AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0323630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323630 MtrunA17_Chr2g0300861 94.609 371 20 0 1 371 1 371 0.0 701
Msa0323630 MtrunA17_Chr2g0300851 85.915 355 47 1 17 371 1 352 0.0 630
Msa0323630 MtrunA17_Chr2g0300841 85.836 353 49 1 20 371 8 360 0.0 612
Msa0323630 MtrunA17_Chr8g0370791 32.764 351 222 10 22 366 22 364 3.34e-55 185
Msa0323630 MtrunA17_Chr8g0370761 32.123 358 215 11 22 366 22 364 1.45e-50 173
Msa0323630 MtrunA17_Chr8g0370771 32.218 239 141 5 136 366 4 229 2.15e-36 132
Msa0323630 MtrunA17_Chr4g0025341 30.303 264 171 4 110 364 128 387 2.13e-33 128
Msa0323630 MtrunA17_Chr2g0329531 27.562 283 193 6 96 367 124 405 1.59e-31 123
Msa0323630 MtrunA17_Chr7g0256601 30.522 249 163 5 126 365 167 414 2.81e-30 120
Msa0323630 MtrunA17_Chr2g0322241 30.800 250 160 8 124 364 146 391 4.66e-28 113
Msa0323630 MtrunA17_Chr7g0256591 28.958 259 154 6 126 365 136 383 5.47e-28 113
Msa0323630 MtrunA17_Chr7g0256581 29.024 379 212 14 22 364 8 365 5.70e-28 112
Msa0323630 MtrunA17_Chr7g0256571 29.114 316 192 10 77 364 54 365 1.52e-27 111
Msa0323630 MtrunA17_Chr4g0062001 33.514 185 112 4 124 298 110 293 2.15e-25 105
Msa0323630 MtrunA17_Chr8g0376581 35.849 159 98 3 124 279 108 265 1.43e-23 99.8
Msa0323630 MtrunA17_Chr7g0256561 28.279 244 135 4 124 364 125 331 2.60e-23 99.4
Msa0323630 MtrunA17_Chr4g0062031 36.145 166 99 4 124 283 109 273 4.99e-22 95.5
Msa0323630 MtrunA17_Chr2g0307721 37.736 159 92 5 126 279 120 276 7.91e-22 97.4
Msa0323630 MtrunA17_Chr2g0307721 36.943 157 92 5 128 279 574 728 1.12e-17 84.7
Msa0323630 MtrunA17_Chr5g0443561 28.920 287 153 8 89 364 73 319 3.24e-21 93.2
Msa0323630 MtrunA17_Chr4g0062021 35.032 157 96 4 128 279 126 281 3.48e-21 93.6
Msa0323630 MtrunA17_Chr8g0370801 38.679 106 60 1 135 235 2 107 9.45e-21 86.3
Msa0323630 MtrunA17_Chr4g0020271 37.398 123 75 2 158 279 1 122 1.27e-20 89.0
Msa0323630 MtrunA17_Chr4g0061871 35.714 84 53 1 196 279 31 113 1.43e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323630 AT3G51430.2 30.532 357 212 9 31 368 20 359 2.41e-48 167
Msa0323630 AT3G51420.1 30.978 368 214 11 22 368 13 361 3.81e-48 167
Msa0323630 AT3G51430.1 30.641 359 211 10 31 368 20 361 4.91e-48 167
Msa0323630 AT3G51440.1 30.851 376 219 11 17 368 3 361 1.53e-46 163
Msa0323630 AT3G51450.1 30.245 367 226 11 20 368 7 361 6.72e-43 153
Msa0323630 AT3G57020.2 30.333 300 183 11 77 358 54 345 1.72e-32 125
Msa0323630 AT1G08470.1 29.457 258 153 5 124 364 140 385 8.80e-31 121
Msa0323630 AT3G59530.3 25.432 405 242 14 13 370 8 399 1.16e-30 121
Msa0323630 AT3G59530.2 25.432 405 242 14 13 370 8 399 1.16e-30 121
Msa0323630 AT3G59530.1 25.432 405 242 14 13 370 8 399 1.16e-30 121
Msa0323630 AT3G57020.1 31.518 257 152 9 118 358 111 359 1.19e-30 120
Msa0323630 AT5G22020.3 29.412 272 163 5 110 364 132 391 1.46e-30 120
Msa0323630 AT5G22020.1 29.412 272 163 5 110 364 132 391 1.46e-30 120
Msa0323630 AT5G22020.2 29.412 272 163 5 110 364 132 391 1.46e-30 120
Msa0323630 AT3G57030.1 31.474 251 158 5 124 364 124 370 3.93e-30 119
Msa0323630 AT3G57010.1 31.429 245 155 9 124 358 119 360 5.06e-30 119
Msa0323630 AT2G41300.1 32.400 250 158 8 118 358 136 383 3.08e-29 117
Msa0323630 AT2G41290.1 30.153 262 166 8 118 364 113 372 1.48e-24 103
Msa0323630 AT1G74010.1 26.582 316 180 10 77 368 38 325 6.31e-19 87.0
Msa0323630 AT1G74000.1 25.538 325 173 11 77 368 41 329 4.56e-18 84.7
Msa0323630 AT1G74020.1 27.059 255 142 8 124 368 107 327 1.94e-16 80.1

Find 96 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGAACAAAATTCCTTTCT+TGG 0.185140 2_4:+27879790 Msa0323630:five_prime_UTR
TTGCTCCTGATGGCTCATTT+TGG 0.218438 2_4:+27884063 Msa0323630:CDS
GAATGGTTAGGAATGGAAAT+TGG 0.237351 2_4:+27880395 Msa0323630:CDS
TGGTTTACACGATTGGTATT+TGG 0.262285 2_4:+27882448 Msa0323630:CDS
TTGGCATCTGTTTCCTTCTC+TGG 0.283295 2_4:-27879883 None:intergenic
TGTTCAGATCTTACTGAATA+AGG 0.284044 2_4:+27884841 Msa0323630:three_prime_UTR
GGCAATATTATCAGAAAGTT+TGG 0.284064 2_4:+27884697 Msa0323630:CDS
TGCTGCAGTTAACTTCTAAA+AGG 0.294138 2_4:+27884557 Msa0323630:intron
TTATCCACACAAACATCTTC+TGG 0.304876 2_4:-27880328 None:intergenic
AGTGTTGCTAGTAACAAATT+TGG 0.314925 2_4:+27882428 Msa0323630:CDS
GAAGGAATTTCTAGTATAAC+TGG 0.319267 2_4:-27880123 None:intergenic
CCTTTATATATTGCATATAG+TGG 0.334962 2_4:-27879952 None:intergenic
GGAATGGAAATTGGGAGAAT+TGG 0.337340 2_4:+27880404 Msa0323630:CDS
CCACTATATGCAATATATAA+AGG 0.351201 2_4:+27879952 Msa0323630:five_prime_UTR
AGTCTTAATTCTGACTTTGT+TGG 0.375736 2_4:+27884790 Msa0323630:CDS
GGAAGGAGGATTGGTTATAT+TGG 0.379690 2_4:-27880004 None:intergenic
GAAGTGCTTGGATACTTTAG+AGG 0.389941 2_4:-27884596 Msa0323640:three_prime_UTR
GTTCAGATCTTACTGAATAA+GGG 0.391333 2_4:+27884842 Msa0323630:three_prime_UTR
AACTTCAGCTGTGGAGTTTG+AGG 0.394622 2_4:+27884750 Msa0323630:CDS
CATCTCTTGTAGCTGTATAT+AGG 0.396008 2_4:-27880360 None:intergenic
ATAGATAGCTCTTCTTTGCT+TGG 0.400675 2_4:+27880433 Msa0323630:CDS
TCTAGTATAACTGGATCTAT+AGG 0.403292 2_4:-27880114 None:intergenic
ATCTGTTTCCTTCTCTGGAC+TGG 0.409219 2_4:-27879878 None:intergenic
TGTGTGAGGCATTGGCTAAA+AGG 0.415735 2_4:+27883975 Msa0323630:CDS
ACAAATTTGGTTTACACGAT+TGG 0.435403 2_4:+27882441 Msa0323630:CDS
AATGGTTAGGAATGGAAATT+GGG 0.437047 2_4:+27880396 Msa0323630:CDS
GCAGTTAACTTCTAAAAGGC+TGG 0.443325 2_4:+27884561 Msa0323630:intron
TTGATCAGATTAAATAGCCT+TGG 0.444628 2_4:-27884631 Msa0323640:three_prime_UTR
AGATGGTTGGATTAAAAGAA+TGG 0.447747 2_4:+27880378 Msa0323630:CDS
TGGAGAGTTATCCGTGAGTT+CGG 0.448185 2_4:-27879858 None:intergenic
GTTATCCTTTCACAAGTGAA+TGG 0.449739 2_4:+27880657 Msa0323630:CDS
TGACAGAATGTGATTAAACT+TGG 0.452461 2_4:+27880286 Msa0323630:intron
CGCAACATAATCTTCATCCT+TGG 0.453933 2_4:-27882579 Msa0323640:three_prime_UTR
GTTGGATTAAAAGAATGGTT+AGG 0.454450 2_4:+27880383 Msa0323630:CDS
AGAAAGTTTGGTGATAATGA+AGG 0.457447 2_4:+27884709 Msa0323630:CDS
ACCAATCCTCCTTCCACCCT+TGG 0.462624 2_4:+27880012 Msa0323630:CDS
GATTCAGGTGTGTGAGGCAT+TGG 0.463065 2_4:+27883967 Msa0323630:intron
ACCAAGGGTGGAAGGAGGAT+TGG 0.465023 2_4:-27880013 None:intergenic
TCAAATAATTACGCCAAGAA+AGG 0.470623 2_4:-27879803 None:intergenic
CAGTTAACTTCTAAAAGGCT+GGG 0.484127 2_4:+27884562 Msa0323630:intron
TTTGAGGACCATCTTTACTT+AGG 0.485151 2_4:+27884766 Msa0323630:CDS
TAAGACTTCCTAAGTAAAGA+TGG 0.494581 2_4:-27884774 Msa0323640:three_prime_UTR
GGAGCAAGATTGATATTGTC+AGG 0.502429 2_4:-27884047 Msa0323640:three_prime_UTR
GCGATCCAAAATGAGCCATC+AGG 0.504819 2_4:-27884068 Msa0323640:three_prime_UTR
GATAATTTGACATTTGCAAA+TGG 0.505703 2_4:+27882545 Msa0323630:CDS
TTGCTAGAGGCAAGACCTCA+TGG 0.506453 2_4:+27882473 Msa0323630:CDS
ATTAAAAGAATGGTTAGGAA+TGG 0.506704 2_4:+27880388 Msa0323630:CDS
TGTCACACTGACCTCAAGCT+TGG 0.512720 2_4:+27880044 Msa0323630:CDS
TCAGCTATGGTGGTAAATGT+TGG 0.514317 2_4:+27884667 Msa0323630:CDS
TTGATATTGTCAGGTCCACC+AGG 0.514609 2_4:-27884038 Msa0323640:three_prime_UTR
ATGTTGCGGTGTGCGAAACT+TGG 0.523447 2_4:+27882594 Msa0323630:CDS
AATATCAATCTTGCTCCTGA+TGG 0.526078 2_4:+27884053 Msa0323630:CDS
TTGCTCAAGGTTACAGAAGA+CGG 0.530327 2_4:+27880627 Msa0323630:CDS
AAATGAAGCAAAGAAGTGCT+TGG 0.534736 2_4:-27884608 Msa0323640:three_prime_UTR
ACTTCTTTGCTTCATTTCCA+AGG 0.538170 2_4:+27884614 Msa0323630:CDS
GAAAGTTTGGTGATAATGAA+GGG 0.552529 2_4:+27884710 Msa0323630:CDS
ATCTTCATTGAAAACCTCCC+TGG 0.556484 2_4:+27884020 Msa0323630:CDS
AATGTGATTAAACTTGGAGA+AGG 0.561564 2_4:+27880292 Msa0323630:CDS
TAGTGCAACAAAATCAGCTA+TGG 0.562467 2_4:+27884654 Msa0323630:CDS
GAAGTTGAAGATGCAGCAGA+AGG 0.562477 2_4:-27880141 None:intergenic
GAGAACCATTCACTTGTGAA+AGG 0.565917 2_4:-27880662 None:intergenic
CATTGTCTGTGATACTACCT+TGG 0.569110 2_4:+27880483 Msa0323630:CDS
ATACAGCTACAAGAGATGGT+TGG 0.570015 2_4:+27880365 Msa0323630:CDS
GGAATCACTACATCTAAAGA+TGG 0.570283 2_4:+27880454 Msa0323630:CDS
CGCACACAGCTTGTAAAGCA+TGG 0.576105 2_4:+27879978 Msa0323630:exon
CAATATTTACCAAGGGTGGA+AGG 0.576861 2_4:-27880021 None:intergenic
GTGGTAAATGTTGGAACTGA+AGG 0.578101 2_4:+27884676 Msa0323630:CDS
TTCAGATCTTACTGAATAAG+GGG 0.581317 2_4:+27884843 Msa0323630:three_prime_UTR
TTGGTATTTGGATTTGCTAG+AGG 0.584211 2_4:+27882460 Msa0323630:CDS
TGCAACAAAATCAGCTATGG+TGG 0.585649 2_4:+27884657 Msa0323630:CDS
CTATATACAGCTACAAGAGA+TGG 0.586350 2_4:+27880361 Msa0323630:CDS
GATGTAATAGAAGCATCAGA+TGG 0.591553 2_4:+27882392 Msa0323630:CDS
GTTTGGTGATAATGAAGGGA+AGG 0.592713 2_4:+27884714 Msa0323630:CDS
TACTTTAAAAGTTGTCCATG+AGG 0.601518 2_4:-27882488 Msa0323640:three_prime_UTR
AGTTAACTTCTAAAAGGCTG+GGG 0.604881 2_4:+27884563 Msa0323630:intron
ATAACTCTCCAGTCCAGAGA+AGG 0.605710 2_4:+27879870 Msa0323630:five_prime_UTR
TAACCAGATTCAGGTGTGTG+AGG 0.607129 2_4:+27883961 Msa0323630:intron
GATGTTTGTGTGGATAAAGA+TGG 0.610609 2_4:+27880334 Msa0323630:CDS
AGAGCTATTAGCCGAACTCA+CGG 0.616988 2_4:+27879847 Msa0323630:five_prime_UTR
GACACAATATTTACCAAGGG+TGG 0.622060 2_4:-27880025 None:intergenic
TGGCTAAAAGGAATTAACAA+AGG 0.629911 2_4:+27883987 Msa0323630:CDS
AAATGGTGTTGCACTGTCCA+AGG 0.631186 2_4:+27882562 Msa0323630:CDS
AGTAGTTCAGGAACGGACGA+TGG 0.631918 2_4:+27879768 None:intergenic
AGCTGCTAGAACCAAGCTTG+AGG 0.640833 2_4:-27880055 None:intergenic
ATCACTACATCTAAAGATGG+TGG 0.642182 2_4:+27880457 Msa0323630:CDS
TTCATTGAAAACCTCCCTGG+TGG 0.642285 2_4:+27884023 Msa0323630:CDS
ATAACTGTCTCATTTAACGT+GGG 0.647464 2_4:-27882515 Msa0323640:three_prime_UTR
GTGTGACACAATATTTACCA+AGG 0.651473 2_4:-27880029 None:intergenic
TATTTACCAAGGGTGGAAGG+AGG 0.655011 2_4:-27880018 None:intergenic
AATAACTGTCTCATTTAACG+TGG 0.678986 2_4:-27882516 Msa0323640:three_prime_UTR
ACAACCAGAAGATGTTTGTG+TGG 0.680429 2_4:+27880324 Msa0323630:CDS
TGTGACACAATATTTACCAA+GGG 0.698234 2_4:-27880028 None:intergenic
TATTGTCAGGTCCACCAGGG+AGG 0.702604 2_4:-27884034 Msa0323640:three_prime_UTR
CATCACTATGCAATTGACAG+TGG 0.707140 2_4:-27884820 Msa0323640:three_prime_UTR
TGATATTGTCAGGTCCACCA+GGG 0.707648 2_4:-27884037 Msa0323640:three_prime_UTR
CAAGGATGAAGATTATGTTG+CGG 0.759008 2_4:+27882580 Msa0323630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTATCACATTTTTA+TGG - chr2_4:27879931-27879950 None:intergenic 10.0%
!! TAAAATATTTATATTCATGT+AGG + chr2_4:27880506-27880525 Msa0323630:intron 10.0%
!! CATCAAATATTATAATTTAA+TGG - chr2_4:27881128-27881147 None:intergenic 10.0%
!! AAAATTCACATTATAAAATT+AGG - chr2_4:27882079-27882098 None:intergenic 10.0%
!! TTTATATTAGTAGAAAAATA+TGG - chr2_4:27882120-27882139 None:intergenic 10.0%
!!! CAAAAAGATTTTTTTTTTTT+AGG - chr2_4:27882948-27882967 Msa0323640:intron 10.0%
!!! TTTATAACTAGTATTTTATT+TGG + chr2_4:27883320-27883339 Msa0323630:intron 10.0%
!! TTATAAAGATTTATAATGTT+TGG + chr2_4:27883806-27883825 Msa0323630:intron 10.0%
!! TAAATAAATTTACTAAAGTT+AGG + chr2_4:27884176-27884195 Msa0323630:intron 10.0%
!! GTTACTTAAATTTAAAAAAA+TGG + chr2_4:27884213-27884232 Msa0323630:intron 10.0%
!!! TGAATATAAATATTTTACCA+AGG - chr2_4:27880503-27880522 None:intergenic 15.0%
!!! TTTTTTTTTACAAAGTAGTT+AGG - chr2_4:27881035-27881054 None:intergenic 15.0%
!! CAAATATTATAATTTAATGG+CGG - chr2_4:27881125-27881144 None:intergenic 15.0%
!!! TTTTATAAAAAACACCATAA+TGG + chr2_4:27881285-27881304 Msa0323630:intron 15.0%
!! ATACTATCTATTGATAAAAT+AGG - chr2_4:27881589-27881608 None:intergenic 15.0%
!!! TATTTTATCAATAGATAGTA+TGG + chr2_4:27881588-27881607 Msa0323630:intron 15.0%
!!! TTTTCTATATTGATTTTTTG+AGG - chr2_4:27881788-27881807 None:intergenic 15.0%
!! TTAAAATATCTTTAATCTTC+TGG - chr2_4:27881978-27881997 None:intergenic 15.0%
!! TACTAATATAAAAAGTCAAA+TGG + chr2_4:27882128-27882147 Msa0323630:intron 15.0%
!! TAAAAAAAACTTAAGTTCAA+TGG - chr2_4:27882673-27882692 Msa0323640:intron 15.0%
!!! AAAACAATGTTTTTTAGAAT+CGG - chr2_4:27883600-27883619 Msa0323640:intron 15.0%
!!! TATATGAACTTTGTTTTTAT+TGG + chr2_4:27884111-27884130 Msa0323630:intron 15.0%
!!! ATATGAACTTTGTTTTTATT+GGG + chr2_4:27884112-27884131 Msa0323630:intron 15.0%
!!! TAGGAATTTTGTATATTTAT+TGG - chr2_4:27884443-27884462 Msa0323640:intron 15.0%
!! ATAAATCAATAAAAAAGCAA+AGG + chr2_4:27884489-27884508 Msa0323630:intron 15.0%
!!! TTTATGGATTGTTTTGATTT+AGG - chr2_4:27879915-27879934 None:intergenic 20.0%
!!! AGAATTTTGTTAAGAACAAT+AGG + chr2_4:27880538-27880557 Msa0323630:intron 20.0%
!!! AACACATAATTATATTTTGC+AGG + chr2_4:27880602-27880621 Msa0323630:intron 20.0%
!!! ACACATAATTATATTTTGCA+GGG + chr2_4:27880603-27880622 Msa0323630:intron 20.0%
!!! TTTTATAAAAAACGCCATAA+TGG + chr2_4:27880962-27880981 Msa0323630:intron 20.0%
!!! AATATTTTAAAACAAGAGCT+CGG - chr2_4:27881907-27881926 None:intergenic 20.0%
!! ATGTATCAAATAATATGAGA+CGG + chr2_4:27882281-27882300 Msa0323630:intron 20.0%
!!! TTAATTTTATGAACTCAACA+TGG - chr2_4:27882719-27882738 Msa0323640:intron 20.0%
!! GTTGAGTTCATAAAATTAAA+AGG + chr2_4:27882720-27882739 Msa0323630:intron 20.0%
!!! GTAAAAAAACTAATTTGTTG+TGG + chr2_4:27882898-27882917 Msa0323630:intron 20.0%
!!! TAAGAAACTTTTCACTTTTT+AGG + chr2_4:27883031-27883050 Msa0323630:intron 20.0%
!! CATTCAATAAATAATGTATG+TGG - chr2_4:27883056-27883075 Msa0323640:intron 20.0%
!!! TATGAACTTTGTTTTTATTG+GGG + chr2_4:27884113-27884132 Msa0323630:intron 20.0%
!!! TCAAAATTTTATCAATTGCT+AGG - chr2_4:27884462-27884481 Msa0323640:intron 20.0%
! CCTTTATATATTGCATATAG+TGG - chr2_4:27879955-27879974 None:intergenic 25.0%
! CCACTATATGCAATATATAA+AGG + chr2_4:27879952-27879971 Msa0323630:five_prime_UTR 25.0%
! ATTCAAAAACAACCAATTAC+AGG + chr2_4:27880167-27880186 Msa0323630:CDS 25.0%
! ATTAAAAGAATGGTTAGGAA+TGG + chr2_4:27880388-27880407 Msa0323630:CDS 25.0%
! AAAAATTGCATCACTACATT+AGG + chr2_4:27880931-27880950 Msa0323630:intron 25.0%
! AAAGTAGTTAGGACAATTAA+TGG - chr2_4:27881024-27881043 None:intergenic 25.0%
! AATTAATTGCAACGAAAAAG+TGG + chr2_4:27881071-27881090 Msa0323630:intron 25.0%
! TAGCATAGTCAGATAAAATT+AGG + chr2_4:27881359-27881378 Msa0323630:intron 25.0%
!!! AAAGAATCTTGCCTTTTTTT+TGG + chr2_4:27881397-27881416 Msa0323630:intron 25.0%
! AATTTAGTGGTCCAAAAAAA+AGG - chr2_4:27881411-27881430 None:intergenic 25.0%
!!! TTTTTTTTGGACCACTAAAT+TGG + chr2_4:27881410-27881429 Msa0323630:intron 25.0%
! AAATGAGAGTAATCTTATCT+TGG - chr2_4:27881452-27881471 None:intergenic 25.0%
! TAAACAAAACTACTACTTCA+AGG + chr2_4:27881486-27881505 Msa0323630:intron 25.0%
! GATTCTATAGTTTAAATGTG+TGG - chr2_4:27881547-27881566 None:intergenic 25.0%
!!! ATATTTTAAAACAAGAGCTC+GGG - chr2_4:27881906-27881925 None:intergenic 25.0%
!! TTAGGTCATTTAAAATGAGA+CGG - chr2_4:27882061-27882080 None:intergenic 25.0%
! TGTATCAAATAATATGAGAC+GGG + chr2_4:27882282-27882301 Msa0323630:intron 25.0%
! ATTAGAAAAATCTTAGACGT+AGG - chr2_4:27882351-27882370 Msa0323640:three_prime_UTR 25.0%
!! ATTTTTCTAATGATTGAACC+AGG + chr2_4:27882360-27882379 Msa0323630:intron 25.0%
! GATAATTTGACATTTGCAAA+TGG + chr2_4:27882545-27882564 Msa0323630:CDS 25.0%
!! TAGATTTTGCTCTTTTCTAT+AGG + chr2_4:27882637-27882656 Msa0323630:intron 25.0%
!! AGATTTTGCTCTTTTCTATA+GGG + chr2_4:27882638-27882657 Msa0323630:intron 25.0%
! AGTAATACTAAAATGTGTCT+TGG - chr2_4:27882990-27883009 Msa0323640:intron 25.0%
!! TTTTTATAATATACTCCCTC+CGG - chr2_4:27883150-27883169 Msa0323640:intron 25.0%
!!! AGTTCTTAGTTTGTATGAAT+TGG - chr2_4:27883514-27883533 Msa0323640:intron 25.0%
! GAAACAATTGATAGACTTAT+TGG + chr2_4:27883544-27883563 Msa0323630:intron 25.0%
!! TTGGTTTCAAATTCAACTTT+TGG + chr2_4:27883563-27883582 Msa0323630:intron 25.0%
!!! TCAAATTCAACTTTTGGAAT+CGG + chr2_4:27883569-27883588 Msa0323630:intron 25.0%
! GAAAAATAAACCTCCATAAA+AGG + chr2_4:27883628-27883647 Msa0323630:intron 25.0%
!!! AATAGAATTTTCAGGATGAA+AGG - chr2_4:27883677-27883696 Msa0323640:intron 25.0%
! AACAACATAAGAGTTTCTTA+AGG + chr2_4:27883713-27883732 Msa0323630:intron 25.0%
! ATTTATAATGTTTGGCATAG+TGG + chr2_4:27883814-27883833 Msa0323630:intron 25.0%
! TTTATAATGTTTGGCATAGT+GGG + chr2_4:27883815-27883834 Msa0323630:intron 25.0%
! TATACCTAAAATTTGGTCAT+TGG + chr2_4:27883873-27883892 Msa0323630:intron 25.0%
!!! TTTTTTTCTTAACCAGATTC+AGG + chr2_4:27883952-27883971 Msa0323630:intron 25.0%
!!! TTCGTTTAATTTTGACAAAG+AGG + chr2_4:27884294-27884313 Msa0323630:intron 25.0%
!!! AGAGGTTGAAACTTTTTTTT+TGG + chr2_4:27884312-27884331 Msa0323630:intron 25.0%
GATGAACAAAATTCCTTTCT+TGG + chr2_4:27879790-27879809 Msa0323630:five_prime_UTR 30.0%
TCAAATAATTACGCCAAGAA+AGG - chr2_4:27879806-27879825 None:intergenic 30.0%
!!! GTTTTGATTTAGGTATGTGT+TGG - chr2_4:27879905-27879924 None:intergenic 30.0%
TGTGACACAATATTTACCAA+GGG - chr2_4:27880031-27880050 None:intergenic 30.0%
TCTAGTATAACTGGATCTAT+AGG - chr2_4:27880117-27880136 None:intergenic 30.0%
!! GAAGGAATTTCTAGTATAAC+TGG - chr2_4:27880126-27880145 None:intergenic 30.0%
! CTTAAGTTTTCACCTGTAAT+TGG - chr2_4:27880182-27880201 None:intergenic 30.0%
CAATTACAGGTGAAAACTTA+AGG + chr2_4:27880180-27880199 Msa0323630:intron 30.0%
TGACAGAATGTGATTAAACT+TGG + chr2_4:27880286-27880305 Msa0323630:intron 30.0%
AATGTGATTAAACTTGGAGA+AGG + chr2_4:27880292-27880311 Msa0323630:CDS 30.0%
AGATGGTTGGATTAAAAGAA+TGG + chr2_4:27880378-27880397 Msa0323630:CDS 30.0%
GTTGGATTAAAAGAATGGTT+AGG + chr2_4:27880383-27880402 Msa0323630:CDS 30.0%
AATGGTTAGGAATGGAAATT+GGG + chr2_4:27880396-27880415 Msa0323630:CDS 30.0%
GAACAATAGGAGTCAATTAT+AGG + chr2_4:27880551-27880570 Msa0323630:intron 30.0%
! GCTCATGCAGAATTTTATAT+TGG - chr2_4:27880578-27880597 None:intergenic 30.0%
! ATAAAAAACGCCATAATGGA+TGG + chr2_4:27880966-27880985 Msa0323630:intron 30.0%
CTACAATTATCCATCCATTA+TGG - chr2_4:27880979-27880998 None:intergenic 30.0%
!! CATAATGGATGGATAATTGT+AGG + chr2_4:27880977-27880996 Msa0323630:intron 30.0%
!! ATAATTTAATGGCGGATAGA+CGG - chr2_4:27881117-27881136 None:intergenic 30.0%
!! AAGCTTTGAAAACACCATTT+AGG - chr2_4:27881215-27881234 None:intergenic 30.0%
TCTTAGTCATTCCAATTTAG+TGG - chr2_4:27881424-27881443 None:intergenic 30.0%
TCTATAGTTTAAATGTGTGG+TGG - chr2_4:27881544-27881563 None:intergenic 30.0%
ATCAATAGATAGTATGGTCA+AGG + chr2_4:27881594-27881613 Msa0323630:intron 30.0%
!! TAATTTTATTTGAGACGCGT+CGG - chr2_4:27881744-27881763 None:intergenic 30.0%
AAGTCAAATGGTAGCATATA+AGG + chr2_4:27882140-27882159 Msa0323630:intron 30.0%
GTATCAAATAATATGAGACG+GGG + chr2_4:27882283-27882302 Msa0323630:intron 30.0%
! TTTTGTTGCAGATAAACGTT+AGG + chr2_4:27882311-27882330 Msa0323630:intron 30.0%
! AGTGTTGCTAGTAACAAATT+TGG + chr2_4:27882428-27882447 Msa0323630:CDS 30.0%
! ACAAATTTGGTTTACACGAT+TGG + chr2_4:27882441-27882460 Msa0323630:CDS 30.0%
! TACTTTAAAAGTTGTCCATG+AGG - chr2_4:27882491-27882510 Msa0323640:three_prime_UTR 30.0%
ATAACTGTCTCATTTAACGT+GGG - chr2_4:27882518-27882537 Msa0323640:three_prime_UTR 30.0%
AATAACTGTCTCATTTAACG+TGG - chr2_4:27882519-27882538 Msa0323640:three_prime_UTR 30.0%
! GATTTTGCTCTTTTCTATAG+GGG + chr2_4:27882639-27882658 Msa0323630:intron 30.0%
GACAATGCTCATTAAACTTA+AGG - chr2_4:27882872-27882891 Msa0323640:intron 30.0%
! TTTGTGAAAGCTTTAACATG+TGG + chr2_4:27882964-27882983 Msa0323630:intron 30.0%
! AAGTTTCTTACATTTGAGAC+CGG - chr2_4:27883128-27883147 Msa0323640:intron 30.0%
! AAGTTTCTTACATTTGAGAC+CGG + chr2_4:27883128-27883147 Msa0323630:intron 30.0%
AGGAAGGACATTAGAAAATT+TGG - chr2_4:27883369-27883388 Msa0323640:intron 30.0%
!! CAATGTTCTGAAAACCAAAA+TGG + chr2_4:27883403-27883422 Msa0323630:intron 30.0%
AACCAAAATGGAAATCGAAT+TGG + chr2_4:27883415-27883434 Msa0323630:intron 30.0%
! TACCAATTCGATTTCCATTT+TGG - chr2_4:27883420-27883439 Msa0323640:intron 30.0%
TACAAACTAAGAACTGATTG+TGG + chr2_4:27883519-27883538 Msa0323630:intron 30.0%
!!! CAAATTCAACTTTTGGAATC+GGG + chr2_4:27883570-27883589 Msa0323630:intron 30.0%
AAATAAACCTCCATAAAAGG+TGG + chr2_4:27883631-27883650 Msa0323630:intron 30.0%
!! TCTTATGTTGTTTCAGAGTT+AGG - chr2_4:27883705-27883724 Msa0323640:intron 30.0%
TTATAATGTTTGGCATAGTG+GGG + chr2_4:27883816-27883835 Msa0323630:intron 30.0%
!! GATGGGTTATACCTAAAATT+TGG + chr2_4:27883866-27883885 Msa0323630:intron 30.0%
! ATCTCCAATGACCAAATTTT+AGG - chr2_4:27883880-27883899 Msa0323640:intron 30.0%
ATATGTCATGTTTCAAGACT+GGG - chr2_4:27883908-27883927 Msa0323640:intron 30.0%
AATATGTCATGTTTCAAGAC+TGG - chr2_4:27883909-27883928 Msa0323640:intron 30.0%
TGGCTAAAAGGAATTAACAA+AGG + chr2_4:27883987-27884006 Msa0323630:CDS 30.0%
!!! GAAACTTTTTTTTTGGTGTC+CGG + chr2_4:27884319-27884338 Msa0323630:intron 30.0%
!!! AAACTTTTTTTTTGGTGTCC+GGG + chr2_4:27884320-27884339 Msa0323630:intron 30.0%
GACAATGCATAATATATGCA+AGG - chr2_4:27884359-27884378 Msa0323640:intron 30.0%
! TATGTTAGTTTCAACCTCTT+CGG - chr2_4:27884402-27884421 Msa0323640:intron 30.0%
TTGATCAGATTAAATAGCCT+TGG - chr2_4:27884634-27884653 Msa0323640:three_prime_UTR 30.0%
GGCAATATTATCAGAAAGTT+TGG + chr2_4:27884697-27884716 Msa0323630:CDS 30.0%
! AGAAAGTTTGGTGATAATGA+AGG + chr2_4:27884709-27884728 Msa0323630:CDS 30.0%
! GAAAGTTTGGTGATAATGAA+GGG + chr2_4:27884710-27884729 Msa0323630:CDS 30.0%
TAAGACTTCCTAAGTAAAGA+TGG - chr2_4:27884777-27884796 Msa0323640:three_prime_UTR 30.0%
AGTCTTAATTCTGACTTTGT+TGG + chr2_4:27884790-27884809 Msa0323630:CDS 30.0%
TGTTCAGATCTTACTGAATA+AGG + chr2_4:27884841-27884860 Msa0323630:three_prime_UTR 30.0%
GTTCAGATCTTACTGAATAA+GGG + chr2_4:27884842-27884861 Msa0323630:three_prime_UTR 30.0%
TTCAGATCTTACTGAATAAG+GGG + chr2_4:27884843-27884862 Msa0323630:three_prime_UTR 30.0%
GTGTGACACAATATTTACCA+AGG - chr2_4:27880032-27880051 None:intergenic 35.0%
TTATCCACACAAACATCTTC+TGG - chr2_4:27880331-27880350 None:intergenic 35.0%
GATGTTTGTGTGGATAAAGA+TGG + chr2_4:27880334-27880353 Msa0323630:CDS 35.0%
CATCTCTTGTAGCTGTATAT+AGG - chr2_4:27880363-27880382 None:intergenic 35.0%
CTATATACAGCTACAAGAGA+TGG + chr2_4:27880361-27880380 Msa0323630:CDS 35.0%
GAATGGTTAGGAATGGAAAT+TGG + chr2_4:27880395-27880414 Msa0323630:CDS 35.0%
ATAGATAGCTCTTCTTTGCT+TGG + chr2_4:27880433-27880452 Msa0323630:CDS 35.0%
GGAATCACTACATCTAAAGA+TGG + chr2_4:27880454-27880473 Msa0323630:CDS 35.0%
ATCACTACATCTAAAGATGG+TGG + chr2_4:27880457-27880476 Msa0323630:CDS 35.0%
GTTATCCTTTCACAAGTGAA+TGG + chr2_4:27880657-27880676 Msa0323630:CDS 35.0%
TTACTTTCACATGACAAGTG+CGG - chr2_4:27880873-27880892 None:intergenic 35.0%
CTACGATTGTCTATCCATTA+TGG - chr2_4:27881302-27881321 None:intergenic 35.0%
!! CATAATGGATAGACAATCGT+AGG + chr2_4:27881300-27881319 Msa0323630:intron 35.0%
CTATGCTATTATCATCTTGC+TGG - chr2_4:27881347-27881366 None:intergenic 35.0%
! GTCATTTAAAATGAGACGGA+GGG - chr2_4:27882057-27882076 None:intergenic 35.0%
ATGGTAGCATATAAGGTTGT+TGG + chr2_4:27882147-27882166 Msa0323630:intron 35.0%
TATTACATCATCTGCAAACC+TGG - chr2_4:27882381-27882400 Msa0323640:three_prime_UTR 35.0%
!! GATGTAATAGAAGCATCAGA+TGG + chr2_4:27882392-27882411 Msa0323630:CDS 35.0%
TGGTTTACACGATTGGTATT+TGG + chr2_4:27882448-27882467 Msa0323630:CDS 35.0%
!! TTGGTATTTGGATTTGCTAG+AGG + chr2_4:27882460-27882479 Msa0323630:CDS 35.0%
CAAGGATGAAGATTATGTTG+CGG + chr2_4:27882580-27882599 Msa0323630:CDS 35.0%
TCATTCAACAATGTCCTAGT+GGG - chr2_4:27882752-27882771 Msa0323640:intron 35.0%
TTCATTCAACAATGTCCTAG+TGG - chr2_4:27882753-27882772 Msa0323640:intron 35.0%
TTAGTATTACTTACTCCCTC+CGG + chr2_4:27882999-27883018 Msa0323630:intron 35.0%
TGTTGTGTTTGAGAGTTAAG+AGG + chr2_4:27883182-27883201 Msa0323630:intron 35.0%
GTTTGAGAGTTAAGAGGAAA+AGG + chr2_4:27883188-27883207 Msa0323630:intron 35.0%
TTAAGAGGAAAAGGAACAAG+TGG + chr2_4:27883197-27883216 Msa0323630:intron 35.0%
TCTAATGTCCTTCCTCAATA+TGG + chr2_4:27883374-27883393 Msa0323630:intron 35.0%
ACATTGCGAAAACCATATTG+AGG - chr2_4:27883389-27883408 Msa0323640:intron 35.0%
TTGGTAAGATCTCTCAATCA+TGG + chr2_4:27883434-27883453 Msa0323630:intron 35.0%
TCTCTCAATCATGGTTCAAT+CGG + chr2_4:27883443-27883462 Msa0323630:intron 35.0%
!! AGAATTTTCAGGATGAAAGG+AGG - chr2_4:27883674-27883693 Msa0323640:intron 35.0%
!! ATGTTGTTTCAGAGTTAGGA+GGG - chr2_4:27883701-27883720 Msa0323640:intron 35.0%
!! TATGTTGTTTCAGAGTTAGG+AGG - chr2_4:27883702-27883721 Msa0323640:intron 35.0%
AGTGGTAACACAATCTAAGA+TGG + chr2_4:27883848-27883867 Msa0323630:intron 35.0%
! GTGGTAACACAATCTAAGAT+GGG + chr2_4:27883849-27883868 Msa0323630:intron 35.0%
AATATCAATCTTGCTCCTGA+TGG + chr2_4:27884053-27884072 Msa0323630:CDS 35.0%
ATTGGGGAAATATTACTGAG+TGG + chr2_4:27884129-27884148 Msa0323630:intron 35.0%
TTGGGGAAATATTACTGAGT+GGG + chr2_4:27884130-27884149 Msa0323630:intron 35.0%
TGCATAATATATGCAAGGTC+CGG - chr2_4:27884354-27884373 Msa0323640:intron 35.0%
ATTGTCCTTAGCTAAACTGA+CGG + chr2_4:27884373-27884392 Msa0323630:intron 35.0%
TGCTGCAGTTAACTTCTAAA+AGG + chr2_4:27884557-27884576 Msa0323630:intron 35.0%
! CAGTTAACTTCTAAAAGGCT+GGG + chr2_4:27884562-27884581 Msa0323630:intron 35.0%
! AGTTAACTTCTAAAAGGCTG+GGG + chr2_4:27884563-27884582 Msa0323630:intron 35.0%
!! AAATGAAGCAAAGAAGTGCT+TGG - chr2_4:27884611-27884630 Msa0323640:three_prime_UTR 35.0%
ACTTCTTTGCTTCATTTCCA+AGG + chr2_4:27884614-27884633 Msa0323630:CDS 35.0%
TAGTGCAACAAAATCAGCTA+TGG + chr2_4:27884654-27884673 Msa0323630:CDS 35.0%
!! AAGTTTTGTAACTTCAGCTG+TGG + chr2_4:27884741-27884760 Msa0323630:CDS 35.0%
TTTGAGGACCATCTTTACTT+AGG + chr2_4:27884766-27884785 Msa0323630:CDS 35.0%
!! GGAAGGAGGATTGGTTATAT+TGG - chr2_4:27880007-27880026 None:intergenic 40.0%
CAATATTTACCAAGGGTGGA+AGG - chr2_4:27880024-27880043 None:intergenic 40.0%
GACACAATATTTACCAAGGG+TGG - chr2_4:27880028-27880047 None:intergenic 40.0%
ACAACCAGAAGATGTTTGTG+TGG + chr2_4:27880324-27880343 Msa0323630:CDS 40.0%
ATACAGCTACAAGAGATGGT+TGG + chr2_4:27880365-27880384 Msa0323630:CDS 40.0%
GGAATGGAAATTGGGAGAAT+TGG + chr2_4:27880404-27880423 Msa0323630:CDS 40.0%
CATTGTCTGTGATACTACCT+TGG + chr2_4:27880483-27880502 Msa0323630:CDS 40.0%
!! TATTTTGCAGGGTTTGCTCA+AGG + chr2_4:27880614-27880633 Msa0323630:intron 40.0%
TTGCTCAAGGTTACAGAAGA+CGG + chr2_4:27880627-27880646 Msa0323630:CDS 40.0%
GAGAACCATTCACTTGTGAA+AGG - chr2_4:27880665-27880684 None:intergenic 40.0%
! TGGTCTACAATTTGAAACCC+TGG - chr2_4:27880795-27880814 None:intergenic 40.0%
TTGTAGACCATCACATGATG+TGG + chr2_4:27880805-27880824 Msa0323630:intron 40.0%
TGTAGACCATCACATGATGT+GGG + chr2_4:27880806-27880825 Msa0323630:intron 40.0%
AACACCATTTAGGTGAGTTG+AGG - chr2_4:27881205-27881224 None:intergenic 40.0%
! TGGTCAAGGTAATGTCGATT+AGG + chr2_4:27881608-27881627 Msa0323630:intron 40.0%
!! TGTCGATTAGGCTGATTTGA+TGG + chr2_4:27881620-27881639 Msa0323630:intron 40.0%
!! GTCGATTAGGCTGATTTGAT+GGG + chr2_4:27881621-27881640 Msa0323630:intron 40.0%
!! TCGATTAGGCTGATTTGATG+GGG + chr2_4:27881622-27881641 Msa0323630:intron 40.0%
! GGTCATTTAAAATGAGACGG+AGG - chr2_4:27882058-27882077 None:intergenic 40.0%
CGCAACATAATCTTCATCCT+TGG - chr2_4:27882582-27882601 Msa0323640:three_prime_UTR 40.0%
GCAACTCATCTTTGCTCAAA+TGG - chr2_4:27882697-27882716 Msa0323640:intron 40.0%
!! TTAAAAGGTTGATGCCCACT+AGG + chr2_4:27882735-27882754 Msa0323630:intron 40.0%
! TTCTTACATTTGAGACCGGA+GGG - chr2_4:27883132-27883151 Msa0323640:intron 40.0%
! TTTCTTACATTTGAGACCGG+AGG - chr2_4:27883131-27883150 Msa0323640:intron 40.0%
! TTTCTTACATTTGAGACCGG+AGG + chr2_4:27883131-27883150 Msa0323630:intron 40.0%
! TTCTTACATTTGAGACCGGA+GGG + chr2_4:27883132-27883151 Msa0323630:intron 40.0%
! GAAAAGGAACAAGTGGACTT+TGG + chr2_4:27883204-27883223 Msa0323630:intron 40.0%
GAAATATCCACCACCTTGTT+TGG + chr2_4:27883276-27883295 Msa0323630:intron 40.0%
!! CAAAAGCACTCTTCCAAACA+AGG - chr2_4:27883292-27883311 Msa0323640:intron 40.0%
TGCGAAAACCATATTGAGGA+AGG - chr2_4:27883385-27883404 Msa0323640:intron 40.0%
TGGTTCAATCGGTTGAATCA+CGG + chr2_4:27883454-27883473 Msa0323630:intron 40.0%
TGAATCACGGATGCATGAAT+AGG + chr2_4:27883467-27883486 Msa0323630:intron 40.0%
!!! ATTCAACTTTTGGAATCGGG+CGG + chr2_4:27883573-27883592 Msa0323630:intron 40.0%
ATGAAAGGAGGACAAAATGG+AGG - chr2_4:27883662-27883681 Msa0323640:intron 40.0%
AGGATGAAAGGAGGACAAAA+TGG - chr2_4:27883665-27883684 Msa0323640:intron 40.0%
! AGGAGGGGAATAGAATTTTC+AGG - chr2_4:27883685-27883704 Msa0323640:intron 40.0%
!! TGTTGTTTCAGAGTTAGGAG+GGG - chr2_4:27883700-27883719 Msa0323640:intron 40.0%
! ATAGTGGGGTAACTTGATAG+TGG + chr2_4:27883830-27883849 Msa0323630:intron 40.0%
ATCTTCATTGAAAACCTCCC+TGG + chr2_4:27884020-27884039 Msa0323630:CDS 40.0%
GGAGCAAGATTGATATTGTC+AGG - chr2_4:27884050-27884069 Msa0323640:three_prime_UTR 40.0%
CATAATATATGCAAGGTCCG+GGG - chr2_4:27884352-27884371 Msa0323640:intron 40.0%
GCATAATATATGCAAGGTCC+GGG - chr2_4:27884353-27884372 Msa0323640:intron 40.0%
TTGTCCTTAGCTAAACTGAC+GGG + chr2_4:27884374-27884393 Msa0323630:intron 40.0%
! GCAGTTAACTTCTAAAAGGC+TGG + chr2_4:27884561-27884580 Msa0323630:intron 40.0%
! GAAGTGCTTGGATACTTTAG+AGG - chr2_4:27884599-27884618 Msa0323640:three_prime_UTR 40.0%
TGCAACAAAATCAGCTATGG+TGG + chr2_4:27884657-27884676 Msa0323630:CDS 40.0%
TCAGCTATGGTGGTAAATGT+TGG + chr2_4:27884667-27884686 Msa0323630:CDS 40.0%
GTGGTAAATGTTGGAACTGA+AGG + chr2_4:27884676-27884695 Msa0323630:CDS 40.0%
! GTTTGGTGATAATGAAGGGA+AGG + chr2_4:27884714-27884733 Msa0323630:CDS 40.0%
CATCACTATGCAATTGACAG+TGG - chr2_4:27884823-27884842 Msa0323640:three_prime_UTR 40.0%
AGAGCTATTAGCCGAACTCA+CGG + chr2_4:27879847-27879866 Msa0323630:five_prime_UTR 45.0%
TGGAGAGTTATCCGTGAGTT+CGG - chr2_4:27879861-27879880 None:intergenic 45.0%
ATAACTCTCCAGTCCAGAGA+AGG + chr2_4:27879870-27879889 Msa0323630:five_prime_UTR 45.0%
ATCTGTTTCCTTCTCTGGAC+TGG - chr2_4:27879881-27879900 None:intergenic 45.0%
TTGGCATCTGTTTCCTTCTC+TGG - chr2_4:27879886-27879905 None:intergenic 45.0%
TATTTACCAAGGGTGGAAGG+AGG - chr2_4:27880021-27880040 None:intergenic 45.0%
GAAGTTGAAGATGCAGCAGA+AGG - chr2_4:27880144-27880163 None:intergenic 45.0%
AGTGTTACAAGCAGTCAACC+AGG + chr2_4:27880774-27880793 Msa0323630:intron 45.0%
GTGTTACAAGCAGTCAACCA+GGG + chr2_4:27880775-27880794 Msa0323630:intron 45.0%
AAGTGGATAGACAAGCTCGT+TGG + chr2_4:27881088-27881107 Msa0323630:intron 45.0%
! CCATTTAGGTGAGTTGAGGT+CGG - chr2_4:27881201-27881220 None:intergenic 45.0%
ATCGTGAGAGCTCACACAAA+AGG - chr2_4:27881250-27881269 None:intergenic 45.0%
!! TGTGGTGGACAAGATAGAGT+AGG - chr2_4:27881529-27881548 None:intergenic 45.0%
AAAACAAGAGCTCGGGTTCA+AGG - chr2_4:27881899-27881918 None:intergenic 45.0%
!! AAATGGTGTTGCACTGTCCA+AGG + chr2_4:27882562-27882581 Msa0323630:CDS 45.0%
! AGGAACAAGTGGACTTTGGA+AGG + chr2_4:27883208-27883227 Msa0323630:intron 45.0%
! GGAACAAGTGGACTTTGGAA+GGG + chr2_4:27883209-27883228 Msa0323630:intron 45.0%
GAGAGGAGAGAGAAGAGAAA+AGG + chr2_4:27883236-27883255 Msa0323630:intron 45.0%
AAGCACTCTTCCAAACAAGG+TGG - chr2_4:27883289-27883308 Msa0323640:intron 45.0%
!! GGAGTATCCACCTTTTATGG+AGG - chr2_4:27883641-27883660 Msa0323640:intron 45.0%
!!! GGAGGAGTATCCACCTTTTA+TGG - chr2_4:27883644-27883663 Msa0323640:intron 45.0%
TAACCAGATTCAGGTGTGTG+AGG + chr2_4:27883961-27883980 Msa0323630:intron 45.0%
!! TGTGTGAGGCATTGGCTAAA+AGG + chr2_4:27883975-27883994 Msa0323630:CDS 45.0%
TTCATTGAAAACCTCCCTGG+TGG + chr2_4:27884023-27884042 Msa0323630:CDS 45.0%
TGATATTGTCAGGTCCACCA+GGG - chr2_4:27884040-27884059 Msa0323640:three_prime_UTR 45.0%
TTGATATTGTCAGGTCCACC+AGG - chr2_4:27884041-27884060 Msa0323640:three_prime_UTR 45.0%
! TTGCTCCTGATGGCTCATTT+TGG + chr2_4:27884063-27884082 Msa0323630:CDS 45.0%
! TGGCTCATTTTGGATCGCTT+TGG + chr2_4:27884073-27884092 Msa0323630:CDS 45.0%
TGTCCTTAGCTAAACTGACG+GGG + chr2_4:27884375-27884394 Msa0323630:intron 45.0%
AACTTCAGCTGTGGAGTTTG+AGG + chr2_4:27884750-27884769 Msa0323630:CDS 45.0%
!!! AAAAAGATTTTTTTTTTTTA+GGG - chr2_4:27882947-27882966 Msa0323640:intron 5.0%
CGCACACAGCTTGTAAAGCA+TGG + chr2_4:27879978-27879997 Msa0323630:exon 50.0%
TGTCACACTGACCTCAAGCT+TGG + chr2_4:27880044-27880063 Msa0323630:CDS 50.0%
AGCTGCTAGAACCAAGCTTG+AGG - chr2_4:27880058-27880077 None:intergenic 50.0%
ATTGCGCCCACATCATGTGA+TGG - chr2_4:27880815-27880834 None:intergenic 50.0%
CCGACCTCAACTCACCTAAA+TGG + chr2_4:27881198-27881217 Msa0323630:intron 50.0%
GGTGGACAAGATAGAGTAGG+TGG - chr2_4:27881526-27881545 None:intergenic 50.0%
TTGCTAGAGGCAAGACCTCA+TGG + chr2_4:27882473-27882492 Msa0323630:CDS 50.0%
ATGTTGCGGTGTGCGAAACT+TGG + chr2_4:27882594-27882613 Msa0323630:CDS 50.0%
! GACTTTGGAAGGGATGAGAG+AGG + chr2_4:27883219-27883238 Msa0323630:intron 50.0%
CACTCTTCCAAACAAGGTGG+TGG - chr2_4:27883286-27883305 Msa0323640:intron 50.0%
ATGCCTCACACACCTGAATC+TGG - chr2_4:27883967-27883986 Msa0323640:intron 50.0%
GATTCAGGTGTGTGAGGCAT+TGG + chr2_4:27883967-27883986 Msa0323630:intron 50.0%
GCGATCCAAAATGAGCCATC+AGG - chr2_4:27884071-27884090 Msa0323640:three_prime_UTR 50.0%
ACCAATCCTCCTTCCACCCT+TGG + chr2_4:27880012-27880031 Msa0323630:CDS 55.0%
ACCAAGGGTGGAAGGAGGAT+TGG - chr2_4:27880016-27880035 None:intergenic 55.0%
CAAGAGCTCGGGTTCAAGGA+TGG - chr2_4:27881895-27881914 None:intergenic 55.0%
TATTGTCAGGTCCACCAGGG+AGG - chr2_4:27884037-27884056 Msa0323640:three_prime_UTR 55.0%
GGTCCCCGTCAGTTTAGCTA+AGG - chr2_4:27884381-27884400 Msa0323640:intron 55.0%
TAAACTGACGGGGACCGAAG+AGG + chr2_4:27884385-27884404 Msa0323630:intron 55.0%
GCAGTGTCCGCGACTGTATG+TGG + chr2_4:27880847-27880866 Msa0323630:intron 60.0%
AGTGCGGCCACATACAGTCG+CGG - chr2_4:27880857-27880876 None:intergenic 60.0%
GCGGACACTGCTGCGACTGT+AGG - chr2_4:27880838-27880857 None:intergenic 65.0%
TGGTGTCCGGGTTCGAACCC+CGG + chr2_4:27884332-27884351 Msa0323630:intron 65.0%
CAAGGTCCGGGGTTCGAACC+CGG - chr2_4:27884341-27884360 Msa0323640:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 27879782 27884987 27879782 ID=Msa0323630;Name=Msa0323630
chr2_4 mRNA 27879782 27884987 27879782 ID=Msa0323630-mRNA-1;Parent=Msa0323630;Name=Msa0323630-mRNA-1;_AED=0.28;_eAED=0.28;_QI=215|1|1|1|1|1|6|150|371
chr2_4 exon 27879782 27880188 27879782 ID=Msa0323630-mRNA-1:exon:9624;Parent=Msa0323630-mRNA-1
chr2_4 exon 27880292 27880504 27880292 ID=Msa0323630-mRNA-1:exon:9625;Parent=Msa0323630-mRNA-1
chr2_4 exon 27880624 27880691 27880624 ID=Msa0323630-mRNA-1:exon:9626;Parent=Msa0323630-mRNA-1
chr2_4 exon 27882382 27882618 27882382 ID=Msa0323630-mRNA-1:exon:9627;Parent=Msa0323630-mRNA-1
chr2_4 exon 27883968 27884100 27883968 ID=Msa0323630-mRNA-1:exon:9628;Parent=Msa0323630-mRNA-1
chr2_4 exon 27884565 27884987 27884565 ID=Msa0323630-mRNA-1:exon:9629;Parent=Msa0323630-mRNA-1
chr2_4 five_prime_UTR 27879782 27879996 27879782 ID=Msa0323630-mRNA-1:five_prime_utr;Parent=Msa0323630-mRNA-1
chr2_4 CDS 27879997 27880188 27879997 ID=Msa0323630-mRNA-1:cds;Parent=Msa0323630-mRNA-1
chr2_4 CDS 27880292 27880504 27880292 ID=Msa0323630-mRNA-1:cds;Parent=Msa0323630-mRNA-1
chr2_4 CDS 27880624 27880691 27880624 ID=Msa0323630-mRNA-1:cds;Parent=Msa0323630-mRNA-1
chr2_4 CDS 27882382 27882618 27882382 ID=Msa0323630-mRNA-1:cds;Parent=Msa0323630-mRNA-1
chr2_4 CDS 27883968 27884100 27883968 ID=Msa0323630-mRNA-1:cds;Parent=Msa0323630-mRNA-1
chr2_4 CDS 27884565 27884837 27884565 ID=Msa0323630-mRNA-1:cds;Parent=Msa0323630-mRNA-1
chr2_4 three_prime_UTR 27884838 27884987 27884838 ID=Msa0323630-mRNA-1:three_prime_utr;Parent=Msa0323630-mRNA-1
Gene Sequence

>Msa0323630

ATGGCTTCCAATATAACCAATCCTCCTTCCACCCTTGGTAAATATTGTGTCACACTGACCTCAAGCTTGGTTCTAGCAGCTTTAGTTGCTCTTACAGTTCAAGTCTTCTACTTCTCACCTATAGATCCAGTTATACTAGAAATTCCTTCTGCTGCATCTTCAACTTCTTCATTCAAAAACAACCAATTACAGAATGTGATTAAACTTGGAGAAGGATTTCTGAAACAACCAGAAGATGTTTGTGTGGATAAAGATGGTGTCCTATATACAGCTACAAGAGATGGTTGGATTAAAAGAATGGTTAGGAATGGAAATTGGGAGAATTGGAAGCATATAGATAGCTCTTCTTTGCTTGGAATCACTACATCTAAAGATGGTGGTCTCATTGTCTGTGATACTACCTTGGGTTTGCTCAAGGTTACAGAAGACGGTTTCAGTGTTATCCTTTCACAAGTGAATGGTTCTCAATTAATGTTTGCAGATGATGTAATAGAAGCATCAGATGGAAATATATACTTCAGTGTTGCTAGTAACAAATTTGGTTTACACGATTGGTATTTGGATTTGCTAGAGGCAAGACCTCATGGACAACTTTTAAAGTATAATCCCACGTTAAATGAGACAGTTATTGTCATTGATAATTTGACATTTGCAAATGGTGTTGCACTGTCCAAGGATGAAGATTATGTTGCGGTGTGCGAAACTTGGAAATTCAGGTGTGTGAGGCATTGGCTAAAAGGAATTAACAAAGGCAAAACAGATATCTTCATTGAAAACCTCCCTGGTGGACCTGACAATATCAATCTTGCTCCTGATGGCTCATTTTGGATCGCTTTGGTTCAATTAACTTCTAAAAGGCTGGGGTTTGTGCACACCTCTAAAGTATCCAAGCACTTCTTTGCTTCATTTCCAAGGCTATTTAATCTGATCAATAGTGCAACAAAATCAGCTATGGTGGTAAATGTTGGAACTGAAGGCAATATTATCAGAAAGTTTGGTGATAATGAAGGGAAGGTGATAAGTTTTGTAACTTCAGCTGTGGAGTTTGAGGACCATCTTTACTTAGGAAGTCTTAATTCTGACTTTGTTGGAAAATTGCCACTGTCAATTGCATAG

Protein sequence

>Msa0323630

MASNITNPPSTLGKYCVTLTSSLVLAALVALTVQVFYFSPIDPVILEIPSAASSTSSFKNNQLQNVIKLGEGFLKQPEDVCVDKDGVLYTATRDGWIKRMVRNGNWENWKHIDSSSLLGITTSKDGGLIVCDTTLGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVASNKFGLHDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVAVCETWKFRCVRHWLKGINKGKTDIFIENLPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSKVSKHFFASFPRLFNLINSATKSAMVVNVGTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPLSIA*