AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1405470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1405470 MtrunA17_Chr1g0187091 96.078 561 22 0 1 561 1 561 0.0 1122
Msa1405470 MtrunA17_Chr5g0395051 34.983 303 134 8 207 462 94 380 1.44e-32 133
Msa1405470 MtrunA17_Chr5g0395051 49.038 104 47 1 1 104 9 106 1.42e-22 102
Msa1405470 MtrunA17_Chr6g0468301 46.154 104 50 1 1 104 9 106 5.37e-22 92.8
Msa1405470 MtrunA17_Chr6g0468291 43.478 92 49 2 335 424 3 93 3.72e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 144 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCTGTATGCTTCTGTTTC+TGG 0.077711 tig0023138:+67979 Msa1405470:five_prime_UTR
CTCATTTGATGGATAATTTA+AGG 0.100332 tig0023138:+68468 Msa1405470:five_prime_UTR
TTAAATAAACATACCTATTT+AGG 0.154959 tig0023138:+73079 Msa1405470:three_prime_UTR
AACAAATCTTCTACTATTTC+AGG 0.180626 tig0023138:+69761 Msa1405470:CDS
GATGGTATTGGCTTGGGATT+TGG 0.227323 tig0023138:+68593 Msa1405470:five_prime_UTR
ACAATATGTGGACTGAAAAT+TGG 0.244513 tig0023138:-70862 None:intergenic
ATAAGAAAATGATAGGTTTC+TGG 0.247563 tig0023138:+72861 Msa1405470:three_prime_UTR
GAATCTCTCAATCTCGAAAA+AGG 0.270101 tig0023138:-71285 None:intergenic
GCCAGGATCTGGTGATAATT+TGG 0.270512 tig0023138:+69595 Msa1405470:intron
ATGGTATTGGCTTGGGATTT+GGG 0.285962 tig0023138:+68594 Msa1405470:five_prime_UTR
ACAGAAAGGAATACCTAAAT+AGG 0.287051 tig0023138:-73092 None:intergenic
AATGAGTTGATTGTCATAAC+TGG 0.290846 tig0023138:+68390 Msa1405470:five_prime_UTR
TTAAGACTGAAACCTTTATC+TGG 0.299755 tig0023138:-69043 None:intergenic
ATGACTTCAAAACCAGTCTT+TGG 0.306670 tig0023138:-68893 None:intergenic
CCTGTATCATGTTCTTGATA+TGG 0.316401 tig0023138:-69298 None:intergenic
ATCCTCTATCTGAAATAGTT+TGG 0.324431 tig0023138:+69017 Msa1405470:CDS
TCTTGATATGGTGTATATTC+TGG 0.346161 tig0023138:-69286 None:intergenic
TGGCCTGATGGTATTGGCTT+GGG 0.347396 tig0023138:+68587 Msa1405470:five_prime_UTR
TGTTTGTTGGCATTGTTTGA+TGG 0.368003 tig0023138:-71346 None:intergenic
TTGATGAGACATTCTTGTTC+CGG 0.369355 tig0023138:-70901 None:intergenic
AGCTAAAATATCTGAGATAA+TGG 0.370067 tig0023138:+69730 Msa1405470:CDS
TCGGGTTGGCCTGATGGTAT+TGG 0.371402 tig0023138:+68581 Msa1405470:five_prime_UTR
CCTTCTTTGTAATGTTTCCT+TGG 0.372511 tig0023138:-70243 None:intergenic
TCTGTGAAATACTCATTTGA+TGG 0.376868 tig0023138:+68457 Msa1405470:five_prime_UTR
AAAGTACACACCTCTTTGTT+TGG 0.378695 tig0023138:-67803 None:intergenic
ATGAAACATCACATTAATAT+AGG 0.381042 tig0023138:-68419 None:intergenic
ACATAAAAGATTCCAGTCTA+AGG 0.388544 tig0023138:-68207 None:intergenic
ATAGTTTGGACTCCAGATAA+AGG 0.389342 tig0023138:+69031 Msa1405470:CDS
TGCTGGAGGAACATCTGATT+TGG 0.391359 tig0023138:+69631 Msa1405470:CDS
TTTGAAAACTATCATAATCC+TGG 0.393605 tig0023138:+70567 Msa1405470:CDS
GTAAATTACCAACTGGACTT+TGG 0.394116 tig0023138:-70173 None:intergenic
TCAAGATGAGGAGAAGTCTT+TGG 0.394857 tig0023138:+70758 Msa1405470:CDS
TTGGAGAAAATTAACTCTGC+TGG 0.405206 tig0023138:+69614 Msa1405470:CDS
TGACTCTCATTCTTATTGTA+TGG 0.406960 tig0023138:-70537 None:intergenic
ATTCTCTTCAGTGTCAAGTT+AGG 0.410731 tig0023138:+68647 Msa1405470:five_prime_UTR
TATTTCAGATAGAGGATCAT+TGG 0.411235 tig0023138:-69011 None:intergenic
GAACACATGATTGAAGATAA+AGG 0.411777 tig0023138:+70327 Msa1405470:CDS
ATGTTTGTTTCACGTGATCA+TGG 0.420997 tig0023138:+68048 Msa1405470:five_prime_UTR
AAAATATTGTGAATTTAGTA+AGG 0.424454 tig0023138:-68089 None:intergenic
GTGAGATGCATCTTATTTCA+AGG 0.425141 tig0023138:-68556 None:intergenic
TGGTAGACTATTCTGTTTGT+TGG 0.430093 tig0023138:-71359 None:intergenic
TCCATGTTTGCAAAGAGGTT+AGG 0.431116 tig0023138:+71321 Msa1405470:CDS
TCATGTCAATTTCCTTAGAC+TGG 0.431825 tig0023138:+68195 Msa1405470:five_prime_UTR
TTGGCCTGATGGTATTGGCT+TGG 0.432109 tig0023138:+68586 Msa1405470:five_prime_UTR
ATCATCCGGCATTAATCATT+CGG 0.432649 tig0023138:+70377 Msa1405470:CDS
CGATGTTGAACCTAGTAGTA+TGG 0.433354 tig0023138:+69111 Msa1405470:CDS
TCATAGCTCATTCATGAACT+TGG 0.436526 tig0023138:+70701 Msa1405470:CDS
GGAGAATTTAATGAACCATT+GGG 0.439177 tig0023138:+69667 Msa1405470:CDS
GGCCATCGAAGGTGGCGATC+AGG 0.439496 tig0023138:-70798 None:intergenic
TGAACTTGTAAATTACCAAC+TGG 0.441384 tig0023138:-70180 None:intergenic
AGCTGCTTCAATTTCAATGC+AGG 0.443120 tig0023138:-69711 None:intergenic
GTGTTCTTCTTTACATCCTC+AGG 0.443827 tig0023138:+70959 Msa1405470:CDS
GTCCAAACTATTTCAGATAG+AGG 0.446372 tig0023138:-69019 None:intergenic
AGGAGAATTTAATGAACCAT+TGG 0.446595 tig0023138:+69666 Msa1405470:CDS
TTCCAGAAACAGAAGCATAC+AGG 0.449645 tig0023138:-67981 None:intergenic
TTGACGCGTTAATGCTTCAT+AGG 0.450951 tig0023138:+68352 Msa1405470:five_prime_UTR
CTTCTCATCTTTAAGACCAA+TGG 0.453090 tig0023138:-71217 None:intergenic
TTGTAATGTTTCCTTGGTGA+AGG 0.453555 tig0023138:-70237 None:intergenic
AAAGAGGCTTCTTCTTCCAT+TGG 0.453603 tig0023138:+71201 Msa1405470:CDS
CCACCTTCGATGGCCTTACA+AGG 0.455789 tig0023138:+70806 Msa1405470:CDS
GCATCGATACTTCTTATTGA+AGG 0.456704 tig0023138:+68243 Msa1405470:five_prime_UTR
GGAACATATTTGATATCATC+CGG 0.456936 tig0023138:+70363 Msa1405470:CDS
AATTTACAAGTTCATCAAGA+TGG 0.458602 tig0023138:+70189 Msa1405470:CDS
CCAAGGAAACATTACAAAGA+AGG 0.463419 tig0023138:+70243 Msa1405470:CDS
TTGGTTTCAAACATGACTAA+AGG 0.464068 tig0023138:+70720 Msa1405470:CDS
TGCACTAAAACGTCTTCTAC+AGG 0.464095 tig0023138:-69175 None:intergenic
GATAAAGGTTCTAATCCTCT+TGG 0.465705 tig0023138:+70342 Msa1405470:CDS
GGAACATCTGATTTGGCAAA+TGG 0.468310 tig0023138:+69638 Msa1405470:CDS
GGACTGAAAATTGGATTTGA+AGG 0.473417 tig0023138:-70853 None:intergenic
TCTGGAGCTTGACCCTTGTA+AGG 0.474736 tig0023138:-70819 None:intergenic
ACAATATGCTGATAACCAAT+TGG 0.476134 tig0023138:+71140 Msa1405470:CDS
TGATTTGGCAAATGGTCAAA+AGG 0.486780 tig0023138:+69646 Msa1405470:CDS
GTGCTCCTACTCAAGGTCTC+AGG 0.488647 tig0023138:+68620 Msa1405470:five_prime_UTR
CTTGAGTACTCAGCAGTAGA+AGG 0.489690 tig0023138:-68842 None:intergenic
ACCAACAATTTCCGACAGAA+AGG 0.489958 tig0023138:-73106 None:intergenic
TGTTTGTTTCACGTGATCAT+GGG 0.491716 tig0023138:+68049 Msa1405470:five_prime_UTR
CAAACTTTCAGCTGTAAAGC+AGG 0.492380 tig0023138:+70432 Msa1405470:CDS
AAGAGTGACGTTTCTTCGAC+AGG 0.500026 tig0023138:+69220 Msa1405470:CDS
TCACACTCGGGTTGGCCTGA+TGG 0.502802 tig0023138:+68575 Msa1405470:five_prime_UTR
GAAACATTACAAAGAAGGCT+TGG 0.503191 tig0023138:+70248 Msa1405470:CDS
CTCAAAACACTGACAATATG+TGG 0.503790 tig0023138:-70874 None:intergenic
CTTCGACAGGTACTCCTGCT+AGG 0.511003 tig0023138:+69233 Msa1405470:CDS
CACAAATATTCTTCTCCCAA+TGG 0.514033 tig0023138:-69682 None:intergenic
AATATCTGAGATAATGGAAG+AGG 0.514653 tig0023138:+69736 Msa1405470:CDS
ATTGAGAGATTCAGAGGCAA+TGG 0.519119 tig0023138:+71296 Msa1405470:CDS
AATCCCAAGCCAATACCATC+AGG 0.525771 tig0023138:-68590 None:intergenic
CATTGGTCTTAAAGATGAGA+AGG 0.529065 tig0023138:+71218 Msa1405470:CDS
TGGTGTATATTCTGGAAAGA+TGG 0.529676 tig0023138:-69278 None:intergenic
ATTTACAAGTTCATCAAGAT+GGG 0.530667 tig0023138:+70190 Msa1405470:CDS
TTATTCTAGTCAATGTCATA+AGG 0.530823 tig0023138:+68922 Msa1405470:CDS
TGGGAGTGTGCTCCTACTCA+AGG 0.531589 tig0023138:+68613 Msa1405470:five_prime_UTR
AAGAAAATGAAACCAAAGAC+TGG 0.532411 tig0023138:+68881 Msa1405470:exon
TCGCTTGTTGAATTCCTAGC+AGG 0.535881 tig0023138:-69247 None:intergenic
CCATATCAAGAACATGATAC+AGG 0.536521 tig0023138:+69298 Msa1405470:CDS
ATCCTGATCGCCACCTTCGA+TGG 0.538722 tig0023138:+70796 Msa1405470:CDS
TAACATCATCTCATTGACCT+TGG 0.540503 tig0023138:-70514 None:intergenic
TATGAAAGAATATTAGTACA+TGG 0.541481 tig0023138:-67951 None:intergenic
ACCTAACCTCTTTGCAAACA+TGG 0.543122 tig0023138:-71322 None:intergenic
AAGTATACATAAATTGACTA+AGG 0.544426 tig0023138:-67874 None:intergenic
AATAAGATGCATCTCACACT+CGG 0.548373 tig0023138:+68562 Msa1405470:five_prime_UTR
AATATAGAATAGAAAAGATA+CGG 0.550149 tig0023138:-68018 None:intergenic
TTCGAGATTGAGAGATTCAG+AGG 0.550691 tig0023138:+71290 Msa1405470:CDS
CTAAGGAAATTGACATGACT+AGG 0.551663 tig0023138:-68190 None:intergenic
AGAGCAAGAACCATACTACT+AGG 0.554225 tig0023138:-69121 None:intergenic
AATGGAATTGTATATTGGGT+AGG 0.554982 tig0023138:-72981 None:intergenic
ATTTAGGTATTCCTTTCTGT+CGG 0.556516 tig0023138:+73095 Msa1405470:three_prime_UTR
AGATGGGTCTAAACTTAGCA+TGG 0.563633 tig0023138:+70206 Msa1405470:CDS
TTGCAAACTGAGTCAAGTGC+AGG 0.567039 tig0023138:+68950 Msa1405470:CDS
TGTACTGCAGGAAGACATCA+TGG 0.567554 tig0023138:+72765 Msa1405470:intron
TTCAACATCGCGCAAAAGCG+AGG 0.569210 tig0023138:-69098 None:intergenic
TGGTTTCCATGTTTGCAAAG+AGG 0.574375 tig0023138:+71316 Msa1405470:CDS
ACAAGAATGTCTCATCAAGT+AGG 0.578856 tig0023138:+70906 Msa1405470:CDS
TGAGCTATGATGATTAACAT+AGG 0.579724 tig0023138:-70688 None:intergenic
GACCCTTGTAAGGCCATCGA+AGG 0.580322 tig0023138:-70809 None:intergenic
TTTGCGCATATAACAGCAAG+AGG 0.582464 tig0023138:-69199 None:intergenic
ATTGGTCTTAAAGATGAGAA+GGG 0.585207 tig0023138:+71219 Msa1405470:CDS
CCTTGTAAGGCCATCGAAGG+TGG 0.590280 tig0023138:-70806 None:intergenic
GAGAAAATTAACTCTGCTGG+AGG 0.604426 tig0023138:+69617 Msa1405470:CDS
CAGATCAACCAAAGTCCAGT+TGG 0.604525 tig0023138:+70165 Msa1405470:CDS
GATGCATCTCACACTCGGGT+TGG 0.606974 tig0023138:+68567 Msa1405470:five_prime_UTR
ATGAGTTGATTGTCATAACT+GGG 0.610790 tig0023138:+68391 Msa1405470:five_prime_UTR
AATTTGAGAAAATGAAGTAA+CGG 0.616414 tig0023138:-68319 None:intergenic
GCGTCCGATCCGATGTGTGT+CGG 0.620727 tig0023138:+68267 Msa1405470:five_prime_UTR
CAGCAACGTTAAATGAGTTG+AGG 0.626104 tig0023138:-72799 None:intergenic
GGATACTAGTGTTGACAACA+TGG 0.626835 tig0023138:+70269 Msa1405470:CDS
AAGAAGAACACCGTCTGCAG+AGG 0.634486 tig0023138:-70947 None:intergenic
CAAGCAATAGCCTCTGCAGA+CGG 0.634882 tig0023138:+70937 Msa1405470:CDS
GTTTGTTTCACGTGATCATG+GGG 0.636921 tig0023138:+68050 Msa1405470:five_prime_UTR
AGATGAGAAGGGAAACAATG+AGG 0.641689 tig0023138:+71230 Msa1405470:CDS
CTCACAATCTAGTCAAGATG+AGG 0.644826 tig0023138:+70746 Msa1405470:CDS
ATTACGACACCGACACACAT+CGG 0.645224 tig0023138:-68276 None:intergenic
TCAAGCCATGTTTACCTGTG+TGG 0.651284 tig0023138:-71379 None:intergenic
CACCTTCGATGGCCTTACAA+GGG 0.654668 tig0023138:+70807 Msa1405470:CDS
GACACCGACACACATCGGAT+CGG 0.654809 tig0023138:-68271 None:intergenic
TATTTCCTAACCAAACAAAG+AGG 0.654876 tig0023138:+67793 None:intergenic
TCGAACCTGAGACCTTGAGT+AGG 0.655490 tig0023138:-68625 None:intergenic
ATAAGATGCATCTCACACTC+GGG 0.659150 tig0023138:+68563 Msa1405470:five_prime_UTR
TGTTTCTGGAAATTCTACCA+CGG 0.659691 tig0023138:+67993 Msa1405470:five_prime_UTR
GTCTTCTACAGGTTTATCTG+TGG 0.662607 tig0023138:-69164 None:intergenic
GATATCAAATATGTTCCAAG+AGG 0.664662 tig0023138:-70357 None:intergenic
AACAGAATAGTCTACCACAC+AGG 0.676350 tig0023138:+71365 Msa1405470:exon
ATAGAAAAGATACGGTACCG+TGG 0.710931 tig0023138:-68010 None:intergenic
TGGAACAAAATCCTTCACCA+AGG 0.714111 tig0023138:+70226 Msa1405470:CDS
TACTAGTGTTGACAACATGG+TGG 0.817206 tig0023138:+70272 Msa1405470:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAGTATTTTTTTTTTTGT+TGG + tig0023138:71940-71959 Msa1405470:intron 10.0%
!!! TTAGTATTTTTTTTTTTGTT+GGG + tig0023138:71941-71960 Msa1405470:intron 10.0%
!! AATATAGAATAGAAAAGATA+CGG - tig0023138:68021-68040 None:intergenic 15.0%
!! AAAATATTGTGAATTTAGTA+AGG - tig0023138:68092-68111 None:intergenic 15.0%
!! AAATTACTTGATTGAATTAT+AGG - tig0023138:68736-68755 None:intergenic 15.0%
!! AGATATAATTCAATAACAAA+TGG - tig0023138:72135-72154 None:intergenic 15.0%
!! AATATCTATAATCGAATAAA+GGG - tig0023138:72657-72676 None:intergenic 15.0%
!! AAATATCTATAATCGAATAA+AGG - tig0023138:72658-72677 None:intergenic 15.0%
!! ATCAAAAATAAGAAAATGAT+AGG + tig0023138:72854-72873 Msa1405470:three_prime_UTR 15.0%
!! AAATAGAAACAATTCAAAAA+TGG - tig0023138:73002-73021 None:intergenic 15.0%
!! TTAAATAAACATACCTATTT+AGG + tig0023138:73079-73098 Msa1405470:three_prime_UTR 15.0%
!!! CTCTTTCAATTTTCTATTTT+CGG + tig0023138:67835-67854 Msa1405470:five_prime_UTR 20.0%
!! AAGTATACATAAATTGACTA+AGG - tig0023138:67877-67896 None:intergenic 20.0%
!! TATGAAAGAATATTAGTACA+TGG - tig0023138:67954-67973 None:intergenic 20.0%
!! AATTTGAGAAAATGAAGTAA+CGG - tig0023138:68322-68341 None:intergenic 20.0%
!! ATGAAACATCACATTAATAT+AGG - tig0023138:68422-68441 None:intergenic 20.0%
!! AATTCAATCAAGTAATTTGA+TGG + tig0023138:68738-68757 Msa1405470:intron 20.0%
!!! AAGGTTTTAAAGGAAAAAAT+TGG - tig0023138:69550-69569 None:intergenic 20.0%
!! ATCATGATAGTATCTTAAAA+TGG - tig0023138:69824-69843 None:intergenic 20.0%
!!! TTTAAGATACTATCATGATT+TGG + tig0023138:69825-69844 Msa1405470:intron 20.0%
!!! ATATAAATTTTCCTCAATCA+TGG + tig0023138:69886-69905 Msa1405470:intron 20.0%
!! TAAAAATTAATAACTTCAGC+AGG - tig0023138:70077-70096 None:intergenic 20.0%
!!! GGATTTGTTTTTATTATCAT+TGG - tig0023138:70496-70515 None:intergenic 20.0%
!! TGATAATAAAAACAAATCCA+AGG + tig0023138:70497-70516 Msa1405470:CDS 20.0%
!! TTTACAAAATAGAATCAGTA+AGG + tig0023138:71047-71066 Msa1405470:intron 20.0%
!! ATGATTGTTATCTGAAAAAT+AGG + tig0023138:71442-71461 Msa1405470:intron 20.0%
!! AATATGACATCACAAAAAAA+TGG - tig0023138:72240-72259 None:intergenic 20.0%
!!! TTACGGTATTGAATAATTTT+TGG - tig0023138:72525-72544 None:intergenic 20.0%
!! TATTACAATTTACATGAACA+TGG + tig0023138:72686-72705 Msa1405470:intron 20.0%
!! CAAAAATGGAATTGTATATT+GGG - tig0023138:72988-73007 None:intergenic 20.0%
!! TCAAAAATGGAATTGTATAT+TGG - tig0023138:72989-73008 None:intergenic 20.0%
!! CTCATTTGATGGATAATTTA+AGG + tig0023138:68468-68487 Msa1405470:five_prime_UTR 25.0%
! TTGGAACAATATTTCATTTC+AGG + tig0023138:68818-68837 Msa1405470:intron 25.0%
! TTATTCTAGTCAATGTCATA+AGG + tig0023138:68922-68941 Msa1405470:CDS 25.0%
! ATTAATTAAAGTGACACTAG+TGG - tig0023138:69510-69529 None:intergenic 25.0%
!!! TTGAGCAAAAAAGGTTTTAA+AGG - tig0023138:69560-69579 None:intergenic 25.0%
!! AGCTAAAATATCTGAGATAA+TGG + tig0023138:69730-69749 Msa1405470:CDS 25.0%
! AACAAATCTTCTACTATTTC+AGG + tig0023138:69761-69780 Msa1405470:CDS 25.0%
! TTTAGATATGCAAAAGAGAA+TGG - tig0023138:70115-70134 None:intergenic 25.0%
! AATTTACAAGTTCATCAAGA+TGG + tig0023138:70189-70208 Msa1405470:CDS 25.0%
! ATTTACAAGTTCATCAAGAT+GGG + tig0023138:70190-70209 Msa1405470:CDS 25.0%
! CATTAATCATTCGGAAAAAA+TGG + tig0023138:70386-70405 Msa1405470:CDS 25.0%
! TTTGAAAACTATCATAATCC+TGG + tig0023138:70567-70586 Msa1405470:CDS 25.0%
!! TTGAAGGAATTTTTAATCTC+TGG - tig0023138:70840-70859 None:intergenic 25.0%
! TGGCTATTGAGAAAATTTAT+AGG - tig0023138:70990-71009 None:intergenic 25.0%
! CAGTAATTCAAATGAGAAAT+TGG - tig0023138:71099-71118 None:intergenic 25.0%
!!! GAATTGTTTTATCAACAAAG+AGG + tig0023138:71185-71204 Msa1405470:CDS 25.0%
!!! CACATTATTGATTTACTTCA+TGG - tig0023138:71422-71441 None:intergenic 25.0%
! TTGATTCTATGACAATAAGA+AGG + tig0023138:71569-71588 Msa1405470:intron 25.0%
! AAAAATGGATATCTATGTGT+TGG - tig0023138:72225-72244 None:intergenic 25.0%
!! ATGTCATATTCATCTTTTTG+TGG + tig0023138:72250-72269 Msa1405470:intron 25.0%
!! ATATTCATCTTTTTGTGGTT+TGG + tig0023138:72255-72274 Msa1405470:intron 25.0%
!! GACATGTGAAAGTATATATT+AGG + tig0023138:72277-72296 Msa1405470:intron 25.0%
! TTTGATCTGCTAAAAAATGA+AGG + tig0023138:72305-72324 Msa1405470:intron 25.0%
! TTTATTTGTAAAACTGCTTC+AGG + tig0023138:72359-72378 Msa1405470:intron 25.0%
! TTATTTGTAAAACTGCTTCA+GGG + tig0023138:72360-72379 Msa1405470:intron 25.0%
!!! GTTTTAGAAAACTTGTATGT+GGG - tig0023138:72464-72483 None:intergenic 25.0%
!!! TGTTTTAGAAAACTTGTATG+TGG - tig0023138:72465-72484 None:intergenic 25.0%
!! CAACACAAGACAAAATTTTA+CGG - tig0023138:72542-72561 None:intergenic 25.0%
!!! GGATATCAACTTTTTTGTTT+TGG + tig0023138:72707-72726 Msa1405470:intron 25.0%
!! TTTTCTGTCATATCTTTAGT+TGG - tig0023138:72833-72852 None:intergenic 25.0%
! ATAAGAAAATGATAGGTTTC+TGG + tig0023138:72861-72880 Msa1405470:three_prime_UTR 25.0%
!!! ATCAAGACTTTTTTCAACAA+GGG - tig0023138:73040-73059 None:intergenic 25.0%
ACATAAAAGATTCCAGTCTA+AGG - tig0023138:68210-68229 None:intergenic 30.0%
!! AATGAGTTGATTGTCATAAC+TGG + tig0023138:68390-68409 Msa1405470:five_prime_UTR 30.0%
!! ATGAGTTGATTGTCATAACT+GGG + tig0023138:68391-68410 Msa1405470:five_prime_UTR 30.0%
TCTGTGAAATACTCATTTGA+TGG + tig0023138:68457-68476 Msa1405470:five_prime_UTR 30.0%
! AATCAAAATTAGCCTGTGTA+GGG - tig0023138:68800-68819 None:intergenic 30.0%
AAGAAAATGAAACCAAAGAC+TGG + tig0023138:68881-68900 Msa1405470:exon 30.0%
TATTTCAGATAGAGGATCAT+TGG - tig0023138:69014-69033 None:intergenic 30.0%
! ATCCTCTATCTGAAATAGTT+TGG + tig0023138:69017-69036 Msa1405470:CDS 30.0%
TTAAGACTGAAACCTTTATC+TGG - tig0023138:69046-69065 None:intergenic 30.0%
TCTTGATATGGTGTATATTC+TGG - tig0023138:69289-69308 None:intergenic 30.0%
GGTAAATATAACATCCCTTA+TGG + tig0023138:69319-69338 Msa1405470:intron 30.0%
ACATCATGATTGAGCAAAAA+AGG - tig0023138:69569-69588 None:intergenic 30.0%
AGGAGAATTTAATGAACCAT+TGG + tig0023138:69666-69685 Msa1405470:CDS 30.0%
GGAGAATTTAATGAACCATT+GGG + tig0023138:69667-69686 Msa1405470:CDS 30.0%
!! AATATCTGAGATAATGGAAG+AGG + tig0023138:69736-69755 Msa1405470:CDS 30.0%
! TGCTGTCATAATTGATTCTT+TGG + tig0023138:69788-69807 Msa1405470:intron 30.0%
!! GGATTTATTTTCCATGATTG+AGG - tig0023138:69900-69919 None:intergenic 30.0%
CTTTGATATGCAGTGTTAAT+TGG - tig0023138:69921-69940 None:intergenic 30.0%
CAATTAACACTGCATATCAA+AGG + tig0023138:69919-69938 Msa1405470:intron 30.0%
TGAACTTGTAAATTACCAAC+TGG - tig0023138:70183-70202 None:intergenic 30.0%
GAACACATGATTGAAGATAA+AGG + tig0023138:70327-70346 Msa1405470:CDS 30.0%
GATATCAAATATGTTCCAAG+AGG - tig0023138:70360-70379 None:intergenic 30.0%
GGAACATATTTGATATCATC+CGG + tig0023138:70363-70382 Msa1405470:CDS 30.0%
! TTTTTCCGAATGATTAATGC+CGG - tig0023138:70385-70404 None:intergenic 30.0%
TGACTCTCATTCTTATTGTA+TGG - tig0023138:70540-70559 None:intergenic 30.0%
! TCATAATCCTGGATTGTTTT+TGG + tig0023138:70578-70597 Msa1405470:CDS 30.0%
TGAGCTATGATGATTAACAT+AGG - tig0023138:70691-70710 None:intergenic 30.0%
TTGGTTTCAAACATGACTAA+AGG + tig0023138:70720-70739 Msa1405470:CDS 30.0%
! ACAATATGTGGACTGAAAAT+TGG - tig0023138:70865-70884 None:intergenic 30.0%
!! GTGATATTTTTCAGTGTTCA+TGG - tig0023138:71010-71029 None:intergenic 30.0%
TTCTCATTTGAATTACTGCA+AGG + tig0023138:71101-71120 Msa1405470:intron 30.0%
ACAATATGCTGATAACCAAT+TGG + tig0023138:71140-71159 Msa1405470:CDS 30.0%
! TTTTAGTCTCAATGACCAAT+TGG - tig0023138:71158-71177 None:intergenic 30.0%
!! ATTGGTCTTAAAGATGAGAA+GGG + tig0023138:71219-71238 Msa1405470:CDS 30.0%
ACTTTATTAAGTCTGTGTTG+TGG + tig0023138:71999-72018 Msa1405470:intron 30.0%
ATATGACTTTATCCTTCAAG+TGG + tig0023138:72089-72108 Msa1405470:intron 30.0%
ACATATGTGATACAACACTT+TGG - tig0023138:72175-72194 None:intergenic 30.0%
!!! TACGATTTTTTGTGGACAAA+AGG - tig0023138:72497-72516 None:intergenic 30.0%
!!! TGGTCTTATACGATTTTTTG+TGG - tig0023138:72505-72524 None:intergenic 30.0%
!!! ACTTTTTTCAACAAGTCTGA+AGG - tig0023138:72591-72610 None:intergenic 30.0%
AATGGAATTGTATATTGGGT+AGG - tig0023138:72984-73003 None:intergenic 30.0%
!!! TCAAGACTTTTTTCAACAAG+GGG - tig0023138:73039-73058 None:intergenic 30.0%
!!! CATCAAGACTTTTTTCAACA+AGG - tig0023138:73041-73060 None:intergenic 30.0%
ACAGAAAGGAATACCTAAAT+AGG - tig0023138:73095-73114 None:intergenic 30.0%
ATTTAGGTATTCCTTTCTGT+CGG + tig0023138:73095-73114 Msa1405470:three_prime_UTR 30.0%
AAAGTACACACCTCTTTGTT+TGG - tig0023138:67806-67825 None:intergenic 35.0%
!! TGTTTCTGGAAATTCTACCA+CGG + tig0023138:67993-68012 Msa1405470:five_prime_UTR 35.0%
ATGTTTGTTTCACGTGATCA+TGG + tig0023138:68048-68067 Msa1405470:five_prime_UTR 35.0%
TGTTTGTTTCACGTGATCAT+GGG + tig0023138:68049-68068 Msa1405470:five_prime_UTR 35.0%
CTAAGGAAATTGACATGACT+AGG - tig0023138:68193-68212 None:intergenic 35.0%
TCATGTCAATTTCCTTAGAC+TGG + tig0023138:68195-68214 Msa1405470:five_prime_UTR 35.0%
! CTGGAATCTTTTATGTTCAG+AGG + tig0023138:68214-68233 Msa1405470:five_prime_UTR 35.0%
! GCATCGATACTTCTTATTGA+AGG + tig0023138:68243-68262 Msa1405470:five_prime_UTR 35.0%
! GTGAGATGCATCTTATTTCA+AGG - tig0023138:68559-68578 None:intergenic 35.0%
AATAAGATGCATCTCACACT+CGG + tig0023138:68562-68581 Msa1405470:five_prime_UTR 35.0%
ATTCTCTTCAGTGTCAAGTT+AGG + tig0023138:68647-68666 Msa1405470:five_prime_UTR 35.0%
! TTTGATGGTTTAGTGTTGAG+TGG + tig0023138:68753-68772 Msa1405470:intron 35.0%
! CAATCAAAATTAGCCTGTGT+AGG - tig0023138:68801-68820 None:intergenic 35.0%
!! CTACACAGGCTAATTTTGAT+TGG + tig0023138:68799-68818 Msa1405470:intron 35.0%
ATGACTTCAAAACCAGTCTT+TGG - tig0023138:68896-68915 None:intergenic 35.0%
GTCCAAACTATTTCAGATAG+AGG - tig0023138:69022-69041 None:intergenic 35.0%
ATAGTTTGGACTCCAGATAA+AGG + tig0023138:69031-69050 Msa1405470:CDS 35.0%
! TGGTGTATATTCTGGAAAGA+TGG - tig0023138:69281-69300 None:intergenic 35.0%
CCTGTATCATGTTCTTGATA+TGG - tig0023138:69301-69320 None:intergenic 35.0%
CCATATCAAGAACATGATAC+AGG + tig0023138:69298-69317 Msa1405470:CDS 35.0%
TACATCTGTAGGATCCATAA+GGG - tig0023138:69336-69355 None:intergenic 35.0%
TTATGGATCCTACAGATGTA+GGG + tig0023138:69336-69355 Msa1405470:intron 35.0%
TGAGTTTGCAGTAAGAACTT+TGG + tig0023138:69364-69383 Msa1405470:intron 35.0%
! GAAGTATTTACTTTGTCACG+AGG + tig0023138:69405-69424 Msa1405470:intron 35.0%
GATTTGAATTTCATCCCTTC+AGG - tig0023138:69464-69483 None:intergenic 35.0%
TTGGAGAAAATTAACTCTGC+TGG + tig0023138:69614-69633 Msa1405470:CDS 35.0%
! TGATTTGGCAAATGGTCAAA+AGG + tig0023138:69646-69665 Msa1405470:CDS 35.0%
CACAAATATTCTTCTCCCAA+TGG - tig0023138:69685-69704 None:intergenic 35.0%
GTAAATTACCAACTGGACTT+TGG - tig0023138:70176-70195 None:intergenic 35.0%
TTGTAATGTTTCCTTGGTGA+AGG - tig0023138:70240-70259 None:intergenic 35.0%
CCTTCTTTGTAATGTTTCCT+TGG - tig0023138:70246-70265 None:intergenic 35.0%
CCAAGGAAACATTACAAAGA+AGG + tig0023138:70243-70262 Msa1405470:CDS 35.0%
GAAACATTACAAAGAAGGCT+TGG + tig0023138:70248-70267 Msa1405470:CDS 35.0%
! GATAAAGGTTCTAATCCTCT+TGG + tig0023138:70342-70361 Msa1405470:CDS 35.0%
ATCATCCGGCATTAATCATT+CGG + tig0023138:70377-70396 Msa1405470:CDS 35.0%
TAACATCATCTCATTGACCT+TGG - tig0023138:70517-70536 None:intergenic 35.0%
TCATAGCTCATTCATGAACT+TGG + tig0023138:70701-70720 Msa1405470:CDS 35.0%
GGACTGAAAATTGGATTTGA+AGG - tig0023138:70856-70875 None:intergenic 35.0%
CTCAAAACACTGACAATATG+TGG - tig0023138:70877-70896 None:intergenic 35.0%
TTGATGAGACATTCTTGTTC+CGG - tig0023138:70904-70923 None:intergenic 35.0%
ACAAGAATGTCTCATCAAGT+AGG + tig0023138:70906-70925 Msa1405470:CDS 35.0%
AAATTTATAGGCCTAACCTG+AGG - tig0023138:70978-70997 None:intergenic 35.0%
!! CTTCTCATCTTTAAGACCAA+TGG - tig0023138:71220-71239 None:intergenic 35.0%
!! CATTGGTCTTAAAGATGAGA+AGG + tig0023138:71218-71237 Msa1405470:CDS 35.0%
! TGTTTGTTGGCATTGTTTGA+TGG - tig0023138:71349-71368 None:intergenic 35.0%
TGGTAGACTATTCTGTTTGT+TGG - tig0023138:71362-71381 None:intergenic 35.0%
!! GAGCATTGACAACAATTGTA+GGG - tig0023138:71692-71711 None:intergenic 35.0%
CTCAACCAATGAATGAAGAT+CGG - tig0023138:71779-71798 None:intergenic 35.0%
TAAAGAACTACTCCACTTGA+AGG - tig0023138:72104-72123 None:intergenic 35.0%
! TTGTGGACAAAAGGCTATTT+TGG - tig0023138:72488-72507 None:intergenic 35.0%
TTGCACTATATGTTTCCTAG+TGG + tig0023138:72630-72649 Msa1405470:intron 35.0%
GTACAAACAAGATAGAGAGA+TGG - tig0023138:72750-72769 None:intergenic 35.0%
AACCTGTATGCTTCTGTTTC+TGG + tig0023138:67979-67998 Msa1405470:five_prime_UTR 40.0%
! TTCCAGAAACAGAAGCATAC+AGG - tig0023138:67984-68003 None:intergenic 40.0%
ATAGAAAAGATACGGTACCG+TGG - tig0023138:68013-68032 None:intergenic 40.0%
GTTTGTTTCACGTGATCATG+GGG + tig0023138:68050-68069 Msa1405470:five_prime_UTR 40.0%
TTGACGCGTTAATGCTTCAT+AGG + tig0023138:68352-68371 Msa1405470:five_prime_UTR 40.0%
ATAAGATGCATCTCACACTC+GGG + tig0023138:68563-68582 Msa1405470:five_prime_UTR 40.0%
!! ATGGTATTGGCTTGGGATTT+GGG + tig0023138:68594-68613 Msa1405470:five_prime_UTR 40.0%
TCTTCAGTGTCAAGTTAGGT+GGG + tig0023138:68651-68670 Msa1405470:intron 40.0%
CGATGTTGAACCTAGTAGTA+TGG + tig0023138:69111-69130 Msa1405470:CDS 40.0%
AGAGCAAGAACCATACTACT+AGG - tig0023138:69124-69143 None:intergenic 40.0%
GTCTTCTACAGGTTTATCTG+TGG - tig0023138:69167-69186 None:intergenic 40.0%
TGCACTAAAACGTCTTCTAC+AGG - tig0023138:69178-69197 None:intergenic 40.0%
TTTGCGCATATAACAGCAAG+AGG - tig0023138:69202-69221 None:intergenic 40.0%
CTACATCTGTAGGATCCATA+AGG - tig0023138:69337-69356 None:intergenic 40.0%
CTTATGGATCCTACAGATGT+AGG + tig0023138:69335-69354 Msa1405470:intron 40.0%
TCACATTTCCCTACATCTGT+AGG - tig0023138:69347-69366 None:intergenic 40.0%
TCAGCTCAATGGTAAGAACT+TGG + tig0023138:69430-69449 Msa1405470:intron 40.0%
! TTTCATCCCTTCAGGTTACA+CGG - tig0023138:69456-69475 None:intergenic 40.0%
GGGATGAAATTCAAATCCCT+CGG + tig0023138:69467-69486 Msa1405470:intron 40.0%
GGATGAAATTCAAATCCCTC+GGG + tig0023138:69468-69487 Msa1405470:intron 40.0%
GATGAAATTCAAATCCCTCG+GGG + tig0023138:69469-69488 Msa1405470:intron 40.0%
AATCATGATGTTGATCTGCC+AGG + tig0023138:69578-69597 Msa1405470:intron 40.0%
TCCAAATTATCACCAGATCC+TGG - tig0023138:69599-69618 None:intergenic 40.0%
GAGAAAATTAACTCTGCTGG+AGG + tig0023138:69617-69636 Msa1405470:CDS 40.0%
!! GGAACATCTGATTTGGCAAA+TGG + tig0023138:69638-69657 Msa1405470:CDS 40.0%
AGCTGCTTCAATTTCAATGC+AGG - tig0023138:69714-69733 None:intergenic 40.0%
! CTGCATATCAAAGGCATGTA+CGG + tig0023138:69928-69947 Msa1405470:intron 40.0%
AGAATGCATTGTCGCATAAC+CGG - tig0023138:70049-70068 None:intergenic 40.0%
TCTGCATCATGACTTTCTTC+AGG + tig0023138:70141-70160 Msa1405470:intron 40.0%
AGATGGGTCTAAACTTAGCA+TGG + tig0023138:70206-70225 Msa1405470:CDS 40.0%
TGGAACAAAATCCTTCACCA+AGG + tig0023138:70226-70245 Msa1405470:CDS 40.0%
!! GGATACTAGTGTTGACAACA+TGG + tig0023138:70269-70288 Msa1405470:CDS 40.0%
!! TACTAGTGTTGACAACATGG+TGG + tig0023138:70272-70291 Msa1405470:CDS 40.0%
CAAACTTTCAGCTGTAAAGC+AGG + tig0023138:70432-70451 Msa1405470:CDS 40.0%
CTACTTGCCAAAAACAATCC+AGG - tig0023138:70588-70607 None:intergenic 40.0%
!!! CTGGATTGTTTTTGGCAAGT+AGG + tig0023138:70586-70605 Msa1405470:CDS 40.0%
CTCACAATCTAGTCAAGATG+AGG + tig0023138:70746-70765 Msa1405470:CDS 40.0%
TCAAGATGAGGAGAAGTCTT+TGG + tig0023138:70758-70777 Msa1405470:CDS 40.0%
!!! TGTCAGTGTTTTGAGAATGC+CGG + tig0023138:70882-70901 Msa1405470:CDS 40.0%
GTGTTCTTCTTTACATCCTC+AGG + tig0023138:70959-70978 Msa1405470:CDS 40.0%
CTTCTTTACATCCTCAGGTT+AGG + tig0023138:70964-70983 Msa1405470:intron 40.0%
AAAGAGGCTTCTTCTTCCAT+TGG + tig0023138:71201-71220 Msa1405470:CDS 40.0%
AGATGAGAAGGGAAACAATG+AGG + tig0023138:71230-71249 Msa1405470:CDS 40.0%
TGGTTTCCATGTTTGCAAAG+AGG + tig0023138:71316-71335 Msa1405470:CDS 40.0%
TCCATGTTTGCAAAGAGGTT+AGG + tig0023138:71321-71340 Msa1405470:CDS 40.0%
ACCTAACCTCTTTGCAAACA+TGG - tig0023138:71325-71344 None:intergenic 40.0%
AACAGAATAGTCTACCACAC+AGG + tig0023138:71365-71384 Msa1405470:exon 40.0%
!! CGAGCATTGACAACAATTGT+AGG - tig0023138:71693-71712 None:intergenic 40.0%
TTCGTCCGATCTTCATTCAT+TGG + tig0023138:71771-71790 Msa1405470:intron 40.0%
GTTGTGCTGTGATTTAGTGA+GGG - tig0023138:72434-72453 None:intergenic 40.0%
AGTTGTGCTGTGATTTAGTG+AGG - tig0023138:72435-72454 None:intergenic 40.0%
! AACAAGTCTGAAGGTGTGTT+TGG - tig0023138:72582-72601 None:intergenic 40.0%
AATCGAATAAAGGGACCACT+AGG - tig0023138:72648-72667 None:intergenic 40.0%
!!! GTTTTGGAACTTCCCTAACT+TGG + tig0023138:72723-72742 Msa1405470:intron 40.0%
TAGAGAGATGGACCAAGTTA+GGG - tig0023138:72738-72757 None:intergenic 40.0%
ATAGAGAGATGGACCAAGTT+AGG - tig0023138:72739-72758 None:intergenic 40.0%
! CTCTATCTTGTTTGTACTGC+AGG + tig0023138:72753-72772 Msa1405470:intron 40.0%
CAGCAACGTTAAATGAGTTG+AGG - tig0023138:72802-72821 None:intergenic 40.0%
ATTACGACACCGACACACAT+CGG - tig0023138:68279-68298 None:intergenic 45.0%
AATCCCAAGCCAATACCATC+AGG - tig0023138:68593-68612 None:intergenic 45.0%
!! GATGGTATTGGCTTGGGATT+TGG + tig0023138:68593-68612 Msa1405470:five_prime_UTR 45.0%
CTCTTCAGTGTCAAGTTAGG+TGG + tig0023138:68650-68669 Msa1405470:intron 45.0%
TCCACATTCATACCCTACAC+AGG + tig0023138:68785-68804 Msa1405470:intron 45.0%
CTTGAGTACTCAGCAGTAGA+AGG - tig0023138:68845-68864 None:intergenic 45.0%
TTGCAAACTGAGTCAAGTGC+AGG + tig0023138:68950-68969 Msa1405470:CDS 45.0%
AAGAGTGACGTTTCTTCGAC+AGG + tig0023138:69220-69239 Msa1405470:CDS 45.0%
! TCGCTTGTTGAATTCCTAGC+AGG - tig0023138:69250-69269 None:intergenic 45.0%
AAATTCAAATCCCTCGGGGA+CGG + tig0023138:69473-69492 Msa1405470:intron 45.0%
GCCAGGATCTGGTGATAATT+TGG + tig0023138:69595-69614 Msa1405470:intron 45.0%
TGCTGGAGGAACATCTGATT+TGG + tig0023138:69631-69650 Msa1405470:CDS 45.0%
GTAACCACATGTGTCAGTGT+CGG - tig0023138:69970-69989 None:intergenic 45.0%
CAGATCAACCAAAGTCCAGT+TGG + tig0023138:70165-70184 Msa1405470:CDS 45.0%
GTCTACCACACAGGTAAACA+TGG + tig0023138:71374-71393 Msa1405470:intron 45.0%
TCAAGCCATGTTTACCTGTG+TGG - tig0023138:71382-71401 None:intergenic 45.0%
TTGTCAATGCTCGTGATCGT+TGG + tig0023138:71700-71719 Msa1405470:intron 45.0%
GCTTCAGGGACAAAACAAAC+TGG + tig0023138:72374-72393 Msa1405470:intron 45.0%
TCAGGGACAAAACAAACTGG+AGG + tig0023138:72377-72396 Msa1405470:intron 45.0%
TGTACTGCAGGAAGACATCA+TGG + tig0023138:72765-72784 Msa1405470:intron 45.0%
!! TTGGCCTGATGGTATTGGCT+TGG + tig0023138:68586-68605 Msa1405470:five_prime_UTR 50.0%
!! TGGCCTGATGGTATTGGCTT+GGG + tig0023138:68587-68606 Msa1405470:five_prime_UTR 50.0%
TCGAACCTGAGACCTTGAGT+AGG - tig0023138:68628-68647 None:intergenic 50.0%
GCCTGTGTAGGGTATGAATG+TGG - tig0023138:68789-68808 None:intergenic 50.0%
TTCAACATCGCGCAAAAGCG+AGG - tig0023138:69101-69120 None:intergenic 50.0%
AACTTGGCCGTGTAACCTGA+AGG + tig0023138:69446-69465 Msa1405470:intron 50.0%
ACTTGGCCGTGTAACCTGAA+GGG + tig0023138:69447-69466 Msa1405470:intron 50.0%
!! CATTTTTCAACCGTCCCCGA+GGG - tig0023138:69486-69505 None:intergenic 50.0%
!! TCATTTTTCAACCGTCCCCG+AGG - tig0023138:69487-69506 None:intergenic 50.0%
GATGTTGATCTGCCAGGATC+TGG + tig0023138:69584-69603 Msa1405470:intron 50.0%
GTATCCGACACTGACACATG+TGG + tig0023138:69963-69982 Msa1405470:intron 50.0%
CTACATGTCAGTGTCGTGTC+CGG + tig0023138:70027-70046 Msa1405470:intron 50.0%
! CACCTTCGATGGCCTTACAA+GGG + tig0023138:70807-70826 Msa1405470:CDS 50.0%
! TCTGGAGCTTGACCCTTGTA+AGG - tig0023138:70822-70841 None:intergenic 50.0%
CAAGCAATAGCCTCTGCAGA+CGG + tig0023138:70937-70956 Msa1405470:CDS 50.0%
AAGAAGAACACCGTCTGCAG+AGG - tig0023138:70950-70969 None:intergenic 50.0%
GACACCGACACACATCGGAT+CGG - tig0023138:68274-68293 None:intergenic 55.0%
GATGCATCTCACACTCGGGT+TGG + tig0023138:68567-68586 Msa1405470:five_prime_UTR 55.0%
!! TCGGGTTGGCCTGATGGTAT+TGG + tig0023138:68581-68600 Msa1405470:five_prime_UTR 55.0%
! TGGGAGTGTGCTCCTACTCA+AGG + tig0023138:68613-68632 Msa1405470:five_prime_UTR 55.0%
GTGCTCCTACTCAAGGTCTC+AGG + tig0023138:68620-68639 Msa1405470:five_prime_UTR 55.0%
CTTCGACAGGTACTCCTGCT+AGG + tig0023138:69233-69252 Msa1405470:CDS 55.0%
! GTCACGAGGTGTCAGCTCAA+TGG + tig0023138:69419-69438 Msa1405470:intron 55.0%
ATCCTGATCGCCACCTTCGA+TGG + tig0023138:70796-70815 Msa1405470:CDS 55.0%
CCTTGTAAGGCCATCGAAGG+TGG - tig0023138:70809-70828 None:intergenic 55.0%
! CCACCTTCGATGGCCTTACA+AGG + tig0023138:70806-70825 Msa1405470:CDS 55.0%
GACCCTTGTAAGGCCATCGA+AGG - tig0023138:70812-70831 None:intergenic 55.0%
GCGTCCGATCCGATGTGTGT+CGG + tig0023138:68267-68286 Msa1405470:five_prime_UTR 60.0%
!! TCACACTCGGGTTGGCCTGA+TGG + tig0023138:68575-68594 Msa1405470:five_prime_UTR 60.0%
TGGTTGAGATCTGCGAGCGC+AGG + tig0023138:71791-71810 Msa1405470:intron 60.0%
GGCCATCGAAGGTGGCGATC+AGG - tig0023138:70801-70820 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0023138 gene 67802 73120 67802 ID=Msa1405470;Name=Msa1405470
tig0023138 mRNA 67802 73120 67802 ID=Msa1405470-mRNA-1;Parent=Msa1405470;Name=Msa1405470-mRNA-1;_AED=0.20;_eAED=0.20;_QI=914|1|1|1|0.6|0.5|6|358|561
tig0023138 exon 67802 68668 67802 ID=Msa1405470-mRNA-1:exon:24095;Parent=Msa1405470-mRNA-1
tig0023138 exon 68840 69319 68840 ID=Msa1405470-mRNA-1:exon:24096;Parent=Msa1405470-mRNA-1
tig0023138 exon 69600 69782 69600 ID=Msa1405470-mRNA-1:exon:24097;Parent=Msa1405470-mRNA-1
tig0023138 exon 70163 70980 70163 ID=Msa1405470-mRNA-1:exon:24098;Parent=Msa1405470-mRNA-1
tig0023138 exon 71123 71386 71123 ID=Msa1405470-mRNA-1:exon:24099;Parent=Msa1405470-mRNA-1
tig0023138 exon 72775 73120 72775 ID=Msa1405470-mRNA-1:exon:24100;Parent=Msa1405470-mRNA-1
tig0023138 five_prime_UTR 67802 68668 67802 ID=Msa1405470-mRNA-1:five_prime_utr;Parent=Msa1405470-mRNA-1
tig0023138 five_prime_UTR 68840 68886 68840 ID=Msa1405470-mRNA-1:five_prime_utr;Parent=Msa1405470-mRNA-1
tig0023138 CDS 68887 69319 68887 ID=Msa1405470-mRNA-1:cds;Parent=Msa1405470-mRNA-1
tig0023138 CDS 69600 69782 69600 ID=Msa1405470-mRNA-1:cds;Parent=Msa1405470-mRNA-1
tig0023138 CDS 70163 70980 70163 ID=Msa1405470-mRNA-1:cds;Parent=Msa1405470-mRNA-1
tig0023138 CDS 71123 71374 71123 ID=Msa1405470-mRNA-1:cds;Parent=Msa1405470-mRNA-1
tig0023138 three_prime_UTR 71375 71386 71375 ID=Msa1405470-mRNA-1:three_prime_utr;Parent=Msa1405470-mRNA-1
tig0023138 three_prime_UTR 72775 73120 72775 ID=Msa1405470-mRNA-1:three_prime_utr;Parent=Msa1405470-mRNA-1
Gene Sequence

>Msa1405470

ATGAAACCAAAGACTGGTTTTGAAGTCATTCTGAATTATTCTAGTCAATGTCATAAGGAAAAATTGCAAACTGAGTCAAGTGCAGGTGCAAATGCAGCTTCTAGAGCAAACACAATCTTTTCTGCCAATGATCCTCTATCTGAAATAGTTTGGACTCCAGATAAAGGTTTCAGTCTTAAATGTGTCGATTCAAGTTTTACTAACAAAAATACCTCGCTTTTGCGCGATGTTGAACCTAGTAGTATGGTTCTTGCTCTGCTACAAAGTGTTACTTGTGCCACAGATAAACCTGTAGAAGACGTTTTAGTGCAACCTCTTGCTGTTATATGCGCAAAGAGTGACGTTTCTTCGACAGGTACTCCTGCTAGGAATTCAACAAGCGATTCAGTTGCCATCTTTCCAGAATATACACCATATCAAGAACATGATACAGGATCTGGTGATAATTTGGAGAAAATTAACTCTGCTGGAGGAACATCTGATTTGGCAAATGGTCAAAAGGAGAATTTAATGAACCATTGGGAGAAGAATATTTGTGCTCAAGCCTGCATTGAAATTGAAGCAGCTAAAATATCTGAGATAATGGAAGAGGAAAACAAATCTTCTACTATTTCAGGTCAGATCAACCAAAGTCCAGTTGGTAATTTACAAGTTCATCAAGATGGGTCTAAACTTAGCATGGAACAAAATCCTTCACCAAGGAAACATTACAAAGAAGGCTTGGATACTAGTGTTGACAACATGGTGGTTGAAATAGAAGATGACTCGTATACTAGAGTTGAACACATGATTGAAGATAAAGGTTCTAATCCTCTTGGAACATATTTGATATCATCCGGCATTAATCATTCGGAAAAAATGGATTTAACTTCACAGAAAGATTTACAAACTTTCAGCTGTAAAGCAGGTACTTCTGCAGCAACAAGCAGAGTTCTTGTTTCAAAATCCAATGATAATAAAAACAAATCCAAGGTCAATGAGATGATGTTACCATACAATAAGAATGAGAGTCATCTAAGTTTTGAAAACTATCATAATCCTGGATTGTTTTTGGCAAGTAGGAAGCGATCGAAACAAGAAGTGATAATTGCGAGCAAAAGAGTCAAAATGCAAATTCAAGAAACTTCATCATATTCTAAATCCTATGTTAATCATCATAGCTCATTCATGAACTTGGTTTCAAACATGACTAAAGGATACTCACAATCTAGTCAAGATGAGGAGAAGTCTTTGGCTCTTGCTCATGAAAATCCTGATCGCCACCTTCGATGGCCTTACAAGGGTCAAGCTCCAGAGATTAAAAATTCCTTCAAATCCAATTTTCAGTCCACATATTGTCAGTGTTTTGAGAATGCCGGAACAAGAATGTCTCATCAAGTAGGAGAGTCTTCAAGCAATAGCCTCTGCAGACGGTGTTCTTCTTTACATCCTCAGGTTGAAGAGACTAAAGAACAATATGCTGATAACCAATTGGTCATTGAGACTAAAAAGTTACAGAATTGTTTTATCAACAAAGAGGCTTCTTCTTCCATTGGTCTTAAAGATGAGAAGGGAAACAATGAGGACATATCTAAGCATAAGTTTAACAATGTTACGCCTTTTTCGAGATTGAGAGATTCAGAGGCAATGGTTTCCATGTTTGCAAAGAGGTTAGGTGCCATCAAACAATGCCAACAAACAGAATAG

Protein sequence

>Msa1405470

MKPKTGFEVILNYSSQCHKEKLQTESSAGANAASRANTIFSANDPLSEIVWTPDKGFSLKCVDSSFTNKNTSLLRDVEPSSMVLALLQSVTCATDKPVEDVLVQPLAVICAKSDVSSTGTPARNSTSDSVAIFPEYTPYQEHDTGSGDNLEKINSAGGTSDLANGQKENLMNHWEKNICAQACIEIEAAKISEIMEEENKSSTISGQINQSPVGNLQVHQDGSKLSMEQNPSPRKHYKEGLDTSVDNMVVEIEDDSYTRVEHMIEDKGSNPLGTYLISSGINHSEKMDLTSQKDLQTFSCKAGTSAATSRVLVSKSNDNKNKSKVNEMMLPYNKNESHLSFENYHNPGLFLASRKRSKQEVIIASKRVKMQIQETSSYSKSYVNHHSSFMNLVSNMTKGYSQSSQDEEKSLALAHENPDRHLRWPYKGQAPEIKNSFKSNFQSTYCQCFENAGTRMSHQVGESSSNSLCRRCSSLHPQVEETKEQYADNQLVIETKKLQNCFINKEASSSIGLKDEKGNNEDISKHKFNNVTPFSRLRDSEAMVSMFAKRLGAIKQCQQTE*