Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272380 | MCH92009.1 | 85.938 | 64 | 9 | 0 | 7 | 70 | 1 | 64 | 1.88e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272380 | sp|Q39173|P2_ARATH | 79.688 | 64 | 13 | 0 | 7 | 70 | 136 | 199 | 7.77e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272380 | A0A392MYL4 | 85.938 | 64 | 9 | 0 | 7 | 70 | 1 | 64 | 8.99e-30 | 110 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030030 | Msa1272380 | 0.804479 | 2.117793e-49 | -8.615850e-47 |
| Msa0051100 | Msa1272380 | 0.810000 | 1.432840e-50 | -8.615850e-47 |
| Msa0203180 | Msa1272380 | 0.802858 | 4.596453e-49 | -8.615850e-47 |
| Msa1272380 | Msa1287160 | 0.803610 | 3.211438e-49 | -8.615850e-47 |
| Msa1272380 | Msa1357720 | 0.810462 | 1.138883e-50 | -8.615850e-47 |
| Msa1272380 | Msa1405470 | 0.809772 | 1.604283e-50 | -8.615850e-47 |
| Msa1272380 | Msa1428440 | 0.816595 | 5.100869e-52 | -8.615850e-47 |
| Msa0243470 | Msa1272380 | 0.803608 | 3.213872e-49 | -8.615850e-47 |
| Msa0323630 | Msa1272380 | 0.809471 | 1.861628e-50 | -8.615850e-47 |
| Msa1152280 | Msa1272380 | 0.803194 | 3.916056e-49 | -8.615850e-47 |
| Msa0887070 | Msa1272380 | 0.815854 | 7.469434e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272380 | MtrunA17_Chr8g0335881 | 85.938 | 64 | 9 | 0 | 7 | 70 | 136 | 199 | 4.08e-32 | 110 |
| Msa1272380 | MtrunA17_Chr8g0337491 | 85.938 | 64 | 9 | 0 | 7 | 70 | 148 | 211 | 2.12e-31 | 112 |
| Msa1272380 | MtrunA17_Chr8g0337481 | 84.375 | 64 | 10 | 0 | 7 | 70 | 78 | 141 | 6.84e-31 | 108 |
| Msa1272380 | MtrunA17_Chr8g0337361 | 85.938 | 64 | 9 | 0 | 7 | 70 | 195 | 258 | 1.12e-30 | 110 |
| Msa1272380 | MtrunA17_Chr8g0337371 | 81.250 | 64 | 12 | 0 | 7 | 70 | 630 | 693 | 3.27e-30 | 110 |
| Msa1272380 | MtrunA17_Chr8g0337371 | 75.000 | 64 | 16 | 0 | 7 | 70 | 183 | 246 | 8.37e-27 | 100 |
| Msa1272380 | MtrunA17_Chr8g0337471 | 82.812 | 64 | 11 | 0 | 7 | 70 | 137 | 200 | 3.25e-29 | 105 |
| Msa1272380 | MtrunA17_Chr8g0337451 | 82.812 | 64 | 11 | 0 | 7 | 70 | 137 | 200 | 3.69e-29 | 105 |
| Msa1272380 | MtrunA17_Chr7g0214831 | 85.714 | 56 | 8 | 0 | 7 | 62 | 139 | 194 | 2.58e-26 | 97.8 |
| Msa1272380 | MtrunA17_Chr4g0043061 | 82.456 | 57 | 10 | 0 | 6 | 62 | 142 | 198 | 2.98e-25 | 95.1 |
| Msa1272380 | MtrunA17_Chr2g0307121 | 68.519 | 54 | 17 | 0 | 9 | 62 | 141 | 194 | 2.18e-20 | 82.0 |
| Msa1272380 | MtrunA17_Chr2g0322531 | 46.269 | 67 | 36 | 0 | 4 | 70 | 138 | 204 | 3.31e-14 | 65.1 |
| Msa1272380 | MtrunA17_Chr2g0322541 | 48.387 | 62 | 32 | 0 | 9 | 70 | 144 | 205 | 2.20e-13 | 62.8 |
| Msa1272380 | MtrunA17_Chr2g0322551 | 46.269 | 67 | 36 | 0 | 4 | 70 | 139 | 205 | 4.81e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272380 | AT1G26320.1 | 82.812 | 64 | 11 | 0 | 7 | 70 | 144 | 207 | 8.65e-29 | 105 |
| Msa1272380 | AT1G26320.2 | 92.727 | 55 | 4 | 0 | 7 | 61 | 144 | 198 | 5.09e-28 | 102 |
| Msa1272380 | AT5G16990.1 | 79.688 | 64 | 13 | 0 | 7 | 70 | 136 | 199 | 7.90e-28 | 102 |
| Msa1272380 | AT5G16980.1 | 76.562 | 64 | 15 | 0 | 7 | 70 | 32 | 95 | 1.35e-27 | 99.8 |
| Msa1272380 | AT5G16980.3 | 76.562 | 64 | 15 | 0 | 7 | 70 | 32 | 95 | 1.35e-27 | 99.8 |
| Msa1272380 | AT5G16980.2 | 76.562 | 64 | 15 | 0 | 7 | 70 | 98 | 161 | 1.97e-27 | 100 |
| Msa1272380 | AT5G17000.2 | 76.562 | 64 | 15 | 0 | 7 | 70 | 138 | 201 | 3.27e-27 | 99.0 |
| Msa1272380 | AT3G03080.1 | 78.125 | 64 | 14 | 0 | 7 | 70 | 143 | 206 | 3.55e-27 | 100 |
| Msa1272380 | AT5G16960.2 | 76.562 | 64 | 15 | 0 | 7 | 70 | 139 | 202 | 5.45e-27 | 100 |
| Msa1272380 | AT5G16960.1 | 76.562 | 64 | 15 | 0 | 7 | 70 | 139 | 202 | 5.45e-27 | 100 |
| Msa1272380 | AT3G59845.2 | 83.929 | 56 | 9 | 0 | 7 | 62 | 39 | 94 | 8.98e-27 | 97.8 |
| Msa1272380 | AT3G59845.1 | 83.929 | 56 | 9 | 0 | 7 | 62 | 141 | 196 | 1.14e-26 | 99.4 |
| Msa1272380 | AT5G16970.1 | 76.562 | 64 | 15 | 0 | 7 | 70 | 138 | 201 | 1.25e-26 | 99.0 |
| Msa1272380 | AT5G17000.1 | 76.562 | 64 | 15 | 0 | 7 | 70 | 138 | 201 | 2.49e-26 | 98.2 |
| Msa1272380 | AT5G37940.1 | 73.438 | 64 | 17 | 0 | 7 | 70 | 146 | 209 | 9.57e-26 | 97.1 |
| Msa1272380 | AT5G37980.1 | 73.438 | 64 | 17 | 0 | 7 | 70 | 146 | 209 | 1.05e-25 | 96.7 |
| Msa1272380 | AT5G38000.1 | 71.875 | 64 | 18 | 0 | 7 | 70 | 146 | 209 | 6.71e-25 | 94.7 |
| Msa1272380 | AT5G38000.3 | 71.875 | 64 | 18 | 0 | 7 | 70 | 146 | 209 | 7.21e-25 | 94.7 |
| Msa1272380 | AT1G65560.2 | 76.786 | 56 | 13 | 0 | 7 | 62 | 66 | 121 | 1.69e-23 | 89.7 |
| Msa1272380 | AT1G65560.1 | 76.786 | 56 | 13 | 0 | 7 | 62 | 142 | 197 | 2.60e-23 | 90.5 |
| Msa1272380 | AT5G38000.2 | 73.913 | 46 | 12 | 0 | 25 | 70 | 145 | 190 | 1.51e-14 | 66.2 |
Find 19 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCATGCAATTTGGCAAAT+TGG | 0.212138 | 8_3:-5999920 | None:intergenic |
| CTTGTGCATGGAGCACTCTT+TGG | 0.275860 | 8_3:+6001098 | Msa1272380:CDS |
| AAAACTGTCTCTCCTTTCTT+AGG | 0.278383 | 8_3:-5999858 | None:intergenic |
| AACATAGCAACCATGCAATT+TGG | 0.315125 | 8_3:-5999928 | None:intergenic |
| GGTGCTGTTGGTCAACTTGT+TGG | 0.364308 | 8_3:+5999897 | Msa1272380:CDS |
| TGCTATGTTGTTGGAAGTGC+TGG | 0.374726 | 8_3:+5999942 | Msa1272380:CDS |
| CCAGCATAAGCGGTCATTCC+CGG | 0.378844 | 8_3:-5999816 | None:intergenic |
| TCATCTGCCTCTGGTGCTGT+TGG | 0.469392 | 8_3:+5999885 | Msa1272380:CDS |
| TATGCTGGTTTCTTTGAAGT+AGG | 0.475286 | 8_3:+5999831 | Msa1272380:CDS |
| TTGCATGGTTGCTATGTTGT+TGG | 0.478375 | 8_3:+5999933 | Msa1272380:CDS |
| TTGTTTGAGTACAGGTATGC+CGG | 0.481096 | 8_3:+5999797 | Msa1272380:intron |
| TGTGTTTAGTTACTTGTGCA+TGG | 0.483214 | 8_3:+6001086 | Msa1272380:intron |
| CCGGGAATGACCGCTTATGC+TGG | 0.510001 | 8_3:+5999816 | Msa1272380:CDS |
| GAAGTAGGCTCTCCTAAGAA+AGG | 0.539150 | 8_3:+5999846 | Msa1272380:CDS |
| TTCAAAGAAACCAGCATAAG+CGG | 0.566265 | 8_3:-5999826 | None:intergenic |
| TGTTTGAGTACAGGTATGCC+GGG | 0.570748 | 8_3:+5999798 | Msa1272380:intron |
| GGCCAATTTGCCAAATTGCA+TGG | 0.571871 | 8_3:+5999918 | Msa1272380:CDS |
| AAGTGCTGGAAGTAAAGAGA+AGG | 0.616160 | 8_3:+5999956 | Msa1272380:CDS |
| AAGTTGACCAACAGCACCAG+AGG | 0.637825 | 8_3:-5999892 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATGTATAAAATTTACTT+TGG | + | chr8_3:5998681-5998700 | Msa1272380:intron | 10.0% |
| !! | TTATGTATAAAATTTACTTT+GGG | + | chr8_3:5998682-5998701 | Msa1272380:intron | 10.0% |
| !! | AATTGAATTTAACATTTCAA+AGG | + | chr8_3:5998635-5998654 | Msa1272380:intron | 15.0% |
| !!! | ATACTTTGTCTTTTAAAATT+AGG | - | chr8_3:5998661-5998680 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGTTTGTAAACT+TGG | - | chr8_3:5998953-5998972 | None:intergenic | 15.0% |
| !! | TATTCATTTAGTATAATTAC+AGG | - | chr8_3:6000222-6000241 | None:intergenic | 15.0% |
| !!! | GATTTGTTGAAAAATAAATT+TGG | + | chr8_3:6000262-6000281 | Msa1272380:intron | 15.0% |
| !! | AATATCAAGGCTATAAATAA+TGG | + | chr8_3:5999242-5999261 | Msa1272380:intron | 20.0% |
| !! | AAAGTTAGTTATAATGTGTA+TGG | - | chr8_3:5999395-5999414 | None:intergenic | 20.0% |
| !! | CATTATAGTTACTTAGTTTA+TGG | - | chr8_3:5999437-5999456 | None:intergenic | 20.0% |
| !! | AAGTAACTATAATGAAGTTA+TGG | + | chr8_3:5999443-5999462 | Msa1272380:intron | 20.0% |
| !! | AAATCATCTTTCTTATAATC+TGG | - | chr8_3:5999580-5999599 | None:intergenic | 20.0% |
| !! | ATAAGAAAGATGATTTAGTT+TGG | + | chr8_3:5999584-5999603 | Msa1272380:intron | 20.0% |
| !!! | TAAGAAAGATGATTTAGTTT+GGG | + | chr8_3:5999585-5999604 | Msa1272380:intron | 20.0% |
| !! | ACATTTGATTAATCATTCTA+CGG | + | chr8_3:6000051-6000070 | Msa1272380:intron | 20.0% |
| !!! | CTATTTTAAATTTTGGAAAC+CGG | + | chr8_3:6000176-6000195 | Msa1272380:intron | 20.0% |
| !! | TTAGTATAATTACAGGATAA+TGG | - | chr8_3:6000215-6000234 | None:intergenic | 20.0% |
| !! | CATACACACAAATAATAATT+TGG | - | chr8_3:6000533-6000552 | None:intergenic | 20.0% |
| !! | ATTATTATTTGTGTGTATGT+AGG | + | chr8_3:6000534-6000553 | Msa1272380:intron | 20.0% |
| !! | TCATCTTTATACAAAATTCT+TGG | + | chr8_3:6000852-6000871 | Msa1272380:intron | 20.0% |
| !!! | TTGTTGTTGCTTTTGAAATT+AGG | + | chr8_3:5998595-5998614 | Msa1272380:intron | 25.0% |
| ! | TGTAATCTGTTTAGAGAAAA+TGG | - | chr8_3:5998999-5999018 | None:intergenic | 25.0% |
| ! | ATTATTTAATGACCCAAGAA+AGG | + | chr8_3:5999084-5999103 | Msa1272380:intron | 25.0% |
| ! | ATCATAATCTTTACCTACTT+GGG | - | chr8_3:5999128-5999147 | None:intergenic | 25.0% |
| ! | AGTTGCATTAGATAATATAG+AGG | + | chr8_3:5999153-5999172 | Msa1272380:intron | 25.0% |
| !! | AAGGAGAAATTACTCTAAAA+AGG | - | chr8_3:5999346-5999365 | None:intergenic | 25.0% |
| !!! | AAGAAAGATGATTTAGTTTG+GGG | + | chr8_3:5999586-5999605 | Msa1272380:intron | 25.0% |
| ! | TGTTAATTCATCATTTATGC+AGG | - | chr8_3:6000028-6000047 | None:intergenic | 25.0% |
| ! | TAATGGTTGTAATTATGTAC+CGG | - | chr8_3:6000198-6000217 | None:intergenic | 25.0% |
| ! | TTTCTCTTCTTTGTAGTTAA+AGG | - | chr8_3:6000299-6000318 | None:intergenic | 25.0% |
| ! | CTTCATAGATAGTTATTACT+TGG | + | chr8_3:6000570-6000589 | Msa1272380:intron | 25.0% |
| !! | ATATCATATATAAGCGGATT+CGG | + | chr8_3:6000800-6000819 | Msa1272380:intron | 25.0% |
| ! | CATTCATGAATAGTTTGTCT+TGG | + | chr8_3:5998560-5998579 | Msa1272380:intron | 30.0% |
| !! | TAGTTTGTCTTGGATTTTGA+AGG | + | chr8_3:5998570-5998589 | Msa1272380:intron | 30.0% |
| !!! | TTGCTTTTGAAATTAGGAAG+TGG | + | chr8_3:5998601-5998620 | Msa1272380:intron | 30.0% |
| !!! | TGCTTTTGAAATTAGGAAGT+GGG | + | chr8_3:5998602-5998621 | Msa1272380:intron | 30.0% |
| GCAATAATGTTTGATTAGTG+TGG | - | chr8_3:5998742-5998761 | None:intergenic | 30.0% | |
| TTGTTTGTAAACTTGGTATC+CGG | - | chr8_3:5998946-5998965 | None:intergenic | 30.0% | |
| TATTATCTTGAGCCTTTCTT+GGG | - | chr8_3:5999099-5999118 | None:intergenic | 30.0% | |
| CATCATAATCTTTACCTACT+TGG | - | chr8_3:5999129-5999148 | None:intergenic | 30.0% | |
| GTGAAGTTGTTAGAATATCA+AGG | + | chr8_3:5999229-5999248 | Msa1272380:intron | 30.0% | |
| ! | TAAATGGGAAGAGTATAGTT+TGG | + | chr8_3:5999615-5999634 | Msa1272380:intron | 30.0% |
| !! | TGAAAAGTATTTCAGTTGCA+GGG | - | chr8_3:5999642-5999661 | None:intergenic | 30.0% |
| !! | TTGAAAAGTATTTCAGTTGC+AGG | - | chr8_3:5999643-5999662 | None:intergenic | 30.0% |
| !! | TTGTGTTTTTGTTTGAGTAC+AGG | + | chr8_3:5999789-5999808 | Msa1272380:intron | 30.0% |
| GAATATAATTATGACACACC+AGG | + | chr8_3:6000237-6000256 | Msa1272380:intron | 30.0% | |
| !! | TATTTTTCAACAAATCCACC+TGG | - | chr8_3:6000258-6000277 | None:intergenic | 30.0% |
| !!! | GTCTGTTTCTAACAGTTTTA+TGG | + | chr8_3:6000342-6000361 | Msa1272380:intron | 30.0% |
| !! | GAATATAAAGTGTTGATGCT+AGG | - | chr8_3:6000413-6000432 | None:intergenic | 30.0% |
| GCATCAACACTTTATATTCA+AGG | + | chr8_3:6000414-6000433 | Msa1272380:intron | 30.0% | |
| TAAACTAGATACTTTCCAGA+AGG | + | chr8_3:6000634-6000653 | Msa1272380:intron | 30.0% | |
| TCTTGAATATGAAACTCCAT+GGG | + | chr8_3:6000707-6000726 | Msa1272380:intron | 30.0% | |
| TGGCACATATCATATATAAG+CGG | + | chr8_3:6000794-6000813 | Msa1272380:intron | 30.0% | |
| GTATTGTCTCTTATAAGAGA+AGG | + | chr8_3:6000880-6000899 | Msa1272380:intron | 30.0% | |
| AAGAATGAATGGAAATGCTT+TGG | + | chr8_3:6001021-6001040 | Msa1272380:intron | 30.0% | |
| !! | ATTTTGAGAGACTATGTGTC+TGG | + | chr8_3:5998332-5998351 | Msa1272380:intron | 35.0% |
| ACGTTCATGTCTGATTCTAT+AGG | - | chr8_3:5998362-5998381 | None:intergenic | 35.0% | |
| !!! | GCTTTTGAAATTAGGAAGTG+GGG | + | chr8_3:5998603-5998622 | Msa1272380:intron | 35.0% |
| AACATTATTGCTAACCCACT+TGG | + | chr8_3:5998751-5998770 | Msa1272380:intron | 35.0% | |
| ACATTATTGCTAACCCACTT+GGG | + | chr8_3:5998752-5998771 | Msa1272380:intron | 35.0% | |
| GTTAAGAGAAGCAAACTCTA+AGG | - | chr8_3:5998802-5998821 | None:intergenic | 35.0% | |
| GTTGGACTCTTTAGATTAGT+TGG | + | chr8_3:5998913-5998932 | Msa1272380:intron | 35.0% | |
| !! | TAGATTAGTTGGTCTTAAGC+CGG | + | chr8_3:5998924-5998943 | Msa1272380:intron | 35.0% |
| CTATTATCTTGAGCCTTTCT+TGG | - | chr8_3:5999100-5999119 | None:intergenic | 35.0% | |
| GATAATAGAATAGCCCAAGT+AGG | + | chr8_3:5999112-5999131 | Msa1272380:intron | 35.0% | |
| !! | CTAGATCCTTCTAAAACATG+CGG | - | chr8_3:5999184-5999203 | None:intergenic | 35.0% |
| AGTAATTTCTCCTTCCTTGT+AGG | + | chr8_3:5999352-5999371 | Msa1272380:intron | 35.0% | |
| !! | TATGGTTACAGTTTGTTGAC+TGG | + | chr8_3:5999461-5999480 | Msa1272380:intron | 35.0% |
| !! | ATGGTTACAGTTTGTTGACT+GGG | + | chr8_3:5999462-5999481 | Msa1272380:intron | 35.0% |
| ! | GTGTCTAAAGTTGTAGAATC+TGG | + | chr8_3:5999550-5999569 | Msa1272380:intron | 35.0% |
| TAGTTTGGGGAATGACTAAA+TGG | + | chr8_3:5999599-5999618 | Msa1272380:intron | 35.0% | |
| AGTTTGGGGAATGACTAAAT+GGG | + | chr8_3:5999600-5999619 | Msa1272380:intron | 35.0% | |
| ATTCCAGTATAGTAGGAAAG+CGG | - | chr8_3:5999685-5999704 | None:intergenic | 35.0% | |
| TCCTACTATACTGGAATTCT+CGG | + | chr8_3:5999688-5999707 | Msa1272380:intron | 35.0% | |
| TGTCATGAATCACAACGAAA+TGG | - | chr8_3:5999765-5999784 | None:intergenic | 35.0% | |
| TTCAAAGAAACCAGCATAAG+CGG | - | chr8_3:5999829-5999848 | None:intergenic | 35.0% | |
| !! | TATGCTGGTTTCTTTGAAGT+AGG | + | chr8_3:5999831-5999850 | Msa1272380:CDS | 35.0% |
| AAAACTGTCTCTCCTTTCTT+AGG | - | chr8_3:5999861-5999880 | None:intergenic | 35.0% | |
| AACCATGCAATTTGGCAAAT+TGG | - | chr8_3:5999923-5999942 | None:intergenic | 35.0% | |
| AACATAGCAACCATGCAATT+TGG | - | chr8_3:5999931-5999950 | None:intergenic | 35.0% | |
| ! | GGATAGTGGTTATTGTAGTT+AGG | - | chr8_3:6000103-6000122 | None:intergenic | 35.0% |
| TATAATTATGACACACCAGG+TGG | + | chr8_3:6000240-6000259 | Msa1272380:intron | 35.0% | |
| ! | GACATTTACTTTGAGAACGT+TGG | + | chr8_3:6000661-6000680 | Msa1272380:intron | 35.0% |
| ! | ATTTACTTTGAGAACGTTGG+AGG | + | chr8_3:6000664-6000683 | Msa1272380:intron | 35.0% |
| CTCTTGAATATGAAACTCCA+TGG | + | chr8_3:6000706-6000725 | Msa1272380:intron | 35.0% | |
| TACAATCTTACTCAACCTGA+AGG | + | chr8_3:6000760-6000779 | Msa1272380:intron | 35.0% | |
| GTCTCTTATAAGAGAAGGAA+AGG | + | chr8_3:6000885-6000904 | Msa1272380:intron | 35.0% | |
| CTGTTTAGTGGTCAAAATGT+TGG | + | chr8_3:6000967-6000986 | Msa1272380:intron | 35.0% | |
| CTCATGAGTGAAAGAATGAA+TGG | + | chr8_3:6001010-6001029 | Msa1272380:intron | 35.0% | |
| TGTGTTTAGTTACTTGTGCA+TGG | + | chr8_3:6001086-6001105 | Msa1272380:intron | 35.0% | |
| ATTACTCTCAAGCTTCCACA+AGG | + | chr8_3:5998395-5998414 | Msa1272380:intron | 40.0% | |
| TTTGAGCAGAACCACATCAT+TGG | - | chr8_3:5998423-5998442 | None:intergenic | 40.0% | |
| GATTCTCAGATAAGGATCAC+AGG | - | chr8_3:5998459-5998478 | None:intergenic | 40.0% | |
| TCCTTATCTGAGAATCCTGA+TGG | + | chr8_3:5998463-5998482 | Msa1272380:intron | 40.0% | |
| TAGCATGACATACAGAACCA+GGG | - | chr8_3:5998523-5998542 | None:intergenic | 40.0% | |
| ATAGCATGACATACAGAACC+AGG | - | chr8_3:5998524-5998543 | None:intergenic | 40.0% | |
| TCTTAACGTTTCGATTCCCT+CGG | + | chr8_3:5998815-5998834 | Msa1272380:intron | 40.0% | |
| CACCTACGACTCATCATAAT+GGG | - | chr8_3:5999212-5999231 | None:intergenic | 40.0% | |
| TCACCTACGACTCATCATAA+TGG | - | chr8_3:5999213-5999232 | None:intergenic | 40.0% | |
| !! | GTGTATGGTACCACTTTTGA+TGG | - | chr8_3:5999380-5999399 | None:intergenic | 40.0% |
| !! | GGGCCAATATGTCACTTTAA+CGG | + | chr8_3:5999482-5999501 | Msa1272380:intron | 40.0% |
| CTGCCGTTAAAGTGACATAT+TGG | - | chr8_3:5999488-5999507 | None:intergenic | 40.0% | |
| TTCCAGTATAGTAGGAAAGC+GGG | - | chr8_3:5999684-5999703 | None:intergenic | 40.0% | |
| ACCGAGAATTCCAGTATAGT+AGG | - | chr8_3:5999692-5999711 | None:intergenic | 40.0% | |
| TTGTTTGAGTACAGGTATGC+CGG | + | chr8_3:5999797-5999816 | Msa1272380:intron | 40.0% | |
| !! | GTTTTTGTTTCATCTGCCTC+TGG | + | chr8_3:5999876-5999895 | Msa1272380:CDS | 40.0% |
| TTGCATGGTTGCTATGTTGT+TGG | + | chr8_3:5999933-5999952 | Msa1272380:CDS | 40.0% | |
| !! | AAGTGCTGGAAGTAAAGAGA+AGG | + | chr8_3:5999956-5999975 | Msa1272380:CDS | 40.0% |
| TCAACAAGTGAGCAAAGACT+TGG | - | chr8_3:6000124-6000143 | None:intergenic | 40.0% | |
| ! | AAGTCTTTGCTCACTTGTTG+AGG | + | chr8_3:6000123-6000142 | Msa1272380:intron | 40.0% |
| CACATGTGACATTGTTGTGT+TGG | - | chr8_3:6000485-6000504 | None:intergenic | 40.0% | |
| AAGTAAATGTCGATGCCTTC+TGG | - | chr8_3:6000652-6000671 | None:intergenic | 40.0% | |
| !! | ACCTGAAGGTGTCACAAATT+TGG | + | chr8_3:6000774-6000793 | Msa1272380:intron | 40.0% |
| ! | CATATATAAGCGGATTCGGA+TGG | + | chr8_3:6000804-6000823 | Msa1272380:intron | 40.0% |
| AGAAGGAAAGGTTGTGTATG+TGG | + | chr8_3:6000897-6000916 | Msa1272380:intron | 40.0% | |
| TATGTGGAAGACATAGCTGA+GGG | + | chr8_3:6000913-6000932 | Msa1272380:intron | 40.0% | |
| TCCACAAGGTTCCAATGATG+TGG | + | chr8_3:5998409-5998428 | Msa1272380:intron | 45.0% | |
| ACCACATCATTGGAACCTTG+TGG | - | chr8_3:5998413-5998432 | None:intergenic | 45.0% | |
| GCCATCAGGATTCTCAGATA+AGG | - | chr8_3:5998467-5998486 | None:intergenic | 45.0% | |
| AAGTCCTGCAATAGTGTCCT+TGG | - | chr8_3:5998489-5998508 | None:intergenic | 45.0% | |
| AAGGACACTATTGCAGGACT+TGG | + | chr8_3:5998488-5998507 | Msa1272380:intron | 45.0% | |
| AGCATGACATACAGAACCAG+GGG | - | chr8_3:5998522-5998541 | None:intergenic | 45.0% | |
| TATTGCTAACCCACTTGGGT+TGG | + | chr8_3:5998756-5998775 | Msa1272380:intron | 45.0% | |
| !!! | GATTCCCTCGGTGTCAATTT+TGG | + | chr8_3:5998827-5998846 | Msa1272380:intron | 45.0% |
| ! | GTCCATACATAGTCTTGCTC+TGG | + | chr8_3:5998857-5998876 | Msa1272380:intron | 45.0% |
| AGCCAGAGCAAGACTATGTA+TGG | - | chr8_3:5998862-5998881 | None:intergenic | 45.0% | |
| !! | GTGAGTCCGCATGTTTTAGA+AGG | + | chr8_3:5999175-5999194 | Msa1272380:intron | 45.0% |
| CACCCATTATGATGAGTCGT+AGG | + | chr8_3:5999207-5999226 | Msa1272380:intron | 45.0% | |
| ! | TTTGATGGCACCTACAAGGA+AGG | - | chr8_3:5999365-5999384 | None:intergenic | 45.0% |
| !! | CACTTTTGATGGCACCTACA+AGG | - | chr8_3:5999369-5999388 | None:intergenic | 45.0% |
| ! | CTTGTAGGTGCCATCAAAAG+TGG | + | chr8_3:5999367-5999386 | Msa1272380:intron | 45.0% |
| GAGTAATTGCAGCCATTGAC+AGG | + | chr8_3:5999520-5999539 | Msa1272380:intron | 45.0% | |
| TTGCAGCCATTGACAGGATT+AGG | + | chr8_3:5999526-5999545 | Msa1272380:intron | 45.0% | |
| GACACTCCTAATCCTGTCAA+TGG | - | chr8_3:5999535-5999554 | None:intergenic | 45.0% | |
| TGTTTGAGTACAGGTATGCC+GGG | + | chr8_3:5999798-5999817 | Msa1272380:intron | 45.0% | |
| GAAGTAGGCTCTCCTAAGAA+AGG | + | chr8_3:5999846-5999865 | Msa1272380:CDS | 45.0% | |
| GGCCAATTTGCCAAATTGCA+TGG | + | chr8_3:5999918-5999937 | Msa1272380:CDS | 45.0% | |
| ! | TGCTATGTTGTTGGAAGTGC+TGG | + | chr8_3:5999942-5999961 | Msa1272380:CDS | 45.0% |
| GTGAGCAAAGACTTGGATAG+TGG | - | chr8_3:6000117-6000136 | None:intergenic | 45.0% | |
| !! | ACCTCGATGCAGCTTTGAAA+AGG | + | chr8_3:6000320-6000339 | Msa1272380:intron | 45.0% |
| ! | ACCTTTTCAAAGCTGCATCG+AGG | - | chr8_3:6000324-6000343 | None:intergenic | 45.0% |
| ! | AAGGTGTTTCCAACACGTGT+TGG | + | chr8_3:6000433-6000452 | Msa1272380:intron | 45.0% |
| TGTCAGACACTAACACGTGT+CGG | - | chr8_3:6000462-6000481 | None:intergenic | 45.0% | |
| TGTGAGATCATTCCACACAC+AGG | - | chr8_3:6000739-6000758 | None:intergenic | 45.0% | |
| GCCAAATTTGTGACACCTTC+AGG | - | chr8_3:6000778-6000797 | None:intergenic | 45.0% | |
| ! | TATAAGCGGATTCGGATGGA+AGG | + | chr8_3:6000808-6000827 | Msa1272380:intron | 45.0% |
| GTATGTGGAAGACATAGCTG+AGG | + | chr8_3:6000912-6000931 | Msa1272380:intron | 45.0% | |
| ATAGCTGAGGGTCTTGAGAA+TGG | + | chr8_3:6000925-6000944 | Msa1272380:intron | 45.0% | |
| !! | GCTTTGGTTGGTCTGTTTAG+TGG | + | chr8_3:6000955-6000974 | Msa1272380:intron | 45.0% |
| !!! | AAAAATACTATTTTAAATTT+TGG | + | chr8_3:6000169-6000188 | Msa1272380:intron | 5.0% |
| TCTGAGAATCCTGATGGCCA+AGG | + | chr8_3:5998469-5998488 | Msa1272380:intron | 50.0% | |
| CAATAGTGTCCTTGGCCATC+AGG | - | chr8_3:5998481-5998500 | None:intergenic | 50.0% | |
| ATGGCCAAGGACACTATTGC+AGG | + | chr8_3:5998482-5998501 | Msa1272380:intron | 50.0% | |
| GACACTATTGCAGGACTTGG+TGG | + | chr8_3:5998491-5998510 | Msa1272380:intron | 50.0% | |
| !! | TTGGCATGTGGTGTTGGTTC+AGG | + | chr8_3:5998775-5998794 | Msa1272380:intron | 50.0% |
| !!! | TCCCTCGGTGTCAATTTTGG+TGG | + | chr8_3:5998830-5998849 | Msa1272380:intron | 50.0% |
| CCCACCAAAATTGACACCGA+GGG | - | chr8_3:5998834-5998853 | None:intergenic | 50.0% | |
| !!! | CCCTCGGTGTCAATTTTGGT+GGG | + | chr8_3:5998831-5998850 | Msa1272380:intron | 50.0% |
| GTCCCGCTTTCCTACTATAC+TGG | + | chr8_3:5999679-5999698 | Msa1272380:intron | 50.0% | |
| AAGTTGACCAACAGCACCAG+AGG | - | chr8_3:5999895-5999914 | None:intergenic | 50.0% | |
| !! | GGTGCTGTTGGTCAACTTGT+TGG | + | chr8_3:5999897-5999916 | Msa1272380:CDS | 50.0% |
| ACAGACCAACCAAAGCTGCA+GGG | - | chr8_3:6000951-6000970 | None:intergenic | 50.0% | |
| AACAGACCAACCAAAGCTGC+AGG | - | chr8_3:6000952-6000971 | None:intergenic | 50.0% | |
| ! | CTTGTGCATGGAGCACTCTT+TGG | + | chr8_3:6001098-6001117 | Msa1272380:CDS | 50.0% |
| !! | AACCCACTTGGGTTGGCATG+TGG | + | chr8_3:5998763-5998782 | Msa1272380:intron | 55.0% |
| CACCACATGCCAACCCAAGT+GGG | - | chr8_3:5998768-5998787 | None:intergenic | 55.0% | |
| ACACCACATGCCAACCCAAG+TGG | - | chr8_3:5998769-5998788 | None:intergenic | 55.0% | |
| !! | CTTGGGTTGGCATGTGGTGT+TGG | + | chr8_3:5998769-5998788 | Msa1272380:intron | 55.0% |
| GCCCACCAAAATTGACACCG+AGG | - | chr8_3:5998835-5998854 | None:intergenic | 55.0% | |
| TTAAACGAGCCCCCTGCAAG+TGG | + | chr8_3:5998882-5998901 | Msa1272380:intron | 55.0% | |
| AACCCCATCGTCCACTTGCA+GGG | - | chr8_3:5998896-5998915 | None:intergenic | 55.0% | |
| CCAGCATAAGCGGTCATTCC+CGG | - | chr8_3:5999819-5999838 | None:intergenic | 55.0% | |
| !! | TCATCTGCCTCTGGTGCTGT+TGG | + | chr8_3:5999885-5999904 | Msa1272380:CDS | 55.0% |
| TGTCGGACACCAACACGTGT+TGG | - | chr8_3:6000445-6000464 | None:intergenic | 55.0% | |
| TGAGAATGGCCCTGCAGCTT+TGG | + | chr8_3:6000939-6000958 | Msa1272380:intron | 55.0% | |
| ! | AATGGCCCTGCAGCTTTGGT+TGG | + | chr8_3:6000943-6000962 | Msa1272380:intron | 55.0% |
| ACCCCATCGTCCACTTGCAG+GGG | - | chr8_3:5998895-5998914 | None:intergenic | 60.0% | |
| CAACCCCATCGTCCACTTGC+AGG | - | chr8_3:5998897-5998916 | None:intergenic | 60.0% | |
| CTGCAAGTGGACGATGGGGT+TGG | + | chr8_3:5998895-5998914 | Msa1272380:intron | 60.0% | |
| CCGGGAATGACCGCTTATGC+TGG | + | chr8_3:5999816-5999835 | Msa1272380:CDS | 60.0% | |
| CACACACAGGTATGCGCCCA+TGG | - | chr8_3:6000726-6000745 | None:intergenic | 60.0% | |
| CATGGGCGCATACCTGTGTG+TGG | + | chr8_3:6000724-6000743 | Msa1272380:intron | 60.0% | |
| !! | GGACTTGGTGGTCTCACCCC+TGG | + | chr8_3:5998503-5998522 | Msa1272380:intron | 65.0% |
| AGCCCCCTGCAAGTGGACGA+TGG | + | chr8_3:5998889-5998908 | Msa1272380:intron | 65.0% | |
| GCCCCCTGCAAGTGGACGAT+GGG | + | chr8_3:5998890-5998909 | Msa1272380:intron | 65.0% | |
| CCCCATCGTCCACTTGCAGG+GGG | - | chr8_3:5998894-5998913 | None:intergenic | 65.0% | |
| CCCCCTGCAAGTGGACGATG+GGG | + | chr8_3:5998891-5998910 | Msa1272380:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 5998305 | 6001124 | 5998305 | ID=Msa1272380;Name=Msa1272380 |
| chr8_3 | mRNA | 5998305 | 6001124 | 5998305 | ID=Msa1272380-mRNA-1;Parent=Msa1272380;Name=Msa1272380-mRNA-1;_AED=0.50;_eAED=0.57;_QI=0|0|0.25|0.75|1|1|4|0|70 |
| chr8_3 | exon | 5998305 | 5998313 | 5998305 | ID=Msa1272380-mRNA-1:exon:2195;Parent=Msa1272380-mRNA-1 |
| chr8_3 | exon | 5999747 | 5999753 | 5999747 | ID=Msa1272380-mRNA-1:exon:2196;Parent=Msa1272380-mRNA-1 |
| chr8_3 | exon | 5999811 | 5999977 | 5999811 | ID=Msa1272380-mRNA-1:exon:2197;Parent=Msa1272380-mRNA-1 |
| chr8_3 | exon | 6001095 | 6001124 | 6001095 | ID=Msa1272380-mRNA-1:exon:2198;Parent=Msa1272380-mRNA-1 |
| chr8_3 | CDS | 5998305 | 5998313 | 5998305 | ID=Msa1272380-mRNA-1:cds;Parent=Msa1272380-mRNA-1 |
| chr8_3 | CDS | 5999747 | 5999753 | 5999747 | ID=Msa1272380-mRNA-1:cds;Parent=Msa1272380-mRNA-1 |
| chr8_3 | CDS | 5999811 | 5999977 | 5999811 | ID=Msa1272380-mRNA-1:cds;Parent=Msa1272380-mRNA-1 |
| chr8_3 | CDS | 6001095 | 6001124 | 6001095 | ID=Msa1272380-mRNA-1:cds;Parent=Msa1272380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
