AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0203180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203180 MtrunA17_Chr2g0300861 91.914 371 30 0 1 371 1 371 0.0 685
Msa0203180 MtrunA17_Chr2g0300851 85.070 355 50 1 17 371 1 352 0.0 625
Msa0203180 MtrunA17_Chr2g0300841 83.286 353 58 1 20 371 8 360 0.0 603
Msa0203180 MtrunA17_Chr8g0370791 33.333 345 216 10 29 366 27 364 3.98e-53 180
Msa0203180 MtrunA17_Chr8g0370761 32.486 354 223 9 22 366 18 364 1.29e-48 168
Msa0203180 MtrunA17_Chr8g0370771 32.636 239 140 5 136 366 4 229 6.05e-37 134
Msa0203180 MtrunA17_Chr4g0025341 31.600 250 158 4 124 364 142 387 7.77e-34 129
Msa0203180 MtrunA17_Chr2g0329531 27.562 283 193 6 96 367 124 405 4.62e-31 122
Msa0203180 MtrunA17_Chr7g0256601 30.522 249 163 5 126 365 167 414 1.30e-30 120
Msa0203180 MtrunA17_Chr7g0256591 28.958 259 154 6 126 365 136 383 2.75e-28 114
Msa0203180 MtrunA17_Chr7g0256581 33.597 253 148 8 124 364 121 365 2.91e-28 113
Msa0203180 MtrunA17_Chr2g0322241 31.200 250 159 8 124 364 146 391 3.36e-28 114
Msa0203180 MtrunA17_Chr7g0256571 29.114 316 192 10 77 364 54 365 1.97e-27 111
Msa0203180 MtrunA17_Chr4g0062001 36.478 159 97 3 124 279 110 267 4.49e-25 104
Msa0203180 MtrunA17_Chr7g0256561 28.279 244 135 4 124 364 125 331 1.26e-23 100
Msa0203180 MtrunA17_Chr8g0376581 35.220 159 99 3 124 279 108 265 2.42e-23 99.4
Msa0203180 MtrunA17_Chr4g0062031 36.145 166 99 4 124 283 109 273 3.27e-22 95.9
Msa0203180 MtrunA17_Chr2g0307721 37.107 159 93 5 126 279 120 276 1.45e-21 96.7
Msa0203180 MtrunA17_Chr2g0307721 36.306 157 93 5 128 279 574 728 1.84e-17 84.3
Msa0203180 MtrunA17_Chr8g0370801 39.623 106 59 1 135 235 2 107 2.00e-21 88.2
Msa0203180 MtrunA17_Chr4g0062021 35.032 157 96 4 128 279 126 281 2.78e-21 93.6
Msa0203180 MtrunA17_Chr5g0443561 28.920 287 153 8 89 364 73 319 4.98e-21 92.4
Msa0203180 MtrunA17_Chr4g0020271 37.398 123 75 2 158 279 1 122 5.97e-21 89.7
Msa0203180 MtrunA17_Chr4g0061871 35.714 84 53 1 196 279 31 113 7.62e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0203180 AT3G51420.1 31.198 359 225 11 22 368 13 361 2.96e-48 167
Msa0203180 AT3G51430.2 29.319 382 225 11 8 368 2 359 8.73e-47 163
Msa0203180 AT3G51430.1 29.427 384 224 12 8 368 2 361 1.56e-46 163
Msa0203180 AT3G51440.1 31.903 373 212 12 15 368 12 361 2.43e-46 162
Msa0203180 AT3G51450.1 29.539 369 226 12 20 368 7 361 2.38e-41 149
Msa0203180 AT3G57020.2 28.977 352 206 14 43 358 2 345 2.23e-33 127
Msa0203180 AT1G08470.1 27.624 362 205 12 46 364 38 385 1.60e-31 123
Msa0203180 AT3G57020.1 31.907 257 151 9 118 358 111 359 1.80e-31 122
Msa0203180 AT3G59530.3 25.628 398 236 13 15 370 20 399 4.11e-31 122
Msa0203180 AT3G59530.2 25.628 398 236 13 15 370 20 399 4.11e-31 122
Msa0203180 AT3G59530.1 25.628 398 236 13 15 370 20 399 4.11e-31 122
Msa0203180 AT5G22020.3 30.620 258 150 5 124 364 146 391 4.64e-31 122
Msa0203180 AT5G22020.1 30.620 258 150 5 124 364 146 391 4.64e-31 122
Msa0203180 AT5G22020.2 30.620 258 150 5 124 364 146 391 4.64e-31 122
Msa0203180 AT3G57010.1 32.245 245 153 9 124 358 119 360 1.27e-30 120
Msa0203180 AT3G57030.1 31.474 251 158 5 124 364 124 370 2.28e-30 119
Msa0203180 AT2G41300.1 32.400 250 158 8 118 358 136 383 1.59e-29 117
Msa0203180 AT2G41290.1 29.771 262 167 8 118 364 113 372 2.16e-24 103
Msa0203180 AT1G74010.1 26.899 316 179 11 77 368 38 325 8.26e-19 86.7
Msa0203180 AT1G74000.1 26.744 258 141 8 123 368 108 329 6.01e-18 84.3
Msa0203180 AT1G74020.1 27.059 255 142 8 124 368 107 327 5.95e-17 81.3

Find 93 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAATATTATCAGAAAATT+TGG 0.155828 2_1:+26834899 Msa0203180:CDS
GAATGGTTAGAAATGGAAAT+TGG 0.206093 2_1:+26830093 Msa0203180:CDS
TCGCTCCTGATGGCTCATTT+TGG 0.246420 2_1:+26834271 Msa0203180:CDS
TGGTTTACACGATTGGTATT+TGG 0.262285 2_1:+26832796 Msa0203180:CDS
TTCTAGCAAAACTGGATCTA+TGG 0.267221 2_1:-26829818 None:intergenic
TGTTCAGATCTTACTGAATA+AGG 0.284044 2_1:+26835043 Msa0203180:three_prime_UTR
GTGGTGTTGGTTTGTATGAT+TGG 0.290069 2_1:-26829595 None:intergenic
TGCTGCAGTTAACTTCTAAA+AGG 0.294138 2_1:+26834759 Msa0203180:intron
GAAATGGAAATTGGGAGAAT+TGG 0.304056 2_1:+26830102 Msa0203180:CDS
GAAAGGAGGATTGGTTATAT+TGG 0.304443 2_1:-26829707 None:intergenic
AGTGTTGCTAGTAACAAATT+TGG 0.314925 2_1:+26832776 Msa0203180:CDS
TCATCCACACAAACATCTTC+TGG 0.317516 2_1:-26830026 None:intergenic
ACACTATATGCAATATATAA+AGG 0.343061 2_1:+26829655 Msa0203180:five_prime_UTR
GGTGGTATTTCTAGCAAAAC+TGG 0.361365 2_1:-26829826 None:intergenic
AGTCTTAATTCTGACTTTGT+TGG 0.375736 2_1:+26834992 Msa0203180:CDS
GAAGTGCTTGGATACTTTAG+AGG 0.389941 2_1:-26834798 Msa0203190:three_prime_UTR
GTTCAGATCTTACTGAATAA+GGG 0.391333 2_1:+26835044 Msa0203180:three_prime_UTR
ATTAAAAGAATGGTTAGAAA+TGG 0.392540 2_1:+26830086 Msa0203180:CDS
AATGGTTAGAAATGGAAATT+GGG 0.411141 2_1:+26830094 Msa0203180:CDS
TGTGTGAGGCATTGGCTAAA+AGG 0.415735 2_1:+26834183 Msa0203180:CDS
TTGCTCAAGGTTACAGAAGA+AGG 0.424204 2_1:+26830438 Msa0203180:CDS
AGAAAATTTGGTGATAATGA+AGG 0.432823 2_1:+26834911 Msa0203180:CDS
ACAAATTTGGTTTACACGAT+TGG 0.435403 2_1:+26832789 Msa0203180:CDS
GATTTAGGTGTGTGAGGCAT+TGG 0.440927 2_1:+26834175 Msa0203180:intron
GCAGTTAACTTCTAAAAGGC+TGG 0.443325 2_1:+26834763 Msa0203180:intron
TTGATCAGATTAAATAGCCT+TGG 0.444628 2_1:-26834833 Msa0203190:three_prime_UTR
AGATGGTTGGATTAAAAGAA+TGG 0.447747 2_1:+26830076 Msa0203180:CDS
GTTATCCTTTCACAAGTGAA+TGG 0.449739 2_1:+26830468 Msa0203180:CDS
AACTTCAGCTGTGGAGTTCG+AGG 0.458627 2_1:+26834952 Msa0203180:CDS
CACAACATAATCTTCATCCT+TGG 0.459374 2_1:-26832927 Msa0203190:three_prime_UTR
ACCAGGAGTGAAAGGAGGAT+TGG 0.468208 2_1:-26829716 None:intergenic
ACCAATCCTCCTTTCACTCC+TGG 0.472704 2_1:+26829715 Msa0203180:CDS
CAGTTAACTTCTAAAAGGCT+GGG 0.484127 2_1:+26834764 Msa0203180:intron
TTGTGTTGGTCTGGTGGTGT+TGG 0.489799 2_1:-26829608 None:intergenic
TGTCACACTCACCTCAACCT+TGG 0.497810 2_1:+26829747 Msa0203180:CDS
TAACAGAATGTGATTAAACT+TGG 0.498645 2_1:+26829984 Msa0203180:intron
TTGATATTGTCAGGTCCACC+AGG 0.502069 2_1:-26834246 Msa0203190:three_prime_UTR
GCGATCCAAAATGAGCCATC+AGG 0.504819 2_1:-26834276 Msa0203190:three_prime_UTR
GATAATTTGACATTTGCAAA+TGG 0.505703 2_1:+26832893 Msa0203180:CDS
TTGCTAGAGGCAAGACCTCA+TGG 0.506453 2_1:+26832821 Msa0203180:CDS
ATAACCCACTTGTGTTGGTC+TGG 0.507277 2_1:-26829617 None:intergenic
GGAGCGAGATTGATATTGTC+AGG 0.510765 2_1:-26834255 Msa0203190:three_prime_UTR
TAAGACTTCCTAGGTAAAGA+TGG 0.512125 2_1:-26834976 Msa0203190:three_prime_UTR
TCTAGCAAAACTGGATCTAT+GGG 0.513366 2_1:-26829817 None:intergenic
TCAGCTATGGTGGTAAATGT+TGG 0.514317 2_1:+26834869 Msa0203180:CDS
AGTCAGAATTAAGACTTCCT+AGG 0.516302 2_1:-26834985 Msa0203190:three_prime_UTR
GAAAATTTGGTGATAATGAA+GGG 0.527905 2_1:+26834912 Msa0203180:CDS
AAATGAAGCAAAGAAGTGCT+TGG 0.534736 2_1:-26834810 Msa0203190:three_prime_UTR
ATGTTGTGGTGTGCGAAACT+TGG 0.535986 2_1:+26832942 Msa0203180:CDS
CAAAATTTACCAGGAGTGAA+AGG 0.536316 2_1:-26829724 None:intergenic
ACTTCTTTGCTTCATTTCCA+AGG 0.538170 2_1:+26834816 Msa0203180:CDS
GAAATTGAAAATACAGATGG+TGG 0.543105 2_1:-26829844 None:intergenic
ATCTTCATTGAAAACCTCCC+TGG 0.556484 2_1:+26834228 Msa0203180:CDS
AATGTGATTAAACTTGGAGA+AGG 0.561564 2_1:+26829990 Msa0203180:CDS
TAGTGCAACAAAATCAGCTA+TGG 0.562467 2_1:+26834856 Msa0203180:CDS
AGCTGCTAGAACCAAGGTTG+AGG 0.564727 2_1:-26829758 None:intergenic
GAGAACCATTCACTTGTGAA+AGG 0.565917 2_1:-26830473 None:intergenic
ACCCACTTGTGTTGGTCTGG+TGG 0.565980 2_1:-26829614 None:intergenic
CATTGTCTGTGATACTACCT+TGG 0.569110 2_1:+26830181 Msa0203180:CDS
GGAATCACTACATCTAAAGA+TGG 0.570283 2_1:+26830152 Msa0203180:CDS
AACTAAAGCTGCTAGAACCA+AGG 0.570761 2_1:-26829764 None:intergenic
AATATCAATCTCGCTCCTGA+TGG 0.577306 2_1:+26834261 Msa0203180:CDS
GTGGTAAATGTTGGAACTGA+AGG 0.578101 2_1:+26834878 Msa0203180:CDS
TAACCAGATTTAGGTGTGTG+AGG 0.578868 2_1:+26834169 Msa0203180:intron
TTCAGATCTTACTGAATAAG+GGG 0.581317 2_1:+26835045 Msa0203180:three_prime_UTR
CACCACCAGACCAACACAAG+TGG 0.581924 2_1:+26829612 Msa0203180:five_prime_UTR
TTGGTATTTGGATTTGCTAG+AGG 0.584211 2_1:+26832808 Msa0203180:CDS
TGCAACAAAATCAGCTATGG+TGG 0.585649 2_1:+26834859 Msa0203180:CDS
AACACACAGCTTCTAAAGCA+TGG 0.587286 2_1:+26829681 Msa0203180:exon
ATACAGCTACAAGAGATGGT+TGG 0.588555 2_1:+26830063 Msa0203180:CDS
GATGTAATAGAAGCATCAGA+TGG 0.591553 2_1:+26832740 Msa0203180:CDS
ATTTGGTGATAATGAAGGGA+AGG 0.598760 2_1:+26834916 Msa0203180:CDS
TTGTATACAGCTACAAGAGA+TGG 0.599124 2_1:+26830059 Msa0203180:CDS
TACTTTAAAAGTTGTCCATG+AGG 0.601518 2_1:-26832836 Msa0203190:three_prime_UTR
AGTTAACTTCTAAAAGGCTG+GGG 0.604881 2_1:+26834765 Msa0203180:intron
GATGTTTGTGTGGATGAAGA+TGG 0.612087 2_1:+26830032 Msa0203180:CDS
GATGAATAACCCACTTGTGT+TGG 0.612869 2_1:-26829622 None:intergenic
GAAGAAATTGAAAATACAGA+TGG 0.625075 2_1:-26829847 None:intergenic
TGGCTAAAAGGAATTAACAA+AGG 0.629911 2_1:+26834195 Msa0203180:CDS
AAATGGTGTTGCACTGTCCA+AGG 0.631186 2_1:+26832910 Msa0203180:CDS
TTCGAGGACCATCTTTACCT+AGG 0.636330 2_1:+26834968 Msa0203180:CDS
AGTGTGACACAAAATTTACC+AGG 0.638833 2_1:-26829733 None:intergenic
ATCACTACATCTAAAGATGG+TGG 0.642182 2_1:+26830155 Msa0203180:CDS
TTCATTGAAAACCTCCCTGG+TGG 0.642285 2_1:+26834231 Msa0203180:CDS
ATAACTGTCTCATTTAACGT+GGG 0.647464 2_1:-26832863 Msa0203190:three_prime_UTR
ACCACCAGACCAACACAAGT+GGG 0.647520 2_1:+26829613 Msa0203180:five_prime_UTR
AATTTACCAGGAGTGAAAGG+AGG 0.657241 2_1:-26829721 None:intergenic
AATAACTGTCTCATTTAACG+TGG 0.678986 2_1:-26832864 Msa0203190:three_prime_UTR
GCAACCAGAAGATGTTTGTG+TGG 0.680006 2_1:+26830022 Msa0203180:CDS
TATTGTCAGGTCCACCAGGG+AGG 0.702604 2_1:-26834242 Msa0203190:three_prime_UTR
CATCACTATGCAATTGACAG+TGG 0.707140 2_1:-26835022 Msa0203190:three_prime_UTR
TGATATTGTCAGGTCCACCA+GGG 0.707648 2_1:-26834245 Msa0203190:three_prime_UTR
CAAGGATGAAGATTATGTTG+TGG 0.724530 2_1:+26832928 Msa0203180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATTCATGTAAATT+TGG + chr2_1:26830264-26830283 Msa0203180:intron 10.0%
!!! ATTTTAAAGTAAAACAAAAT+TGG + chr2_1:26830997-26831016 Msa0203180:intron 10.0%
!! TATAACAATATATATCTAAA+AGG + chr2_1:26831112-26831131 Msa0203180:intron 10.0%
!! CATCAAATATTATAATTTAA+TGG - chr2_1:26831375-26831394 None:intergenic 10.0%
!! ATAATTCACATTATAAAATT+AGG - chr2_1:26832432-26832451 None:intergenic 10.0%
!!! AAATAAAAAATATCTTTTTG+TGG + chr2_1:26833310-26833329 Msa0203180:intron 10.0%
!!! TTTATAACTAGTATTTTATT+TGG + chr2_1:26833535-26833554 Msa0203180:intron 10.0%
!! TTATAAAGATTTATAAAGTT+TGG + chr2_1:26834021-26834040 Msa0203180:intron 10.0%
!! GTTACTTAAATTTAAAAAAA+TGG + chr2_1:26834421-26834440 Msa0203180:intron 10.0%
!! ATAAATAAATAAAAAAGCAA+AGG + chr2_1:26834691-26834710 Msa0203180:intron 10.0%
!!! GAATTTTCTTAAGAATATTT+AGG + chr2_1:26830348-26830367 Msa0203180:intron 15.0%
!! TTACAAATAAAACTAAAGTA+AGG - chr2_1:26831278-26831297 None:intergenic 15.0%
!! CAAATATTATAATTTAATGG+CGG - chr2_1:26831372-26831391 None:intergenic 15.0%
!! TTTATAAAAAAACACCATAA+TGG + chr2_1:26831524-26831543 Msa0203180:intron 15.0%
!! ATACTATCTATTGATAAAAT+AGG - chr2_1:26831821-26831840 None:intergenic 15.0%
!!! TATTTTATCAATAGATAGTA+TGG + chr2_1:26831820-26831839 Msa0203180:intron 15.0%
!!! TTTCTATATTGATTTTTTGA+GGG - chr2_1:26831991-26832010 None:intergenic 15.0%
!!! TTTTCTATATTGATTTTTTG+AGG - chr2_1:26831992-26832011 None:intergenic 15.0%
!! TTAAAATATCTTTAATCTTC+TGG - chr2_1:26832182-26832201 None:intergenic 15.0%
!!! ATAGTTTAAGTTGTAAAATT+AGG - chr2_1:26832353-26832372 None:intergenic 15.0%
!! ATAAAATTAGGTCATTTAAA+AGG - chr2_1:26832420-26832439 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - chr2_1:26832473-26832492 None:intergenic 15.0%
!!! TATTTTTCTACTAATATACA+AGG + chr2_1:26832473-26832492 Msa0203180:intron 15.0%
!! AAAAAAAACTTAAGTTCAAT+AGG - chr2_1:26833025-26833044 Msa0203190:intron 15.0%
!!! AAAACAATGTTTTTTAGAAT+TGG - chr2_1:26833815-26833834 Msa0203190:intron 15.0%
!!! TATATGAACTTTGTTTTTAT+TGG + chr2_1:26834319-26834338 Msa0203180:intron 15.0%
!!! ATATGAACTTTGTTTTTATT+GGG + chr2_1:26834320-26834339 Msa0203180:intron 15.0%
!!! TAGGAATTTTGTATATTTAT+TGG - chr2_1:26834653-26834672 Msa0203190:intron 15.0%
!! ACACTATATGCAATATATAA+AGG + chr2_1:26829655-26829674 Msa0203180:five_prime_UTR 20.0%
!! ATTAAAAGAATGGTTAGAAA+TGG + chr2_1:26830086-26830105 Msa0203180:CDS 20.0%
!!! AATATATACCATGTTTTTCT+TGG - chr2_1:26830310-26830329 None:intergenic 20.0%
!! TCTACTATTATAGAAAAAAG+AGG - chr2_1:26830919-26830938 None:intergenic 20.0%
!! TGAGATTAAATAGAGAAAAT+AGG + chr2_1:26831034-26831053 Msa0203180:intron 20.0%
!!! TAAAAGGAGATATATCTTTT+TGG + chr2_1:26831128-26831147 Msa0203180:intron 20.0%
!!! AAAAGGAGATATATCTTTTT+GGG + chr2_1:26831129-26831148 Msa0203180:intron 20.0%
!! TATATACAAATTAATTGCGA+CGG + chr2_1:26831310-26831329 Msa0203180:intron 20.0%
!!! AATATTTTAAAACAAGAGCT+CGG - chr2_1:26832111-26832130 None:intergenic 20.0%
!!! TTAATTTTATGAACTCAACA+TGG - chr2_1:26833075-26833094 Msa0203190:intron 20.0%
!! GTTGAGTTCATAAAATTAAA+AGG + chr2_1:26833076-26833095 Msa0203180:intron 20.0%
!!! GTAAAAAAACTAATTTGTTG+TGG + chr2_1:26833255-26833274 Msa0203180:intron 20.0%
!!! TTTTTTTCTTAACCAGATTT+AGG + chr2_1:26834160-26834179 Msa0203180:intron 20.0%
!!! TATGAACTTTGTTTTTATTG+GGG + chr2_1:26834321-26834340 Msa0203180:intron 20.0%
! GAAGAAATTGAAAATACAGA+TGG - chr2_1:26829850-26829869 None:intergenic 25.0%
! AACAAAAAACAACCAATTAC+AGG + chr2_1:26829870-26829889 Msa0203180:CDS 25.0%
! TAACAGAATGTGATTAAACT+TGG + chr2_1:26829984-26830003 Msa0203180:intron 25.0%
! AATGGTTAGAAATGGAAATT+GGG + chr2_1:26830094-26830113 Msa0203180:CDS 25.0%
! CAAACATGAATTATTTACCA+AGG - chr2_1:26830201-26830220 None:intergenic 25.0%
! CTTGGTAAATAATTCATGTT+TGG + chr2_1:26830199-26830218 Msa0203180:intron 25.0%
! AAACATGGTATATATTCATG+TGG + chr2_1:26830314-26830333 Msa0203180:intron 25.0%
! AACATGGTATATATTCATGT+GGG + chr2_1:26830315-26830334 Msa0203180:intron 25.0%
!! AATATTTAGGAGCCAATTTT+AGG + chr2_1:26830361-26830380 Msa0203180:intron 25.0%
!! AACACATAGTTATATTTTGC+AGG + chr2_1:26830413-26830432 Msa0203180:intron 25.0%
!! ACACATAGTTATATTTTGCA+GGG + chr2_1:26830414-26830433 Msa0203180:intron 25.0%
!!! TTGTTTTGTTCTTTTGTTTG+TGG + chr2_1:26830547-26830566 Msa0203180:intron 25.0%
!!! GATTTAGAGAGTACTTTTTT+TGG + chr2_1:26830937-26830956 Msa0203180:intron 25.0%
!!! AGATTTAGAGAGTATTTGAA+AGG + chr2_1:26830965-26830984 Msa0203180:intron 25.0%
! AAATGAGAGTAATCTTATCT+TGG - chr2_1:26831684-26831703 None:intergenic 25.0%
! TAAACAAAACTACTACTTCA+AGG + chr2_1:26831718-26831737 Msa0203180:intron 25.0%
! GATTCTATAGTTTAAATGTG+TGG - chr2_1:26831779-26831798 None:intergenic 25.0%
!!! TAATTTTATTTGAGATGCGT+CGG - chr2_1:26831948-26831967 None:intergenic 25.0%
!!! ATATTTTAAAACAAGAGCTC+GGG - chr2_1:26832110-26832129 None:intergenic 25.0%
! TGAATTGATTATGTAAAACG+TGG + chr2_1:26832211-26832230 Msa0203180:intron 25.0%
!! TTAGGTCATTTAAAATGAGA+CGG - chr2_1:26832335-26832354 None:intergenic 25.0%
! TACTAATATACAAGGTCAAA+TGG + chr2_1:26832481-26832500 Msa0203180:intron 25.0%
! TGTATCAAATAATATGAGAC+AGG + chr2_1:26832630-26832649 Msa0203180:intron 25.0%
! GTATCAAATAATATGAGACA+GGG + chr2_1:26832631-26832650 Msa0203180:intron 25.0%
! ATTAGAAAAATCTTAGACGT+AGG - chr2_1:26832699-26832718 Msa0203190:three_prime_UTR 25.0%
!! ATTTTTCTAATGATTGAACC+AGG + chr2_1:26832708-26832727 Msa0203180:intron 25.0%
! GATAATTTGACATTTGCAAA+TGG + chr2_1:26832893-26832912 Msa0203180:CDS 25.0%
! AGTAATACTAAAATGTGTCT+TGG - chr2_1:26833352-26833371 Msa0203190:intron 25.0%
!!! AGTTCTTAGTTTGTATGAAT+TGG - chr2_1:26833729-26833748 Msa0203190:intron 25.0%
! GAAACAATTGATAGACTTAT+TGG + chr2_1:26833759-26833778 Msa0203180:intron 25.0%
!! TTGGTTACAAATTCAACTTT+TGG + chr2_1:26833778-26833797 Msa0203180:intron 25.0%
!!! ACAAATTCAACTTTTGGAAT+CGG + chr2_1:26833784-26833803 Msa0203180:intron 25.0%
! GAAAAATAAACCTCCATAAA+AGG + chr2_1:26833840-26833859 Msa0203180:intron 25.0%
!!! AATAGAATTTTCAGGATGAA+AGG - chr2_1:26833892-26833911 Msa0203190:intron 25.0%
! ATTTATAAAGTTTGGCATAG+TGG + chr2_1:26834029-26834048 Msa0203180:intron 25.0%
! TTTATAAAGTTTGGCATAGT+GGG + chr2_1:26834030-26834049 Msa0203180:intron 25.0%
! TATACCTAAAATTTGGTCAT+TGG + chr2_1:26834088-26834107 Msa0203180:intron 25.0%
!!! TTCGTTTAATTTTGACAAAG+AGG + chr2_1:26834504-26834523 Msa0203180:intron 25.0%
!!! AGAGGTTGAAACTTTTTTTT+TGG + chr2_1:26834522-26834541 Msa0203180:intron 25.0%
! TCAAAATCTTATCAATTGCT+AGG - chr2_1:26834672-26834691 Msa0203190:intron 25.0%
! GGCAATATTATCAGAAAATT+TGG + chr2_1:26834899-26834918 Msa0203180:CDS 25.0%
!! AGAAAATTTGGTGATAATGA+AGG + chr2_1:26834911-26834930 Msa0203180:CDS 25.0%
!! GAAAATTTGGTGATAATGAA+GGG + chr2_1:26834912-26834931 Msa0203180:CDS 25.0%
GAAATTGAAAATACAGATGG+TGG - chr2_1:26829847-26829866 None:intergenic 30.0%
! CTTAAGTTTTCACCTGTAAT+TGG - chr2_1:26829885-26829904 None:intergenic 30.0%
CAATTACAGGTGAAAACTTA+AGG + chr2_1:26829883-26829902 Msa0203180:intron 30.0%
AATGTGATTAAACTTGGAGA+AGG + chr2_1:26829990-26830009 Msa0203180:CDS 30.0%
AGATGGTTGGATTAAAAGAA+TGG + chr2_1:26830076-26830095 Msa0203180:CDS 30.0%
GAATGGTTAGAAATGGAAAT+TGG + chr2_1:26830093-26830112 Msa0203180:CDS 30.0%
!!! ATAGATAGCTCTTTTTTGCT+TGG + chr2_1:26830131-26830150 Msa0203180:CDS 30.0%
TTGTATCTTGGACCTAAAAT+TGG - chr2_1:26830376-26830395 None:intergenic 30.0%
ATCAATGCAGAATTGTATCT+TGG - chr2_1:26830388-26830407 None:intergenic 30.0%
!! ATAGTATTGGTTTGGGATTT+GGG - chr2_1:26830834-26830853 None:intergenic 30.0%
!!! TTAGAGAGTACTTTTTTTGG+TGG + chr2_1:26830940-26830959 Msa0203180:intron 30.0%
!! TAGAGAGTATTTGAAAGGTT+TGG + chr2_1:26830970-26830989 Msa0203180:intron 30.0%
! ATAATTTAATGGCGGAAAGA+TGG - chr2_1:26831364-26831383 None:intergenic 30.0%
!!! GAAAGAATCTTGCCTTTTTT+TGG + chr2_1:26831629-26831648 Msa0203180:intron 30.0%
TCTATAGTTTAAATGTGTGG+TGG - chr2_1:26831776-26831795 None:intergenic 30.0%
ATCAATAGATAGTATGGTCA+AGG + chr2_1:26831826-26831845 Msa0203180:intron 30.0%
! TAGGTCATTTAAAATGAGAC+GGG - chr2_1:26832334-26832353 None:intergenic 30.0%
TTAGGTCATTTAAAAGGAGA+CGG - chr2_1:26832414-26832433 None:intergenic 30.0%
! TTTTGTTGCAGATAAACGTT+AGG + chr2_1:26832659-26832678 Msa0203180:intron 30.0%
! AGTGTTGCTAGTAACAAATT+TGG + chr2_1:26832776-26832795 Msa0203180:CDS 30.0%
! ACAAATTTGGTTTACACGAT+TGG + chr2_1:26832789-26832808 Msa0203180:CDS 30.0%
! TACTTTAAAAGTTGTCCATG+AGG - chr2_1:26832839-26832858 Msa0203190:three_prime_UTR 30.0%
ATAACTGTCTCATTTAACGT+GGG - chr2_1:26832866-26832885 Msa0203190:three_prime_UTR 30.0%
AATAACTGTCTCATTTAACG+TGG - chr2_1:26832867-26832886 Msa0203190:three_prime_UTR 30.0%
! TTTTGCTCTTTTCTCTCTAT+AGG + chr2_1:26832989-26833008 Msa0203180:intron 30.0%
! TTTGCTCTTTTCTCTCTATA+GGG + chr2_1:26832990-26833009 Msa0203180:intron 30.0%
GACAATGCTCATTAAACTTA+AGG - chr2_1:26833229-26833248 Msa0203190:intron 30.0%
AGGAAGGACATTAGAAAATT+TGG - chr2_1:26833584-26833603 Msa0203190:intron 30.0%
!! CAATGTTCTGAAAACCAAAA+TGG + chr2_1:26833618-26833637 Msa0203180:intron 30.0%
AACCAAAATGGAAATCGAAT+TGG + chr2_1:26833630-26833649 Msa0203180:intron 30.0%
! TACCAATTCGATTTCCATTT+TGG - chr2_1:26833635-26833654 Msa0203190:intron 30.0%
!!! CAAATTCAACTTTTGGAATC+GGG + chr2_1:26833785-26833804 Msa0203180:intron 30.0%
AAATAAACCTCCATAAAAGG+TGG + chr2_1:26833843-26833862 Msa0203180:intron 30.0%
AACAACACAAGAGTTTCTTA+AGG + chr2_1:26833928-26833947 Msa0203180:intron 30.0%
TTATAAAGTTTGGCATAGTG+GGG + chr2_1:26834031-26834050 Msa0203180:intron 30.0%
!! GATGGGTTATACCTAAAATT+TGG + chr2_1:26834081-26834100 Msa0203180:intron 30.0%
! ATCTCCAATGACCAAATTTT+AGG - chr2_1:26834095-26834114 Msa0203190:intron 30.0%
ATATGTCATGTTTCAAGACT+GGG - chr2_1:26834123-26834142 Msa0203190:intron 30.0%
AATATGTCATGTTTCAAGAC+TGG - chr2_1:26834124-26834143 Msa0203190:intron 30.0%
TGGCTAAAAGGAATTAACAA+AGG + chr2_1:26834195-26834214 Msa0203180:CDS 30.0%
!!! GAAACTTTTTTTTTGGTGTC+CGG + chr2_1:26834529-26834548 Msa0203180:intron 30.0%
!!! AAACTTTTTTTTTGGTGTCC+GGG + chr2_1:26834530-26834549 Msa0203180:intron 30.0%
! TATGTTAGTTTCAACCTCTT+CGG - chr2_1:26834612-26834631 Msa0203190:intron 30.0%
TTGATCAGATTAAATAGCCT+TGG - chr2_1:26834836-26834855 Msa0203190:three_prime_UTR 30.0%
AGTCTTAATTCTGACTTTGT+TGG + chr2_1:26834992-26835011 Msa0203180:CDS 30.0%
TGTTCAGATCTTACTGAATA+AGG + chr2_1:26835043-26835062 Msa0203180:three_prime_UTR 30.0%
GTTCAGATCTTACTGAATAA+GGG + chr2_1:26835044-26835063 Msa0203180:three_prime_UTR 30.0%
TTCAGATCTTACTGAATAAG+GGG + chr2_1:26835045-26835064 Msa0203180:three_prime_UTR 30.0%
!! GAAAGGAGGATTGGTTATAT+TGG - chr2_1:26829710-26829729 None:intergenic 35.0%
CAAAATTTACCAGGAGTGAA+AGG - chr2_1:26829727-26829746 None:intergenic 35.0%
AGTGTGACACAAAATTTACC+AGG - chr2_1:26829736-26829755 None:intergenic 35.0%
TCTAGCAAAACTGGATCTAT+GGG - chr2_1:26829820-26829839 None:intergenic 35.0%
TTCTAGCAAAACTGGATCTA+TGG - chr2_1:26829821-26829840 None:intergenic 35.0%
TTGTATACAGCTACAAGAGA+TGG + chr2_1:26830059-26830078 Msa0203180:CDS 35.0%
GAAATGGAAATTGGGAGAAT+TGG + chr2_1:26830102-26830121 Msa0203180:CDS 35.0%
GGAATCACTACATCTAAAGA+TGG + chr2_1:26830152-26830171 Msa0203180:CDS 35.0%
ATCACTACATCTAAAGATGG+TGG + chr2_1:26830155-26830174 Msa0203180:CDS 35.0%
GTTATCCTTTCACAAGTGAA+TGG + chr2_1:26830468-26830487 Msa0203180:CDS 35.0%
!! AGATTTTGAGTGTTACAAGC+AGG + chr2_1:26830594-26830613 Msa0203180:intron 35.0%
!! GATTTTGAGTGTTACAAGCA+GGG + chr2_1:26830595-26830614 Msa0203180:intron 35.0%
TACTACAGTGAAATGTTGTG+AGG - chr2_1:26830692-26830711 None:intergenic 35.0%
TCACAACATTTCACTGTAGT+AGG + chr2_1:26830691-26830710 Msa0203180:intron 35.0%
! ATTCTCTCTGGTGTCAATTT+AGG - chr2_1:26830787-26830806 None:intergenic 35.0%
!! GATAGTATTGGTTTGGGATT+TGG - chr2_1:26830835-26830854 None:intergenic 35.0%
AATCCCAAACCAATACTATC+AGG + chr2_1:26830835-26830854 Msa0203180:intron 35.0%
TTATGTCTGATAACCCACTT+GGG - chr2_1:26830865-26830884 None:intergenic 35.0%
AATTAATTGCGACGGAAAGT+TGG + chr2_1:26831318-26831337 Msa0203180:intron 35.0%
! AACACCATTTAGTTGAGTTG+AGG - chr2_1:26831451-26831470 None:intergenic 35.0%
CTACGATTGTCTATCCATTA+TGG - chr2_1:26831541-26831560 None:intergenic 35.0%
!! CATAATGGATAGACAATCGT+AGG + chr2_1:26831539-26831558 Msa0203180:intron 35.0%
ATCTGACATTATCATCTTGC+TGG - chr2_1:26831586-26831605 None:intergenic 35.0%
CAATTCAGTGGTCCAAAAAA+AGG - chr2_1:26831644-26831663 None:intergenic 35.0%
!!! CTTTTTTTGGACCACTGAAT+TGG + chr2_1:26831642-26831661 Msa0203180:intron 35.0%
TCTTAGTCATTCCAATTCAG+TGG - chr2_1:26831656-26831675 None:intergenic 35.0%
!! ATTAGGCTGATTTGATGGAA+GGG + chr2_1:26831857-26831876 Msa0203180:intron 35.0%
GTTAACGAACAAACACTAGT+AGG - chr2_1:26832248-26832267 None:intergenic 35.0%
! AGGTCATTTAAAATGAGACG+GGG - chr2_1:26832333-26832352 None:intergenic 35.0%
AGGTCAAATGGTAGCATATA+AGG + chr2_1:26832493-26832512 Msa0203180:intron 35.0%
TATTACATCATCTGCAAACC+TGG - chr2_1:26832729-26832748 Msa0203190:three_prime_UTR 35.0%
!! GATGTAATAGAAGCATCAGA+TGG + chr2_1:26832740-26832759 Msa0203180:CDS 35.0%
TGGTTTACACGATTGGTATT+TGG + chr2_1:26832796-26832815 Msa0203180:CDS 35.0%
!! TTGGTATTTGGATTTGCTAG+AGG + chr2_1:26832808-26832827 Msa0203180:CDS 35.0%
CACAACATAATCTTCATCCT+TGG - chr2_1:26832930-26832949 Msa0203190:three_prime_UTR 35.0%
CAAGGATGAAGATTATGTTG+TGG + chr2_1:26832928-26832947 Msa0203180:CDS 35.0%
TCATTCAACAATGTCCTAGT+GGG - chr2_1:26833108-26833127 Msa0203190:intron 35.0%
TTCATTCAACAATGTCCTAG+TGG - chr2_1:26833109-26833128 Msa0203190:intron 35.0%
! TTTGTGGAAGCTTTAACATG+TGG + chr2_1:26833326-26833345 Msa0203180:intron 35.0%
TGTTGTGTTTGAGAGTTAAG+AGG + chr2_1:26833397-26833416 Msa0203180:intron 35.0%
GTTTGAGAGTTAAGAGGAAA+AGG + chr2_1:26833403-26833422 Msa0203180:intron 35.0%
GAAAAGGAACAAGATGACTT+TGG + chr2_1:26833419-26833438 Msa0203180:intron 35.0%
!! CAAAAGCACTCTTACAAACA+AGG - chr2_1:26833507-26833526 Msa0203190:intron 35.0%
TCTAATGTCCTTCCTCAATA+TGG + chr2_1:26833589-26833608 Msa0203180:intron 35.0%
ACATTGCGAAAACCATATTG+AGG - chr2_1:26833604-26833623 Msa0203190:intron 35.0%
TTGGTAAGATCTCTCAATCA+TGG + chr2_1:26833649-26833668 Msa0203180:intron 35.0%
TCTCTCAATCATGGTTCAAT+CGG + chr2_1:26833658-26833677 Msa0203180:intron 35.0%
TGAATCATGGATGCATGAAT+AGG + chr2_1:26833682-26833701 Msa0203180:intron 35.0%
!! AGAATTTTCAGGATGAAAGG+AGG - chr2_1:26833889-26833908 Msa0203190:intron 35.0%
!! TCTTGTGTTGTTTCAGAGTT+AGG - chr2_1:26833920-26833939 Msa0203190:intron 35.0%
AGTGGTAACACAATCTAAGA+TGG + chr2_1:26834063-26834082 Msa0203180:intron 35.0%
! GTGGTAACACAATCTAAGAT+GGG + chr2_1:26834064-26834083 Msa0203180:intron 35.0%
ATTGGGGAAATATTACTGAG+TGG + chr2_1:26834337-26834356 Msa0203180:intron 35.0%
TTGGGGAAATATTACTGAGT+GGG + chr2_1:26834338-26834357 Msa0203180:intron 35.0%
ATTGTCCTTAGCTAAACTCA+TGG + chr2_1:26834583-26834602 Msa0203180:intron 35.0%
TTGTCCTTAGCTAAACTCAT+GGG + chr2_1:26834584-26834603 Msa0203180:intron 35.0%
TGCTGCAGTTAACTTCTAAA+AGG + chr2_1:26834759-26834778 Msa0203180:intron 35.0%
! CAGTTAACTTCTAAAAGGCT+GGG + chr2_1:26834764-26834783 Msa0203180:intron 35.0%
! AGTTAACTTCTAAAAGGCTG+GGG + chr2_1:26834765-26834784 Msa0203180:intron 35.0%
!! AAATGAAGCAAAGAAGTGCT+TGG - chr2_1:26834813-26834832 Msa0203190:three_prime_UTR 35.0%
ACTTCTTTGCTTCATTTCCA+AGG + chr2_1:26834816-26834835 Msa0203180:CDS 35.0%
TAGTGCAACAAAATCAGCTA+TGG + chr2_1:26834856-26834875 Msa0203180:CDS 35.0%
! ATTTGGTGATAATGAAGGGA+AGG + chr2_1:26834916-26834935 Msa0203180:CDS 35.0%
!!! TAGTTTTGTAACTTCAGCTG+TGG + chr2_1:26834943-26834962 Msa0203180:CDS 35.0%
TAAGACTTCCTAGGTAAAGA+TGG - chr2_1:26834979-26834998 Msa0203190:three_prime_UTR 35.0%
AGTCAGAATTAAGACTTCCT+AGG - chr2_1:26834988-26835007 Msa0203190:three_prime_UTR 35.0%
!! GTGGTGTTGGTTTGTATGAT+TGG - chr2_1:26829598-26829617 None:intergenic 40.0%
GATGAATAACCCACTTGTGT+TGG - chr2_1:26829625-26829644 None:intergenic 40.0%
!! AACACACAGCTTCTAAAGCA+TGG + chr2_1:26829681-26829700 Msa0203180:exon 40.0%
AATTTACCAGGAGTGAAAGG+AGG - chr2_1:26829724-26829743 None:intergenic 40.0%
AACTAAAGCTGCTAGAACCA+AGG - chr2_1:26829767-26829786 None:intergenic 40.0%
!! GGTGGTATTTCTAGCAAAAC+TGG - chr2_1:26829829-26829848 None:intergenic 40.0%
TCATCCACACAAACATCTTC+TGG - chr2_1:26830029-26830048 None:intergenic 40.0%
GATGTTTGTGTGGATGAAGA+TGG + chr2_1:26830032-26830051 Msa0203180:CDS 40.0%
ATACAGCTACAAGAGATGGT+TGG + chr2_1:26830063-26830082 Msa0203180:CDS 40.0%
CATTGTCTGTGATACTACCT+TGG + chr2_1:26830181-26830200 Msa0203180:CDS 40.0%
GCAAGAAGCCAAGAAAAACA+TGG + chr2_1:26830299-26830318 Msa0203180:intron 40.0%
!! TATTTTGCAGGGTTTGCTCA+AGG + chr2_1:26830425-26830444 Msa0203180:intron 40.0%
TTGCTCAAGGTTACAGAAGA+AGG + chr2_1:26830438-26830457 Msa0203180:CDS 40.0%
GAGAACCATTCACTTGTGAA+AGG - chr2_1:26830476-26830495 None:intergenic 40.0%
GAAATGTTGTGAGGCAATTG+CGG - chr2_1:26830683-26830702 None:intergenic 40.0%
TTTCACTGTAGTAGGTGCAA+CGG + chr2_1:26830699-26830718 Msa0203180:intron 40.0%
ATGTTACGTCTGATGCAACT+TGG - chr2_1:26830731-26830750 None:intergenic 40.0%
!! TGGCCTGATAGTATTGGTTT+GGG - chr2_1:26830841-26830860 None:intergenic 40.0%
!! TTGGCCTGATAGTATTGGTT+TGG - chr2_1:26830842-26830861 None:intergenic 40.0%
GTTATGTCTGATAACCCACT+TGG - chr2_1:26830866-26830885 None:intergenic 40.0%
AGTTGGATAGACAAGCAGTT+TGG + chr2_1:26831335-26831354 Msa0203180:intron 40.0%
!! CCATTTAGTTGAGTTGAGGT+CGG - chr2_1:26831447-26831466 None:intergenic 40.0%
! TGGTCAAGGTAATGTCGATT+AGG + chr2_1:26831840-26831859 Msa0203180:intron 40.0%
!! TGTCGATTAGGCTGATTTGA+TGG + chr2_1:26831852-26831871 Msa0203180:intron 40.0%
!! GATTAGGCTGATTTGATGGA+AGG + chr2_1:26831856-26831875 Msa0203180:intron 40.0%
!! TTAGGCTGATTTGATGGAAG+GGG + chr2_1:26831858-26831877 Msa0203180:intron 40.0%
! GGTCATTTAAAATGAGACGG+GGG - chr2_1:26832332-26832351 None:intergenic 40.0%
GTCATTTAAAAGGAGACGGA+GGG - chr2_1:26832410-26832429 None:intergenic 40.0%
GCAACTCATCTTTGGTCAAA+TGG - chr2_1:26833053-26833072 Msa0203190:intron 40.0%
TCAACATGGCAACTCATCTT+TGG - chr2_1:26833061-26833080 Msa0203190:intron 40.0%
!! TTAAAAGGTTGATGCCCACT+AGG + chr2_1:26833091-26833110 Msa0203180:intron 40.0%
AGGAACAAGATGACTTTGGA+AGG + chr2_1:26833423-26833442 Msa0203180:intron 40.0%
! GGAACAAGATGACTTTGGAA+GGG + chr2_1:26833424-26833443 Msa0203180:intron 40.0%
GAGAGGAGAGAGAAGAAAAA+AGG + chr2_1:26833451-26833470 Msa0203180:intron 40.0%
AAGCACTCTTACAAACAAGG+TGG - chr2_1:26833504-26833523 Msa0203190:intron 40.0%
TGCGAAAACCATATTGAGGA+AGG - chr2_1:26833600-26833619 Msa0203190:intron 40.0%
TGGTTCAATCGGTTGAATCA+TGG + chr2_1:26833669-26833688 Msa0203180:intron 40.0%
!!! ATTCAACTTTTGGAATCGGG+CGG + chr2_1:26833788-26833807 Msa0203180:intron 40.0%
ATGAAAGGAGGACAAAATGG+AGG - chr2_1:26833877-26833896 Msa0203190:intron 40.0%
AGGATGAAAGGAGGACAAAA+TGG - chr2_1:26833880-26833899 Msa0203190:intron 40.0%
! AGGAGGGGAATAGAATTTTC+AGG - chr2_1:26833900-26833919 Msa0203190:intron 40.0%
!! TGTTGTTTCAGAGTTAGGAG+GGG - chr2_1:26833915-26833934 Msa0203190:intron 40.0%
!! GTGTTGTTTCAGAGTTAGGA+GGG - chr2_1:26833916-26833935 Msa0203190:intron 40.0%
!! TGTGTTGTTTCAGAGTTAGG+AGG - chr2_1:26833917-26833936 Msa0203190:intron 40.0%
! ATAGTGGGGTAACTTGATAG+TGG + chr2_1:26834045-26834064 Msa0203180:intron 40.0%
TAACCAGATTTAGGTGTGTG+AGG + chr2_1:26834169-26834188 Msa0203180:intron 40.0%
ATCTTCATTGAAAACCTCCC+TGG + chr2_1:26834228-26834247 Msa0203180:CDS 40.0%
AATATCAATCTCGCTCCTGA+TGG + chr2_1:26834261-26834280 Msa0203180:CDS 40.0%
CATAATATATGCAAGGTCCG+GGG - chr2_1:26834562-26834581 Msa0203190:intron 40.0%
TGTCCTTAGCTAAACTCATG+GGG + chr2_1:26834585-26834604 Msa0203180:intron 40.0%
! GCAGTTAACTTCTAAAAGGC+TGG + chr2_1:26834763-26834782 Msa0203180:intron 40.0%
! GAAGTGCTTGGATACTTTAG+AGG - chr2_1:26834801-26834820 Msa0203190:three_prime_UTR 40.0%
TGCAACAAAATCAGCTATGG+TGG + chr2_1:26834859-26834878 Msa0203180:CDS 40.0%
TCAGCTATGGTGGTAAATGT+TGG + chr2_1:26834869-26834888 Msa0203180:CDS 40.0%
GTGGTAAATGTTGGAACTGA+AGG + chr2_1:26834878-26834897 Msa0203180:CDS 40.0%
CATCACTATGCAATTGACAG+TGG - chr2_1:26835025-26835044 Msa0203190:three_prime_UTR 40.0%
! ATAACCCACTTGTGTTGGTC+TGG - chr2_1:26829620-26829639 None:intergenic 45.0%
GCAACCAGAAGATGTTTGTG+TGG + chr2_1:26830022-26830041 Msa0203180:CDS 45.0%
TTCACTGTAGTAGGTGCAAC+GGG + chr2_1:26830700-26830719 Msa0203180:intron 45.0%
!! TTGGGTTGGCCTGATAGTAT+TGG - chr2_1:26830847-26830866 None:intergenic 45.0%
CCGACCTCAACTCAACTAAA+TGG + chr2_1:26831444-26831463 Msa0203180:intron 45.0%
ATCGTGAGAGCTCACACAAA+AGG - chr2_1:26831496-26831515 None:intergenic 45.0%
ATTCTTTCACTGCTCGTACG+TGG - chr2_1:26831617-26831636 None:intergenic 45.0%
!! TGTGGTGGACAAGATAGACT+AGG - chr2_1:26831761-26831780 None:intergenic 45.0%
AAAACAAGAGCTCGGGTTCA+AGG - chr2_1:26832103-26832122 None:intergenic 45.0%
GGTCATTTAAAAGGAGACGG+AGG - chr2_1:26832411-26832430 None:intergenic 45.0%
!! AAATGGTGTTGCACTGTCCA+AGG + chr2_1:26832910-26832929 Msa0203180:CDS 45.0%
ATGTTGTGGTGTGCGAAACT+TGG + chr2_1:26832942-26832961 Msa0203180:CDS 45.0%
! ACAAGATGACTTTGGAAGGG+AGG + chr2_1:26833427-26833446 Msa0203180:intron 45.0%
CACTCTTACAAACAAGGTGG+TGG - chr2_1:26833501-26833520 Msa0203190:intron 45.0%
!! GGAGTATCCACCTTTTATGG+AGG - chr2_1:26833853-26833872 Msa0203190:intron 45.0%
!!! GGAGGAGTATCCACCTTTTA+TGG - chr2_1:26833856-26833875 Msa0203190:intron 45.0%
AAAGGAGGACAAAATGGAGG+AGG - chr2_1:26833874-26833893 Msa0203190:intron 45.0%
ATGCCTCACACACCTAAATC+TGG - chr2_1:26834175-26834194 Msa0203190:intron 45.0%
GATTTAGGTGTGTGAGGCAT+TGG + chr2_1:26834175-26834194 Msa0203180:intron 45.0%
!! TGTGTGAGGCATTGGCTAAA+AGG + chr2_1:26834183-26834202 Msa0203180:CDS 45.0%
TTCATTGAAAACCTCCCTGG+TGG + chr2_1:26834231-26834250 Msa0203180:CDS 45.0%
TGATATTGTCAGGTCCACCA+GGG - chr2_1:26834248-26834267 Msa0203190:three_prime_UTR 45.0%
TTGATATTGTCAGGTCCACC+AGG - chr2_1:26834249-26834268 Msa0203190:three_prime_UTR 45.0%
GGAGCGAGATTGATATTGTC+AGG - chr2_1:26834258-26834277 Msa0203190:three_prime_UTR 45.0%
! TGGCTCATTTTGGATCGCTT+TGG + chr2_1:26834281-26834300 Msa0203180:CDS 45.0%
TTCGAGGACCATCTTTACCT+AGG + chr2_1:26834968-26834987 Msa0203180:CDS 45.0%
!!! GATATTTTTTATTTTTTTTA+GGG - chr2_1:26833304-26833323 Msa0203190:intron 5.0%
!!! AGATATTTTTTATTTTTTTT+AGG - chr2_1:26833305-26833324 Msa0203190:intron 5.0%
!! TAAATAAATTTACTAAATTT+AGG + chr2_1:26834384-26834403 Msa0203180:intron 5.0%
! TTGTGTTGGTCTGGTGGTGT+TGG - chr2_1:26829611-26829630 None:intergenic 50.0%
ACCACCAGACCAACACAAGT+GGG + chr2_1:26829613-26829632 Msa0203180:five_prime_UTR 50.0%
ACCAATCCTCCTTTCACTCC+TGG + chr2_1:26829715-26829734 Msa0203180:CDS 50.0%
ACCAGGAGTGAAAGGAGGAT+TGG - chr2_1:26829719-26829738 None:intergenic 50.0%
TGTCACACTCACCTCAACCT+TGG + chr2_1:26829747-26829766 Msa0203180:CDS 50.0%
AGCTGCTAGAACCAAGGTTG+AGG - chr2_1:26829761-26829780 None:intergenic 50.0%
AATTGCGGCTGCATGCAGTT+GGG - chr2_1:26830668-26830687 None:intergenic 50.0%
TCGAGGTCTTCGATTCTCTC+TGG - chr2_1:26830799-26830818 None:intergenic 50.0%
AGAGAGAATCGAAGACCTCG+AGG + chr2_1:26830798-26830817 Msa0203180:intron 50.0%
TACTATCAGGCCAACCCAAG+TGG + chr2_1:26830848-26830867 Msa0203180:intron 50.0%
ACTATCAGGCCAACCCAAGT+GGG + chr2_1:26830849-26830868 Msa0203180:intron 50.0%
GTCTGATAACCCACTTGGGT+TGG - chr2_1:26830861-26830880 None:intergenic 50.0%
GTTGAGGTCGGAAGTTCGAA+TGG - chr2_1:26831435-26831454 None:intergenic 50.0%
GGTGGACAAGATAGACTAGG+TGG - chr2_1:26831758-26831777 None:intergenic 50.0%
TTGAGATGCGTCGGACACAA+AGG - chr2_1:26831939-26831958 None:intergenic 50.0%
TTGCTAGAGGCAAGACCTCA+TGG + chr2_1:26832821-26832840 Msa0203180:CDS 50.0%
! TCGCTCCTGATGGCTCATTT+TGG + chr2_1:26834271-26834290 Msa0203180:CDS 50.0%
GCGATCCAAAATGAGCCATC+AGG - chr2_1:26834279-26834298 Msa0203190:three_prime_UTR 50.0%
GGTCCCCATGAGTTTAGCTA+AGG - chr2_1:26834591-26834610 Msa0203190:intron 50.0%
TAAACTCATGGGGACCGAAG+AGG + chr2_1:26834595-26834614 Msa0203180:intron 50.0%
AACTTCAGCTGTGGAGTTCG+AGG + chr2_1:26834952-26834971 Msa0203180:CDS 50.0%
CACCACCAGACCAACACAAG+TGG + chr2_1:26829612-26829631 Msa0203180:five_prime_UTR 55.0%
! ACCCACTTGTGTTGGTCTGG+TGG - chr2_1:26829617-26829636 None:intergenic 55.0%
CTTGCGGACGCGTCATATGA+TGG - chr2_1:26830635-26830654 None:intergenic 55.0%
ATTGCGGCTGCATGCAGTTG+GGG - chr2_1:26830667-26830686 None:intergenic 55.0%
CAATTGCGGCTGCATGCAGT+TGG - chr2_1:26830669-26830688 None:intergenic 55.0%
! GACTTTGGAAGGGAGGAGAG+AGG + chr2_1:26833434-26833453 Msa0203180:intron 55.0%
TATTGTCAGGTCCACCAGGG+AGG - chr2_1:26834245-26834264 Msa0203190:three_prime_UTR 55.0%
! GTTGGGGACACTGCTGCTTG+CGG - chr2_1:26830651-26830670 None:intergenic 60.0%
! TTGGGAGTGTGCTCTCCTCG+AGG - chr2_1:26830816-26830835 None:intergenic 60.0%
TGGTGTCCGGGTTCGAACCC+CGG + chr2_1:26834542-26834561 Msa0203180:intron 65.0%
CAAGGTCCGGGGTTCGAACC+CGG - chr2_1:26834551-26834570 Msa0203190:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 26829582 26835189 26829582 ID=Msa0203180;Name=Msa0203180
chr2_1 mRNA 26829582 26835189 26829582 ID=Msa0203180-mRNA-1;Parent=Msa0203180;Name=Msa0203180-mRNA-1;_AED=0.29;_eAED=0.29;_QI=118|1|1|1|1|1|6|150|371
chr2_1 exon 26829582 26829891 26829582 ID=Msa0203180-mRNA-1:exon:9951;Parent=Msa0203180-mRNA-1
chr2_1 exon 26829990 26830202 26829990 ID=Msa0203180-mRNA-1:exon:9952;Parent=Msa0203180-mRNA-1
chr2_1 exon 26830435 26830502 26830435 ID=Msa0203180-mRNA-1:exon:9953;Parent=Msa0203180-mRNA-1
chr2_1 exon 26832730 26832966 26832730 ID=Msa0203180-mRNA-1:exon:9954;Parent=Msa0203180-mRNA-1
chr2_1 exon 26834176 26834308 26834176 ID=Msa0203180-mRNA-1:exon:9955;Parent=Msa0203180-mRNA-1
chr2_1 exon 26834767 26835189 26834767 ID=Msa0203180-mRNA-1:exon:9956;Parent=Msa0203180-mRNA-1
chr2_1 five_prime_UTR 26829582 26829699 26829582 ID=Msa0203180-mRNA-1:five_prime_utr;Parent=Msa0203180-mRNA-1
chr2_1 CDS 26829700 26829891 26829700 ID=Msa0203180-mRNA-1:cds;Parent=Msa0203180-mRNA-1
chr2_1 CDS 26829990 26830202 26829990 ID=Msa0203180-mRNA-1:cds;Parent=Msa0203180-mRNA-1
chr2_1 CDS 26830435 26830502 26830435 ID=Msa0203180-mRNA-1:cds;Parent=Msa0203180-mRNA-1
chr2_1 CDS 26832730 26832966 26832730 ID=Msa0203180-mRNA-1:cds;Parent=Msa0203180-mRNA-1
chr2_1 CDS 26834176 26834308 26834176 ID=Msa0203180-mRNA-1:cds;Parent=Msa0203180-mRNA-1
chr2_1 CDS 26834767 26835039 26834767 ID=Msa0203180-mRNA-1:cds;Parent=Msa0203180-mRNA-1
chr2_1 three_prime_UTR 26835040 26835189 26835040 ID=Msa0203180-mRNA-1:three_prime_utr;Parent=Msa0203180-mRNA-1
Gene Sequence

>Msa0203180

ATGGCTTCCAATATAACCAATCCTCCTTTCACTCCTGGTAAATTTTGTGTCACACTCACCTCAACCTTGGTTCTAGCAGCTTTAGTTTCTCTTACAGTTCAAGTCTTCTACTTCTCACCCATAGATCCAGTTTTGCTAGAAATACCACCATCTGTATTTTCAATTTCTTCAACAAAAAACAACCAATTACAGAATGTGATTAAACTTGGAGAAGGATTTCTGAAGCAACCAGAAGATGTTTGTGTGGATGAAGATGGTGTCTTGTATACAGCTACAAGAGATGGTTGGATTAAAAGAATGGTTAGAAATGGAAATTGGGAGAATTGGAAGCATATAGATAGCTCTTTTTTGCTTGGAATCACTACATCTAAAGATGGTGGTCTCATTGTCTGTGATACTACCTTGGGTTTGCTCAAGGTTACAGAAGAAGGTTTCAGTGTTATCCTTTCACAAGTGAATGGTTCTCAATTAATGTTTGCAGATGATGTAATAGAAGCATCAGATGGAAATATATACTTCAGTGTTGCTAGTAACAAATTTGGTTTACACGATTGGTATTTGGATTTGCTAGAGGCAAGACCTCATGGACAACTTTTAAAGTATAATCCCACGTTAAATGAGACAGTTATTGTCATTGATAATTTGACATTTGCAAATGGTGTTGCACTGTCCAAGGATGAAGATTATGTTGTGGTGTGCGAAACTTGGAAATTTAGGTGTGTGAGGCATTGGCTAAAAGGAATTAACAAAGGCAAAACAGATATCTTCATTGAAAACCTCCCTGGTGGACCTGACAATATCAATCTCGCTCCTGATGGCTCATTTTGGATCGCTTTGGTTCAATTAACTTCTAAAAGGCTGGGGTTTGTGCACACCTCTAAAGTATCCAAGCACTTCTTTGCTTCATTTCCAAGGCTATTTAATCTGATCAATAGTGCAACAAAATCAGCTATGGTGGTAAATGTTGGAACTGAAGGCAATATTATCAGAAAATTTGGTGATAATGAAGGGAAGGTGTTTAGTTTTGTAACTTCAGCTGTGGAGTTCGAGGACCATCTTTACCTAGGAAGTCTTAATTCTGACTTTGTTGGAAAATTGCCACTGTCAATTGCATAG

Protein sequence

>Msa0203180

MASNITNPPFTPGKFCVTLTSTLVLAALVSLTVQVFYFSPIDPVLLEIPPSVFSISSTKNNQLQNVIKLGEGFLKQPEDVCVDEDGVLYTATRDGWIKRMVRNGNWENWKHIDSSFLLGITTSKDGGLIVCDTTLGLLKVTEEGFSVILSQVNGSQLMFADDVIEASDGNIYFSVASNKFGLHDWYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGINKGKTDIFIENLPGGPDNINLAPDGSFWIALVQLTSKRLGFVHTSKVSKHFFASFPRLFNLINSATKSAMVVNVGTEGNIIRKFGDNEGKVFSFVTSAVEFEDHLYLGSLNSDFVGKLPLSIA*