AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1428440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428440 MtrunA17_Chr6g0450831 72.430 214 21 2 29 204 50 263 1.31e-100 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1428440 AT3G55250.1 46.759 216 77 2 27 204 25 240 2.06e-62 195

Find 60 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCATGTAAGCTTTAA+TGG 0.159444 tig0026351:-61509 Msa1428440:intergenic
TCTCAAAACTGAGGAGATTT+TGG 0.193705 tig0026351:+63514 Msa1428440:CDS
ACAACATTTGAAAATGAGTT+TGG 0.277068 tig0026351:-61532 Msa1428440:intergenic
AGGCTCAAACACCTTGCTTT+AGG 0.281011 tig0026351:-64923 Msa1428440:intergenic
AGCAAGGTGTTTGAGCCTTT+TGG 0.286437 tig0026351:+64928 Msa1428440:three_prime_UTR
AATGTTGTTAGCAAAGTTAT+TGG 0.287367 tig0026351:+61547 Msa1428440:CDS
TGTTGTTGGCTAGCTGCTAT+TGG 0.290097 tig0026351:+63482 Msa1428440:CDS
TTCACTAGTTTGCTTGTTTG+TGG 0.315318 tig0026351:+65094 Msa1428440:three_prime_UTR
GCAATCTACGTTTGTTGCTT+CGG 0.330000 tig0026351:+64617 Msa1428440:CDS
GTTGTAAAACTTGGGGTTAT+AGG 0.331320 tig0026351:+64987 Msa1428440:three_prime_UTR
ATTGGTGCTCTTCCTGTTGT+TGG 0.376523 tig0026351:+61565 Msa1428440:CDS
TTGATATACAATGCATTGAA+TGG 0.390085 tig0026351:+64890 Msa1428440:three_prime_UTR
TAGAGAAGGGCAAGACAAAA+AGG 0.394828 tig0026351:+64545 Msa1428440:intron
TCTATGTTCTGCTATGTTGT+TGG 0.398804 tig0026351:+63468 Msa1428440:CDS
TCAACAGCTTCCTTTGATAG+AGG 0.406723 tig0026351:-64796 Msa1428440:intergenic
CTCTCATCTTCTGTCTCTAT+AGG 0.411361 tig0026351:-64647 Msa1428440:intergenic
TACTAGATGTTGTAAAACTT+GGG 0.414953 tig0026351:+64979 Msa1428440:three_prime_UTR
GATAGAGGCTTAGCAGCATC+TGG 0.416100 tig0026351:-64781 Msa1428440:intergenic
TTCTCGACTCGAACCTCCAT+TGG 0.422859 tig0026351:-64584 Msa1428440:intergenic
TGGAAGGAGTCGGAAGGCTT+CGG 0.426849 tig0026351:+63534 Msa1428440:CDS
CAAGAAACTTCATCAATTCA+TGG 0.426995 tig0026351:+60954 Msa1428440:CDS
TTTAATGGTGAAATTTGTAG+TGG 0.432350 tig0026351:-61494 Msa1428440:intergenic
CTTTGTTGTTGCAATTCACC+AGG 0.433596 tig0026351:-60979 Msa1428440:intergenic
TTATGTGTAGGCAGGGGATC+AGG 0.435584 tig0026351:+63434 Msa1428440:intron
CAACATAGCAGAACATAGAT+AGG 0.442461 tig0026351:-63464 Msa1428440:intergenic
CTCAAACGACATTGAATTTG+AGG 0.443655 tig0026351:+63559 Msa1428440:CDS
AGATGATACAAAAGATTTCA+AGG 0.444324 tig0026351:+65124 Msa1428440:three_prime_UTR
ATACTAGATGTTGTAAAACT+TGG 0.444757 tig0026351:+64978 Msa1428440:three_prime_UTR
TGGCTAGCTGCTATTGGTGC+AGG 0.446908 tig0026351:+63488 Msa1428440:CDS
TTTCACCATTAAAGCTTACA+TGG 0.460009 tig0026351:+61504 Msa1428440:CDS
GCTAGGATTATGAGTGATGA+AGG 0.474789 tig0026351:+61595 Msa1428440:CDS
TGCACCTCCCGCTGTTCCAA+TGG 0.475703 tig0026351:+64568 Msa1428440:CDS
GTGTAGGCAGGGGATCAGGC+AGG 0.479469 tig0026351:+63438 Msa1428440:intron
CTTCATCAATTCATGGAACC+TGG 0.501180 tig0026351:+60961 Msa1428440:CDS
CTCTCTTGCTTCATCCATCA+TGG 0.504937 tig0026351:-63597 Msa1428440:intergenic
CTAGCTAAAAGACCAACAAC+AGG 0.516749 tig0026351:-61577 Msa1428440:intergenic
CGAACCTCCATTGGAACAGC+GGG 0.522801 tig0026351:-64575 Msa1428440:intergenic
ATGGCAGACAAAGTAGAAGA+TGG 0.525072 tig0026351:+64742 Msa1428440:exon
GTTGGTGATGAACATGGTGG+TGG 0.527219 tig0026351:-61451 Msa1428440:intergenic
CAAAGTAGAAGATGGAGGTA+TGG 0.536962 tig0026351:+64750 Msa1428440:exon
CTACGTTTGTTGCTTCGGAA+AGG 0.538343 tig0026351:+64622 Msa1428440:CDS
TTCCCCTATGAGTAGCCAAA+AGG 0.559654 tig0026351:-64943 Msa1428440:intergenic
AAAACAAGAGATTCGACGCA+TGG 0.562381 tig0026351:+64711 Msa1428440:CDS
TGCTGCTAAGCCTCTATCAA+AGG 0.573332 tig0026351:+64786 Msa1428440:three_prime_UTR
TCGACGCATGGTTAAAGAGA+TGG 0.576065 tig0026351:+64723 Msa1428440:CDS
GAATTATATTTCCTAAAGCA+AGG 0.579582 tig0026351:+64912 Msa1428440:three_prime_UTR
ACCTCCCGCTGTTCCAATGG+AGG 0.583040 tig0026351:+64571 Msa1428440:CDS
ACCTCCATTGGAACAGCGGG+AGG 0.583730 tig0026351:-64572 Msa1428440:intergenic
TTAATGGTGAAATTTGTAGT+GGG 0.585415 tig0026351:-61493 Msa1428440:intergenic
TGTAGGCAGGGGATCAGGCA+GGG 0.590064 tig0026351:+63439 Msa1428440:intron
ACTAGATGTTGTAAAACTTG+GGG 0.590076 tig0026351:+64980 Msa1428440:three_prime_UTR
TCGAACCTCCATTGGAACAG+CGG 0.593033 tig0026351:-64576 Msa1428440:intergenic
ACAAACAAGCAAACTAGTGA+AGG 0.614970 tig0026351:-65092 Msa1428440:intergenic
CATGATGGATGAAGCAAGAG+AGG 0.615451 tig0026351:+63598 Msa1428440:CDS
ACAGACTTTCATAGCCATGA+TGG 0.617255 tig0026351:+63583 Msa1428440:CDS
CTATAGAGACAGAAGATGAG+AGG 0.617615 tig0026351:+64648 Msa1428440:CDS
CTGGTGAATTGCAACAACAA+AGG 0.640210 tig0026351:+60980 Msa1428440:CDS
TGCAGGTCTTCTCAAAACTG+AGG 0.678847 tig0026351:+63505 Msa1428440:CDS
TTTGTTGGTGATGAACATGG+TGG 0.685194 tig0026351:-61454 Msa1428440:intergenic
GCAGACAAAGTAGAAGATGG+AGG 0.689858 tig0026351:+64745 Msa1428440:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - tig0026351:61201-61220 Msa1428440:intergenic 0.0%
!! TATATATATATATATATATA+TGG - tig0026351:61202-61221 Msa1428440:intergenic 0.0%
!!! TCTTATTTTCTATTTTTTTA+CGG - tig0026351:61042-61061 Msa1428440:intergenic 10.0%
!! TTTATAAAATTAGAGTTTAA+TGG - tig0026351:62119-62138 Msa1428440:intergenic 10.0%
!!! ATTAAACTCTAATTTTATAA+AGG + tig0026351:62118-62137 Msa1428440:intron 10.0%
!!! TTTGGTTCAATTAAAATTAA+AGG - tig0026351:61088-61107 Msa1428440:intergenic 15.0%
!! AAAGATGCAAAATTTAATAA+AGG - tig0026351:61757-61776 Msa1428440:intergenic 15.0%
!! TAACCTTAATCAAATTATAA+GGG - tig0026351:62903-62922 Msa1428440:intergenic 15.0%
!!! TTTCCTTTTAATCTAATTTA+GGG - tig0026351:63842-63861 Msa1428440:intergenic 15.0%
!!! TTTTCCTTTTAATCTAATTT+AGG - tig0026351:63843-63862 Msa1428440:intergenic 15.0%
!!! TTAAGCTATTTTTATAACAA+AGG - tig0026351:64415-64434 Msa1428440:intergenic 15.0%
!! TATATGAAGTGAATTTCAAA+TGG + tig0026351:61227-61246 Msa1428440:intron 20.0%
!! TCTCATTCACATAAAATAAA+AGG - tig0026351:61928-61947 Msa1428440:intergenic 20.0%
!! ATAAAATTAGAGTTTAATGG+AGG - tig0026351:62116-62135 Msa1428440:intergenic 20.0%
!!! TCTAAAGTTAAGTGTATTTT+TGG + tig0026351:62161-62180 Msa1428440:intron 20.0%
!!! AAAATTGATTCTAACTAGTT+TGG - tig0026351:62406-62425 Msa1428440:intergenic 20.0%
!!! AAACTAGTTAGAATCAATTT+TGG + tig0026351:62405-62424 Msa1428440:intron 20.0%
!! AATAGTTGTATCATTTGATA+AGG + tig0026351:62761-62780 Msa1428440:intron 20.0%
!! AAATAACATGAAGTAACAAT+TGG + tig0026351:62801-62820 Msa1428440:intron 20.0%
!! ATGCTCAAAATTTAATCTTT+GGG + tig0026351:62874-62893 Msa1428440:intron 20.0%
!! TAACCCTTATAATTTGATTA+AGG + tig0026351:62897-62916 Msa1428440:intron 20.0%
!! CTAACCTTAATCAAATTATA+AGG - tig0026351:62904-62923 Msa1428440:intergenic 20.0%
!! TGTAACCTTATAATTGATTA+AGG + tig0026351:63034-63053 Msa1428440:intron 20.0%
!! AAAGATTCATATTTGATTGT+GGG - tig0026351:63209-63228 Msa1428440:intergenic 20.0%
!! AATCAAATATGAATCTTTCT+TGG + tig0026351:63211-63230 Msa1428440:intron 20.0%
!! ATCAAATATGAATCTTTCTT+GGG + tig0026351:63212-63231 Msa1428440:intron 20.0%
!!! TATATTTGATTTGTAGACTA+TGG + tig0026351:63779-63798 Msa1428440:intron 20.0%
!! TTACCCTAAATTAGATTAAA+AGG + tig0026351:63836-63855 Msa1428440:intron 20.0%
!! AATAGGAATGATCTAAATAT+TGG + tig0026351:64044-64063 Msa1428440:intron 20.0%
!! ATAGGAATGATCTAAATATT+GGG + tig0026351:64045-64064 Msa1428440:intron 20.0%
!!! TATTTTGTTTGAGAAAGTTA+AGG - tig0026351:64837-64856 Msa1428440:intergenic 20.0%
! TTGAACCAAAATCAAAAACA+AGG + tig0026351:61098-61117 Msa1428440:intron 25.0%
! TGAACCAAAATCAAAAACAA+GGG + tig0026351:61099-61118 Msa1428440:intron 25.0%
! TATATGTTGTGTTATCTTGT+TGG - tig0026351:61262-61281 Msa1428440:intergenic 25.0%
!!! TTTGAAGTTTGTTGTTTTGT+TGG - tig0026351:61472-61491 Msa1428440:intergenic 25.0%
! TTAATGGTGAAATTTGTAGT+GGG - tig0026351:61496-61515 Msa1428440:intergenic 25.0%
! TTTAATGGTGAAATTTGTAG+TGG - tig0026351:61497-61516 Msa1428440:intergenic 25.0%
! ACAACATTTGAAAATGAGTT+TGG - tig0026351:61535-61554 Msa1428440:intergenic 25.0%
! AATGTTGTTAGCAAAGTTAT+TGG + tig0026351:61547-61566 Msa1428440:CDS 25.0%
!! GTTACAATTTTTACCTATTG+AGG + tig0026351:61789-61808 Msa1428440:intron 25.0%
!!! AACCTAATGTTGCATTTTTT+TGG + tig0026351:61840-61859 Msa1428440:intron 25.0%
! AACCAAAAAAATGCAACATT+AGG - tig0026351:61845-61864 Msa1428440:intergenic 25.0%
!!! TAGTTATTTTTTGACTTGTG+AGG + tig0026351:61870-61889 Msa1428440:intron 25.0%
!!! TGTAAACTAGTTTTACACTT+AGG + tig0026351:61961-61980 Msa1428440:intron 25.0%
! TCCAATTAGAAATGAGAATT+AGG + tig0026351:61984-62003 Msa1428440:intron 25.0%
! ACCTAATTCTCATTTCTAAT+TGG - tig0026351:61988-62007 Msa1428440:intergenic 25.0%
! GAAAGATGATGTGAATTTAT+TGG + tig0026351:62055-62074 Msa1428440:intron 25.0%
!! ATAAAGGCAATTTTGCATTT+TGG + tig0026351:62134-62153 Msa1428440:intron 25.0%
!! TAAAGGCAATTTTGCATTTT+GGG + tig0026351:62135-62154 Msa1428440:intron 25.0%
!!! TGATTTTGAGTGAATTGATT+CGG + tig0026351:62199-62218 Msa1428440:intron 25.0%
!!! TGATTCGGTAAAATTGATTT+TGG + tig0026351:62214-62233 Msa1428440:intron 25.0%
!! AGTTTAAAGTGAGTTATGTT+TGG + tig0026351:62251-62270 Msa1428440:intron 25.0%
!! GTTTAAAGTGAGTTATGTTT+GGG + tig0026351:62252-62271 Msa1428440:intron 25.0%
!!! TTAGAATCAATTTTGGTCAT+CGG + tig0026351:62412-62431 Msa1428440:intron 25.0%
! AATATCAACCATAATCAACA+GGG - tig0026351:62524-62543 Msa1428440:intergenic 25.0%
!! CAAAGATTAAATTTTGAGCA+TGG - tig0026351:62875-62894 Msa1428440:intergenic 25.0%
! CATGCTCAAAATTTAATCTT+TGG + tig0026351:62873-62892 Msa1428440:intron 25.0%
! AAGATGCAAAATTTGAACTT+GGG - tig0026351:62956-62975 Msa1428440:intergenic 25.0%
!! AAGTTCAAATTTTGCATCTT+GGG + tig0026351:62956-62975 Msa1428440:intron 25.0%
! TATAGTTTGATACCTAAATG+AGG + tig0026351:62984-63003 Msa1428440:intron 25.0%
! ACCTTATAATTGATTAAGGT+TGG + tig0026351:63038-63057 Msa1428440:intron 25.0%
! TTGTTCTGTATAGTTAAATG+AGG + tig0026351:63117-63136 Msa1428440:intron 25.0%
! GAAAGATTCATATTTGATTG+TGG - tig0026351:63210-63229 Msa1428440:intergenic 25.0%
!! TCTTTTCCTTTTTATTCTTG+AGG + tig0026351:63324-63343 Msa1428440:intron 25.0%
! AATCTACCTCAAGAATAAAA+AGG - tig0026351:63333-63352 Msa1428440:intergenic 25.0%
! TTCATGTGCTAAAATAGAAA+TGG + tig0026351:63374-63393 Msa1428440:intron 25.0%
!! TGATATTCAACACGATATTT+TGG - tig0026351:63934-63953 Msa1428440:intergenic 25.0%
!! CAACTTGATAGATTTAGAAT+CGG + tig0026351:64154-64173 Msa1428440:intron 25.0%
! CTAGAGAACTTATGAAAATA+TGG - tig0026351:64337-64356 Msa1428440:intergenic 25.0%
!! CATATTTTCATAAGTTCTCT+AGG + tig0026351:64335-64354 Msa1428440:intron 25.0%
!! AATTTTCCAGTTGTTAGAAT+AGG - tig0026351:64511-64530 Msa1428440:intergenic 25.0%
! TTGATATACAATGCATTGAA+TGG + tig0026351:64890-64909 Msa1428440:three_prime_UTR 25.0%
! GAATTATATTTCCTAAAGCA+AGG + tig0026351:64912-64931 Msa1428440:three_prime_UTR 25.0%
! ATACTAGATGTTGTAAAACT+TGG + tig0026351:64978-64997 Msa1428440:three_prime_UTR 25.0%
! TACTAGATGTTGTAAAACTT+GGG + tig0026351:64979-64998 Msa1428440:three_prime_UTR 25.0%
! AGATGATACAAAAGATTTCA+AGG + tig0026351:65124-65143 Msa1428440:three_prime_UTR 25.0%
CAAGAAACTTCATCAATTCA+TGG + tig0026351:60954-60973 Msa1428440:CDS 30.0%
ACATGAAGTAAGAAAGAGAA+AGG + tig0026351:61003-61022 Msa1428440:intron 30.0%
CATGAAGTAAGAAAGAGAAA+GGG + tig0026351:61004-61023 Msa1428440:intron 30.0%
!!! AAGACCCTTGTTTTTGATTT+TGG - tig0026351:61106-61125 Msa1428440:intergenic 30.0%
ACACAACATATATAAACGAG+AGG + tig0026351:61270-61289 Msa1428440:intron 30.0%
CAAAAACAAAACCACAAACA+TGG + tig0026351:61313-61332 Msa1428440:intron 30.0%
AGGTTGAAGAATTGTGAATA+TGG - tig0026351:61377-61396 Msa1428440:intergenic 30.0%
TTTCACCATTAAAGCTTACA+TGG + tig0026351:61504-61523 Msa1428440:CDS 30.0%
! ATTCTCCATGTAAGCTTTAA+TGG - tig0026351:61512-61531 Msa1428440:intergenic 30.0%
! ATTTTGCTGAGTTTAGAAGA+AGG + tig0026351:61640-61659 Msa1428440:intron 30.0%
! TTTTGCTGAGTTTAGAAGAA+GGG + tig0026351:61641-61660 Msa1428440:intron 30.0%
GAACATGAATTAACCTCAAT+AGG - tig0026351:61805-61824 Msa1428440:intergenic 30.0%
!!! TATTTTTTGACTTGTGAGGT+TGG + tig0026351:61874-61893 Msa1428440:intron 30.0%
GATGTGAATTTATTGGATGA+CGG + tig0026351:62062-62081 Msa1428440:intron 30.0%
ACCTTATAGTTGTCAGATTA+CGG + tig0026351:62470-62489 Msa1428440:intron 30.0%
GAATATCAACCATAATCAAC+AGG - tig0026351:62525-62544 Msa1428440:intergenic 30.0%
ATTGATACCCAACTAACAAA+TGG - tig0026351:62561-62580 Msa1428440:intergenic 30.0%
TTGTTAGTTGGGTATCAATT+AGG + tig0026351:62562-62581 Msa1428440:intron 30.0%
AACCATAAATCACTACATAC+TGG + tig0026351:62677-62696 Msa1428440:intron 30.0%
TTCCAGTATGTAGTGATTTA+TGG - tig0026351:62682-62701 Msa1428440:intergenic 30.0%
GTAAGAGAAATAAGCACAAT+TGG + tig0026351:62723-62742 Msa1428440:intron 30.0%
CAACTATTGATCATAGAGTT+TGG - tig0026351:62749-62768 Msa1428440:intergenic 30.0%
AGATGCAAAATTTGAACTTG+GGG - tig0026351:62955-62974 Msa1428440:intergenic 30.0%
CAAGATGCAAAATTTGAACT+TGG - tig0026351:62957-62976 Msa1428440:intergenic 30.0%
! CAAGTTCAAATTTTGCATCT+TGG + tig0026351:62955-62974 Msa1428440:intron 30.0%
GCCAACCTTAATCAATTATA+AGG - tig0026351:63042-63061 Msa1428440:intergenic 30.0%
AATATCCAAATTTGATCGTG+GGG - tig0026351:63099-63118 Msa1428440:intergenic 30.0%
CAATATCCAAATTTGATCGT+GGG - tig0026351:63100-63119 Msa1428440:intergenic 30.0%
ACAATATCCAAATTTGATCG+TGG - tig0026351:63101-63120 Msa1428440:intergenic 30.0%
! GTTAAATGAGGTTGATTTCA+TGG + tig0026351:63129-63148 Msa1428440:intron 30.0%
ATTCATATTTGATTGTGGGA+TGG - tig0026351:63205-63224 Msa1428440:intergenic 30.0%
! TGGGATTTAAAGTTGTCAAA+TGG + tig0026351:63231-63250 Msa1428440:intron 30.0%
! GGGATTTAAAGTTGTCAAAT+GGG + tig0026351:63232-63251 Msa1428440:intron 30.0%
CAAGTTTGAGTGATTTCATT+CGG + tig0026351:63256-63275 Msa1428440:intron 30.0%
!! ATTAGCCTTCATTCATTGTA+AGG - tig0026351:63296-63315 Msa1428440:intergenic 30.0%
! TATTCTTGAGGTAGATTTTG+TGG + tig0026351:63336-63355 Msa1428440:intron 30.0%
AATTAGTGTAAACTTAGTCC+AGG + tig0026351:63870-63889 Msa1428440:intron 30.0%
!!! AAAACCAGACTATTTTTTCC+TGG - tig0026351:63891-63910 Msa1428440:intergenic 30.0%
!!! TTTTGGAGCTCGAAATTTTA+AGG - tig0026351:63917-63936 Msa1428440:intergenic 30.0%
ATCGTGTTGAATATCAATTC+TGG + tig0026351:63938-63957 Msa1428440:intron 30.0%
GTTGAATATCAATTCTGGAT+CGG + tig0026351:63943-63962 Msa1428440:intron 30.0%
GATGTTCGTTTGTAACTAAT+AGG + tig0026351:64027-64046 Msa1428440:intron 30.0%
TAGGAAAATTCATTGCGATT+GGG - tig0026351:64087-64106 Msa1428440:intergenic 30.0%
GAAATGGATGAAACTTTACT+AGG - tig0026351:64106-64125 Msa1428440:intergenic 30.0%
! GCAATTTTCATTCTACGAAA+TGG - tig0026351:64122-64141 Msa1428440:intergenic 30.0%
GGAATATATGTCATACATCT+TGG - tig0026351:64190-64209 Msa1428440:intergenic 30.0%
TCAAATAAGTCAATCCAAAC+AGG - tig0026351:64224-64243 Msa1428440:intergenic 30.0%
AATATGGTGAAAACAGCTTA+TGG - tig0026351:64321-64340 Msa1428440:intergenic 30.0%
TATGTTGAACACTATAGAGA+AGG + tig0026351:64531-64550 Msa1428440:intron 30.0%
ATGTTGAACACTATAGAGAA+GGG + tig0026351:64532-64551 Msa1428440:intron 30.0%
!!! ATCTCTTGTTTTTGAACAGA+TGG - tig0026351:64703-64722 Msa1428440:intergenic 30.0%
ACTAGATGTTGTAAAACTTG+GGG + tig0026351:64980-64999 Msa1428440:three_prime_UTR 30.0%
GTCTTTGTGTCCAAGTAAAA+AGG + tig0026351:61121-61140 Msa1428440:intron 35.0%
TAGACCTTCATGAAAATGAG+TGG + tig0026351:61159-61178 Msa1428440:intron 35.0%
AGACCTTCATGAAAATGAGT+GGG + tig0026351:61160-61179 Msa1428440:intron 35.0%
TGTTGTGTTATCTTGTTGGT+TGG - tig0026351:61258-61277 Msa1428440:intergenic 35.0%
!! GTTTGAAAGTACCATGTTTG+TGG - tig0026351:61327-61346 Msa1428440:intergenic 35.0%
! GAATATGGTGATGAAGATGA+TGG - tig0026351:61362-61381 Msa1428440:intergenic 35.0%
! AAGAGAAGTGATGATGAAGA+TGG - tig0026351:61425-61444 Msa1428440:intergenic 35.0%
!!! TGTTTTGTTGGTGATGAACA+TGG - tig0026351:61460-61479 Msa1428440:intergenic 35.0%
TATCAGTTTCAAGCAAGAAG+AGG + tig0026351:61702-61721 Msa1428440:intron 35.0%
! TCATGTAGAATCGATTCTAG+AGG + tig0026351:62355-62374 Msa1428440:intron 35.0%
ACCGTAATCTGACAACTATA+AGG - tig0026351:62474-62493 Msa1428440:intergenic 35.0%
! GGTTGATATTCGCTAATAAG+TGG + tig0026351:62534-62553 Msa1428440:intron 35.0%
! TAAGTGGTCCATTTGTTAGT+TGG + tig0026351:62550-62569 Msa1428440:intron 35.0%
! AAGTGGTCCATTTGTTAGTT+GGG + tig0026351:62551-62570 Msa1428440:intron 35.0%
TTAGTTGGGTATCAATTAGG+AGG + tig0026351:62565-62584 Msa1428440:intron 35.0%
TAGTTGGGTATCAATTAGGA+GGG + tig0026351:62566-62585 Msa1428440:intron 35.0%
TTCAGGGTAAACTTGTAATC+TGG + tig0026351:62621-62640 Msa1428440:intron 35.0%
GCATGAAATCAACCTCATTT+AGG - tig0026351:62999-63018 Msa1428440:intergenic 35.0%
ACCAACCTTACAATGAATGA+AGG + tig0026351:63288-63307 Msa1428440:intron 35.0%
!! GGTGTTTGTTTGTTATGTGT+AGG + tig0026351:63422-63441 Msa1428440:intron 35.0%
!! TTTGTTTGTTATGTGTAGGC+AGG + tig0026351:63426-63445 Msa1428440:intron 35.0%
!! TTGTTTGTTATGTGTAGGCA+GGG + tig0026351:63427-63446 Msa1428440:intron 35.0%
CAACATAGCAGAACATAGAT+AGG - tig0026351:63467-63486 Msa1428440:intergenic 35.0%
TCTATGTTCTGCTATGTTGT+TGG + tig0026351:63468-63487 Msa1428440:CDS 35.0%
! TCTCAAAACTGAGGAGATTT+TGG + tig0026351:63514-63533 Msa1428440:CDS 35.0%
! AAAACTGAGGAGATTTTGGA+AGG + tig0026351:63518-63537 Msa1428440:CDS 35.0%
CTCAAACGACATTGAATTTG+AGG + tig0026351:63559-63578 Msa1428440:CDS 35.0%
TAGTCCAGGAAAAAATAGTC+TGG + tig0026351:63884-63903 Msa1428440:intron 35.0%
CGGCACATATACAAAATTCA+AGG + tig0026351:63963-63982 Msa1428440:intron 35.0%
ATTGCGATTGGGATTAATCA+AGG - tig0026351:64076-64095 Msa1428440:intergenic 35.0%
CTAGGAAAATTCATTGCGAT+TGG - tig0026351:64088-64107 Msa1428440:intergenic 35.0%
GACATATATTCCTGCTCTTT+CGG + tig0026351:64198-64217 Msa1428440:intron 35.0%
TATGCTCCTATTCTAACAAC+TGG + tig0026351:64502-64521 Msa1428440:intron 35.0%
GTTGTAAAACTTGGGGTTAT+AGG + tig0026351:64987-65006 Msa1428440:three_prime_UTR 35.0%
CAAACTAGTGAAGGAAAAAC+TGG - tig0026351:65086-65105 Msa1428440:intergenic 35.0%
ACAAACAAGCAAACTAGTGA+AGG - tig0026351:65095-65114 Msa1428440:intergenic 35.0%
!! TTCACTAGTTTGCTTGTTTG+TGG + tig0026351:65094-65113 Msa1428440:three_prime_UTR 35.0%
CTTCATCAATTCATGGAACC+TGG + tig0026351:60961-60980 Msa1428440:CDS 40.0%
!! CTTTGTTGTTGCAATTCACC+AGG - tig0026351:60982-61001 Msa1428440:intergenic 40.0%
CTGGTGAATTGCAACAACAA+AGG + tig0026351:60980-60999 Msa1428440:CDS 40.0%
! GTGTCCAAGTAAAAAGGTGT+TGG + tig0026351:61127-61146 Msa1428440:intron 40.0%
! GCAACCAACACCTTTTTACT+TGG - tig0026351:61134-61153 Msa1428440:intergenic 40.0%
! AGACCCACTCATTTTCATGA+AGG - tig0026351:61166-61185 Msa1428440:intergenic 40.0%
! AAGATGATGGTGATGAAGTG+AGG - tig0026351:61349-61368 Msa1428440:intergenic 40.0%
TGAGTTTGGAGAATGATGAG+AGG - tig0026351:61397-61416 Msa1428440:intergenic 40.0%
! TGAAGATGGTGATGTGAGTT+TGG - tig0026351:61411-61430 Msa1428440:intergenic 40.0%
!! TTTGTTGGTGATGAACATGG+TGG - tig0026351:61457-61476 Msa1428440:intergenic 40.0%
CTAGCTAAAAGACCAACAAC+AGG - tig0026351:61580-61599 Msa1428440:intergenic 40.0%
!!! CTGTTGTTGGTCTTTTAGCT+AGG + tig0026351:61578-61597 Msa1428440:CDS 40.0%
GCTAGGATTATGAGTGATGA+AGG + tig0026351:61595-61614 Msa1428440:CDS 40.0%
! TATGAGTGATGAAGGTGTGT+TGG + tig0026351:61603-61622 Msa1428440:intron 40.0%
AGTTTCAAGCAAGAAGAGGA+AGG + tig0026351:61706-61725 Msa1428440:intron 40.0%
GTTTCAAGCAAGAAGAGGAA+GGG + tig0026351:61707-61726 Msa1428440:intron 40.0%
AGTGACTTGAGCAACAAACT+TGG + tig0026351:62289-62308 Msa1428440:intron 40.0%
GTGACTTGAGCAACAAACTT+GGG + tig0026351:62290-62309 Msa1428440:intron 40.0%
GCCTTCATTCATTGTAAGGT+TGG - tig0026351:63292-63311 Msa1428440:intergenic 40.0%
! GAGGTAGATTTTGTGGTAGA+AGG + tig0026351:63343-63362 Msa1428440:intron 40.0%
GTCTAAACGTGTGTCTAACT+TGG + tig0026351:63401-63420 Msa1428440:intron 40.0%
!! TGTTTGTTATGTGTAGGCAG+GGG + tig0026351:63428-63447 Msa1428440:intron 40.0%
ACAGACTTTCATAGCCATGA+TGG + tig0026351:63583-63602 Msa1428440:CDS 40.0%
CTGAGTAAAGCTTTCAGAGA+TGG - tig0026351:63631-63650 Msa1428440:intergenic 40.0%
AAGTCAAGTACCAACCATGT+TGG + tig0026351:63995-64014 Msa1428440:intron 40.0%
! ACATCTTTGCTATGCCAACA+TGG - tig0026351:64012-64031 Msa1428440:intergenic 40.0%
!! AAACTGTTCTAGAGAACGTG+TGG + tig0026351:64277-64296 Msa1428440:intron 40.0%
TAGAGAAGGGCAAGACAAAA+AGG + tig0026351:64545-64564 Msa1428440:intron 40.0%
! GCAATCTACGTTTGTTGCTT+CGG + tig0026351:64617-64636 Msa1428440:CDS 40.0%
CTCTCATCTTCTGTCTCTAT+AGG - tig0026351:64650-64669 Msa1428440:intergenic 40.0%
CTATAGAGACAGAAGATGAG+AGG + tig0026351:64648-64667 Msa1428440:CDS 40.0%
AAAACAAGAGATTCGACGCA+TGG + tig0026351:64711-64730 Msa1428440:CDS 40.0%
ATGGCAGACAAAGTAGAAGA+TGG + tig0026351:64742-64761 Msa1428440:exon 40.0%
CAAAGTAGAAGATGGAGGTA+TGG + tig0026351:64750-64769 Msa1428440:exon 40.0%
TCAACAGCTTCCTTTGATAG+AGG - tig0026351:64799-64818 Msa1428440:intergenic 40.0%
! ATTGGTGCTCTTCCTGTTGT+TGG + tig0026351:61565-61584 Msa1428440:CDS 45.0%
GCTGAGTTTAGAAGAAGGGT+TGG + tig0026351:61645-61664 Msa1428440:intron 45.0%
! AGCTGCTACCCTGTTGATTA+TGG + tig0026351:62513-62532 Msa1428440:intron 45.0%
TGGGTATCAATTAGGAGGGT+TGG + tig0026351:62570-62589 Msa1428440:intron 45.0%
GGGTATCAATTAGGAGGGTT+GGG + tig0026351:62571-62590 Msa1428440:intron 45.0%
GGTATCAATTAGGAGGGTTG+GGG + tig0026351:62572-62591 Msa1428440:intron 45.0%
GTATCAATTAGGAGGGTTGG+GGG + tig0026351:62573-62592 Msa1428440:intron 45.0%
AAACCCTGTGGAACGATTCA+GGG + tig0026351:62605-62624 Msa1428440:intron 45.0%
TTACCCTGAATCGTTCCACA+GGG - tig0026351:62611-62630 Msa1428440:intergenic 45.0%
TTTACCCTGAATCGTTCCAC+AGG - tig0026351:62612-62631 Msa1428440:intergenic 45.0%
TACCACCCCACGATCAAATT+TGG + tig0026351:63091-63110 Msa1428440:intron 45.0%
ATCCAAATTTGATCGTGGGG+TGG - tig0026351:63096-63115 Msa1428440:intergenic 45.0%
! TGTTGTTGGCTAGCTGCTAT+TGG + tig0026351:63482-63501 Msa1428440:CDS 45.0%
TGCAGGTCTTCTCAAAACTG+AGG + tig0026351:63505-63524 Msa1428440:CDS 45.0%
!! GAGGAGATTTTGGAAGGAGT+CGG + tig0026351:63524-63543 Msa1428440:CDS 45.0%
!! AGATTTTGGAAGGAGTCGGA+AGG + tig0026351:63528-63547 Msa1428440:CDS 45.0%
CTCTCTTGCTTCATCCATCA+TGG - tig0026351:63600-63619 Msa1428440:intergenic 45.0%
!! CATGATGGATGAAGCAAGAG+AGG + tig0026351:63598-63617 Msa1428440:CDS 45.0%
! CTTTGCTATGCCAACATGGT+TGG - tig0026351:64008-64027 Msa1428440:intergenic 45.0%
! CTACGTTTGTTGCTTCGGAA+AGG + tig0026351:64622-64641 Msa1428440:CDS 45.0%
TCGACGCATGGTTAAAGAGA+TGG + tig0026351:64723-64742 Msa1428440:CDS 45.0%
GCAGACAAAGTAGAAGATGG+AGG + tig0026351:64745-64764 Msa1428440:exon 45.0%
TGCTGCTAAGCCTCTATCAA+AGG + tig0026351:64786-64805 Msa1428440:three_prime_UTR 45.0%
AGGCTCAAACACCTTGCTTT+AGG - tig0026351:64926-64945 Msa1428440:intergenic 45.0%
!! AGCAAGGTGTTTGAGCCTTT+TGG + tig0026351:64928-64947 Msa1428440:three_prime_UTR 45.0%
!! TGAGCCTTTTGGCTACTCAT+AGG + tig0026351:64939-64958 Msa1428440:three_prime_UTR 45.0%
!! GAGCCTTTTGGCTACTCATA+GGG + tig0026351:64940-64959 Msa1428440:three_prime_UTR 45.0%
!! AGCCTTTTGGCTACTCATAG+GGG + tig0026351:64941-64960 Msa1428440:three_prime_UTR 45.0%
TTCCCCTATGAGTAGCCAAA+AGG - tig0026351:64946-64965 Msa1428440:intergenic 45.0%
!! GTTGGTGATGAACATGGTGG+TGG - tig0026351:61454-61473 Msa1428440:intergenic 50.0%
GAAACCCTGTGGAACGATTC+AGG + tig0026351:62604-62623 Msa1428440:intron 50.0%
TTTGATCGTGGGGTGGTACT+TGG - tig0026351:63089-63108 Msa1428440:intergenic 50.0%
TTATGTGTAGGCAGGGGATC+AGG + tig0026351:63434-63453 Msa1428440:intron 50.0%
TCGAACCTCCATTGGAACAG+CGG - tig0026351:64579-64598 Msa1428440:intergenic 50.0%
! TTCTCGACTCGAACCTCCAT+TGG - tig0026351:64587-64606 Msa1428440:intergenic 50.0%
GATAGAGGCTTAGCAGCATC+TGG - tig0026351:64784-64803 Msa1428440:intergenic 50.0%
!! GATGAACATGGTGGTGGCTG+TGG - tig0026351:61448-61467 Msa1428440:intergenic 55.0%
! TGGCTAGCTGCTATTGGTGC+AGG + tig0026351:63488-63507 Msa1428440:CDS 55.0%
TGGAAGGAGTCGGAAGGCTT+CGG + tig0026351:63534-63553 Msa1428440:CDS 55.0%
TCCTGCTCTTTCGGCCTGTT+TGG + tig0026351:64207-64226 Msa1428440:intron 55.0%
TCCAAACAGGCCGAAAGAGC+AGG - tig0026351:64211-64230 Msa1428440:intergenic 55.0%
CGAACCTCCATTGGAACAGC+GGG - tig0026351:64578-64597 Msa1428440:intergenic 55.0%
ATTAGGAGGGTTGGGGGTCC+AGG + tig0026351:62579-62598 Msa1428440:intron 60.0%
TTAGGAGGGTTGGGGGTCCA+GGG + tig0026351:62580-62599 Msa1428440:intron 60.0%
CGTTCCACAGGGTTTCACCC+TGG - tig0026351:62600-62619 Msa1428440:intergenic 60.0%
TGTAGGCAGGGGATCAGGCA+GGG + tig0026351:63439-63458 Msa1428440:intron 60.0%
TGCACCTCCCGCTGTTCCAA+TGG + tig0026351:64568-64587 Msa1428440:CDS 60.0%
ACCTCCCGCTGTTCCAATGG+AGG + tig0026351:64571-64590 Msa1428440:CDS 60.0%
ACCTCCATTGGAACAGCGGG+AGG - tig0026351:64575-64594 Msa1428440:intergenic 60.0%
GGGTCCAGGGTGAAACCCTG+TGG + tig0026351:62593-62612 Msa1428440:intron 65.0%
GTGTAGGCAGGGGATCAGGC+AGG + tig0026351:63438-63457 Msa1428440:intron 65.0%
Chromosome Type Strat End Strand Name
tig0026351 gene 60947 65153 60947 ID=Msa1428440;Name=Msa1428440
tig0026351 mRNA 60947 65153 60947 ID=Msa1428440-mRNA-1;Parent=Msa1428440;Name=Msa1428440-mRNA-1;_AED=0.17;_eAED=0.19;_QI=0|0.33|0.5|0.75|1|1|4|396|204
tig0026351 exon 60947 61009 60947 ID=Msa1428440-mRNA-1:exon:5974;Parent=Msa1428440-mRNA-1
tig0026351 exon 61451 61616 61451 ID=Msa1428440-mRNA-1:exon:5975;Parent=Msa1428440-mRNA-1
tig0026351 exon 63444 63619 63444 ID=Msa1428440-mRNA-1:exon:5976;Parent=Msa1428440-mRNA-1
tig0026351 exon 64548 65153 64548 ID=Msa1428440-mRNA-1:exon:5977;Parent=Msa1428440-mRNA-1
tig0026351 CDS 60947 61009 60947 ID=Msa1428440-mRNA-1:cds;Parent=Msa1428440-mRNA-1
tig0026351 CDS 61451 61616 61451 ID=Msa1428440-mRNA-1:cds;Parent=Msa1428440-mRNA-1
tig0026351 CDS 63444 63619 63444 ID=Msa1428440-mRNA-1:cds;Parent=Msa1428440-mRNA-1
tig0026351 CDS 64548 64757 64548 ID=Msa1428440-mRNA-1:cds;Parent=Msa1428440-mRNA-1
tig0026351 three_prime_UTR 64758 65153 64758 ID=Msa1428440-mRNA-1:three_prime_utr;Parent=Msa1428440-mRNA-1
Gene Sequence

>Msa1428440

ATGGAAGCAAGAAACTTCATCAATTCATGGAACCTGGTGAATTGCAACAACAAAGGACATGAACCACCACCATGTTCATCACCAACAAAACAACAAACTTCAAAACCCACTACAAATTTCACCATTAAAGCTTACATGGAGAATCCAAACTCATTTTCAAATGTTGTTAGCAAAGTTATTGGTGCTCTTCCTGTTGTTGGTCTTTTAGCTAGGATTATGAGTGATGAAGGCAGGGGATCAGGCAGGGATCCTATCTATGTTCTGCTATGTTGTTGGCTAGCTGCTATTGGTGCAGGTCTTCTCAAAACTGAGGAGATTTTGGAAGGAGTCGGAAGGCTTCGGATCTCAAACGACATTGAATTTGAGGAACAGACTTTCATAGCCATGATGGATGAAGCAAGAGAGAGAAGGGCAAGACAAAAAGGTGCACCTCCCGCTGTTCCAATGGAGGTTCGAGTCGAGAAAGCTCTTGATGCAATCTACGTTTGTTGCTTCGGAAAGGATCCTATAGAGACAGAAGATGAGAGGTTGCTGAGTACAATACTTAGTTCAGTTTTCCATCTGTTCAAAAACAAGAGATTCGACGCATGGTTAAAGAGATGGCAGACAAAGTAG

Protein sequence

>Msa1428440

MEARNFINSWNLVNCNNKGHEPPPCSSPTKQQTSKPTTNFTIKAYMENPNSFSNVVSKVIGALPVVGLLARIMSDEGRGSGRDPIYVLLCCWLAAIGAGLLKTEEILEGVGRLRISNDIEFEEQTFIAMMDEARERRARQKGAPPAVPMEVRVEKALDAIYVCCFGKDPIETEDERLLSTILSSVFHLFKNKRFDAWLKRWQTK*