3_4:79763017-79763036 Msa0526070:intron 30.0%
! AGTGTGATTTTTAATGCTTG+AGG + chr3_4:79763065-79763084 Msa0526070:intron 30.0%
TTATGCATAAGTGCTTATCA+TGG - chr3_4:79763181-79763200 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr3_4:79763353-79763372 None:intergenic 30.0%
! TTCTAGTAACAAAGGTTTTG+TGG + chr3_4:79763413-79763432 Msa0526070:intron 30.0%
AGACACAAAATAACTACTAC+TGG - chr3_4:79763442-79763461 None:intergenic 30.0%
!! AGTAGTTATTTTGTGTCTGT+TGG + chr3_4:79763444-79763463 Msa0526070:intron 30.0%
!! GTAGTTATTTTGTGTCTGTT+GGG + chr3_4:79763445-79763464 Msa0526070:intron 30.0%
!! TAGTTATTTTGTGTCTGTTG+GGG + chr3_4:79763446-79763465 Msa0526070:intron 30.0%
TGACAAAACCAAAAGCAAAA+TGG - chr3_4:79763475-79763494 None:intergenic 30.0%
!!! TTTTGCTTTTGGTTTTGTCA+TGG + chr3_4:79763475-79763494 Msa0526070:intron 30.0%
! CGGTAGAGAACAAATATTTT+TGG - chr3_4:79763717-79763736 None:intergenic 30.0%
AAGAAAACATTGCTATCTTC+CGG - chr3_4:79763737-79763756 None:intergenic 30.0%
!! AATTCATTTTGATGGAATGC+AGG + chr3_4:79763760-79763779 Msa0526070:intron 30.0%
! AAAGCATTCCAGTTATTATC+CGG + chr3_4:79763855-79763874 Msa0526070:intron 30.0%
TGATAGCTGAAAACTAATAC+AGG - chr3_4:79763918-79763937 None:intergenic 30.0%
! CATAGTACTGAAAATAGTTC+TGG + chr3_4:79764097-79764116 Msa0526070:intron 30.0%
!!! GTTAGTTTTCTTGTTGACTT+TGG + chr3_4:79764230-79764249 Msa0526070:intron 30.0%
! GACACTATATATTGCTGATT+TGG + chr3_4:79764291-79764310 Msa0526070:intron 30.0%
TATCTTCAACTGAAACAATG+GGG + chr3_4:79764354-79764373 Msa0526070:intron 30.0%
CTGAATTTGATAAAACTAGG+AGG + chr3_4:79764385-79764404 Msa0526070:intron 30.0%
ACATCTACTGGTAATTGAAA+CGG + chr3_4:79764431-79764450 Msa0526070:intron 30.0%
ATCTAAATTGTTGTCGAATC+TGG - chr3_4:79764661-79764680 None:intergenic 30.0%
AGATTCGACAACAATTTAGA+TGG + chr3_4:79764660-79764679 Msa0526070:intron 30.0%
GTTAACGCAATTCAAATACA+TGG + chr3_4:79764682-79764701 Msa0526070:intron 30.0%
!!! TGTCATTAACCACGTTTTTT+AGG + chr3_4:79764794-79764813 Msa0526070:intron 30.0%
ATTTGAACACCTAAAAATCG+TGG + chr3_4:79764935-79764954 Msa0526070:intron 30.0%
! CATCATTAACCACGATTTTT+AGG - chr3_4:79764947-79764966 None:intergenic 30.0%
GTTAATGATGTTCAAAATCG+TGG + chr3_4:79764957-79764976 Msa0526070:intron 30.0%
TGTGTTTAGTGAATGGTTAA+TGG + chr3_4:79765003-79765022 Msa0526070:intron 30.0%
GTGTTTAGTGAATGGTTAAT+GGG + chr3_4:79765004-79765023 Msa0526070:intron 30.0%
GATGGTTAATGAAGATAACA+AGG - chr3_4:79765038-79765057 None:intergenic 30.0%
GTATGGTTAATTACGTTCAT+TGG - chr3_4:79765060-79765079 None:intergenic 30.0%
GTTAAGACAGTTCAAATGTA+TGG - chr3_4:79765077-79765096 None:intergenic 30.0%
GTCTTCTAAATGCAATCATA+CGG - chr3_4:79765195-79765214 None:intergenic 30.0%
!! TGAGTTTGCTATAGAAAATC+GGG - chr3_4:79765497-79765516 None:intergenic 30.0%
!! GTGAGTTTGCTATAGAAAAT+CGG - chr3_4:79765498-79765517 None:intergenic 30.0%
! TTTTCTATAGCAAACTCACT+TGG + chr3_4:79765499-79765518 Msa0526070:intron 30.0%
AGCCAACCATTTGAATAATT+CGG + chr3_4:79765724-79765743 Msa0526070:CDS 30.0%
AAGTTGCCGAATTATTCAAA+TGG - chr3_4:79765733-79765752 None:intergenic 30.0%
AAGCATGTTTATATGCTTCT+AGG + chr3_4:79765855-79765874 Msa0526070:three_prime_UTR 30.0%
!! TTTATATGCTTCTAGGACAA+GGG + chr3_4:79765862-79765881 Msa0526070:three_prime_UTR 30.0%
TTTACAAGTTACAACCTTCA+TGG + chr3_4:79765927-79765946 Msa0526070:three_prime_UTR 30.0%
AAAATGAAATGTCACCATGA+AGG - chr3_4:79765944-79765963 None:intergenic 30.0%
TTCATTACATTGCACAATCA+GGG - chr3_4:79766106-79766125 None:intergenic 30.0%
ATTCATTACATTGCACAATC+AGG - chr3_4:79766107-79766126 None:intergenic 30.0%
! CATGAAGAATACAGCCTTTT+TGG + chr3_4:79762124-79762143 Msa0526070:intron 35.0%
TGAATCATAAGGTGGTTTGA+GGG - chr3_4:79762312-79762331 None:intergenic 35.0%
CAAGAATGTGAATCATAAGG+TGG - chr3_4:79762320-79762339 None:intergenic 35.0%
! ACTGTTTTCATGTAGGCTAT+AGG + chr3_4:79762381-79762400 Msa0526070:intron 35.0%
CAATCACCATTCATTTGTGA+AGG + chr3_4:79762591-79762610 Msa0526070:intron 35.0%
TTCAATTACAGCCTGCAATT+TGG - chr3_4:79762800-79762819 None:intergenic 35.0%
TTGTAAAGAAACTAACGCAC+CGG - chr3_4:79762870-79762889 None:intergenic 35.0%
GATGTTCCTTGCTTGAAAAA+AGG - chr3_4:79762911-79762930 None:intergenic 35.0%
GGAACATCAGTCAGAATAAT+TGG + chr3_4:79762923-79762942 Msa0526070:CDS 35.0%
TAAATGCATAACAAGACCTG+AGG - chr3_4:79763108-79763127 None:intergenic 35.0%
!! TCAGGTCTTGTTATGCATTT+AGG + chr3_4:79763107-79763126 Msa0526070:intron 35.0%
!! CAGGTCTTGTTATGCATTTA+GGG + chr3_4:79763108-79763127 Msa0526070:intron 35.0%
!! GCTGTTTTCATGAGCTATAT+TGG + chr3_4:79763267-79763286 Msa0526070:intron 35.0%
CAGTGAACTTCTAGTAACAA+AGG + chr3_4:79763405-79763424 Msa0526070:intron 35.0%
! TTTTGTCATGGATTTGTAGC+AGG + chr3_4:79763487-79763506 Msa0526070:intron 35.0%
AATAAACCCCTCAATCTTAG+AGG + chr3_4:79763651-79763670 Msa0526070:intron 35.0%
!! TTTGGAACCTCTAAGATTGA+GGG - chr3_4:79763661-79763680 None:intergenic 35.0%
TCATGTGATCTTTCCATTCA+TGG + chr3_4:79764029-79764048 Msa0526070:intron 35.0%
! GAATCACCAAACTTCAGTTT+TGG + chr3_4:79764140-79764159 Msa0526070:intron 35.0%
! TTGCCCCTGTAGATTTTAAA+TGG + chr3_4:79764189-79764208 Msa0526070:intron 35.0%
ATCTTCAACTGAAACAATGG+GGG + chr3_4:79764355-79764374 Msa0526070:intron 35.0%
TTGATAAAACTAGGAGGTTG+AGG + chr3_4:79764391-79764410 Msa0526070:intron 35.0%
TAACCATAGAAGACATCTAC+TGG + chr3_4:79764419-79764438 Msa0526070:intron 35.0%
TTACCAGTAGATGTCTTCTA+TGG - chr3_4:79764425-79764444 None:intergenic 35.0%
CAAACTAACCTACCGAAATT+GGG + chr3_4:79764499-79764518 Msa0526070:intron 35.0%
AAGCAACTGTGTTTAGTGAA+TGG + chr3_4:79764996-79765015 Msa0526070:intron 35.0%
GGTTAATTACGTTCATTGGA+TGG - chr3_4:79765056-79765075 None:intergenic 35.0%
TTCTAAATGCAATCATACGG+TGG - chr3_4:79765192-79765211 None:intergenic 35.0%
! AAGGACCTTAAGTTTCAAGT+TGG + chr3_4:79765384-79765403 Msa0526070:CDS 35.0%
CAGATCCAACTTGAAACTTA+AGG - chr3_4:79765392-79765411 None:intergenic 35.0%
! TTTGCTATAGAAAATCGGGT+AGG - chr3_4:79765493-79765512 None:intergenic 35.0%
! TTTTTGTTAGGGAGTTTTGC+AGG + chr3_4:79765625-79765644 Msa0526070:intron 35.0%
AAACTGTTTCAAAAGCAGCA+AGG - chr3_4:79765702-79765721 None:intergenic 35.0%
TGCCGAATTATTCAAATGGT+TGG - chr3_4:79765729-79765748 None:intergenic 35.0%
ATTCGGCAACTTAACTTTGT+AGG + chr3_4:79765741-79765760 Msa0526070:exon 35.0%
!! GTTTATATGCTTCTAGGACA+AGG + chr3_4:79765861-79765880 Msa0526070:three_prime_UTR 35.0%
!! GCTTTCTTTTGGCTACAAAT+AGG + chr3_4:79765971-79765990 Msa0526070:three_prime_UTR 35.0%
AAACCTGAAGAATGGACAGA+GGG - chr3_4:79761909-79761928 None:intergenic 40.0%
AAAACCTGAAGAATGGACAG+AGG - chr3_4:79761910-79761929 None:intergenic 40.0%
GTGAATCATAAGGTGGTTTG+AGG - chr3_4:79762313-79762332 None:intergenic 40.0%
GCATCATTCGAAGCAAAATC+CGG + chr3_4:79762848-79762867 Msa0526070:CDS 40.0%
GCTTGAAAAAAGGAGACGAT+GGG - chr3_4:79762901-79762920 None:intergenic 40.0%
TGCTTGAAAAAAGGAGACGA+TGG - chr3_4:79762902-79762921 None:intergenic 40.0%
!!! TCGTCTCCTTTTTTCAAGCA+AGG + chr3_4:79762902-79762921 Msa0526070:CDS 40.0%
!!! TTTGGGTTTTGTTGCTGATG+AGG + chr3_4:79763035-79763054 Msa0526070:intron 40.0%
ATTTAGGTAATCCCATCCTC+AGG + chr3_4:79763089-79763108 Msa0526070:intron 40.0%
! TTATGCATTTAGGGCCTGTT+TGG + chr3_4:79763117-79763136 Msa0526070:intron 40.0%
! TGGGGTTACCATTTTGCTTT+TGG + chr3_4:79763464-79763483 Msa0526070:intron 40.0%
GTAGTGTTAGTCATGCAGAT+AGG + chr3_4:79763553-79763572 Msa0526070:intron 40.0%
AGGTATAGATTTCACCAGCT+AGG + chr3_4:79763596-79763615 Msa0526070:intron 40.0%
!! TTGGAACCTCTAAGATTGAG+GGG - chr3_4:79763660-79763679 None:intergenic 40.0%
!! CTTTGGAACCTCTAAGATTG+AGG - chr3_4:79763662-79763681 None:intergenic 40.0%
AGCTATCAAACCTGAACACA+GGG + chr3_4:79763930-79763949 Msa0526070:intron 40.0%
ACAATAAAGACCCTGTGTTC+AGG - chr3_4:79763943-79763962 None:intergenic 40.0%
GTGATCTTTCCATTCATGGA+TGG + chr3_4:79764033-79764052 Msa0526070:intron 40.0%
CCATCAATACCATCCATGAA+TGG - chr3_4:79764045-79764064 None:intergenic 40.0%
! CCATTCATGGATGGTATTGA+TGG + chr3_4:79764042-79764061 Msa0526070:intron 40.0%
CACAGAGAGTTAGAATTCTC+AGG - chr3_4:79764073-79764092 None:intergenic 40.0%
CTGAGAATTCTAACTCTCTG+TGG + chr3_4:79764071-79764090 Msa0526070:intron 40.0%
GAAGGACCAAAACTGAAGTT+TGG - chr3_4:79764149-79764168 None:intergenic 40.0%
!! TTTGGCTTGAATAGAACACC+CGG + chr3_4:79764309-79764328 Msa0526070:intron 40.0%
! CCAATTTCGGTAGGTTAGTT+TGG - chr3_4:79764501-79764520 None:intergenic 40.0%
CCAAACTAACCTACCGAAAT+TGG + chr3_4:79764498-79764517 Msa0526070:intron 40.0%
TAACCTACCGAAATTGGGAA+TGG + chr3_4:79764504-79764523 Msa0526070:intron 40.0%
AACCTACCGAAATTGGGAAT+GGG + chr3_4:79764505-79764524 Msa0526070:intron 40.0%
ATTCTCCCCATTCCCAATTT+CGG - chr3_4:79764514-79764533 None:intergenic 40.0%
ATCAAACCTAAGACCTTGAG+AGG + chr3_4:79764532-79764551 Msa0526070:intron 40.0%
! AGAGTATTCGTGTAACCTGT+GGG - chr3_4:79765298-79765317 None:intergenic 40.0%
!! AAGAGTATTCGTGTAACCTG+TGG - chr3_4:79765299-79765318 None:intergenic 40.0%
! CACGAATACTCTTTAGAGAC+AGG + chr3_4:79765306-79765325 Msa0526070:CDS 40.0%
! AGTTAGTACTGAGCATCTGA+AGG + chr3_4:79765365-79765384 Msa0526070:CDS 40.0%
GGATCTGTCTACCAATTCAT+TGG + chr3_4:79765405-79765424 Msa0526070:CDS 40.0%
TAAGAAGCTCGCCAATGAAT+TGG - chr3_4:79765419-79765438 None:intergenic 40.0%
! TCTTATCCGAACTGATGATG+AGG + chr3_4:79765434-79765453 Msa0526070:CDS 40.0%
ATAGAAAATCGGGTAGGCTA+AGG - chr3_4:79765487-79765506 None:intergenic 40.0%
CATGATGACATCAAAGAGTG+TGG + chr3_4:79765995-79766014 Msa0526070:three_prime_UTR 40.0%
!! AGTGTGGCTTTTATTTGAGC+TGG + chr3_4:79766011-79766030 Msa0526070:three_prime_UTR 40.0%
AATATGCTGTGCATGCTTCA+CGG + chr3_4:79766034-79766053 Msa0526070:three_prime_UTR 40.0%
CTGGGAGATTGTCGAAACTA+TGG + chr3_4:79762567-79762586 Msa0526070:intron 45.0%
TAGTAGCAAGTGAAGCCTGA+TGG + chr3_4:79762826-79762845 Msa0526070:exon 45.0%
TTGCTTCGAATGATGCCATC+AGG - chr3_4:79762844-79762863 None:intergenic 45.0%
GCATAACAAGACCTGAGGAT+GGG - chr3_4:79763103-79763122 None:intergenic 45.0%
TGCATAACAAGACCTGAGGA+TGG - chr3_4:79763104-79763123 None:intergenic 45.0%
ATGGATTTGTAGCAGGACTG+CGG + chr3_4:79763494-79763513 Msa0526070:intron 45.0%
GATTTCACCAGCTAGGAGAA+AGG + chr3_4:79763603-79763622 Msa0526070:intron 45.0%
TATGCTACCTTTCTCCTAGC+TGG - chr3_4:79763613-79763632 None:intergenic 45.0%
TGCAAGGTCCGGATAATAAC+TGG - chr3_4:79763866-79763885 None:intergenic 45.0%
AGTTATTATCCGGACCTTGC+AGG + chr3_4:79763865-79763884 Msa0526070:intron 45.0%
ATAAAACCTCCTGCAAGGTC+CGG - chr3_4:79763877-79763896 None:intergenic 45.0%
GCTAGATAAAACCTCCTGCA+AGG - chr3_4:79763882-79763901 None:intergenic 45.0%
CAGCTATCAAACCTGAACAC+AGG + chr3_4:79763929-79763948 Msa0526070:intron 45.0%
! TTGGCTTGAATAGAACACCC+GGG + chr3_4:79764310-79764329 Msa0526070:intron 45.0%
TCAAATTGATGCAGTTCCCC+GGG - chr3_4:79764330-79764349 None:intergenic 45.0%
CTCAAATTGATGCAGTTCCC+CGG - chr3_4:79764331-79764350 None:intergenic 45.0%
ACCTACCGAAATTGGGAATG+GGG + chr3_4:79764506-79764525 Msa0526070:intron 45.0%
!! AATCACTTGGATTGGCCAAG+TGG - chr3_4:79764585-79764604 None:intergenic 45.0%
ACTTGTGTAATGCATCCCAC+AGG + chr3_4:79765280-79765299 Msa0526070:intron 45.0%
TACCATCGATGACTGTTGCA+AGG - chr3_4:79765332-79765351 None:intergenic 45.0%
CACGTACCTCATCATCAGTT+CGG - chr3_4:79765443-79765462 None:intergenic 45.0%
AATACACGTTCACCCACAAC+CGG + chr3_4:79765542-79765561 Msa0526070:intron 45.0%
! CGTGTTGGTAGAAATGTCGA+CGG + chr3_4:79765650-79765669 Msa0526070:CDS 45.0%
! GTGTTGGTAGAAATGTCGAC+GGG + chr3_4:79765651-79765670 Msa0526070:CDS 45.0%
ATATGCTGTGCATGCTTCAC+GGG + chr3_4:79766035-79766054 Msa0526070:three_prime_UTR 45.0%
AAGCCCTCTGTCCATTCTTC+AGG + chr3_4:79761903-79761922 Msa0526070:five_prime_UTR 50.0%
TGGATTTGTAGCAGGACTGC+GGG + chr3_4:79763495-79763514 Msa0526070:intron 50.0%
TATTATCCGGACCTTGCAGG+AGG + chr3_4:79763868-79763887 Msa0526070:intron 50.0%
TGGCTTGAATAGAACACCCG+GGG + chr3_4:79764311-79764330 Msa0526070:intron 50.0%
TCCCCATTCCCAATTTCGGT+AGG - chr3_4:79764510-79764529 None:intergenic 50.0%
TGTGCTCCTCTCAAGGTCTT+AGG - chr3_4:79764541-79764560 None:intergenic 50.0%
!! TGGCCAAGTGGTGTTGACTT+GGG - chr3_4:79764573-79764592 None:intergenic 50.0%
!! TTGGCCAAGTGGTGTTGACT+TGG - chr3_4:79764574-79764593 None:intergenic 50.0%
! GGTGGCTTGTAGCAATCGAA+TGG - chr3_4:79765174-79765193 None:intergenic 50.0%
GATGAGGTACGTGCTTGTCA+AGG + chr3_4:79765450-79765469 Msa0526070:intron 50.0%
GGTACGTGCTTGTCAAGGTT+TGG + chr3_4:79765455-79765474 Msa0526070:intron 50.0%
!! TTTCTGCATGCACCGGTTGT+GGG - chr3_4:79765557-79765576 None:intergenic 50.0%
TCACACCTTTCTGCATGCAC+CGG - chr3_4:79765564-79765583 None:intergenic 50.0%
TATGCTGTGCATGCTTCACG+GGG + chr3_4:79766036-79766055 Msa0526070:three_prime_UTR 50.0%
GAGGCTCTGCGACAAACTTA+AGG + chr3_4:79766077-79766096 Msa0526070:three_prime_UTR 50.0%
AATGTACACGACCACCGCGA+GGG - chr3_4:79761871-79761890 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - chr3_4:79764548-79764567 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG + chr3_4:79764546-79764565 Msa0526070:intron 55.0%
!! GTGGTGTTGACTTGGGACCT+TGG - chr3_4:79764566-79764585 None:intergenic 55.0%
GGTCCCAAGTCAACACCACT+TGG + chr3_4:79764567-79764586 Msa0526070:intron 55.0%
GGCCTTGCAACAGTCATCGA+TGG + chr3_4:79765327-79765346 Msa0526070:CDS 55.0%
!! CTTTCTGCATGCACCGGTTG+TGG - chr3_4:79765558-79765577 None:intergenic 55.0%
CACAACCGGTGCATGCAGAA+AGG + chr3_4:79765556-79765575 Msa0526070:intron 55.0%
! GGAGTTTTGCAGGCACGTGT+TGG + chr3_4:79765635-79765654 Msa0526070:CDS 55.0%
CAATGTACACGACCACCGCG+AGG - chr3_4:79761872-79761891 None:intergenic 60.0%
ACGACCACCGCGAGGGTAGA+CGG - chr3_4:79761864-79761883 None:intergenic 65.0%
CGGCGGTGGAGGCAGAACAG+AGG - chr3_4:79761844-79761863 None:intergenic 70.0%
TCCACCGCCGTCTACCCTCG+CGG + chr3_4:79761854-79761873 Msa0526070:five_prime_UTR 70.0%
ACCACCGCGAGGGTAGACGG+CGG - chr3_4:79761861-79761880 None:intergenic 70.0%
GCGAGGGTAGACGGCGGTGG+AGG - chr3_4:79761855-79761874 None:intergenic 75.0%
ACCGCGAGGGTAGACGGCGG+TGG - chr3_4:79761858-79761877 None:intergenic 75.0%
ACCGCCGTCTACCCTCGCGG+TGG + chr3_4:79761857-79761876 Msa0526070:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 79761807 79766142 79761807 ID=Msa0526070;Name=Msa0526070
chr3_4 mRNA 79761807 79766142 79761807 ID=Msa0526070-mRNA-1;Parent=Msa0526070;Name=Msa0526070-mRNA-1;_AED=0.15;_eAED=0.15;_QI=155|1|1|1|0.66|0.5|4|388|125
chr3_4 exon 79761807 79761924 79761807 ID=Msa0526070-mRNA-1:exon:23897;Parent=Msa0526070-mRNA-1
chr3_4 exon 79762808 79762948 79762808 ID=Msa0526070-mRNA-1:exon:23898;Parent=Msa0526070-mRNA-1
chr3_4 exon 79765302 79765455 79765302 ID=Msa0526070-mRNA-1:exon:23899;Parent=Msa0526070-mRNA-1
chr3_4 exon 79765635 79766142 79765635 ID=Msa0526070-mRNA-1:exon:23900;Parent=Msa0526070-mRNA-1
chr3_4 five_prime_UTR 79761807 79761924 79761807 ID=Msa0526070-mRNA-1:five_prime_utr;Parent=Msa0526070-mRNA-1
chr3_4 five_prime_UTR 79762808 79762844 79762808 ID=Msa0526070-mRNA-1:five_prime_utr;Parent=Msa0526070-mRNA-1
chr3_4 CDS 79762845 79762948 79762845 ID=Msa0526070-mRNA-1:cds;Parent=Msa0526070-mRNA-1
chr3_4 CDS 79765302 79765455 79765302 ID=Msa0526070-mRNA-1:cds;Parent=Msa0526070-mRNA-1
chr3_4 CDS 79765635 79765754 79765635 ID=Msa0526070-mRNA-1:cds;Parent=Msa0526070-mRNA-1
chr3_4 three_prime_UTR 79765755 79766142 79765755 ID=Msa0526070-mRNA-1:three_prime_utr;Parent=Msa0526070-mRNA-1
Gene Sequence

>Msa0526070

ATGGCATCATTCGAAGCAAAATCCGGTGCGTTAGTTTCTTTACAAGATTTGCGCCCATCGTCTCCTTTTTTCAAGCAAGGAACATCAGTCAGAATAATTGGAAAGTTACACGAATACTCTTTAGAGACAGGCCTTGCAACAGTCATCGATGGTAATGACATTCTAAAAGTTAGTACTGAGCATCTGAAGGACCTTAAGTTTCAAGTTGGATCTGTCTACCAATTCATTGGCGAGCTTCTTATCCGAACTGATGATGAGGGAGTTTTGCAGGCACGTGTTGGTAGAAATGTCGACGGGATTGATCTCAATCTTTATCATCAGTCCTTGCTGCTTTTGAAACAGTTTCAAGCCAACCATTTGAATAATTCGGCAACTTAA

Protein sequence

>Msa0526070

MASFEAKSGALVSLQDLRPSSPFFKQGTSVRIIGKLHEYSLETGLATVIDGNDILKVSTEHLKDLKFQVGSVYQFIGELLIRTDDEGVLQARVGRNVDGIDLNLYHQSLLLLKQFQANHLNNSAT*