Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282150 | KEH42019.1 | 71.905 | 210 | 56 | 2 | 1 | 207 | 54 | 263 | 2.02e-98 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282150 | sp|Q8GYH5|BAD1_ARATH | 40.097 | 207 | 110 | 5 | 2 | 197 | 48 | 251 | 3.19e-43 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282150 | A0A072VJ13 | 71.905 | 210 | 56 | 2 | 1 | 207 | 54 | 263 | 9.64e-99 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059880 | Msa1282150 | 0.807491 | 4.924814e-50 | -8.615850e-47 |
| Msa0605470 | Msa1282150 | 0.807229 | 5.598302e-50 | -8.615850e-47 |
| Msa0643840 | Msa1282150 | 0.807364 | 5.240268e-50 | -8.615850e-47 |
| Msa0678620 | Msa1282150 | 0.823621 | 1.255146e-53 | -8.615850e-47 |
| Msa0727480 | Msa1282150 | 0.823123 | 1.640910e-53 | -8.615850e-47 |
| Msa0735280 | Msa1282150 | 0.824379 | 8.335132e-54 | -8.615850e-47 |
| Msa0768670 | Msa1282150 | 0.820840 | 5.546350e-53 | -8.615850e-47 |
| Msa0768720 | Msa1282150 | 0.824780 | 6.705654e-54 | -8.615850e-47 |
| Msa0777250 | Msa1282150 | 0.822936 | 1.814384e-53 | -8.615850e-47 |
| Msa0814160 | Msa1282150 | 0.812104 | 5.014009e-51 | -8.615850e-47 |
| Msa0150910 | Msa1282150 | 0.802278 | 6.052169e-49 | -8.615850e-47 |
| Msa0163340 | Msa1282150 | 0.802196 | 6.292508e-49 | -8.615850e-47 |
| Msa1269050 | Msa1282150 | 0.803465 | 3.440744e-49 | -8.615850e-47 |
| Msa1282150 | Msa1323030 | 0.808133 | 3.597413e-50 | -8.615850e-47 |
| Msa1282150 | Msa1323120 | 0.807651 | 4.554176e-50 | -8.615850e-47 |
| Msa1282150 | Msa1357860 | 0.805799 | 1.120937e-49 | -8.615850e-47 |
| Msa0444250 | Msa1282150 | 0.818039 | 2.413220e-52 | -8.615850e-47 |
| Msa0985700 | Msa1282150 | 0.803219 | 3.869183e-49 | -8.615850e-47 |
| Msa0985710 | Msa1282150 | 0.803042 | 4.210910e-49 | -8.615850e-47 |
| Msa1021620 | Msa1282150 | 0.836786 | 7.631451e-57 | -8.615850e-47 |
| Msa1109880 | Msa1282150 | 0.803375 | 3.592056e-49 | -8.615850e-47 |
| Msa1109890 | Msa1282150 | 0.808187 | 3.503370e-50 | -8.615850e-47 |
| Msa1120680 | Msa1282150 | 0.813739 | 2.197420e-51 | -8.615850e-47 |
| Msa1149020 | Msa1282150 | 0.808043 | 3.760199e-50 | -8.615850e-47 |
| Msa0549930 | Msa1282150 | 0.803070 | 4.154646e-49 | -8.615850e-47 |
| Msa0579530 | Msa1282150 | 0.843665 | 1.218639e-58 | -8.615850e-47 |
| Msa0883640 | Msa1282150 | 0.808198 | 3.485085e-50 | -8.615850e-47 |
| Msa0951150 | Msa1282150 | 0.800186 | 1.621696e-48 | -8.615850e-47 |
| Msa0960090 | Msa1282150 | 0.810568 | 1.080265e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282150 | MtrunA17_Chr1g0178581 | 71.564 | 211 | 57 | 2 | 1 | 208 | 54 | 264 | 2.63e-102 | 302 |
| Msa1282150 | MtrunA17_Chr3g0083331 | 67.265 | 223 | 59 | 2 | 1 | 209 | 52 | 274 | 7.69e-101 | 299 |
| Msa1282150 | MtrunA17_Chr8g0353311 | 72.381 | 210 | 55 | 2 | 1 | 207 | 56 | 265 | 4.01e-98 | 291 |
| Msa1282150 | MtrunA17_Chr3g0093531 | 66.355 | 214 | 66 | 2 | 1 | 208 | 1 | 214 | 1.44e-95 | 283 |
| Msa1282150 | MtrunA17_Chr8g0354071 | 67.290 | 214 | 64 | 3 | 1 | 208 | 1 | 214 | 1.57e-95 | 283 |
| Msa1282150 | MtrunA17_Chr8g0367671 | 66.667 | 213 | 65 | 2 | 1 | 207 | 54 | 266 | 1.18e-94 | 283 |
| Msa1282150 | MtrunA17_Chr7g0221531 | 67.619 | 210 | 65 | 2 | 1 | 207 | 51 | 260 | 2.67e-92 | 276 |
| Msa1282150 | MtrunA17_Chr8g0369921 | 67.773 | 211 | 65 | 2 | 1 | 208 | 52 | 262 | 2.02e-91 | 275 |
| Msa1282150 | MtrunA17_Chr8g0368621 | 66.507 | 209 | 65 | 3 | 2 | 206 | 50 | 257 | 1.02e-90 | 269 |
| Msa1282150 | MtrunA17_Chr8g0364031 | 67.308 | 208 | 64 | 2 | 1 | 204 | 52 | 259 | 2.17e-89 | 269 |
| Msa1282150 | MtrunA17_Chr7g0233331 | 66.986 | 209 | 66 | 2 | 2 | 207 | 52 | 260 | 2.58e-89 | 268 |
| Msa1282150 | MtrunA17_Chr8g0370361 | 64.151 | 212 | 73 | 2 | 1 | 209 | 53 | 264 | 5.82e-88 | 266 |
| Msa1282150 | MtrunA17_Chr8g0361991 | 54.751 | 221 | 87 | 3 | 2 | 209 | 54 | 274 | 9.61e-73 | 227 |
| Msa1282150 | MtrunA17_Chr3g0136651 | 53.555 | 211 | 88 | 3 | 2 | 202 | 48 | 258 | 8.03e-67 | 211 |
| Msa1282150 | MtrunA17_Chr8g0370381 | 55.357 | 168 | 51 | 3 | 1 | 152 | 1 | 160 | 7.71e-56 | 175 |
| Msa1282150 | MtrunA17_Chr8g0366431 | 58.182 | 165 | 65 | 2 | 46 | 206 | 19 | 183 | 2.20e-54 | 177 |
| Msa1282150 | MtrunA17_Chr2g0331201 | 25.778 | 225 | 137 | 5 | 2 | 206 | 149 | 363 | 1.48e-13 | 68.9 |
| Msa1282150 | MtrunA17_Chr2g0331191 | 25.221 | 226 | 138 | 5 | 2 | 206 | 149 | 364 | 9.29e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282150 | AT4G10720.2 | 39.450 | 218 | 119 | 4 | 2 | 207 | 48 | 264 | 6.03e-45 | 154 |
| Msa1282150 | AT4G10720.1 | 39.269 | 219 | 120 | 4 | 2 | 208 | 48 | 265 | 1.78e-44 | 154 |
| Msa1282150 | AT5G54610.1 | 40.097 | 207 | 110 | 5 | 2 | 197 | 48 | 251 | 3.24e-44 | 152 |
| Msa1282150 | AT5G54620.1 | 41.204 | 216 | 117 | 3 | 2 | 207 | 48 | 263 | 3.96e-43 | 150 |
| Msa1282150 | AT5G15500.2 | 39.604 | 202 | 109 | 5 | 2 | 191 | 49 | 249 | 9.96e-38 | 136 |
| Msa1282150 | AT1G14480.1 | 39.560 | 182 | 106 | 2 | 1 | 178 | 47 | 228 | 3.78e-36 | 132 |
| Msa1282150 | AT1G14500.1 | 38.806 | 201 | 115 | 3 | 3 | 195 | 49 | 249 | 2.85e-35 | 129 |
| Msa1282150 | AT1G14480.2 | 46.429 | 112 | 58 | 1 | 1 | 110 | 47 | 158 | 2.46e-25 | 102 |
| Msa1282150 | AT5G51160.1 | 31.220 | 205 | 116 | 6 | 12 | 199 | 34 | 230 | 7.12e-21 | 90.1 |
| Msa1282150 | AT5G15500.1 | 35.417 | 144 | 80 | 5 | 60 | 191 | 1 | 143 | 4.78e-17 | 78.6 |
| Msa1282150 | AT1G10340.2 | 27.703 | 148 | 97 | 2 | 29 | 174 | 171 | 310 | 4.90e-11 | 62.0 |
| Msa1282150 | AT1G10340.1 | 27.703 | 148 | 97 | 2 | 29 | 174 | 175 | 314 | 5.05e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAACTTGTTAGAGTTAA+AGG | 0.170968 | 8_3:+22295940 | Msa1282150:CDS |
| TCATAATTTCAGTGGCAAAT+TGG | 0.275256 | 8_3:-22295807 | None:intergenic |
| CATATGCTTGGAAGCTAAAC+TGG | 0.300020 | 8_3:+22295842 | Msa1282150:CDS |
| TCCACCTTGCTTTGCAGAAC+GGG | 0.338963 | 8_3:+22295881 | Msa1282150:CDS |
| ACTCCTCTTCATTTCCGAAT+TGG | 0.348633 | 8_3:+22295976 | Msa1282150:CDS |
| TTACCTGTGGATTACAGCTT+AGG | 0.352866 | 8_3:-22296230 | None:intergenic |
| GAGGCCCTTCAAGTACTTGT+TGG | 0.387506 | 8_3:+22296108 | Msa1282150:CDS |
| GCAGAACGGGCAAAAGAGTA+TGG | 0.403806 | 8_3:+22295894 | Msa1282150:CDS |
| CCCTTCAAGTACTTGTTGGC+TGG | 0.409768 | 8_3:+22296112 | Msa1282150:CDS |
| GTCAGGTATTGAATGGATTC+CGG | 0.418131 | 8_3:-22296036 | None:intergenic |
| TTCTGCAAAGCAAGGTGGAT+GGG | 0.420515 | 8_3:-22295877 | None:intergenic |
| TCCAGAGCTGGAGCAAAACT+TGG | 0.449399 | 8_3:+22297229 | Msa1282150:CDS |
| AAAGATCAACCTCACCAATT+CGG | 0.452218 | 8_3:-22295990 | None:intergenic |
| TGTTAAGAATGAACAGTTTG+AGG | 0.453646 | 8_3:+22296089 | Msa1282150:CDS |
| AAATTTGAAGGCAAAGAACT+TGG | 0.453646 | 8_3:+22297153 | Msa1282150:CDS |
| CAGTCTCGCACCTCACAGTC+AGG | 0.477088 | 8_3:-22296053 | None:intergenic |
| CTTGTTTGTTGGTAATGACT+AGG | 0.482124 | 8_3:+22297128 | Msa1282150:CDS |
| TGTTGAAACCTTCATATGCT+TGG | 0.485488 | 8_3:+22295830 | Msa1282150:CDS |
| TAACTTTCTCTATGCTTGTC+CGG | 0.488983 | 8_3:+22296017 | Msa1282150:CDS |
| TACCTGTGGATTACAGCTTA+GGG | 0.490926 | 8_3:-22296229 | None:intergenic |
| TTTAGCTTCCAAGCATATGA+AGG | 0.493105 | 8_3:-22295838 | None:intergenic |
| CCTCACAGTCAGGTATTGAA+TGG | 0.499244 | 8_3:-22296043 | None:intergenic |
| GCCAGCCAACAAGTACTTGA+AGG | 0.506296 | 8_3:-22296113 | None:intergenic |
| GGTGGAACAGGCTTGTTTGT+TGG | 0.508243 | 8_3:+22297117 | Msa1282150:intron |
| GTTAGAGTTAAAGGAAGAGA+AGG | 0.510047 | 8_3:+22295949 | Msa1282150:CDS |
| CTAAATCAAGTTGATGAGGC+AGG | 0.521043 | 8_3:+22296183 | Msa1282150:CDS |
| GTTCTGCAAAGCAAGGTGGA+TGG | 0.528821 | 8_3:-22295878 | None:intergenic |
| AAGAAAATATTATCCAGAGC+TGG | 0.537892 | 8_3:+22297217 | Msa1282150:CDS |
| ATCCACCTTGCTTTGCAGAA+CGG | 0.538687 | 8_3:+22295880 | Msa1282150:CDS |
| TTTGCCCGTTCTGCAAAGCA+AGG | 0.551648 | 8_3:-22295885 | None:intergenic |
| TTTCAACATCATAATTTCAG+TGG | 0.552567 | 8_3:-22295815 | None:intergenic |
| TCTTAGTTTATGTGCGTGTG+TGG | 0.558188 | 8_3:-22297272 | None:intergenic |
| TCTGCAAAGCAAGGTGGATG+GGG | 0.566411 | 8_3:-22295876 | None:intergenic |
| TCTTCATTTCCGAATTGGTG+AGG | 0.568637 | 8_3:+22295981 | Msa1282150:CDS |
| CTTAGTTTATGTGCGTGTGT+GGG | 0.574156 | 8_3:-22297271 | None:intergenic |
| AGCCCTAAGCTGTAATCCAC+AGG | 0.588957 | 8_3:+22296227 | Msa1282150:CDS |
| AATTCTAAATCAAGTTGATG+AGG | 0.591969 | 8_3:+22296179 | Msa1282150:CDS |
| GCTTGGAAGCTAAACTGGCA+AGG | 0.616049 | 8_3:+22295847 | Msa1282150:CDS |
| TCACCAATTCGGAAATGAAG+AGG | 0.617675 | 8_3:-22295979 | None:intergenic |
| CCAGCCAACAAGTACTTGAA+GGG | 0.622327 | 8_3:-22296112 | None:intergenic |
| CTCGAAGCAAATTACAAGAG+AGG | 0.641881 | 8_3:+22296135 | Msa1282150:CDS |
| GCCCGTTCTGCAAAGCAAGG+TGG | 0.649880 | 8_3:-22295882 | None:intergenic |
| CCATTCAATACCTGACTGTG+AGG | 0.663432 | 8_3:+22296043 | Msa1282150:CDS |
| AGACATTGCATCAACTGCAG+AGG | 0.663602 | 8_3:+22297192 | Msa1282150:CDS |
| AGTTGATGCAATGTCTAATG+CGG | 0.716809 | 8_3:-22297185 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATTTTTATTTATTATT+TGG | + | chr8_3:22296887-22296906 | Msa1282150:intron | 0.0% |
| !!! | AATTATTTTTATTTATTATT+TGG | + | chr8_3:22296887-22296906 | Msa1282150:intron | 0.0% |
| !! | ATAACAAAAAAATAAAATCT+AGG | + | chr8_3:22296377-22296396 | Msa1282150:intron | 10.0% |
| !! | ATAACAAAAAAATAAAATCT+AGG | + | chr8_3:22296377-22296396 | Msa1282150:intron | 10.0% |
| !!! | CATATTTCTTGTTATATTTT+TGG | + | chr8_3:22296557-22296576 | Msa1282150:intron | 15.0% |
| !! | TGATATGAAAAATATAAAGT+AGG | + | chr8_3:22296612-22296631 | Msa1282150:intron | 15.0% |
| !!! | ATCAATGTTTTTTTTTGTTT+TGG | + | chr8_3:22296780-22296799 | Msa1282150:intron | 15.0% |
| !!! | TCAATGTTTTTTTTTGTTTT+GGG | + | chr8_3:22296781-22296800 | Msa1282150:intron | 15.0% |
| !!! | CATATTTCTTGTTATATTTT+TGG | + | chr8_3:22296557-22296576 | Msa1282150:intron | 15.0% |
| !! | TGATATGAAAAATATAAAGT+AGG | + | chr8_3:22296612-22296631 | Msa1282150:intron | 15.0% |
| !!! | ATCAATGTTTTTTTTTGTTT+TGG | + | chr8_3:22296780-22296799 | Msa1282150:intron | 15.0% |
| !!! | TCAATGTTTTTTTTTGTTTT+GGG | + | chr8_3:22296781-22296800 | Msa1282150:intron | 15.0% |
| !!! | TATGTTGTTTTTTAATTGTG+AGG | - | chr8_3:22296502-22296521 | None:intergenic | 20.0% |
| !!! | ATTTCTTGTTATATTTTTGG+TGG | + | chr8_3:22296560-22296579 | Msa1282150:intron | 20.0% |
| !!! | GTGTAATTTTTTTTTGTCAT+TGG | + | chr8_3:22296582-22296601 | Msa1282150:intron | 20.0% |
| !! | AAAATATAAAGTAGGTAGTT+TGG | + | chr8_3:22296620-22296639 | Msa1282150:intron | 20.0% |
| !!! | ATTGTTCATTGATAATTACT+TGG | + | chr8_3:22297096-22297115 | Msa1282150:intron | 20.0% |
| !!! | TATGTTGTTTTTTAATTGTG+AGG | - | chr8_3:22296502-22296521 | None:intergenic | 20.0% |
| !!! | ATTTCTTGTTATATTTTTGG+TGG | + | chr8_3:22296560-22296579 | Msa1282150:intron | 20.0% |
| !!! | GTGTAATTTTTTTTTGTCAT+TGG | + | chr8_3:22296582-22296601 | Msa1282150:intron | 20.0% |
| !! | AAAATATAAAGTAGGTAGTT+TGG | + | chr8_3:22296620-22296639 | Msa1282150:intron | 20.0% |
| !!! | ATTGTTCATTGATAATTACT+TGG | + | chr8_3:22297096-22297115 | Msa1282150:intron | 20.0% |
| ! | TTTCAACATCATAATTTCAG+TGG | - | chr8_3:22295818-22295837 | None:intergenic | 25.0% |
| !!! | AAAGAACTTGTTAGAGTTAA+AGG | + | chr8_3:22295940-22295959 | Msa1282150:CDS | 25.0% |
| !!! | AATTCTAAATCAAGTTGATG+AGG | + | chr8_3:22296179-22296198 | Msa1282150:CDS | 25.0% |
| ! | CAATATATAAACATGACATG+TGG | - | chr8_3:22296279-22296298 | None:intergenic | 25.0% |
| ! | GACAACAAGATAAATATACA+AGG | - | chr8_3:22296480-22296499 | None:intergenic | 25.0% |
| !! | TTTTAGTCGCAAATTTCATA+TGG | + | chr8_3:22296668-22296687 | Msa1282150:intron | 25.0% |
| ! | GAAAAACATTCCAAAATAAG+TGG | - | chr8_3:22297007-22297026 | None:intergenic | 25.0% |
| ! | AATGACTAGGAAAAATTTGA+AGG | + | chr8_3:22297141-22297160 | Msa1282150:CDS | 25.0% |
| ! | TTTCAACATCATAATTTCAG+TGG | - | chr8_3:22295818-22295837 | None:intergenic | 25.0% |
| !!! | AAAGAACTTGTTAGAGTTAA+AGG | + | chr8_3:22295940-22295959 | Msa1282150:CDS | 25.0% |
| !!! | AATTCTAAATCAAGTTGATG+AGG | + | chr8_3:22296179-22296198 | Msa1282150:CDS | 25.0% |
| ! | CAATATATAAACATGACATG+TGG | - | chr8_3:22296279-22296298 | None:intergenic | 25.0% |
| ! | GACAACAAGATAAATATACA+AGG | - | chr8_3:22296480-22296499 | None:intergenic | 25.0% |
| !! | TTTTAGTCGCAAATTTCATA+TGG | + | chr8_3:22296668-22296687 | Msa1282150:intron | 25.0% |
| ! | GAAAAACATTCCAAAATAAG+TGG | - | chr8_3:22297007-22297026 | None:intergenic | 25.0% |
| ! | AATGACTAGGAAAAATTTGA+AGG | + | chr8_3:22297141-22297160 | Msa1282150:CDS | 25.0% |
| TCATAATTTCAGTGGCAAAT+TGG | - | chr8_3:22295810-22295829 | None:intergenic | 30.0% | |
| TGTTAAGAATGAACAGTTTG+AGG | + | chr8_3:22296089-22296108 | Msa1282150:CDS | 30.0% | |
| !! | GCTAATTCTTTGCTTTAAAG+TGG | - | chr8_3:22296701-22296720 | None:intergenic | 30.0% |
| !! | ATATAAAGCGCCACTTATTT+TGG | + | chr8_3:22296994-22297013 | Msa1282150:intron | 30.0% |
| ! | GTTCATTGATAATTACTTGG+TGG | + | chr8_3:22297099-22297118 | Msa1282150:intron | 30.0% |
| AAATTTGAAGGCAAAGAACT+TGG | + | chr8_3:22297153-22297172 | Msa1282150:CDS | 30.0% | |
| AAGAAAATATTATCCAGAGC+TGG | + | chr8_3:22297217-22297236 | Msa1282150:CDS | 30.0% | |
| TCATAATTTCAGTGGCAAAT+TGG | - | chr8_3:22295810-22295829 | None:intergenic | 30.0% | |
| TGTTAAGAATGAACAGTTTG+AGG | + | chr8_3:22296089-22296108 | Msa1282150:CDS | 30.0% | |
| !! | GCTAATTCTTTGCTTTAAAG+TGG | - | chr8_3:22296701-22296720 | None:intergenic | 30.0% |
| !! | ATATAAAGCGCCACTTATTT+TGG | + | chr8_3:22296994-22297013 | Msa1282150:intron | 30.0% |
| ! | GTTCATTGATAATTACTTGG+TGG | + | chr8_3:22297099-22297118 | Msa1282150:intron | 30.0% |
| AAATTTGAAGGCAAAGAACT+TGG | + | chr8_3:22297153-22297172 | Msa1282150:CDS | 30.0% | |
| AAGAAAATATTATCCAGAGC+TGG | + | chr8_3:22297217-22297236 | Msa1282150:CDS | 30.0% | |
| TGTTGAAACCTTCATATGCT+TGG | + | chr8_3:22295830-22295849 | Msa1282150:CDS | 35.0% | |
| ! | TTTAGCTTCCAAGCATATGA+AGG | - | chr8_3:22295841-22295860 | None:intergenic | 35.0% |
| GTTAGAGTTAAAGGAAGAGA+AGG | + | chr8_3:22295949-22295968 | Msa1282150:CDS | 35.0% | |
| AAAGATCAACCTCACCAATT+CGG | - | chr8_3:22295993-22296012 | None:intergenic | 35.0% | |
| TAACTTTCTCTATGCTTGTC+CGG | + | chr8_3:22296017-22296036 | Msa1282150:CDS | 35.0% | |
| ATGTGGTTTCATATCATTGC+AGG | - | chr8_3:22296262-22296281 | None:intergenic | 35.0% | |
| TAGAGCAATACTATAGTTCG+TGG | - | chr8_3:22296339-22296358 | None:intergenic | 35.0% | |
| TTACAAATGTGACACTGAGA+TGG | + | chr8_3:22297029-22297048 | Msa1282150:intron | 35.0% | |
| ! | TGATAATTACTTGGTGGAAC+AGG | + | chr8_3:22297105-22297124 | Msa1282150:intron | 35.0% |
| !! | CTTGTTTGTTGGTAATGACT+AGG | + | chr8_3:22297128-22297147 | Msa1282150:CDS | 35.0% |
| ! | AGTTGATGCAATGTCTAATG+CGG | - | chr8_3:22297188-22297207 | None:intergenic | 35.0% |
| TGTTGAAACCTTCATATGCT+TGG | + | chr8_3:22295830-22295849 | Msa1282150:CDS | 35.0% | |
| ! | TTTAGCTTCCAAGCATATGA+AGG | - | chr8_3:22295841-22295860 | None:intergenic | 35.0% |
| GTTAGAGTTAAAGGAAGAGA+AGG | + | chr8_3:22295949-22295968 | Msa1282150:CDS | 35.0% | |
| AAAGATCAACCTCACCAATT+CGG | - | chr8_3:22295993-22296012 | None:intergenic | 35.0% | |
| TAACTTTCTCTATGCTTGTC+CGG | + | chr8_3:22296017-22296036 | Msa1282150:CDS | 35.0% | |
| ATGTGGTTTCATATCATTGC+AGG | - | chr8_3:22296262-22296281 | None:intergenic | 35.0% | |
| TAGAGCAATACTATAGTTCG+TGG | - | chr8_3:22296339-22296358 | None:intergenic | 35.0% | |
| TTACAAATGTGACACTGAGA+TGG | + | chr8_3:22297029-22297048 | Msa1282150:intron | 35.0% | |
| ! | TGATAATTACTTGGTGGAAC+AGG | + | chr8_3:22297105-22297124 | Msa1282150:intron | 35.0% |
| !! | CTTGTTTGTTGGTAATGACT+AGG | + | chr8_3:22297128-22297147 | Msa1282150:CDS | 35.0% |
| ! | AGTTGATGCAATGTCTAATG+CGG | - | chr8_3:22297188-22297207 | None:intergenic | 35.0% |
| CATATGCTTGGAAGCTAAAC+TGG | + | chr8_3:22295842-22295861 | Msa1282150:CDS | 40.0% | |
| ! | AGTATGGTGTCTCGTTTTGT+GGG | + | chr8_3:22295910-22295929 | Msa1282150:CDS | 40.0% |
| ACTCCTCTTCATTTCCGAAT+TGG | + | chr8_3:22295976-22295995 | Msa1282150:CDS | 40.0% | |
| TCACCAATTCGGAAATGAAG+AGG | - | chr8_3:22295982-22296001 | None:intergenic | 40.0% | |
| TCTTCATTTCCGAATTGGTG+AGG | + | chr8_3:22295981-22296000 | Msa1282150:CDS | 40.0% | |
| !! | GTCAGGTATTGAATGGATTC+CGG | - | chr8_3:22296039-22296058 | None:intergenic | 40.0% |
| CTCGAAGCAAATTACAAGAG+AGG | + | chr8_3:22296135-22296154 | Msa1282150:CDS | 40.0% | |
| !! | CTAAATCAAGTTGATGAGGC+AGG | + | chr8_3:22296183-22296202 | Msa1282150:CDS | 40.0% |
| ! | TACCTGTGGATTACAGCTTA+GGG | - | chr8_3:22296232-22296251 | None:intergenic | 40.0% |
| ! | TTACCTGTGGATTACAGCTT+AGG | - | chr8_3:22296233-22296252 | None:intergenic | 40.0% |
| TTGCAGGAGTTAATTACCTG+TGG | - | chr8_3:22296246-22296265 | None:intergenic | 40.0% | |
| ! | ACTATAGTTCGTGGTTTTCG+TGG | - | chr8_3:22296330-22296349 | None:intergenic | 40.0% |
| TAGGAGTTTGACGCAAAACA+TGG | + | chr8_3:22296396-22296415 | Msa1282150:intron | 40.0% | |
| AGGAGTTTGACGCAAAACAT+GGG | + | chr8_3:22296397-22296416 | Msa1282150:intron | 40.0% | |
| CTTAGTTTATGTGCGTGTGT+GGG | - | chr8_3:22297274-22297293 | None:intergenic | 40.0% | |
| TCTTAGTTTATGTGCGTGTG+TGG | - | chr8_3:22297275-22297294 | None:intergenic | 40.0% | |
| CATATGCTTGGAAGCTAAAC+TGG | + | chr8_3:22295842-22295861 | Msa1282150:CDS | 40.0% | |
| ! | AGTATGGTGTCTCGTTTTGT+GGG | + | chr8_3:22295910-22295929 | Msa1282150:CDS | 40.0% |
| ACTCCTCTTCATTTCCGAAT+TGG | + | chr8_3:22295976-22295995 | Msa1282150:CDS | 40.0% | |
| TCACCAATTCGGAAATGAAG+AGG | - | chr8_3:22295982-22296001 | None:intergenic | 40.0% | |
| TCTTCATTTCCGAATTGGTG+AGG | + | chr8_3:22295981-22296000 | Msa1282150:CDS | 40.0% | |
| !! | GTCAGGTATTGAATGGATTC+CGG | - | chr8_3:22296039-22296058 | None:intergenic | 40.0% |
| CTCGAAGCAAATTACAAGAG+AGG | + | chr8_3:22296135-22296154 | Msa1282150:CDS | 40.0% | |
| !! | CTAAATCAAGTTGATGAGGC+AGG | + | chr8_3:22296183-22296202 | Msa1282150:CDS | 40.0% |
| ! | TACCTGTGGATTACAGCTTA+GGG | - | chr8_3:22296232-22296251 | None:intergenic | 40.0% |
| ! | TTACCTGTGGATTACAGCTT+AGG | - | chr8_3:22296233-22296252 | None:intergenic | 40.0% |
| TTGCAGGAGTTAATTACCTG+TGG | - | chr8_3:22296246-22296265 | None:intergenic | 40.0% | |
| ! | ACTATAGTTCGTGGTTTTCG+TGG | - | chr8_3:22296330-22296349 | None:intergenic | 40.0% |
| TAGGAGTTTGACGCAAAACA+TGG | + | chr8_3:22296396-22296415 | Msa1282150:intron | 40.0% | |
| AGGAGTTTGACGCAAAACAT+GGG | + | chr8_3:22296397-22296416 | Msa1282150:intron | 40.0% | |
| CTTAGTTTATGTGCGTGTGT+GGG | - | chr8_3:22297274-22297293 | None:intergenic | 40.0% | |
| TCTTAGTTTATGTGCGTGTG+TGG | - | chr8_3:22297275-22297294 | None:intergenic | 40.0% | |
| TTCTGCAAAGCAAGGTGGAT+GGG | - | chr8_3:22295880-22295899 | None:intergenic | 45.0% | |
| ATCCACCTTGCTTTGCAGAA+CGG | + | chr8_3:22295880-22295899 | Msa1282150:CDS | 45.0% | |
| ! | GAGTATGGTGTCTCGTTTTG+TGG | + | chr8_3:22295909-22295928 | Msa1282150:CDS | 45.0% |
| !! | CCTCACAGTCAGGTATTGAA+TGG | - | chr8_3:22296046-22296065 | None:intergenic | 45.0% |
| CCATTCAATACCTGACTGTG+AGG | + | chr8_3:22296043-22296062 | Msa1282150:CDS | 45.0% | |
| CCAGCCAACAAGTACTTGAA+GGG | - | chr8_3:22296115-22296134 | None:intergenic | 45.0% | |
| TTTCGTGGAAATCCCTTCGT+GGG | - | chr8_3:22296315-22296334 | None:intergenic | 45.0% | |
| ! | TTTTCGTGGAAATCCCTTCG+TGG | - | chr8_3:22296316-22296335 | None:intergenic | 45.0% |
| AGTTTGACGCAAAACATGGG+AGG | + | chr8_3:22296400-22296419 | Msa1282150:intron | 45.0% | |
| GTTTGACGCAAAACATGGGA+GGG | + | chr8_3:22296401-22296420 | Msa1282150:intron | 45.0% | |
| AGACATTGCATCAACTGCAG+AGG | + | chr8_3:22297192-22297211 | Msa1282150:CDS | 45.0% | |
| TTCTGCAAAGCAAGGTGGAT+GGG | - | chr8_3:22295880-22295899 | None:intergenic | 45.0% | |
| ATCCACCTTGCTTTGCAGAA+CGG | + | chr8_3:22295880-22295899 | Msa1282150:CDS | 45.0% | |
| ! | GAGTATGGTGTCTCGTTTTG+TGG | + | chr8_3:22295909-22295928 | Msa1282150:CDS | 45.0% |
| !! | CCTCACAGTCAGGTATTGAA+TGG | - | chr8_3:22296046-22296065 | None:intergenic | 45.0% |
| CCATTCAATACCTGACTGTG+AGG | + | chr8_3:22296043-22296062 | Msa1282150:CDS | 45.0% | |
| CCAGCCAACAAGTACTTGAA+GGG | - | chr8_3:22296115-22296134 | None:intergenic | 45.0% | |
| TTTCGTGGAAATCCCTTCGT+GGG | - | chr8_3:22296315-22296334 | None:intergenic | 45.0% | |
| ! | TTTTCGTGGAAATCCCTTCG+TGG | - | chr8_3:22296316-22296335 | None:intergenic | 45.0% |
| AGTTTGACGCAAAACATGGG+AGG | + | chr8_3:22296400-22296419 | Msa1282150:intron | 45.0% | |
| GTTTGACGCAAAACATGGGA+GGG | + | chr8_3:22296401-22296420 | Msa1282150:intron | 45.0% | |
| AGACATTGCATCAACTGCAG+AGG | + | chr8_3:22297192-22297211 | Msa1282150:CDS | 45.0% | |
| GCTTGGAAGCTAAACTGGCA+AGG | + | chr8_3:22295847-22295866 | Msa1282150:CDS | 50.0% | |
| TCTGCAAAGCAAGGTGGATG+GGG | - | chr8_3:22295879-22295898 | None:intergenic | 50.0% | |
| GTTCTGCAAAGCAAGGTGGA+TGG | - | chr8_3:22295881-22295900 | None:intergenic | 50.0% | |
| TCCACCTTGCTTTGCAGAAC+GGG | + | chr8_3:22295881-22295900 | Msa1282150:CDS | 50.0% | |
| TTTGCCCGTTCTGCAAAGCA+AGG | - | chr8_3:22295888-22295907 | None:intergenic | 50.0% | |
| GCAGAACGGGCAAAAGAGTA+TGG | + | chr8_3:22295894-22295913 | Msa1282150:CDS | 50.0% | |
| GAGGCCCTTCAAGTACTTGT+TGG | + | chr8_3:22296108-22296127 | Msa1282150:CDS | 50.0% | |
| ! | CCCTTCAAGTACTTGTTGGC+TGG | + | chr8_3:22296112-22296131 | Msa1282150:CDS | 50.0% |
| GCCAGCCAACAAGTACTTGA+AGG | - | chr8_3:22296116-22296135 | None:intergenic | 50.0% | |
| AGCCCTAAGCTGTAATCCAC+AGG | + | chr8_3:22296227-22296246 | Msa1282150:CDS | 50.0% | |
| ! | GGTGGAACAGGCTTGTTTGT+TGG | + | chr8_3:22297117-22297136 | Msa1282150:intron | 50.0% |
| TCCAGAGCTGGAGCAAAACT+TGG | + | chr8_3:22297229-22297248 | Msa1282150:CDS | 50.0% | |
| GCTTGGAAGCTAAACTGGCA+AGG | + | chr8_3:22295847-22295866 | Msa1282150:CDS | 50.0% | |
| TCTGCAAAGCAAGGTGGATG+GGG | - | chr8_3:22295879-22295898 | None:intergenic | 50.0% | |
| GTTCTGCAAAGCAAGGTGGA+TGG | - | chr8_3:22295881-22295900 | None:intergenic | 50.0% | |
| TCCACCTTGCTTTGCAGAAC+GGG | + | chr8_3:22295881-22295900 | Msa1282150:CDS | 50.0% | |
| TTTGCCCGTTCTGCAAAGCA+AGG | - | chr8_3:22295888-22295907 | None:intergenic | 50.0% | |
| GCAGAACGGGCAAAAGAGTA+TGG | + | chr8_3:22295894-22295913 | Msa1282150:CDS | 50.0% | |
| GAGGCCCTTCAAGTACTTGT+TGG | + | chr8_3:22296108-22296127 | Msa1282150:CDS | 50.0% | |
| ! | CCCTTCAAGTACTTGTTGGC+TGG | + | chr8_3:22296112-22296131 | Msa1282150:CDS | 50.0% |
| GCCAGCCAACAAGTACTTGA+AGG | - | chr8_3:22296116-22296135 | None:intergenic | 50.0% | |
| AGCCCTAAGCTGTAATCCAC+AGG | + | chr8_3:22296227-22296246 | Msa1282150:CDS | 50.0% | |
| ! | GGTGGAACAGGCTTGTTTGT+TGG | + | chr8_3:22297117-22297136 | Msa1282150:intron | 50.0% |
| TCCAGAGCTGGAGCAAAACT+TGG | + | chr8_3:22297229-22297248 | Msa1282150:CDS | 50.0% | |
| AGCAACGCTACATCCCACGA+AGG | + | chr8_3:22296299-22296318 | Msa1282150:intron | 55.0% | |
| GCAACGCTACATCCCACGAA+GGG | + | chr8_3:22296300-22296319 | Msa1282150:intron | 55.0% | |
| TGACGCAAAACATGGGAGGG+TGG | + | chr8_3:22296404-22296423 | Msa1282150:intron | 55.0% | |
| ! | GCCAAGTTTTGCTCCAGCTC+TGG | - | chr8_3:22297233-22297252 | None:intergenic | 55.0% |
| AGCAACGCTACATCCCACGA+AGG | + | chr8_3:22296299-22296318 | Msa1282150:intron | 55.0% | |
| GCAACGCTACATCCCACGAA+GGG | + | chr8_3:22296300-22296319 | Msa1282150:intron | 55.0% | |
| TGACGCAAAACATGGGAGGG+TGG | + | chr8_3:22296404-22296423 | Msa1282150:intron | 55.0% | |
| ! | GCCAAGTTTTGCTCCAGCTC+TGG | - | chr8_3:22297233-22297252 | None:intergenic | 55.0% |
| GCCCGTTCTGCAAAGCAAGG+TGG | - | chr8_3:22295885-22295904 | None:intergenic | 60.0% | |
| CAGTCTCGCACCTCACAGTC+AGG | - | chr8_3:22296056-22296075 | None:intergenic | 60.0% | |
| GCCCGTTCTGCAAAGCAAGG+TGG | - | chr8_3:22295885-22295904 | None:intergenic | 60.0% | |
| CAGTCTCGCACCTCACAGTC+AGG | - | chr8_3:22296056-22296075 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 22295796 | 22297312 | 22295796 | ID=Msa1282150;Name=Msa1282150 |
| chr8_3 | mRNA | 22295796 | 22297312 | 22295796 | ID=Msa1282150-mRNA-1;Parent=Msa1282150;Name=Msa1282150-mRNA-1;_AED=0.25;_eAED=0.26;_QI=0|0|0|1|1|1|2|0|212 |
| chr8_3 | exon | 22295796 | 22296248 | 22295796 | ID=Msa1282150-mRNA-1:exon:7999;Parent=Msa1282150-mRNA-1 |
| chr8_3 | exon | 22297127 | 22297312 | 22297127 | ID=Msa1282150-mRNA-1:exon:8000;Parent=Msa1282150-mRNA-1 |
| chr8_3 | CDS | 22295796 | 22296248 | 22295796 | ID=Msa1282150-mRNA-1:cds;Parent=Msa1282150-mRNA-1 |
| chr8_3 | CDS | 22297127 | 22297312 | 22297127 | ID=Msa1282150-mRNA-1:cds;Parent=Msa1282150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
