AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0867070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867070 MtrunA17_Chr4g0070961 93.134 335 19 1 1 335 1 331 0.0 640
Msa0867070 MtrunA17_Chr4g0067151 34.783 92 53 1 164 248 67 158 1.20e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0867070 AT2G19430.1 61.230 374 133 5 4 376 1 363 5.27e-163 461
Msa0867070 AT3G49660.1 40.000 75 45 0 174 248 77 151 6.40e-12 66.2

Find 125 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTCTAATCACAATATT+TGG 0.075756 5_4:-69727989 Msa0867070:three_prime_UTR
CATACAAACTCGTTCTAAAA+AGG 0.203211 5_4:+69727948 None:intergenic
GCAAAACATTTGAAGTTAAA+AGG 0.211891 5_4:-69729975 Msa0867070:CDS
AGGATGGGACAACACGAATT+TGG 0.216018 5_4:-69730202 Msa0867070:CDS
TGCTCACTACTTGTGCTTAT+TGG 0.233705 5_4:-69727925 Msa0867070:three_prime_UTR
ATGTCAGATTAGAATTCTTT+AGG 0.235444 5_4:+69728052 None:intergenic
TCCTCTCTCTTTGTGTAAAC+AGG 0.279060 5_4:+69728146 None:intergenic
TAGATTTATAATTGTTGATT+TGG 0.283496 5_4:-69728344 Msa0867070:three_prime_UTR
CTCTTTGTGTAAACAGGTTC+AGG 0.284936 5_4:+69728152 None:intergenic
TGTCAGATTAGAATTCTTTA+GGG 0.299242 5_4:+69728053 None:intergenic
TAAAATGCAAACCAGGATTA+AGG 0.306569 5_4:-69728175 Msa0867070:three_prime_UTR
GGATGGGACAACACGAATTT+GGG 0.307224 5_4:-69730201 Msa0867070:CDS
GTGGATGTAATCTCGCAATT+TGG 0.311284 5_4:-69728482 Msa0867070:CDS
TTCCTCTAATCACAATATTT+GGG 0.314186 5_4:-69727988 Msa0867070:three_prime_UTR
GTTGTCTTTCAGAGGTCCTT+GGG 0.323620 5_4:-69731471 Msa0867070:intron
CGCCAACTCCGCCACGGTAT+TGG 0.330763 5_4:+69728305 None:intergenic
AACGATGTGCAGATCATAAC+AGG 0.337053 5_4:-69730230 Msa0867070:intron
GTTTAATGTTTCTAGGAAAC+TGG 0.340022 5_4:-69731161 Msa0867070:intron
TCTATCTCCTTACATCCATC+AGG 0.341273 5_4:-69728683 Msa0867070:CDS
GTAAATTGAAACCAACAAAA+TGG 0.346985 5_4:-69728221 Msa0867070:three_prime_UTR
TGTTGCTACAAGATAGCCTT+TGG 0.349472 5_4:+69728121 None:intergenic
TGTTGTCTTTCAGAGGTCCT+TGG 0.354263 5_4:-69731472 Msa0867070:intron
ATCCCAAATATTGTGATTAG+AGG 0.356269 5_4:+69727986 None:intergenic
CGCATCTTCGTTCCAGTTTG+TGG 0.356320 5_4:+69734258 None:intergenic
CTCTTCGTTGCTTCCAGTGA+TGG 0.369177 5_4:-69734133 Msa0867070:CDS
AATATTGTGATTAGAGGAAT+AGG 0.386278 5_4:+69727992 None:intergenic
ACGAAAATGCTCTCTTGCTC+AGG 0.401510 5_4:-69733747 Msa0867070:intron
GTGATTCTTGTGCATATTGT+TGG 0.401550 5_4:-69731286 Msa0867070:CDS
AGCGGAGATGGTGGAAGGGA+GGG 0.402085 5_4:+69734093 None:intergenic
ACAGCAATAGCATTATTCTC+AGG 0.410350 5_4:+69731431 None:intergenic
TGTTTGGTGACGCCACAAAC+TGG 0.414965 5_4:-69734270 Msa0867070:CDS
AGTTAAAAGGACCTGTTTCA+TGG 0.420518 5_4:-69729962 Msa0867070:CDS
AAGCGGAGATGGTGGAAGGG+AGG 0.424668 5_4:+69734092 None:intergenic
GTTATTGCCGTTGGTGGCTA+CGG 0.445837 5_4:-69728512 Msa0867070:CDS
ACAGAGCCAACCCATGAAAC+AGG 0.449169 5_4:+69729951 None:intergenic
TCAATTTACACTGAAGTATG+TGG 0.453283 5_4:+69728235 None:intergenic
TGCTCGCAACTCATCCAATC+AGG 0.461422 5_4:-69731087 Msa0867070:intron
TGCTTATTTCAAGCGCATCA+TGG 0.463772 5_4:-69733802 Msa0867070:CDS
CTTGACAGTTGTGGTGATGA+TGG 0.464399 5_4:-69733005 Msa0867070:intron
CACTGAAGTATGTGGGTTTG+AGG 0.464570 5_4:+69728243 None:intergenic
ACATACCCCTGATGGATGTA+AGG 0.465449 5_4:+69728676 None:intergenic
AAAGGACCTGTTTCATGGGT+TGG 0.466225 5_4:-69729957 Msa0867070:CDS
ATCCAATACCGTGGCGGAGT+TGG 0.471329 5_4:-69728307 Msa0867070:three_prime_UTR
TTTCAGGTTATTGCCGTTGG+TGG 0.474271 5_4:-69728518 Msa0867070:intron
GCATTTCAGATTCTGACAGT+TGG 0.475090 5_4:-69728785 Msa0867070:intron
TGATTCTTGTGCATATTGTT+GGG 0.475321 5_4:-69731285 Msa0867070:CDS
TGCGCTTGAAATAAGCAATC+TGG 0.475871 5_4:+69733808 None:intergenic
ACAGGTTCAGGCCTTAATCC+TGG 0.483482 5_4:+69728164 None:intergenic
AGCCCAAGCAGTTCTGAAAA+CGG 0.486915 5_4:+69734192 None:intergenic
GTTCTACAGGCTTGCAGTAG+TGG 0.489666 5_4:-69729402 Msa0867070:intron
TCGTTTCAGGTTATTGCCGT+TGG 0.495898 5_4:-69728521 Msa0867070:intron
TTCCACTCGAGCTTCTGTAC+AGG 0.497682 5_4:-69729328 Msa0867070:CDS
CTTTAGATGCAAGTGAGAGC+TGG 0.499219 5_4:-69729926 Msa0867070:CDS
GCTTATTTCAAGCGCATCAT+GGG 0.499422 5_4:-69733801 Msa0867070:CDS
AGAAGCGATGGAACCATCAC+TGG 0.501271 5_4:+69734120 None:intergenic
CGAGTGATGGGTACAATGTT+TGG 0.505525 5_4:-69734286 Msa0867070:exon
AAGTATAATATTTCTTCAGA+AGG 0.506098 5_4:-69732942 Msa0867070:intron
GAAAGATAGCGAGCGAGTGA+TGG 0.507336 5_4:-69734299 Msa0867070:exon
TTTAATGTGCACTCTGCAGC+AGG 0.510994 5_4:+69729354 None:intergenic
CAGCAATAGCATTATTCTCA+GGG 0.512448 5_4:+69731432 None:intergenic
TGCTATTGCTGTAAATACTC+AGG 0.516864 5_4:-69731420 Msa0867070:intron
CTAAACACTTACTTGTGTTG+AGG 0.519895 5_4:+69731905 None:intergenic
TTGTTGATTTGGCAGTAAAA+CGG 0.523170 5_4:-69728333 Msa0867070:three_prime_UTR
GCTTATGATGTCAAATTCTA+CGG 0.523884 5_4:-69733775 Msa0867070:CDS
GGTGATGATGGGCGGATTCG+AGG 0.525179 5_4:-69732993 Msa0867070:CDS
GTTAAAAGGACCTGTTTCAT+GGG 0.525575 5_4:-69729961 Msa0867070:CDS
TTTGAGCTTAGAAGCGGAGA+TGG 0.529273 5_4:+69734081 None:intergenic
ATCATAACAGGTTCAGAGGA+TGG 0.530894 5_4:-69730218 Msa0867070:CDS
AAAGATAGCGAGCGAGTGAT+GGG 0.532917 5_4:-69734298 Msa0867070:exon
AAATAGTTAGATTAGATGTA+CGG 0.537788 5_4:-69734347 Msa0867070:five_prime_UTR
TTAGAAGCGGAGATGGTGGA+AGG 0.541458 5_4:+69734088 None:intergenic
CAATTTACACTGAAGTATGT+GGG 0.542881 5_4:+69728236 None:intergenic
GATTGAGATTGAGATTGAGA+AGG 0.544014 5_4:+69734169 None:intergenic
CTATCTCCTTACATCCATCA+GGG 0.544650 5_4:-69728682 Msa0867070:CDS
TTGACAGTTGTGGTGATGAT+GGG 0.550182 5_4:-69733004 Msa0867070:intron
GGCGGATTCGAGGATGGAGA+TGG 0.554011 5_4:-69732983 Msa0867070:CDS
AGCCTGCCATGAAAAGCAAA+GGG 0.558307 5_4:-69728086 Msa0867070:three_prime_UTR
GGATTTACAACATCAAAGAC+GGG 0.559872 5_4:+69731926 None:intergenic
ATGTCAAAGCGATTGAGTAT+AGG 0.559972 5_4:+69728755 None:intergenic
TAGCCTGCCATGAAAAGCAA+AGG 0.562098 5_4:-69728087 Msa0867070:three_prime_UTR
AAGGAGATAGAAAAGGCTGA+TGG 0.563360 5_4:+69728695 None:intergenic
TTGTGATTAGAGGAATAGGA+AGG 0.570060 5_4:+69727996 None:intergenic
TCGGCATTAACAAAACCAAA+TGG 0.572784 5_4:+69733962 None:intergenic
AGGATTTACAACATCAAAGA+CGG 0.575778 5_4:+69731925 None:intergenic
AGGGAGGGAGTAAGAAGCGA+TGG 0.576885 5_4:+69734108 None:intergenic
TCATAACAGGTTCAGAGGAT+GGG 0.579441 5_4:-69730217 Msa0867070:CDS
TTGTGCATATTGTTGGGATG+CGG 0.581521 5_4:-69731279 Msa0867070:intron
TTGTCTTTCAGAGGTCCTTG+GGG 0.583505 5_4:-69731470 Msa0867070:intron
GAAGCAACGAAGAGAGATTG+AGG 0.587227 5_4:+69734142 None:intergenic
ATCTTGTTATACATTGAGCT+AGG 0.587875 5_4:+69728371 None:intergenic
AAAGGTCAAATATATGCTCT+CGG 0.588563 5_4:-69728273 Msa0867070:three_prime_UTR
GAGCACACGGTATTTGTGAA+AGG 0.590660 5_4:+69728720 None:intergenic
AAATTACGCCAACTCCGCCA+CGG 0.594357 5_4:+69728299 None:intergenic
TGGTGGCTACGGATGTCTTG+TGG 0.595306 5_4:-69728501 Msa0867070:CDS
ATGATGGGCGGATTCGAGGA+TGG 0.595758 5_4:-69732989 Msa0867070:CDS
AGATGCAAGTGAGAGCTGGT+TGG 0.596633 5_4:-69729922 Msa0867070:intron
GTGGACGTAATATATCACTT+TGG 0.597673 5_4:-69729383 Msa0867070:CDS
CTCAATCGCTTTGACATGAA+CGG 0.599077 5_4:-69728749 Msa0867070:CDS
ACAATATGCACAAGAATCAC+CGG 0.601792 5_4:+69731289 None:intergenic
ATCCTGTACAGAAGCTCGAG+TGG 0.602891 5_4:+69729326 None:intergenic
GAGATAGAAAAGGCTGATGG+AGG 0.605923 5_4:+69728698 None:intergenic
ATAGCATTATTCTCAGGGAG+AGG 0.608224 5_4:+69731437 None:intergenic
TAGAAGCGGAGATGGTGGAA+GGG 0.611252 5_4:+69734089 None:intergenic
AAGGCTGATGGAGGAGCACA+CGG 0.617050 5_4:+69728707 None:intergenic
GCAGATCATAACAGGTTCAG+AGG 0.625076 5_4:-69730222 Msa0867070:intron
GTCAGATTAGAATTCTTTAG+GGG 0.629936 5_4:+69728054 None:intergenic
ATGTGCACTCTGCAGCAGGA+AGG 0.630044 5_4:+69729358 None:intergenic
TGGATGTAAGGAGATAGAAA+AGG 0.632252 5_4:+69728688 None:intergenic
GAGCTTAGAAGCGGAGATGG+TGG 0.632261 5_4:+69734084 None:intergenic
ATGAAAATAAAATGCAAACC+AGG 0.636285 5_4:-69728182 Msa0867070:three_prime_UTR
CGGTATGTAAACACACAGGT+AGG 0.639203 5_4:-69734327 Msa0867070:five_prime_UTR
GTGAACTTAGCTAAACACAT+TGG 0.641035 5_4:+69728435 None:intergenic
GATTCGAGGATGGAGATGGA+AGG 0.643076 5_4:-69732979 Msa0867070:CDS
GGCATCGAAATGTGCACATG+TGG 0.648000 5_4:+69728456 None:intergenic
AAGACATCCGTAGCCACCAA+CGG 0.648786 5_4:+69728505 None:intergenic
ACAGTTGTGGTGATGATGGG+CGG 0.654434 5_4:-69733001 Msa0867070:intron
ACCTGTTTACACAAAGAGAG+AGG 0.662529 5_4:-69728147 Msa0867070:three_prime_UTR
GTAAACTTACTCATCCGCAT+CGG 0.667303 5_4:+69733943 None:intergenic
GATGGGACAACACGAATTTG+GGG 0.668428 5_4:-69730200 Msa0867070:intron
ACAAAGAGAGAGGAAGCCAA+AGG 0.671366 5_4:-69728137 Msa0867070:three_prime_UTR
TATCTCCTTACATCCATCAG+GGG 0.672240 5_4:-69728681 Msa0867070:intron
AGAGGTGAAAGTGAACCCCA+AGG 0.713975 5_4:+69731455 None:intergenic
TGTACGGTATGTAAACACAC+AGG 0.722539 5_4:-69734331 Msa0867070:five_prime_UTR
AAACGGTGTATCCAATACCG+TGG 0.727959 5_4:-69728316 Msa0867070:three_prime_UTR
CGGTGTATCCAATACCGTGG+CGG 0.743826 5_4:-69728313 Msa0867070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGTTAATTATTGTTATT+AGG - chr5_4:69728375-69728394 Msa0867070:three_prime_UTR 10.0%
!!! ATTGTTAATTATTGTTATTA+GGG - chr5_4:69728376-69728395 Msa0867070:three_prime_UTR 10.0%
!! GTTTATAAAAAAATCTTAAA+GGG + chr5_4:69728940-69728959 None:intergenic 10.0%
!! TGTTTATAAAAAAATCTTAA+AGG + chr5_4:69728941-69728960 None:intergenic 10.0%
!! TAAATGTTTAATATTAAATC+TGG - chr5_4:69729617-69729636 Msa0867070:intron 10.0%
!! ATATTGGTATAAAAATAAAT+AGG + chr5_4:69729792-69729811 None:intergenic 10.0%
!!! CTATTTTAAATTATTTTGTT+AGG + chr5_4:69730535-69730554 None:intergenic 10.0%
!!! CTAACAAAATAATTTAAAAT+AGG - chr5_4:69730533-69730552 Msa0867070:intron 10.0%
!! AAAAAAATTTACCTTATAAA+AGG - chr5_4:69731769-69731788 Msa0867070:intron 10.0%
!! ATTGTTTGCATAATATATAT+TGG + chr5_4:69728661-69728680 None:intergenic 15.0%
!!! ATCAGTATTTTATTTTAACT+TGG - chr5_4:69729511-69729530 Msa0867070:intron 15.0%
!! TGAAGCTTAATATTTATATT+TGG + chr5_4:69730098-69730117 None:intergenic 15.0%
!!! TGATTATTTTATTGATGAAA+TGG + chr5_4:69732688-69732707 None:intergenic 15.0%
!! TATTAATTTAATATGTGTGA+TGG - chr5_4:69733117-69733136 Msa0867070:intron 15.0%
!! AATATTAACTTCAAAAAGAA+AGG - chr5_4:69733180-69733199 Msa0867070:intron 15.0%
!! AACAATAAAAAATATGAAGA+CGG + chr5_4:69733282-69733301 None:intergenic 15.0%
!!! TAGATTTATAATTGTTGATT+TGG - chr5_4:69733913-69733932 Msa0867070:intron 15.0%
!! AAATAGTTAGATTAGATGTA+CGG - chr5_4:69727910-69727929 Msa0867070:three_prime_UTR 20.0%
!!! AATCTCTCTTTCTTTTAATA+CGG + chr5_4:69728035-69728054 None:intergenic 20.0%
!! AAATAAGTTGTTATCCAAAT+AGG - chr5_4:69728786-69728805 Msa0867070:intron 20.0%
!! AATAAGTTGTTATCCAAATA+GGG - chr5_4:69728787-69728806 Msa0867070:intron 20.0%
!!! GTTTTTACGTATTATTATAG+AGG - chr5_4:69728852-69728871 Msa0867070:intron 20.0%
!! ATAGAGGAAGATTAAAATAT+TGG - chr5_4:69728868-69728887 Msa0867070:intron 20.0%
!! AATATTCTGTTATCATAGTT+GGG + chr5_4:69728985-69729004 None:intergenic 20.0%
!! AAATATTCTGTTATCATAGT+TGG + chr5_4:69728986-69729005 None:intergenic 20.0%
!!! TTGTGTTACCATTTTTATTT+TGG - chr5_4:69729055-69729074 Msa0867070:intron 20.0%
!! TCAATTCTCCAAAATAAAAA+TGG + chr5_4:69729066-69729085 None:intergenic 20.0%
!! AACAAGCATTAATATAAATG+AGG - chr5_4:69729186-69729205 Msa0867070:intron 20.0%
!! ACAAGCATTAATATAAATGA+GGG - chr5_4:69729187-69729206 Msa0867070:intron 20.0%
!! AAGTATAATATTTCTTCAGA+AGG - chr5_4:69729315-69729334 Msa0867070:CDS 20.0%
!!! ATTTATTCATTTTCAAAGCA+TGG - chr5_4:69729571-69729590 Msa0867070:intron 20.0%
!! TTGTAATTATAGAGTTAAGA+TGG - chr5_4:69729678-69729697 Msa0867070:intron 20.0%
!! TCATGAAAAATCAATCATAT+TGG - chr5_4:69729736-69729755 Msa0867070:intron 20.0%
!! TTAAGAAAATGAAAATGAGA+TGG + chr5_4:69730004-69730023 None:intergenic 20.0%
!!! TAGTTTCTTAGTTTTTCTTT+TGG - chr5_4:69730245-69730264 Msa0867070:intron 20.0%
!! TGGAAAAATGAAAAAAAACT+CGG + chr5_4:69730442-69730461 None:intergenic 20.0%
!! AGTATACTCAGATAATATAT+AGG + chr5_4:69730469-69730488 None:intergenic 20.0%
!!! AAATAATTTAAAATAGGGCA+TGG - chr5_4:69730539-69730558 Msa0867070:intron 20.0%
!!! TTTATTTTTTACTTAACTGC+AGG - chr5_4:69730924-69730943 Msa0867070:intron 20.0%
!! TAAATTAAAAACGGTATTCA+AGG - chr5_4:69731119-69731138 Msa0867070:CDS 20.0%
!! AAATTAAAAACGGTATTCAA+GGG - chr5_4:69731120-69731139 Msa0867070:CDS 20.0%
!! TATATAAAGATGTTTCCATT+AGG + chr5_4:69731369-69731388 None:intergenic 20.0%
!! TTAATATACAAAGTTTCAAG+TGG + chr5_4:69731411-69731430 None:intergenic 20.0%
!! TTCATACTATTATATCTACT+AGG + chr5_4:69731587-69731606 None:intergenic 20.0%
!!! AAATAGTTTTTCCACAAAAA+AGG - chr5_4:69731865-69731884 Msa0867070:intron 20.0%
!!! ATTTTTTGGTGTAAATAAAC+TGG - chr5_4:69732152-69732171 Msa0867070:intron 20.0%
!! TATGTAAACCAAAAATACTA+GGG + chr5_4:69732399-69732418 None:intergenic 20.0%
!! ATATGTAAACCAAAAATACT+AGG + chr5_4:69732400-69732419 None:intergenic 20.0%
!! ATGCAGTTTATATAAAGATA+TGG - chr5_4:69732483-69732502 Msa0867070:intron 20.0%
!! TGCAGTTTATATAAAGATAT+GGG - chr5_4:69732484-69732503 Msa0867070:intron 20.0%
!!! CTTTTACTTTATTGTTCTTT+TGG - chr5_4:69732527-69732546 Msa0867070:intron 20.0%
!! ATCTAATTAAATGACAAACA+GGG + chr5_4:69733389-69733408 None:intergenic 20.0%
!! ATAAGATAGCTACAATAATA+GGG + chr5_4:69733435-69733454 None:intergenic 20.0%
!! AATAAGATAGCTACAATAAT+AGG + chr5_4:69733436-69733455 None:intergenic 20.0%
!! AAACTGTTTCCTATTAAAAA+TGG - chr5_4:69733614-69733633 Msa0867070:intron 20.0%
!! AACTGTTTCCTATTAAAAAT+GGG - chr5_4:69733615-69733634 Msa0867070:intron 20.0%
!!! TGATAATTTTTCCATTTTGT+TGG + chr5_4:69734050-69734069 None:intergenic 20.0%
! GTGAAATGATGAATTGAATA+AGG + chr5_4:69728220-69728239 None:intergenic 25.0%
!! AAGTATCCTAGTTTAGAATT+AGG + chr5_4:69728813-69728832 None:intergenic 25.0%
! ACGTAAAAACTATATGAATG+TGG + chr5_4:69728842-69728861 None:intergenic 25.0%
!! ATCAATAGTGGAATTCTAAA+TGG + chr5_4:69729019-69729038 None:intergenic 25.0%
!! ATTTAGAATTCCACTATTGA+TGG - chr5_4:69729018-69729037 Msa0867070:intron 25.0%
! TAATACTAAACACAAACCAT+TGG + chr5_4:69729126-69729145 None:intergenic 25.0%
!! ATGGTTTGTGTTTAGTATTA+TGG - chr5_4:69729126-69729145 Msa0867070:intron 25.0%
!!! GTTTAGTATTATGGTTTTGA+AGG - chr5_4:69729135-69729154 Msa0867070:intron 25.0%
! TTCAAATTAGTTCATCCATT+TGG - chr5_4:69729366-69729385 Msa0867070:CDS 25.0%
! AGAAATAAAAGAGATCCAAA+TGG + chr5_4:69729384-69729403 None:intergenic 25.0%
! AAATGAATAAATCCAAGAGT+CGG + chr5_4:69729563-69729582 None:intergenic 25.0%
! AAGTACTTGAACTGAAATAT+TGG + chr5_4:69729808-69729827 None:intergenic 25.0%
! TACAATGTACAATGTGTTAT+TGG + chr5_4:69729858-69729877 None:intergenic 25.0%
! AGGGTAAAAAATATCATGAT+AGG + chr5_4:69730146-69730165 None:intergenic 25.0%
!!! TCTTAGTTTTTCTTTTGGAT+TGG - chr5_4:69730250-69730269 Msa0867070:intron 25.0%
! ATCAATTCCTGAAACATTAA+GGG + chr5_4:69730305-69730324 None:intergenic 25.0%
! TATCAATTCCTGAAACATTA+AGG + chr5_4:69730306-69730325 None:intergenic 25.0%
! TCTATAATTACTACAGAAGT+AGG - chr5_4:69730393-69730412 Msa0867070:intron 25.0%
! CTATAATTACTACAGAAGTA+GGG - chr5_4:69730394-69730413 Msa0867070:intron 25.0%
! TATAATTACTACAGAAGTAG+GGG - chr5_4:69730395-69730414 Msa0867070:intron 25.0%
! TCAGATAATATATAGGAAAC+TGG + chr5_4:69730462-69730481 None:intergenic 25.0%
!! AAGTATGATTTTACAACTGT+TGG - chr5_4:69730590-69730609 Msa0867070:intron 25.0%
!! CTAGAAACATTAAACTTGTT+AGG + chr5_4:69731091-69731110 None:intergenic 25.0%
! CTAACAAGTTTAATGTTTCT+AGG - chr5_4:69731089-69731108 Msa0867070:CDS 25.0%
! GGAAACTGGTAAATTAAAAA+CGG - chr5_4:69731110-69731129 Msa0867070:CDS 25.0%
!! AAAAAAGGAAAGGAAGTATA+AGG + chr5_4:69731209-69731228 None:intergenic 25.0%
! ACATTAAGTCAAAAAAGGAA+AGG + chr5_4:69731219-69731238 None:intergenic 25.0%
!!! TTCCTTTTTTGACTTAATGT+TGG - chr5_4:69731219-69731238 Msa0867070:intron 25.0%
! AACCAACATTAAGTCAAAAA+AGG + chr5_4:69731224-69731243 None:intergenic 25.0%
! TGCAGTTGAGATAAAATTAA+TGG - chr5_4:69731539-69731558 Msa0867070:intron 25.0%
! ATTTACCTTATAAAAGGTCA+TGG - chr5_4:69731775-69731794 Msa0867070:intron 25.0%
!!! TAAAGTTTTCACCTTTTTTG+TGG + chr5_4:69731879-69731898 None:intergenic 25.0%
! TTTAAATTCCACTATTCTTC+TGG - chr5_4:69731913-69731932 Msa0867070:intron 25.0%
! TAACTGCTGCAAAAAAAAAA+AGG + chr5_4:69732101-69732120 None:intergenic 25.0%
!!! GCAGTAATCATACTATTTTT+TGG - chr5_4:69732138-69732157 Msa0867070:intron 25.0%
!!! TTTAACTTCAAATGTTTTGC+TGG + chr5_4:69732282-69732301 None:intergenic 25.0%
!! GCAAAACATTTGAAGTTAAA+AGG - chr5_4:69732282-69732301 Msa0867070:intron 25.0%
! ATAAAATAATCACACCTTTC+TGG - chr5_4:69732696-69732715 Msa0867070:intron 25.0%
!! ATTTCAGTTCTTTTGAACAT+TGG - chr5_4:69732997-69733016 Msa0867070:CDS 25.0%
! TAACTTCAAAAAGAAAGGAT+AGG - chr5_4:69733185-69733204 Msa0867070:intron 25.0%
! CATCTAATTAAATGACAAAC+AGG + chr5_4:69733390-69733409 None:intergenic 25.0%
! ACTGTTTCCTATTAAAAATG+GGG - chr5_4:69733616-69733635 Msa0867070:intron 25.0%
!!! ATTCTAACCCCATTTTTAAT+AGG + chr5_4:69733626-69733645 None:intergenic 25.0%
!!! TTGAGCTAGGAATATTTTTT+GGG + chr5_4:69733876-69733895 None:intergenic 25.0%
!!! ATTGAGCTAGGAATATTTTT+TGG + chr5_4:69733877-69733896 None:intergenic 25.0%
! GTAAATTGAAACCAACAAAA+TGG - chr5_4:69734036-69734055 Msa0867070:intron 25.0%
! ATGAAAATAAAATGCAAACC+AGG - chr5_4:69734075-69734094 Msa0867070:intron 25.0%
! TGTCAGATTAGAATTCTTTA+GGG + chr5_4:69734207-69734226 None:intergenic 25.0%
! ATGTCAGATTAGAATTCTTT+AGG + chr5_4:69734208-69734227 None:intergenic 25.0%
! AATATTGTGATTAGAGGAAT+AGG + chr5_4:69734268-69734287 None:intergenic 25.0%
! ATTCCTCTAATCACAATATT+TGG - chr5_4:69734268-69734287 Msa0867070:CDS 25.0%
! TTCCTCTAATCACAATATTT+GGG - chr5_4:69734269-69734288 Msa0867070:CDS 25.0%
!!! ATACAAACTCGTTCTAAAAA+GGG + chr5_4:69734311-69734330 None:intergenic 25.0%
!! AACATTTTTGAGCTTAGAAG+CGG + chr5_4:69728185-69728204 None:intergenic 30.0%
!! TTTTATTTGTTGCAGCCATT+TGG - chr5_4:69728280-69728299 Msa0867070:three_prime_UTR 30.0%
GCTTATGATGTCAAATTCTA+CGG - chr5_4:69728482-69728501 Msa0867070:CDS 30.0%
! GTAAGTTTTGCTAGATTGTT+TGG - chr5_4:69728569-69728588 Msa0867070:intron 30.0%
CAATCTTCATGCAATAATCA+GGG + chr5_4:69729437-69729456 None:intergenic 30.0%
ACAATCTTCATGCAATAATC+AGG + chr5_4:69729438-69729457 None:intergenic 30.0%
ATTAAATCTGGTAATTGCCA+AGG - chr5_4:69729629-69729648 Msa0867070:intron 30.0%
TTAAATCTGGTAATTGCCAA+GGG - chr5_4:69729630-69729649 Msa0867070:intron 30.0%
TGCAATGTACAATGTGTTAT+TGG + chr5_4:69729929-69729948 None:intergenic 30.0%
TACATTGCAAGACTCATAAA+AGG - chr5_4:69729940-69729959 Msa0867070:CDS 30.0%
!! TTGGATTGGTAATATGTTCA+AGG - chr5_4:69730264-69730283 Msa0867070:intron 30.0%
ATGATATCCCTTAATGTTTC+AGG - chr5_4:69730295-69730314 Msa0867070:intron 30.0%
AGGATTTACAACATCAAAGA+CGG + chr5_4:69730335-69730354 None:intergenic 30.0%
ATAAATAATAATGCCAGGTG+AGG + chr5_4:69730508-69730527 None:intergenic 30.0%
GTGCAATAAATAATAATGCC+AGG + chr5_4:69730513-69730532 None:intergenic 30.0%
TTCCTTTATTCCTCTATATG+TGG - chr5_4:69730731-69730750 Msa0867070:intron 30.0%
AACCACATATAGAGGAATAA+AGG + chr5_4:69730736-69730755 None:intergenic 30.0%
AATCAGAAAACCACATATAG+AGG + chr5_4:69730744-69730763 None:intergenic 30.0%
TAACGAGAGAGAAAAACATT+GGG + chr5_4:69730883-69730902 None:intergenic 30.0%
ATAACGAGAGAGAAAAACAT+TGG + chr5_4:69730884-69730903 None:intergenic 30.0%
TGATTCTTGTGCATATTGTT+GGG - chr5_4:69730972-69730991 Msa0867070:intron 30.0%
!! GTTTAATGTTTCTAGGAAAC+TGG - chr5_4:69731096-69731115 Msa0867070:CDS 30.0%
ACTGAAAATTGTTAAACCAG+AGG - chr5_4:69731248-69731267 Msa0867070:intron 30.0%
! TTTTGCATAGCTGTAAAAGT+TGG + chr5_4:69731295-69731314 None:intergenic 30.0%
AACTAAAACAATGAGCCTAA+TGG - chr5_4:69731351-69731370 Msa0867070:intron 30.0%
GTATGAAGAAAATAAGCGAA+TGG - chr5_4:69731600-69731619 Msa0867070:intron 30.0%
AAGGGGAAATGAGAAAAAAA+AGG - chr5_4:69731798-69731817 Msa0867070:intron 30.0%
AGGGGAAATGAGAAAAAAAA+GGG - chr5_4:69731799-69731818 Msa0867070:intron 30.0%
AGAAAGCAAGTTAAAATCTC+AGG + chr5_4:69732003-69732022 None:intergenic 30.0%
!!! ACTGGTTTTCTTAAATACAC+TGG - chr5_4:69732170-69732189 Msa0867070:intron 30.0%
! TATTTTCTAGATTGCAAGAG+TGG - chr5_4:69732234-69732253 Msa0867070:intron 30.0%
TTAGACATATTAGTCACTAC+TGG - chr5_4:69732448-69732467 Msa0867070:intron 30.0%
TAGACATATTAGTCACTACT+GGG - chr5_4:69732449-69732468 Msa0867070:intron 30.0%
!! TATGCATTGCTATTGGTTTA+TGG - chr5_4:69732571-69732590 Msa0867070:intron 30.0%
ACTAGATTGCATATAGATGA+AGG + chr5_4:69732751-69732770 None:intergenic 30.0%
CTTACATGCTTAGGAAATTA+TGG - chr5_4:69732777-69732796 Msa0867070:intron 30.0%
TCATAACTAATCACAGAACT+AGG + chr5_4:69732822-69732841 None:intergenic 30.0%
TCGACAATAATCAAGTTAGT+TGG - chr5_4:69732961-69732980 Msa0867070:CDS 30.0%
TTAGAATTGGGAATATTCAG+AGG + chr5_4:69733028-69733047 None:intergenic 30.0%
ACAAAGAACATTGAACGAAA+TGG + chr5_4:69733095-69733114 None:intergenic 30.0%
!! ATTTAATATGTGTGATGGAC+TGG - chr5_4:69733122-69733141 Msa0867070:intron 30.0%
! TGTTGCCTTTTATGTTTTTC+TGG - chr5_4:69733298-69733317 Msa0867070:intron 30.0%
! GTTGCCTTTTATGTTTTTCT+GGG - chr5_4:69733299-69733318 Msa0867070:intron 30.0%
! TTGCCTTTTATGTTTTTCTG+GGG - chr5_4:69733300-69733319 Msa0867070:intron 30.0%
TTACCCCAGAAAAACATAAA+AGG + chr5_4:69733306-69733325 None:intergenic 30.0%
ATATTTATGGTCAACAGAGA+AGG + chr5_4:69733345-69733364 None:intergenic 30.0%
AAATGCTTGAGCTAAATAGA+TGG + chr5_4:69733667-69733686 None:intergenic 30.0%
TCTGCCTTAGCTTATTTATT+TGG - chr5_4:69733703-69733722 Msa0867070:intron 30.0%
TGGACCAAATAAATAAGCTA+AGG + chr5_4:69733710-69733729 None:intergenic 30.0%
!!! TAGGAATATTTTTTGGGCTT+TGG + chr5_4:69733870-69733889 None:intergenic 30.0%
! ATCTTGTTATACATTGAGCT+AGG + chr5_4:69733889-69733908 None:intergenic 30.0%
!! TTGTTGATTTGGCAGTAAAA+CGG - chr5_4:69733924-69733943 Msa0867070:intron 30.0%
AAAGGTCAAATATATGCTCT+CGG - chr5_4:69733984-69734003 Msa0867070:intron 30.0%
CAATTTACACTGAAGTATGT+GGG + chr5_4:69734024-69734043 None:intergenic 30.0%
TCAATTTACACTGAAGTATG+TGG + chr5_4:69734025-69734044 None:intergenic 30.0%
TAAAATGCAAACCAGGATTA+AGG - chr5_4:69734082-69734101 Msa0867070:CDS 30.0%
GTCAGATTAGAATTCTTTAG+GGG + chr5_4:69734206-69734225 None:intergenic 30.0%
ATCCCAAATATTGTGATTAG+AGG + chr5_4:69734274-69734293 None:intergenic 30.0%
!! CATACAAACTCGTTCTAAAA+AGG + chr5_4:69734312-69734331 None:intergenic 30.0%
GATTGAGATTGAGATTGAGA+AGG + chr5_4:69728091-69728110 None:intergenic 35.0%
TCGGCATTAACAAAACCAAA+TGG + chr5_4:69728298-69728317 None:intergenic 35.0%
AAAACTTACGTCAGTAGGTA+AGG + chr5_4:69728558-69728577 None:intergenic 35.0%
! GTTTAGAATTAGGCCCTATT+TGG + chr5_4:69728803-69728822 None:intergenic 35.0%
ATAGGGCCTAATTCTAAACT+AGG - chr5_4:69728804-69728823 Msa0867070:intron 35.0%
TTTATCATCATGCTCTCCAA+TGG - chr5_4:69729107-69729126 Msa0867070:intron 35.0%
CTGTCATGATTTATGCCAAA+TGG + chr5_4:69729224-69729243 None:intergenic 35.0%
!! GTAGTTTTACTTGACAGTTG+TGG - chr5_4:69729243-69729262 Msa0867070:intron 35.0%
! TTTATATTGAGACCGACTCT+TGG - chr5_4:69729548-69729567 Msa0867070:intron 35.0%
TTTCAAAGCATGGCTAAATC+TGG - chr5_4:69729581-69729600 Msa0867070:intron 35.0%
GAACTCAACAGTAAGATGAT+AGG + chr5_4:69729982-69730001 None:intergenic 35.0%
CGTAGTTAATGTGTGCAATA+AGG - chr5_4:69730052-69730071 Msa0867070:intron 35.0%
CTTAGAAAACCAGCGAAATT+TGG + chr5_4:69730122-69730141 None:intergenic 35.0%
!!! CAAATTTCGCTGGTTTTCTA+AGG - chr5_4:69730120-69730139 Msa0867070:intron 35.0%
GGATTTACAACATCAAAGAC+GGG + chr5_4:69730334-69730353 None:intergenic 35.0%
CTAAACACTTACTTGTGTTG+AGG + chr5_4:69730355-69730374 None:intergenic 35.0%
AAAAAACTCGGAAGTCAAGA+AGG + chr5_4:69730430-69730449 None:intergenic 35.0%
TGAGTATACTCTTCTACATC+TGG - chr5_4:69730479-69730498 Msa0867070:intron 35.0%
GAGTATACTCTTCTACATCT+GGG - chr5_4:69730480-69730499 Msa0867070:intron 35.0%
TCTGAAAGACAACAGTAAGT+GGG + chr5_4:69730779-69730798 None:intergenic 35.0%
CAGCAATAGCATTATTCTCA+GGG + chr5_4:69730828-69730847 None:intergenic 35.0%
ACAGCAATAGCATTATTCTC+AGG + chr5_4:69730829-69730848 None:intergenic 35.0%
TGCTATTGCTGTAAATACTC+AGG - chr5_4:69730837-69730856 Msa0867070:intron 35.0%
!!! TTTTTTACTTAACTGCAGGC+AGG - chr5_4:69730928-69730947 Msa0867070:intron 35.0%
ACAATATGCACAAGAATCAC+CGG + chr5_4:69730971-69730990 None:intergenic 35.0%
GTGATTCTTGTGCATATTGT+TGG - chr5_4:69730971-69730990 Msa0867070:intron 35.0%
GCTAAAAATCAAGACCTGAT+TGG + chr5_4:69731187-69731206 None:intergenic 35.0%
ACCTTATAAAAGGTCATGGA+AGG - chr5_4:69731779-69731798 Msa0867070:intron 35.0%
CCTTATAAAAGGTCATGGAA+GGG - chr5_4:69731780-69731799 Msa0867070:intron 35.0%
CTTATAAAAGGTCATGGAAG+GGG - chr5_4:69731781-69731800 Msa0867070:intron 35.0%
AATTCCATCCCACATATATC+TGG + chr5_4:69731941-69731960 None:intergenic 35.0%
AGTTAAAAGGACCTGTTTCA+TGG - chr5_4:69732295-69732314 Msa0867070:intron 35.0%
GTTAAAAGGACCTGTTTCAT+GGG - chr5_4:69732296-69732315 Msa0867070:intron 35.0%
AAAATACTAGGGACGAGATA+AGG + chr5_4:69732388-69732407 None:intergenic 35.0%
! TATCTCGTCCCTAGTATTTT+TGG - chr5_4:69732388-69732407 Msa0867070:intron 35.0%
ACATATGCCACTCTAGTAAA+AGG - chr5_4:69732414-69732433 Msa0867070:intron 35.0%
! TCATGTTCCTTTTACTAGAG+TGG + chr5_4:69732424-69732443 None:intergenic 35.0%
ATGCATGTATGCATTGCTAT+TGG - chr5_4:69732564-69732583 Msa0867070:intron 35.0%
GAAGATTATACTGACCAGAA+AGG + chr5_4:69732713-69732732 None:intergenic 35.0%
AGTGAAAAGCTTACATGCTT+AGG - chr5_4:69732768-69732787 Msa0867070:intron 35.0%
GTGGACGTAATATATCACTT+TGG - chr5_4:69732874-69732893 Msa0867070:intron 35.0%
GCATGCAGCAAATTAGAATT+GGG + chr5_4:69733040-69733059 None:intergenic 35.0%
AGCATGCAGCAAATTAGAAT+TGG + chr5_4:69733041-69733060 None:intergenic 35.0%
!! TGATAACGGTGTCAGTTTAT+TGG - chr5_4:69733147-69733166 Msa0867070:intron 35.0%
! GATAACGGTGTCAGTTTATT+GGG - chr5_4:69733148-69733167 Msa0867070:intron 35.0%
AAAGATTATGTTACCCCTCT+TGG - chr5_4:69733218-69733237 Msa0867070:intron 35.0%
TACAGAATCATCATCCAAGA+GGG + chr5_4:69733235-69733254 None:intergenic 35.0%
AAAATATGAAGACGGAGCAA+GGG + chr5_4:69733274-69733293 None:intergenic 35.0%
AAAAATATGAAGACGGAGCA+AGG + chr5_4:69733275-69733294 None:intergenic 35.0%
ATGTCAAAGCGATTGAGTAT+AGG + chr5_4:69733505-69733524 None:intergenic 35.0%
TGGATGTAAGGAGATAGAAA+AGG + chr5_4:69733572-69733591 None:intergenic 35.0%
AACAAAAAACATACCCCTGA+TGG + chr5_4:69733592-69733611 None:intergenic 35.0%
! TGGGGTTAGAATCTTTGTTT+AGG - chr5_4:69733634-69733653 Msa0867070:intron 35.0%
!! TTTAGCTCAAGCATTTTGCA+TGG - chr5_4:69733671-69733690 Msa0867070:intron 35.0%
GTGAACTTAGCTAAACACAT+TGG + chr5_4:69733825-69733844 None:intergenic 35.0%
!! GAGTTGGCGTAATTTTTCAA+AGG - chr5_4:69733966-69733985 Msa0867070:intron 35.0%
TTGTGATTAGAGGAATAGGA+AGG + chr5_4:69734264-69734283 None:intergenic 35.0%
TGTACGGTATGTAAACACAC+AGG - chr5_4:69727926-69727945 Msa0867070:three_prime_UTR 40.0%
! AAACCGTTTTCAGAACTGCT+TGG - chr5_4:69728062-69728081 Msa0867070:three_prime_UTR 40.0%
! AACCGTTTTCAGAACTGCTT+GGG - chr5_4:69728063-69728082 Msa0867070:three_prime_UTR 40.0%
!!! TGGTTTTGTTAATGCCGATG+CGG - chr5_4:69728300-69728319 Msa0867070:three_prime_UTR 40.0%
GTAAACTTACTCATCCGCAT+CGG + chr5_4:69728317-69728336 None:intergenic 40.0%
TGCGCTTGAAATAAGCAATC+TGG + chr5_4:69728452-69728471 None:intergenic 40.0%
TGCTTATTTCAAGCGCATCA+TGG - chr5_4:69728455-69728474 Msa0867070:CDS 40.0%
GCTTATTTCAAGCGCATCAT+GGG - chr5_4:69728456-69728475 Msa0867070:CDS 40.0%
CTAGCAAAACTTACGTCAGT+AGG + chr5_4:69728563-69728582 None:intergenic 40.0%
!! GAAGTGTTGATCATGATGTG+AGG + chr5_4:69728753-69728772 None:intergenic 40.0%
TAGCAACTGACCATCAATAG+TGG + chr5_4:69729031-69729050 None:intergenic 40.0%
! AGGGTGTTCAGTTTACCATT+TGG - chr5_4:69729206-69729225 Msa0867070:intron 40.0%
! TTGACAGTTGTGGTGATGAT+GGG - chr5_4:69729253-69729272 Msa0867070:intron 40.0%
GAGCTAAGATTCATAGGTGT+AGG + chr5_4:69729480-69729499 None:intergenic 40.0%
CACCTATGAATCTTAGCTCA+TGG - chr5_4:69729481-69729500 Msa0867070:intron 40.0%
CTCCATGAGCTAAGATTCAT+AGG + chr5_4:69729486-69729505 None:intergenic 40.0%
AAGCTTCAACCAAATTTCGC+TGG - chr5_4:69730110-69730129 Msa0867070:intron 40.0%
! CTCTGAAAGACAACAGTAAG+TGG + chr5_4:69730780-69730799 None:intergenic 40.0%
CACTTACTGTTGTCTTTCAG+AGG - chr5_4:69730778-69730797 Msa0867070:intron 40.0%
ATAGCATTATTCTCAGGGAG+AGG + chr5_4:69730823-69730842 None:intergenic 40.0%
TTGTGCATATTGTTGGGATG+CGG - chr5_4:69730978-69730997 Msa0867070:intron 40.0%
GATGCGGTATGTATTTAGTG+AGG - chr5_4:69730994-69731013 Msa0867070:intron 40.0%
GTTAAACCAGAGGTGAAGAA+AGG - chr5_4:69731258-69731277 Msa0867070:intron 40.0%
AAGCGAATGGAGAGATAACA+CGG - chr5_4:69731613-69731632 Msa0867070:intron 40.0%
! CCCTTCCATGACCTTTTATA+AGG + chr5_4:69731783-69731802 None:intergenic 40.0%
! TTCTGGTGCCAGATATATGT+GGG - chr5_4:69731930-69731949 Msa0867070:CDS 40.0%
TGTGGGATGGAATTCTCTTA+TGG - chr5_4:69731947-69731966 Msa0867070:intron 40.0%
AACGATGTGCAGATCATAAC+AGG - chr5_4:69732027-69732046 Msa0867070:intron 40.0%
ATCATAACAGGTTCAGAGGA+TGG - chr5_4:69732039-69732058 Msa0867070:intron 40.0%
TCATAACAGGTTCAGAGGAT+GGG - chr5_4:69732040-69732059 Msa0867070:intron 40.0%
! GTTTTGCTGGATCAATCACT+TGG + chr5_4:69732269-69732288 None:intergenic 40.0%
TGGTCAGTATAATCTTCGTG+TGG - chr5_4:69732716-69732735 Msa0867070:intron 40.0%
! TTTGCTGCATGCTCTTTTTG+TGG - chr5_4:69733048-69733067 Msa0867070:intron 40.0%
! TTGCTGCATGCTCTTTTTGT+GGG - chr5_4:69733049-69733068 Msa0867070:intron 40.0%
!! GTGATGGACTGGTATGATAA+CGG - chr5_4:69733133-69733152 Msa0867070:intron 40.0%
AAAGAAAGGATAGGTGCTCT+AGG - chr5_4:69733194-69733213 Msa0867070:intron 40.0%
ACAGAATCATCATCCAAGAG+GGG + chr5_4:69733234-69733253 None:intergenic 40.0%
CTACAGAATCATCATCCAAG+AGG + chr5_4:69733236-69733255 None:intergenic 40.0%
GCATTTCAGATTCTGACAGT+TGG - chr5_4:69733472-69733491 Msa0867070:intron 40.0%
CTCAATCGCTTTGACATGAA+CGG - chr5_4:69733508-69733527 Msa0867070:intron 40.0%
AAGGAGATAGAAAAGGCTGA+TGG + chr5_4:69733565-69733584 None:intergenic 40.0%
TCTATCTCCTTACATCCATC+AGG - chr5_4:69733574-69733593 Msa0867070:intron 40.0%
CTATCTCCTTACATCCATCA+GGG - chr5_4:69733575-69733594 Msa0867070:intron 40.0%
TATCTCCTTACATCCATCAG+GGG - chr5_4:69733576-69733595 Msa0867070:intron 40.0%
GCTTGAGCTAAATAGATGGT+TGG + chr5_4:69733663-69733682 None:intergenic 40.0%
ATAACCTGAAACGAGCAGAA+TGG + chr5_4:69733730-69733749 None:intergenic 40.0%
GTGGATGTAATCTCGCAATT+TGG - chr5_4:69733775-69733794 Msa0867070:CDS 40.0%
CTCTTTGTGTAAACAGGTTC+AGG + chr5_4:69734108-69734127 None:intergenic 40.0%
ACCTGTTTACACAAAGAGAG+AGG - chr5_4:69734110-69734129 Msa0867070:CDS 40.0%
TCCTCTCTCTTTGTGTAAAC+AGG + chr5_4:69734114-69734133 None:intergenic 40.0%
TGTTGCTACAAGATAGCCTT+TGG + chr5_4:69734139-69734158 None:intergenic 40.0%
TGCTCACTACTTGTGCTTAT+TGG - chr5_4:69734332-69734351 Msa0867070:five_prime_UTR 40.0%
CGGTATGTAAACACACAGGT+AGG - chr5_4:69727930-69727949 Msa0867070:three_prime_UTR 45.0%
AAAGATAGCGAGCGAGTGAT+GGG - chr5_4:69727959-69727978 Msa0867070:three_prime_UTR 45.0%
!! CGAGTGATGGGTACAATGTT+TGG - chr5_4:69727971-69727990 Msa0867070:three_prime_UTR 45.0%
!! AGCCCAAGCAGTTCTGAAAA+CGG + chr5_4:69728068-69728087 None:intergenic 45.0%
GAAGCAACGAAGAGAGATTG+AGG + chr5_4:69728118-69728137 None:intergenic 45.0%
TTTGAGCTTAGAAGCGGAGA+TGG + chr5_4:69728179-69728198 None:intergenic 45.0%
ACGAAAATGCTCTCTTGCTC+AGG - chr5_4:69728510-69728529 Msa0867070:CDS 45.0%
! CTTGACAGTTGTGGTGATGA+TGG - chr5_4:69729252-69729271 Msa0867070:intron 45.0%
GCACAATTCTCATTGACCCT+TGG + chr5_4:69729649-69729668 None:intergenic 45.0%
ACAATCAAGCAGTGAGCGTA+TGG + chr5_4:69730172-69730191 None:intergenic 45.0%
GAAGAATCCCTTTCTCTGAC+AGG + chr5_4:69730658-69730677 None:intergenic 45.0%
AAGGGATTCTTCACACGATC+TGG - chr5_4:69730666-69730685 Msa0867070:intron 45.0%
AGGGATTCTTCACACGATCT+GGG - chr5_4:69730667-69730686 Msa0867070:intron 45.0%
TGTTGTCTTTCAGAGGTCCT+TGG - chr5_4:69730785-69730804 Msa0867070:intron 45.0%
GTTGTCTTTCAGAGGTCCTT+GGG - chr5_4:69730786-69730805 Msa0867070:intron 45.0%
TTGTCTTTCAGAGGTCCTTG+GGG - chr5_4:69730787-69730806 Msa0867070:intron 45.0%
CAAGTTCCTTTCTTCACCTC+TGG + chr5_4:69731267-69731286 None:intergenic 45.0%
ATCTGGCACCAGAAGAATAG+TGG + chr5_4:69731924-69731943 None:intergenic 45.0%
! CTTCTGGTGCCAGATATATG+TGG - chr5_4:69731929-69731948 Msa0867070:CDS 45.0%
GCAGATCATAACAGGTTCAG+AGG - chr5_4:69732035-69732054 Msa0867070:intron 45.0%
AGGATGGGACAACACGAATT+TGG - chr5_4:69732055-69732074 Msa0867070:intron 45.0%
GGATGGGACAACACGAATTT+GGG - chr5_4:69732056-69732075 Msa0867070:intron 45.0%
GATGGGACAACACGAATTTG+GGG - chr5_4:69732057-69732076 Msa0867070:intron 45.0%
AAAGGACCTGTTTCATGGGT+TGG - chr5_4:69732300-69732319 Msa0867070:intron 45.0%
CTTTAGATGCAAGTGAGAGC+TGG - chr5_4:69732331-69732350 Msa0867070:intron 45.0%
GTCACTACTGGGTGAATCTA+CGG - chr5_4:69732460-69732479 Msa0867070:intron 45.0%
CACCATTGCCAATGTTCTAC+AGG - chr5_4:69732842-69732861 Msa0867070:intron 45.0%
AGCCTGTAGAACATTGGCAA+TGG + chr5_4:69732847-69732866 None:intergenic 45.0%
ACTGCAAGCCTGTAGAACAT+TGG + chr5_4:69732853-69732872 None:intergenic 45.0%
TTTAATGTGCACTCTGCAGC+AGG + chr5_4:69732906-69732925 None:intergenic 45.0%
! TGCTGCATGCTCTTTTTGTG+GGG - chr5_4:69733050-69733069 Msa0867070:intron 45.0%
GAGCACACGGTATTTGTGAA+AGG + chr5_4:69733540-69733559 None:intergenic 45.0%
GAGATAGAAAAGGCTGATGG+AGG + chr5_4:69733562-69733581 None:intergenic 45.0%
! ACATACCCCTGATGGATGTA+AGG + chr5_4:69733584-69733603 None:intergenic 45.0%
!! TCGTTTCAGGTTATTGCCGT+TGG - chr5_4:69733736-69733755 Msa0867070:intron 45.0%
!! TTTCAGGTTATTGCCGTTGG+TGG - chr5_4:69733739-69733758 Msa0867070:intron 45.0%
AAACGGTGTATCCAATACCG+TGG - chr5_4:69733941-69733960 Msa0867070:intron 45.0%
CACTGAAGTATGTGGGTTTG+AGG + chr5_4:69734017-69734036 None:intergenic 45.0%
ACAAAGAGAGAGGAAGCCAA+AGG - chr5_4:69734120-69734139 Msa0867070:CDS 45.0%
TAGCCTGCCATGAAAAGCAA+AGG - chr5_4:69734170-69734189 Msa0867070:CDS 45.0%
AGCCTGCCATGAAAAGCAAA+GGG - chr5_4:69734171-69734190 Msa0867070:CDS 45.0%
!!! TAACAAAATAATTTAAAATA+GGG - chr5_4:69730534-69730553 Msa0867070:intron 5.0%
!!! GTTTATTTTAAAAATAATAA+TGG - chr5_4:69731664-69731683 Msa0867070:intron 5.0%
!! TAAAAATATTGAAATATTTA+TGG + chr5_4:69733358-69733377 None:intergenic 5.0%
GAAAGATAGCGAGCGAGTGA+TGG - chr5_4:69727958-69727977 Msa0867070:three_prime_UTR 50.0%
!! TGTTTGGTGACGCCACAAAC+TGG - chr5_4:69727987-69728006 Msa0867070:three_prime_UTR 50.0%
CGCATCTTCGTTCCAGTTTG+TGG + chr5_4:69728002-69728021 None:intergenic 50.0%
CTCTTCGTTGCTTCCAGTGA+TGG - chr5_4:69728124-69728143 Msa0867070:three_prime_UTR 50.0%
AGAAGCGATGGAACCATCAC+TGG + chr5_4:69728140-69728159 None:intergenic 50.0%
!! TAGAAGCGGAGATGGTGGAA+GGG + chr5_4:69728171-69728190 None:intergenic 50.0%
!! TTAGAAGCGGAGATGGTGGA+AGG + chr5_4:69728172-69728191 None:intergenic 50.0%
!! ACAGTTGTGGTGATGATGGG+CGG - chr5_4:69729256-69729275 Msa0867070:intron 50.0%
GATTCGAGGATGGAGATGGA+AGG - chr5_4:69729278-69729297 Msa0867070:intron 50.0%
AGCAGTGAGCGTATGGTAGA+GGG + chr5_4:69730165-69730184 None:intergenic 50.0%
AAGCAGTGAGCGTATGGTAG+AGG + chr5_4:69730166-69730185 None:intergenic 50.0%
TCTCTGACAGGTCTCGAGTT+AGG + chr5_4:69730646-69730665 None:intergenic 50.0%
ACTCGAGACCTGTCAGAGAA+AGG - chr5_4:69730647-69730666 Msa0867070:intron 50.0%
CTCGAGACCTGTCAGAGAAA+GGG - chr5_4:69730648-69730667 Msa0867070:intron 50.0%
AGAGGTGAAAGTGAACCCCA+AGG + chr5_4:69730805-69730824 None:intergenic 50.0%
TGTTAGGCCAGCATCAACAG+AGG + chr5_4:69731075-69731094 None:intergenic 50.0%
TGCTCGCAACTCATCCAATC+AGG - chr5_4:69731170-69731189 Msa0867070:intron 50.0%
GGTGCCAGATATATGTGGGA+TGG - chr5_4:69731934-69731953 Msa0867070:CDS 50.0%
TCAGGCAACACGTTGTGTGT+GGG + chr5_4:69731985-69732004 None:intergenic 50.0%
ACAGAGCCAACCCATGAAAC+AGG + chr5_4:69732309-69732328 None:intergenic 50.0%
AGATGCAAGTGAGAGCTGGT+TGG - chr5_4:69732335-69732354 Msa0867070:intron 50.0%
GTTCTACAGGCTTGCAGTAG+TGG - chr5_4:69732855-69732874 Msa0867070:intron 50.0%
TTCCACTCGAGCTTCTGTAC+AGG - chr5_4:69732929-69732948 Msa0867070:intron 50.0%
ATCCTGTACAGAAGCTCGAG+TGG + chr5_4:69732934-69732953 None:intergenic 50.0%
! GCTGCATGCTCTTTTTGTGG+GGG - chr5_4:69733051-69733070 Msa0867070:intron 50.0%
! CATGCTCTTTTTGTGGGGGA+GGG - chr5_4:69733055-69733074 Msa0867070:intron 50.0%
TGGTCCATTCTGCTCGTTTC+AGG - chr5_4:69733723-69733742 Msa0867070:intron 50.0%
!! GTTATTGCCGTTGGTGGCTA+CGG - chr5_4:69733745-69733764 Msa0867070:intron 50.0%
AAGACATCCGTAGCCACCAA+CGG + chr5_4:69733755-69733774 None:intergenic 50.0%
! GGCATCGAAATGTGCACATG+TGG + chr5_4:69733804-69733823 None:intergenic 50.0%
AAATTACGCCAACTCCGCCA+CGG + chr5_4:69733961-69733980 None:intergenic 50.0%
ACAGGTTCAGGCCTTAATCC+TGG + chr5_4:69734096-69734115 None:intergenic 50.0%
!! AGCCCTTTGCTTTTCATGGC+AGG + chr5_4:69734176-69734195 None:intergenic 50.0%
!! GTGCAGCCCTTTGCTTTTCA+TGG + chr5_4:69734180-69734199 None:intergenic 50.0%
AGGGAGGGAGTAAGAAGCGA+TGG + chr5_4:69728152-69728171 None:intergenic 55.0%
GAGCTTAGAAGCGGAGATGG+TGG + chr5_4:69728176-69728195 None:intergenic 55.0%
!! ATGATGGGCGGATTCGAGGA+TGG - chr5_4:69729268-69729287 Msa0867070:intron 55.0%
CTACATCTGGGTTCCTCACC+TGG - chr5_4:69730492-69730511 Msa0867070:intron 55.0%
! GGATCTGTTTTCGCTGCGTC+CGG - chr5_4:69730949-69730968 Msa0867070:intron 55.0%
AGTCGCACCTCTGTTGATGC+TGG - chr5_4:69731065-69731084 Msa0867070:intron 55.0%
CTCAGGCAACACGTTGTGTG+TGG + chr5_4:69731986-69732005 None:intergenic 55.0%
ATGTGCACTCTGCAGCAGGA+AGG + chr5_4:69732902-69732921 None:intergenic 55.0%
! GCATGCTCTTTTTGTGGGGG+AGG - chr5_4:69733054-69733073 Msa0867070:intron 55.0%
! CTCTTTTTGTGGGGGAGGGA+GGG - chr5_4:69733059-69733078 Msa0867070:intron 55.0%
! TCTTTTTGTGGGGGAGGGAG+GGG - chr5_4:69733060-69733079 Msa0867070:intron 55.0%
! AAGGCTGATGGAGGAGCACA+CGG + chr5_4:69733553-69733572 None:intergenic 55.0%
TGGTGGCTACGGATGTCTTG+TGG - chr5_4:69733756-69733775 Msa0867070:CDS 55.0%
CGGTGTATCCAATACCGTGG+CGG - chr5_4:69733944-69733963 Msa0867070:intron 55.0%
! ATCCAATACCGTGGCGGAGT+TGG - chr5_4:69733950-69733969 Msa0867070:intron 55.0%
!! AGCGGAGATGGTGGAAGGGA+GGG + chr5_4:69728167-69728186 None:intergenic 60.0%
!! AAGCGGAGATGGTGGAAGGG+AGG + chr5_4:69728168-69728187 None:intergenic 60.0%
!! GGTGATGATGGGCGGATTCG+AGG - chr5_4:69729264-69729283 Msa0867070:intron 60.0%
! GGCGGATTCGAGGATGGAGA+TGG - chr5_4:69729274-69729293 Msa0867070:intron 60.0%
! GCTCTTTTTGTGGGGGAGGG+AGG - chr5_4:69733058-69733077 Msa0867070:intron 60.0%
CGCCAACTCCGCCACGGTAT+TGG + chr5_4:69733955-69733974 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 69727909 69734370 69727909 ID=Msa0867070;Name=Msa0867070
chr5_4 mRNA 69727909 69734370 69727909 ID=Msa0867070-mRNA-1;Parent=Msa0867070;Name=Msa0867070-mRNA-1;_AED=0.13;_eAED=0.13;_QI=68|1|1|1|1|1|13|536|380
chr5_4 exon 69727909 69728534 69727909 ID=Msa0867070-mRNA-1:exon:21900;Parent=Msa0867070-mRNA-1
chr5_4 exon 69728682 69728798 69728682 ID=Msa0867070-mRNA-1:exon:21899;Parent=Msa0867070-mRNA-1
chr5_4 exon 69729305 69729415 69729305 ID=Msa0867070-mRNA-1:exon:21898;Parent=Msa0867070-mRNA-1
chr5_4 exon 69729923 69730035 69729923 ID=Msa0867070-mRNA-1:exon:21897;Parent=Msa0867070-mRNA-1
chr5_4 exon 69730201 69730240 69730201 ID=Msa0867070-mRNA-1:exon:21896;Parent=Msa0867070-mRNA-1
chr5_4 exon 69731088 69731168 69731088 ID=Msa0867070-mRNA-1:exon:21895;Parent=Msa0867070-mRNA-1
chr5_4 exon 69731280 69731333 69731280 ID=Msa0867070-mRNA-1:exon:21894;Parent=Msa0867070-mRNA-1
chr5_4 exon 69731421 69731481 69731421 ID=Msa0867070-mRNA-1:exon:21893;Parent=Msa0867070-mRNA-1
chr5_4 exon 69731917 69731962 69731917 ID=Msa0867070-mRNA-1:exon:21892;Parent=Msa0867070-mRNA-1
chr5_4 exon 69732943 69733019 69732943 ID=Msa0867070-mRNA-1:exon:21891;Parent=Msa0867070-mRNA-1
chr5_4 exon 69733748 69733843 69733748 ID=Msa0867070-mRNA-1:exon:21890;Parent=Msa0867070-mRNA-1
chr5_4 exon 69733953 69733984 69733953 ID=Msa0867070-mRNA-1:exon:21889;Parent=Msa0867070-mRNA-1
chr5_4 exon 69734078 69734370 69734078 ID=Msa0867070-mRNA-1:exon:21888;Parent=Msa0867070-mRNA-1
chr5_4 five_prime_UTR 69734303 69734370 69734303 ID=Msa0867070-mRNA-1:five_prime_utr;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69734078 69734302 69734078 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69733953 69733984 69733953 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69733748 69733843 69733748 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69732943 69733019 69732943 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69731917 69731962 69731917 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69731421 69731481 69731421 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69731280 69731333 69731280 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69731088 69731168 69731088 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69730201 69730240 69730201 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69729923 69730035 69729923 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69729305 69729415 69729305 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69728682 69728798 69728682 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 CDS 69728445 69728534 69728445 ID=Msa0867070-mRNA-1:cds;Parent=Msa0867070-mRNA-1
chr5_4 three_prime_UTR 69727909 69728444 69727909 ID=Msa0867070-mRNA-1:three_prime_utr;Parent=Msa0867070-mRNA-1
Gene Sequence

>Msa0867070

ATGGGTACAATGTTTGGTGACGCCACAAACTGGAACGAAGATGCGTACAAAGAATCCGTATTAAAAGAAAGAGAGATTCAAACTCAAACCGTTTTCAGAACTGCTTGGGCTCCTTCTCAATCTCAATCTCAATCTCAACCTCAATCTCTCTTCGTTGCTTCCAGTGATGGTTCCATCGCTTCTTACTCCCTCCCTTCCACCATCTCCGCTTCTAAGCTCAAAAATCCATTTGGTTTTGTTAATGCCGATGCGGATGATTTATTAGCTGAGCCAGATTGCTTATTTCAAGCGCATCATGGGTCTGCTTATGATGTCAAATTCTACGGTCATGACGAAAATGCTCTCTTGCTCAGTTGTGGTGATGATGGGCGGATTCGAGGATGGAGATGGAAGGAACTTACAAACTTCAAGTATAATATTTCTTCAGAAGGAATTGATATCAAGCCCGTCTTTGATGTTGTAAATCCTCAACACAAAGGTCCTTGGGGTTCACTTTCACCTCTCCCTGAGAATAATGCTATTGCTGTAAATACTCAGGCAGGATCTGTTTTCGCTGCGTCCGGTGATTCTTGTGCATATTGTTGGGATGCGGAAACTGGTAAATTAAAAACGGTATTCAAGGGACACTCTGATTACTTGCATTGTATTGTTGCTCGCAACTCATCCAATCAGATCATAACAGGTTCAGAGGATGGGACAACACGAATTTGGGATTGCAAGAGTGGAAAGTGTATCCAAGTGATTGATCCAGCAAAACATTTGAAGTTAAAAGGACCTGTTTCATGGGTTGGCTCTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTGCAGAGTGCACATTAAATTTTTCCACTCGAGCTTCTGTACAGGATCTGTTATTCGACAATAATCAAATTCTGACAGTTGGTGCAGATCCTATACTCAATCGCTTTGACATGAACGGTGCGATCCTTTCACAAATACCGTGTGCTCCTCCATCAGCCTTTTCTATCTCCTTACATCCATCAGGGGTTATTGCCGTTGGTGGCTACGGATGTCTTGTGGATGTAATCTCGCAATTTGGCAGCCACATGTGCACATTTCGATGCCAATGTGTTTAG

Protein sequence

>Msa0867070

MGTMFGDATNWNEDAYKESVLKEREIQTQTVFRTAWAPSQSQSQSQPQSLFVASSDGSIASYSLPSTISASKLKNPFGFVNADADDLLAEPDCLFQAHHGSAYDVKFYGHDENALLLSCGDDGRIRGWRWKELTNFKYNISSEGIDIKPVFDVVNPQHKGPWGSLSPLPENNAIAVNTQAGSVFAASGDSCAYCWDAETGKLKTVFKGHSDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCIQVIDPAKHLKLKGPVSWVGSVALDASESWLACSSGRNISLWNLPAAECTLNFSTRASVQDLLFDNNQILTVGADPILNRFDMNGAILSQIPCAPPSAFSISLHPSGVIAVGGYGCLVDVISQFGSHMCTFRCQCV*