AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0678620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678620 MtrunA17_Chr4g0024121 96.914 324 10 0 1 324 3 326 0.0 657
Msa0678620 MtrunA17_Chr2g0322861 71.963 321 86 3 5 324 69 386 2.83e-174 488
Msa0678620 MtrunA17_Chr7g0268501 53.481 316 141 4 9 324 11 320 8.55e-120 347
Msa0678620 MtrunA17_Chr7g0268521 53.481 316 141 4 9 324 11 320 8.55e-120 347
Msa0678620 MtrunA17_Chr3g0128061 46.708 319 169 1 7 324 8 326 9.27e-100 296
Msa0678620 MtrunA17_Chr2g0292241 44.713 331 175 4 1 324 1 330 2.04e-94 284
Msa0678620 MtrunA17_Chr2g0292181 44.548 321 170 4 11 324 20 339 8.43e-92 278
Msa0678620 MtrunA17_Chr5g0402581 42.724 323 183 2 3 324 5 326 1.17e-91 276
Msa0678620 MtrunA17_Chr2g0292211 44.109 331 177 4 1 324 12 341 3.03e-91 276
Msa0678620 MtrunA17_Chr5g0405991 47.484 318 155 6 10 324 8 316 3.89e-91 274
Msa0678620 MtrunA17_Chr5g0402571 41.796 323 186 2 3 324 5 326 5.70e-91 274
Msa0678620 MtrunA17_Chr2g0292261 44.860 321 169 5 11 324 11 330 4.03e-90 273
Msa0678620 MtrunA17_Chr1g0204011 43.731 327 173 6 1 324 4 322 4.56e-90 272
Msa0678620 MtrunA17_Chr5g0404721 48.013 302 154 3 25 324 30 330 9.46e-90 271
Msa0678620 MtrunA17_Chr2g0279041 45.260 327 167 5 5 324 4 325 5.07e-89 269
Msa0678620 MtrunA17_Chr2g0299691 46.906 307 154 5 24 324 55 358 7.06e-89 270
Msa0678620 MtrunA17_Chr8g0371381 45.574 305 160 4 20 324 21 319 1.18e-88 268
Msa0678620 MtrunA17_Chr1g0175561 41.975 324 183 4 5 324 4 326 1.19e-88 268
Msa0678620 MtrunA17_Chr2g0291751 43.202 331 180 4 1 324 1 330 1.31e-88 269
Msa0678620 MtrunA17_Chr7g0258811 41.768 328 186 4 1 324 45 371 1.01e-87 268
Msa0678620 MtrunA17_Chr2g0292251 45.130 308 165 3 20 324 23 329 6.76e-87 265
Msa0678620 MtrunA17_Chr6g0477071 44.951 307 158 4 18 324 47 342 1.06e-86 264
Msa0678620 MtrunA17_Chr2g0292111 43.598 328 174 5 7 324 4 330 1.14e-86 264
Msa0678620 MtrunA17_Chr3g0129051 41.534 313 172 4 11 320 14 318 2.08e-86 262
Msa0678620 MtrunA17_Chr8g0372601 46.026 302 160 3 25 324 30 330 1.05e-85 261
Msa0678620 MtrunA17_Chr1g0188431 41.875 320 175 3 5 324 19 327 2.51e-85 260
Msa0678620 MtrunA17_Chr4g0070951 42.462 325 179 4 5 324 8 329 3.54e-85 259
Msa0678620 MtrunA17_Chr4g0063671 42.547 322 175 4 8 324 4 320 2.03e-84 257
Msa0678620 MtrunA17_Chr2g0292091 42.202 327 184 5 1 324 1 325 5.14e-84 257
Msa0678620 MtrunA17_Chr2g0292151 42.598 331 182 4 1 324 1 330 5.05e-83 255
Msa0678620 MtrunA17_Chr2g0292271 42.462 325 183 3 3 324 7 330 4.47e-82 252
Msa0678620 MtrunA17_Chr1g0164891 45.395 304 160 5 26 324 90 392 5.12e-82 253
Msa0678620 MtrunA17_Chr3g0106921 42.553 329 167 8 4 324 6 320 9.53e-82 250
Msa0678620 MtrunA17_Chr7g0254201 41.776 304 166 4 23 324 18 312 4.88e-81 248
Msa0678620 MtrunA17_Chr3g0114451 42.236 322 175 4 6 324 5 318 5.42e-81 248
Msa0678620 MtrunA17_Chr8g0364291 40.063 317 185 4 11 324 10 324 3.58e-80 247
Msa0678620 MtrunA17_Chr2g0320071 39.938 323 183 4 5 324 3 317 6.35e-80 246
Msa0678620 MtrunA17_Chr2g0292101 41.284 327 188 3 1 324 1 326 1.07e-79 246
Msa0678620 MtrunA17_Chr2g0320101 40.000 320 181 4 6 324 8 317 1.80e-79 244
Msa0678620 MtrunA17_Chr2g0292291 42.547 322 176 6 11 324 12 332 2.59e-79 245
Msa0678620 MtrunA17_Chr1g0157051 41.009 317 178 4 9 323 8 317 2.99e-79 244
Msa0678620 MtrunA17_Chr4g0043391 40.184 326 180 6 7 324 6 324 6.17e-79 243
Msa0678620 MtrunA17_Chr4g0013171 40.426 329 183 6 1 324 1 321 9.07e-79 243
Msa0678620 MtrunA17_Chr1g0194151 40.810 321 184 4 9 324 14 333 1.06e-78 243
Msa0678620 MtrunA17_Chr7g0225221 41.772 316 176 4 11 324 11 320 1.54e-78 242
Msa0678620 MtrunA17_Chr7g0244461 38.365 318 187 3 8 324 3 312 2.15e-78 241
Msa0678620 MtrunA17_Chr6g0460711 39.875 321 181 5 8 324 2 314 3.20e-78 241
Msa0678620 MtrunA17_Chr7g0244451 40.566 318 180 3 8 324 7 316 6.50e-78 240
Msa0678620 MtrunA17_Chr5g0432441 40.312 320 178 5 10 324 15 326 6.95e-78 241
Msa0678620 MtrunA17_Chr4g0038161 40.823 316 182 4 10 324 9 320 7.92e-78 240
Msa0678620 MtrunA17_Chr4g0038171 40.938 320 177 5 10 324 9 321 1.82e-77 239
Msa0678620 MtrunA17_Chr1g0194271 38.720 328 188 4 9 324 14 340 2.02e-77 240
Msa0678620 MtrunA17_Chr2g0296621 44.554 303 154 7 25 324 50 341 2.81e-77 240
Msa0678620 MtrunA17_Chr4g0046131 42.434 304 168 5 24 321 41 343 5.46e-77 239
Msa0678620 MtrunA17_Chr2g0320061 41.694 307 169 4 20 324 20 318 7.09e-77 238
Msa0678620 MtrunA17_Chr1g0213061 40.625 320 175 7 9 324 13 321 9.05e-77 238
Msa0678620 MtrunA17_Chr4g0038151 40.938 320 177 5 9 324 10 321 9.85e-77 238
Msa0678620 MtrunA17_Chr3g0129061 41.270 315 174 4 9 320 12 318 1.02e-76 238
Msa0678620 MtrunA17_Chr5g0401431 41.066 319 183 2 9 323 11 328 2.57e-76 237
Msa0678620 MtrunA17_Chr4g0013191 38.507 335 179 5 10 324 13 340 3.96e-76 237
Msa0678620 MtrunA17_Chr4g0013721 40.909 308 177 4 18 324 93 396 4.92e-76 239
Msa0678620 MtrunA17_Chr5g0400331 44.040 302 163 4 29 324 30 331 5.66e-76 236
Msa0678620 MtrunA17_Chr7g0254231 39.735 302 172 4 23 324 20 311 8.20e-76 235
Msa0678620 MtrunA17_Chr4g0013201 37.425 334 182 4 10 324 13 338 1.07e-75 236
Msa0678620 MtrunA17_Chr2g0320051 41.694 307 169 4 20 324 20 318 3.76e-75 233
Msa0678620 MtrunA17_Chr5g0438021 40.187 321 179 4 10 324 12 325 3.91e-75 234
Msa0678620 MtrunA17_Chr5g0432341 40.606 330 181 8 1 324 1 321 4.47e-75 233
Msa0678620 MtrunA17_Chr5g0432351 40.303 330 182 8 1 324 1 321 9.53e-75 233
Msa0678620 MtrunA17_Chr2g0320091 39.688 320 183 3 6 324 8 318 1.35e-74 232
Msa0678620 MtrunA17_Chr4g0068621 41.042 307 174 5 21 324 34 336 2.12e-74 232
Msa0678620 MtrunA17_Chr4g0013821 39.344 305 180 4 21 324 24 324 5.86e-74 231
Msa0678620 MtrunA17_Chr4g0013181 40.803 299 166 5 29 324 63 353 1.14e-73 231
Msa0678620 MtrunA17_Chr1g0155611 42.244 303 171 3 25 324 46 347 1.55e-73 230
Msa0678620 MtrunA17_Chr1g0148021 41.515 330 185 5 1 324 1 328 1.51e-72 227
Msa0678620 MtrunA17_Chr3g0129041 40.635 315 176 4 9 320 12 318 2.27e-72 226
Msa0678620 MtrunA17_Chr4g0053871 40.566 318 177 4 10 323 14 323 2.72e-72 226
Msa0678620 MtrunA17_Chr2g0278671 41.346 312 173 5 18 324 17 323 5.92e-72 225
Msa0678620 MtrunA17_Chr2g0320031 38.006 321 189 4 6 324 7 319 6.89e-72 225
Msa0678620 MtrunA17_Chr1g0197411 37.461 323 196 5 7 324 9 330 7.20e-72 226
Msa0678620 MtrunA17_Chr4g0076211 41.275 298 166 5 28 324 44 333 6.02e-71 223
Msa0678620 MtrunA17_Chr4g0072091 40.803 299 173 3 24 320 23 319 2.11e-70 221
Msa0678620 MtrunA17_Chr3g0107881 41.033 329 175 9 4 324 7 324 4.79e-70 221
Msa0678620 MtrunA17_Chr5g0421411 40.925 281 157 7 51 324 7 285 6.98e-69 216
Msa0678620 MtrunA17_Chr5g0432331 37.879 330 190 8 1 324 32 352 3.11e-68 217
Msa0678620 MtrunA17_Chr2g0279061 45.385 260 133 4 69 324 12 266 5.02e-68 213
Msa0678620 MtrunA17_Chr3g0106901 38.608 316 185 3 10 324 16 323 5.54e-68 215
Msa0678620 MtrunA17_Chr7g0224371 37.778 315 186 3 11 324 17 322 6.31e-68 215
Msa0678620 MtrunA17_Chr3g0136751 38.554 332 181 6 3 324 4 322 3.01e-66 211
Msa0678620 MtrunA17_Chr6g0467251 35.061 328 195 6 2 320 6 324 1.55e-65 210
Msa0678620 MtrunA17_Chr2g0329641 38.037 326 189 6 7 324 15 335 4.12e-65 208
Msa0678620 MtrunA17_Chr6g0451571 36.875 320 193 6 10 324 19 334 2.97e-63 203
Msa0678620 MtrunA17_Chr4g0074851 35.786 299 185 2 28 324 35 328 3.45e-61 198
Msa0678620 MtrunA17_Chr2g0316481 36.556 331 177 5 23 321 74 403 4.27e-61 200
Msa0678620 MtrunA17_Chr6g0467121 36.527 334 186 7 5 324 42 363 7.69e-61 199
Msa0678620 MtrunA17_Chr6g0467161 35.093 322 193 7 9 324 25 336 1.33e-60 197
Msa0678620 MtrunA17_Chr2g0316791 36.556 331 177 6 23 321 74 403 5.24e-60 197
Msa0678620 MtrunA17_Chr2g0316831 36.637 333 174 7 23 321 110 439 7.60e-60 198
Msa0678620 MtrunA17_Chr1g0181511 35.410 305 188 3 23 324 25 323 5.67e-59 192
Msa0678620 MtrunA17_Chr2g0316191 35.843 332 179 6 23 321 74 404 1.85e-58 193
Msa0678620 MtrunA17_Chr2g0311251 35.135 333 182 6 23 323 9 339 4.54e-58 190
Msa0678620 MtrunA17_Chr1g0181431 35.275 309 183 6 23 324 25 323 3.60e-57 187
Msa0678620 MtrunA17_Chr1g0181481 34.426 305 191 3 23 324 25 323 5.29e-57 187
Msa0678620 MtrunA17_Chr5g0413051 35.577 312 194 5 19 324 67 377 2.82e-55 184
Msa0678620 MtrunA17_Chr4g0075241 33.333 321 203 4 9 324 13 327 4.75e-55 182
Msa0678620 MtrunA17_Chr2g0311241 31.720 372 179 6 23 321 58 427 4.34e-54 182
Msa0678620 MtrunA17_Chr2g0316811 40.991 222 114 2 23 227 48 269 3.29e-46 159
Msa0678620 MtrunA17_Chr4g0004591 31.230 317 158 5 25 321 77 353 1.06e-43 153
Msa0678620 MtrunA17_Chr5g0432401 31.889 323 166 7 4 320 8 282 3.80e-42 147
Msa0678620 MtrunA17_Chr2g0292281 41.232 211 111 5 116 324 17 216 5.88e-41 143
Msa0678620 MtrunA17_Chr2g0316141 32.155 283 142 6 71 321 11 275 1.36e-36 132
Msa0678620 MtrunA17_Chr2g0316181 32.155 283 142 6 71 321 11 275 1.36e-36 132
Msa0678620 MtrunA17_Chr3g0114461 36.458 192 113 3 130 320 5 188 2.09e-34 124
Msa0678620 MtrunA17_Chr3g0114491 52.294 109 51 1 24 131 17 125 6.76e-30 110
Msa0678620 MtrunA17_Chr1g0181491 44.954 109 59 1 23 131 10 117 8.91e-27 103
Msa0678620 MtrunA17_Chr6g0468731 60.294 68 24 1 64 131 22 86 6.60e-22 88.2
Msa0678620 MtrunA17_Chr1g0196191 60.294 68 27 0 67 134 27 94 8.87e-21 87.4
Msa0678620 MtrunA17_Chr1g0181501 28.866 194 128 4 134 324 3 189 4.72e-19 83.6
Msa0678620 MtrunA17_Chr7g0254181 38.333 120 70 2 72 190 6 122 1.37e-18 81.3
Msa0678620 MtrunA17_Chr7g0268491 43.902 82 45 1 243 324 17 97 1.22e-17 77.0
Msa0678620 MtrunA17_Chr5g0432321 36.000 125 71 3 145 269 17 132 2.08e-17 77.4
Msa0678620 MtrunA17_Chr4g0013811 47.945 73 38 0 135 207 6 78 6.27e-17 74.3
Msa0678620 MtrunA17_Chr7g0254171 34.454 119 71 2 68 179 1 119 2.93e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678620 AT1G05260.1 62.500 312 115 2 14 324 15 325 1.30e-145 413
Msa0678620 AT4G11290.1 60.748 321 118 3 9 324 9 326 4.86e-144 409
Msa0678620 AT3G21770.1 59.547 309 123 2 14 321 18 325 2.44e-135 387
Msa0678620 AT5G15180.1 54.375 320 141 5 7 324 13 329 7.14e-121 351
Msa0678620 AT3G01190.1 53.271 321 141 6 8 324 6 321 1.64e-115 337
Msa0678620 AT1G05240.1 50.331 302 138 5 29 324 30 325 2.15e-104 309
Msa0678620 AT1G05250.1 50.331 302 138 5 29 324 30 325 2.15e-104 309
Msa0678620 AT2G18150.1 44.156 308 169 3 19 324 30 336 2.07e-90 273
Msa0678620 AT5G51890.1 42.633 319 172 5 10 324 11 322 2.01e-88 268
Msa0678620 AT2G41480.1 43.558 326 172 6 6 324 8 328 8.19e-87 264
Msa0678620 AT2G39040.1 46.645 313 158 7 19 324 40 350 1.07e-86 265
Msa0678620 AT2G18140.1 43.077 325 181 4 3 324 12 335 5.40e-86 262
Msa0678620 AT4G36430.1 42.138 318 178 4 12 324 14 330 8.78e-86 261
Msa0678620 AT4G33420.1 43.533 317 166 5 10 324 20 325 9.24e-86 261
Msa0678620 AT5G19890.1 43.161 329 173 7 1 324 8 327 9.93e-86 261
Msa0678620 AT3G03670.1 41.195 318 185 2 7 324 6 321 1.60e-85 260
Msa0678620 AT5G14130.1 41.824 318 178 5 10 324 17 330 3.64e-85 260
Msa0678620 AT5G42180.1 42.444 311 174 3 10 320 8 313 4.36e-85 259
Msa0678620 AT5G17820.1 42.357 314 171 4 11 324 10 313 4.52e-85 259
Msa0678620 AT4G33420.2 43.533 317 166 5 10 324 67 372 5.01e-85 261
Msa0678620 AT3G50990.1 46.254 307 162 3 20 324 36 341 7.28e-85 259
Msa0678620 AT5G06720.1 40.881 318 184 3 10 324 17 333 1.12e-84 259
Msa0678620 AT5G14130.2 41.824 318 178 5 10 324 58 371 1.45e-84 259
Msa0678620 AT3G32980.1 42.271 317 177 4 13 324 19 334 1.65e-84 259
Msa0678620 AT5G66390.1 44.127 315 173 3 12 324 20 333 1.68e-84 258
Msa0678620 AT5G39580.1 42.683 328 175 7 1 324 1 319 1.90e-84 258
Msa0678620 AT5G17820.2 42.357 314 171 4 11 324 63 366 5.56e-84 258
Msa0678620 AT4G08770.1 43.175 315 167 6 18 324 17 327 6.55e-84 257
Msa0678620 AT5G64120.1 41.018 334 181 6 1 324 1 328 2.51e-83 255
Msa0678620 AT2G38390.1 40.000 320 187 4 9 324 15 333 4.88e-83 255
Msa0678620 AT2G38380.1 40.625 320 185 4 9 324 15 333 2.95e-82 253
Msa0678620 AT5G06730.1 39.623 318 188 4 10 324 18 334 8.80e-82 252
Msa0678620 AT3G49110.1 41.538 325 182 5 7 324 13 336 1.28e-81 251
Msa0678620 AT2G24800.1 41.967 305 170 3 23 324 29 329 2.68e-81 250
Msa0678620 AT3G49120.1 41.325 317 180 4 13 324 20 335 4.28e-81 250
Msa0678620 AT1G14550.1 41.745 321 177 5 7 324 8 321 3.21e-80 247
Msa0678620 AT2G18980.1 43.465 329 175 5 1 324 1 323 3.05e-79 244
Msa0678620 AT1G44970.1 43.087 311 173 3 17 324 37 346 9.43e-79 244
Msa0678620 AT1G71695.1 43.234 303 162 5 25 324 44 339 2.01e-78 243
Msa0678620 AT4G08780.1 42.308 312 168 6 21 324 20 327 2.37e-78 243
Msa0678620 AT5G64100.1 43.000 300 160 5 28 324 40 331 2.43e-78 242
Msa0678620 AT4G37530.1 41.479 311 177 2 18 324 20 329 2.55e-77 240
Msa0678620 AT4G31760.1 40.566 318 180 5 10 324 15 326 2.62e-77 239
Msa0678620 AT5G05340.1 41.311 305 170 3 22 324 27 324 1.85e-76 237
Msa0678620 AT1G49570.1 41.447 304 173 4 23 322 46 348 2.37e-76 238
Msa0678620 AT1G14540.1 39.688 320 183 5 7 324 4 315 5.63e-76 236
Msa0678620 AT5G19880.1 39.091 330 194 5 1 324 1 329 1.37e-74 233
Msa0678620 AT4G16270.1 42.000 300 167 6 28 324 53 348 1.85e-74 233
Msa0678620 AT4G25980.1 39.875 321 183 5 10 324 10 326 1.91e-74 232
Msa0678620 AT5G58400.1 41.401 314 175 5 10 320 14 321 2.85e-74 232
Msa0678620 AT1G77100.1 42.308 312 166 6 18 324 17 319 2.89e-74 231
Msa0678620 AT2G22420.1 37.855 317 191 5 9 324 8 319 2.62e-73 229
Msa0678620 AT2G35380.1 40.303 330 175 5 9 324 14 335 6.71e-73 229
Msa0678620 AT4G26010.1 38.924 316 177 6 10 324 9 309 1.10e-72 227
Msa0678620 AT4G37520.1 40.196 306 178 2 23 324 25 329 1.32e-72 228
Msa0678620 AT5G64110.1 40.000 300 171 4 28 324 37 330 1.77e-72 227
Msa0678620 AT4G26010.2 38.924 316 177 6 10 324 37 337 1.92e-72 228
Msa0678620 AT5G67400.1 41.100 309 177 2 20 324 22 329 3.46e-72 226
Msa0678620 AT3G49960.1 40.741 324 183 4 9 324 7 329 5.05e-72 226
Msa0678620 AT4G33870.1 36.418 335 177 3 22 321 65 398 2.14e-71 227
Msa0678620 AT4G37520.2 40.196 306 175 3 23 324 25 326 1.72e-70 222
Msa0678620 AT4G17690.1 38.462 312 183 4 16 324 17 322 2.38e-70 222
Msa0678620 AT4G30170.1 40.523 306 173 3 23 324 25 325 4.19e-70 221
Msa0678620 AT2G34060.1 39.803 304 178 3 22 320 39 342 4.21e-70 222
Msa0678620 AT5G22410.1 40.379 317 177 7 9 320 12 321 1.80e-69 219
Msa0678620 AT5G58390.1 38.941 321 179 6 7 320 2 312 3.20e-69 218
Msa0678620 AT1G68850.1 38.079 302 181 4 29 324 34 335 4.58e-69 219
Msa0678620 AT1G34510.1 37.658 316 181 6 10 324 9 309 8.77e-68 214
Msa0678620 AT4G37530.2 42.966 263 145 2 18 276 20 281 1.36e-66 211
Msa0678620 AT1G30870.1 41.472 299 164 6 29 324 55 345 2.38e-66 212
Msa0678620 AT5G47000.1 37.846 325 185 7 9 324 14 330 2.52e-66 212
Msa0678620 AT5G40150.1 37.459 307 185 2 20 324 27 328 7.03e-66 210
Msa0678620 AT4G21960.1 35.435 333 200 6 1 324 1 327 7.20e-66 210
Msa0678620 AT1G24110.1 35.443 316 194 4 12 320 6 318 1.89e-63 204
Msa0678620 AT2G43480.1 36.943 314 187 4 17 324 27 335 3.60e-61 198
Msa0678620 AT3G28200.1 35.505 307 190 2 20 324 16 316 3.83e-61 198
Msa0678620 AT5G24070.1 35.015 337 196 6 5 324 5 335 1.32e-60 197
Msa0678620 AT2G37130.1 33.550 307 194 4 22 324 27 327 5.05e-54 180
Msa0678620 AT2G37130.2 33.887 301 189 4 28 324 2 296 1.90e-53 177
Msa0678620 AT3G17070.1 32.628 331 199 7 5 320 14 335 8.68e-53 177
Msa0678620 AT2G35380.2 39.130 253 132 5 86 324 3 247 1.78e-49 166
Msa0678620 AT5G39580.2 44.776 201 101 4 1 198 1 194 2.41e-48 162
Msa0678620 AT4G25980.2 46.243 173 90 2 19 191 65 234 8.03e-46 157
Msa0678620 AT2G24800.2 46.108 167 87 1 23 189 29 192 1.61e-43 150
Msa0678620 AT3G17070.2 30.824 279 172 7 53 320 4 272 4.56e-39 139
Msa0678620 AT3G42570.1 33.019 106 70 1 87 191 44 149 1.16e-13 68.2

Find 54 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCTCTTGTGCTGATATTT+TGG 0.182200 4_4:-34661614 Msa0678620:CDS
ATTTGTCTTATAGCAATAAT+TGG 0.198586 4_4:-34662127 Msa0678620:CDS
AATGACCTAGTCTTGCTTTC+CGG 0.250529 4_4:-34660981 Msa0678620:intron
ATTTGCAGGGTGGGCCTTAT+TGG 0.254925 4_4:-34661130 Msa0678620:intron
AAAACAATTTGTTCAGCTTT+GGG 0.265521 4_4:+34662058 None:intergenic
CAAAACAATTTGTTCAGCTT+TGG 0.265636 4_4:+34662057 None:intergenic
GCATATTCATTGTCTAGATC+TGG 0.318798 4_4:+34660513 None:intergenic
TAGCCTCGAAGTGTAAGATT+TGG 0.347680 4_4:+34661688 None:intergenic
GGAAGGTTCCAACAGGTAGA+AGG 0.383934 4_4:-34661109 Msa0678620:CDS
GGGAGAATTAATGTCAAGAT+TGG 0.389587 4_4:-34660249 Msa0678620:CDS
TCAAATGTATTACGACTTCC+AGG 0.390217 4_4:+34660426 None:intergenic
CTTTCAGGTGCACACACAAT+TGG 0.390335 4_4:-34660600 Msa0678620:intron
TCAAACCACACTTATTGAAA+TGG 0.390578 4_4:-34660451 Msa0678620:CDS
AGTCGTAATACATTTGATCT+TGG 0.396009 4_4:-34660420 Msa0678620:CDS
ACTGTCCTCCTAACACTCTT+TGG 0.396163 4_4:-34661023 Msa0678620:CDS
TAAGCAATGCAGCATCTGAT+TGG 0.403489 4_4:+34660361 None:intergenic
CAACGTTGCCAAAGAGTGTT+AGG 0.421613 4_4:+34661015 None:intergenic
ACAAACCAATCAAGCTGAAA+AGG 0.448336 4_4:-34661719 Msa0678620:CDS
CCTGTTGGAACCTTCCAATA+AGG 0.463341 4_4:+34661116 None:intergenic
ATTCCAAATCTTACACTTCG+AGG 0.467504 4_4:-34661691 Msa0678620:CDS
CATATTCATTGTCTAGATCT+GGG 0.471482 4_4:+34660514 None:intergenic
GGGAAGCCAGAGTTACTTCA+AGG 0.476148 4_4:-34662158 Msa0678620:CDS
TTAAAACCTTGAAGTAACTC+TGG 0.484915 4_4:+34662152 None:intergenic
GCAGGGTGGGCCTTATTGGA+AGG 0.485522 4_4:-34661126 Msa0678620:intron
CAAGCAAGTAGTTAAGAGAA+GGG 0.488778 4_4:-34660391 Msa0678620:CDS
TCAAGCAAGTAGTTAAGAGA+AGG 0.493471 4_4:-34660392 Msa0678620:CDS
CCTTATTGGAAGGTTCCAAC+AGG 0.506222 4_4:-34661116 Msa0678620:CDS
AGGACAGTGAGGTTGTGAAA+TGG 0.507765 4_4:+34661038 None:intergenic
TAATGAATTTGGCAAGTCCA+TGG 0.508920 4_4:-34660280 Msa0678620:CDS
GGAGAATTAATGTCAAGATT+GGG 0.509355 4_4:-34660248 Msa0678620:CDS
ATACCTTGACAAAACAATCA+TGG 0.512809 4_4:+34661969 None:intergenic
AGCTGCTAGTGATGGTACAC+TGG 0.519920 4_4:+34662012 None:intergenic
ACTCCATCCCTTCTACCTGT+TGG 0.547709 4_4:+34661101 None:intergenic
GTGAGGTTGTGAAATGGAGC+AGG 0.547960 4_4:+34661044 None:intergenic
GAAGGTTCCAACAGGTAGAA+GGG 0.566125 4_4:-34661108 Msa0678620:CDS
ACTCATGCTCAATTGCAGCC+AGG 0.571279 4_4:-34662100 Msa0678620:CDS
GTTCCAACAGGTAGAAGGGA+TGG 0.572964 4_4:-34661104 Msa0678620:CDS
AATGTCAAGATTGGGACTGA+AGG 0.574020 4_4:-34660240 Msa0678620:CDS
CTAACACTCTTTGGCAACGT+TGG 0.575347 4_4:-34661014 Msa0678620:CDS
AGGGTCCATTTCAATAAGTG+TGG 0.580715 4_4:+34660446 None:intergenic
ACACTTATTGAAATGGACCC+TGG 0.584876 4_4:-34660444 Msa0678620:CDS
AAGCAAGTAGTTAAGAGAAG+GGG 0.586770 4_4:-34660390 Msa0678620:CDS
TCAGCACAAGAGACAACACC+AGG 0.593653 4_4:+34661622 None:intergenic
AAACAATTTGTTCAGCTTTG+GGG 0.596812 4_4:+34662059 None:intergenic
ATTTCAGGGATGTGATGCAT+CGG 0.627600 4_4:-34661758 Msa0678620:intron
GCATACCGGAAAGCAAGACT+AGG 0.630686 4_4:+34660976 None:intergenic
ATGAGTGCAGCTGCTAGTGA+TGG 0.632678 4_4:+34662004 None:intergenic
GGTTGTGAAATGGAGCAGGA+AGG 0.663275 4_4:+34661048 None:intergenic
GCTGCTAGTGATGGTACACT+GGG 0.680818 4_4:+34662013 None:intergenic
AGAGTGTTAGGAGGACAGTG+AGG 0.689613 4_4:+34661027 None:intergenic
CAAATGTATTACGACTTCCA+GGG 0.691933 4_4:+34660427 None:intergenic
CGTTGCCAAAGAGTGTTAGG+AGG 0.692796 4_4:+34661018 None:intergenic
ATTGCTCATCAATTTCAACA+AGG 0.698533 4_4:-34660569 Msa0678620:CDS
CAGCACAAGAGACAACACCA+GGG 0.782900 4_4:+34661623 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGATAAATAATGTTATT+TGG - chr4_4:34661048-34661067 Msa0678620:CDS 10.0%
!! TAATTTAAGAAAATAAAAGT+AGG - chr4_4:34661583-34661602 Msa0678620:CDS 10.0%
!!! TTACTTTTTTTTTAAAAACT+CGG + chr4_4:34661630-34661649 None:intergenic 10.0%
!! ATTAGATAAATAATGTTATT+TGG - chr4_4:34661048-34661067 Msa0678620:CDS 10.0%
!! TAATTTAAGAAAATAAAAGT+AGG - chr4_4:34661583-34661602 Msa0678620:CDS 10.0%
!!! TTACTTTTTTTTTAAAAACT+CGG + chr4_4:34661630-34661649 None:intergenic 10.0%
!! ATAAAAACAAACCAAAAAAA+AGG + chr4_4:34660424-34660443 None:intergenic 15.0%
!!! CAAAATATTTTAAAGTGTTT+TGG + chr4_4:34660897-34660916 None:intergenic 15.0%
!!! CAAAACACTTTAAAATATTT+TGG - chr4_4:34660895-34660914 Msa0678620:intron 15.0%
!! GTTTAGTATGTATAATTATT+TGG - chr4_4:34661159-34661178 Msa0678620:intron 15.0%
!!! GTATAATTATTTGGTTTTAT+AGG - chr4_4:34661168-34661187 Msa0678620:intron 15.0%
!! GAAAAATTCTTTAATGAATT+TGG - chr4_4:34662075-34662094 Msa0678620:CDS 15.0%
!! ATAAAAACAAACCAAAAAAA+AGG + chr4_4:34660424-34660443 None:intergenic 15.0%
!!! CAAAATATTTTAAAGTGTTT+TGG + chr4_4:34660897-34660916 None:intergenic 15.0%
!!! CAAAACACTTTAAAATATTT+TGG - chr4_4:34660895-34660914 Msa0678620:intron 15.0%
!! GTTTAGTATGTATAATTATT+TGG - chr4_4:34661159-34661178 Msa0678620:intron 15.0%
!!! GTATAATTATTTGGTTTTAT+AGG - chr4_4:34661168-34661187 Msa0678620:intron 15.0%
!! GAAAAATTCTTTAATGAATT+TGG - chr4_4:34662075-34662094 Msa0678620:CDS 15.0%
!! ATTTGTCTTATAGCAATAAT+TGG - chr4_4:34660239-34660258 Msa0678620:CDS 20.0%
!!! AATATTTTAAAGTGTTTTGG+AGG + chr4_4:34660894-34660913 None:intergenic 20.0%
!!! ATATTTTGGATTTTTGAATC+TGG - chr4_4:34660909-34660928 Msa0678620:intron 20.0%
!!! TATTTTGGATTTTTGAATCT+GGG - chr4_4:34660910-34660929 Msa0678620:intron 20.0%
!! TCTGATATGCTATATATATT+TGG - chr4_4:34660984-34661003 Msa0678620:CDS 20.0%
!! CTGATATGCTATATATATTT+GGG - chr4_4:34660985-34661004 Msa0678620:CDS 20.0%
!! ATTTGTCTTATAGCAATAAT+TGG - chr4_4:34660239-34660258 Msa0678620:CDS 20.0%
!!! AATATTTTAAAGTGTTTTGG+AGG + chr4_4:34660894-34660913 None:intergenic 20.0%
!!! ATATTTTGGATTTTTGAATC+TGG - chr4_4:34660909-34660928 Msa0678620:intron 20.0%
!!! TATTTTGGATTTTTGAATCT+GGG - chr4_4:34660910-34660929 Msa0678620:intron 20.0%
!! TCTGATATGCTATATATATT+TGG - chr4_4:34660984-34661003 Msa0678620:CDS 20.0%
!! CTGATATGCTATATATATTT+GGG - chr4_4:34660985-34661004 Msa0678620:CDS 20.0%
!! AAAACAATTTGTTCAGCTTT+GGG + chr4_4:34660311-34660330 None:intergenic 25.0%
!! TTATTATCTTGTTGTGAATG+TGG - chr4_4:34660571-34660590 Msa0678620:CDS 25.0%
!! TAATGTTATTTGGTTATGCA+TGG - chr4_4:34661058-34661077 Msa0678620:CDS 25.0%
!!! TTTAGTTTGTGTGTAGAATT+TGG + chr4_4:34661415-34661434 None:intergenic 25.0%
! AATAAAAAAAGCAGTCAGAT+GGG + chr4_4:34661476-34661495 None:intergenic 25.0%
!! ACAAGGCTATATAATTTTAC+TGG - chr4_4:34661814-34661833 Msa0678620:intron 25.0%
!! CTATATAATTTTACTGGCAA+GGG - chr4_4:34661820-34661839 Msa0678620:intron 25.0%
!! AAAACAATTTGTTCAGCTTT+GGG + chr4_4:34660311-34660330 None:intergenic 25.0%
!! TTATTATCTTGTTGTGAATG+TGG - chr4_4:34660571-34660590 Msa0678620:CDS 25.0%
!! TAATGTTATTTGGTTATGCA+TGG - chr4_4:34661058-34661077 Msa0678620:CDS 25.0%
!!! TTTAGTTTGTGTGTAGAATT+TGG + chr4_4:34661415-34661434 None:intergenic 25.0%
! AATAAAAAAAGCAGTCAGAT+GGG + chr4_4:34661476-34661495 None:intergenic 25.0%
!! ACAAGGCTATATAATTTTAC+TGG - chr4_4:34661814-34661833 Msa0678620:intron 25.0%
!! CTATATAATTTTACTGGCAA+GGG - chr4_4:34661820-34661839 Msa0678620:intron 25.0%
TTAAAACCTTGAAGTAACTC+TGG + chr4_4:34660217-34660236 None:intergenic 30.0%
! AAACAATTTGTTCAGCTTTG+GGG + chr4_4:34660310-34660329 None:intergenic 30.0%
! CAAAACAATTTGTTCAGCTT+TGG + chr4_4:34660312-34660331 None:intergenic 30.0%
!! TTTCCATGATTGTTTTGTCA+AGG - chr4_4:34660394-34660413 Msa0678620:CDS 30.0%
ATACCTTGACAAAACAATCA+TGG + chr4_4:34660400-34660419 None:intergenic 30.0%
!!! GTCAAGGTATACCTTTTTTT+TGG - chr4_4:34660410-34660429 Msa0678620:CDS 30.0%
!!! GTGTTTTGGAGGTTTTTATA+GGG + chr4_4:34660883-34660902 None:intergenic 30.0%
!!! AGTGTTTTGGAGGTTTTTAT+AGG + chr4_4:34660884-34660903 None:intergenic 30.0%
CAATAAAAAAAGCAGTCAGA+TGG + chr4_4:34661477-34661496 None:intergenic 30.0%
TTGCGCTAACATATGTATTT+CGG - chr4_4:34661494-34661513 Msa0678620:intron 30.0%
!! TTTAAAAAAAAGCACCGTCA+CGG - chr4_4:34661518-34661537 Msa0678620:intron 30.0%
! GTCAATATTTAAAACTGACG+TGG - chr4_4:34661666-34661685 Msa0678620:CDS 30.0%
ACCAAAACTATCATTCTTTC+AGG - chr4_4:34661751-34661770 Msa0678620:CDS 30.0%
! ACCTGAAAGAATGATAGTTT+TGG + chr4_4:34661755-34661774 None:intergenic 30.0%
ATTGCTCATCAATTTCAACA+AGG - chr4_4:34661797-34661816 Msa0678620:intron 30.0%
! GCTATATAATTTTACTGGCA+AGG - chr4_4:34661819-34661838 Msa0678620:intron 30.0%
CATATTCATTGTCTAGATCT+GGG + chr4_4:34661855-34661874 None:intergenic 30.0%
TCAAACCACACTTATTGAAA+TGG - chr4_4:34661915-34661934 Msa0678620:intron 30.0%
AGTCGTAATACATTTGATCT+TGG - chr4_4:34661946-34661965 Msa0678620:intron 30.0%
GGAGAATTAATGTCAAGATT+GGG - chr4_4:34662118-34662137 Msa0678620:CDS 30.0%
TTAAAACCTTGAAGTAACTC+TGG + chr4_4:34660217-34660236 None:intergenic 30.0%
! AAACAATTTGTTCAGCTTTG+GGG + chr4_4:34660310-34660329 None:intergenic 30.0%
! CAAAACAATTTGTTCAGCTT+TGG + chr4_4:34660312-34660331 None:intergenic 30.0%
!! TTTCCATGATTGTTTTGTCA+AGG - chr4_4:34660394-34660413 Msa0678620:CDS 30.0%
ATACCTTGACAAAACAATCA+TGG + chr4_4:34660400-34660419 None:intergenic 30.0%
!!! GTCAAGGTATACCTTTTTTT+TGG - chr4_4:34660410-34660429 Msa0678620:CDS 30.0%
!!! GTGTTTTGGAGGTTTTTATA+GGG + chr4_4:34660883-34660902 None:intergenic 30.0%
!!! AGTGTTTTGGAGGTTTTTAT+AGG + chr4_4:34660884-34660903 None:intergenic 30.0%
CAATAAAAAAAGCAGTCAGA+TGG + chr4_4:34661477-34661496 None:intergenic 30.0%
TTGCGCTAACATATGTATTT+CGG - chr4_4:34661494-34661513 Msa0678620:intron 30.0%
!! TTTAAAAAAAAGCACCGTCA+CGG - chr4_4:34661518-34661537 Msa0678620:intron 30.0%
! GTCAATATTTAAAACTGACG+TGG - chr4_4:34661666-34661685 Msa0678620:CDS 30.0%
ACCAAAACTATCATTCTTTC+AGG - chr4_4:34661751-34661770 Msa0678620:CDS 30.0%
! ACCTGAAAGAATGATAGTTT+TGG + chr4_4:34661755-34661774 None:intergenic 30.0%
ATTGCTCATCAATTTCAACA+AGG - chr4_4:34661797-34661816 Msa0678620:intron 30.0%
! GCTATATAATTTTACTGGCA+AGG - chr4_4:34661819-34661838 Msa0678620:intron 30.0%
CATATTCATTGTCTAGATCT+GGG + chr4_4:34661855-34661874 None:intergenic 30.0%
TCAAACCACACTTATTGAAA+TGG - chr4_4:34661915-34661934 Msa0678620:intron 30.0%
AGTCGTAATACATTTGATCT+TGG - chr4_4:34661946-34661965 Msa0678620:intron 30.0%
GGAGAATTAATGTCAAGATT+GGG - chr4_4:34662118-34662137 Msa0678620:CDS 30.0%
AACTAACATCTGGCATTTCA+GGG - chr4_4:34660594-34660613 Msa0678620:CDS 35.0%
ACAAACCAATCAAGCTGAAA+AGG - chr4_4:34660647-34660666 Msa0678620:intron 35.0%
ATTCCAAATCTTACACTTCG+AGG - chr4_4:34660675-34660694 Msa0678620:intron 35.0%
!! TGTCTCTTGTGCTGATATTT+TGG - chr4_4:34660752-34660771 Msa0678620:intron 35.0%
! GGTTTTTATAGGGTGAGAAA+AGG + chr4_4:34660873-34660892 None:intergenic 35.0%
! TTGGATTTTTGAATCTGGGT+TGG - chr4_4:34660914-34660933 Msa0678620:intron 35.0%
! TGGATTTTTGAATCTGGGTT+GGG - chr4_4:34660915-34660934 Msa0678620:intron 35.0%
ATCATGGCAGAACAAACAAA+TGG + chr4_4:34661208-34661227 None:intergenic 35.0%
ATGATTGACATGGATTTGCA+GGG - chr4_4:34661223-34661242 Msa0678620:intron 35.0%
CTGTACGCTAGTAATGATAA+TGG + chr4_4:34661440-34661459 None:intergenic 35.0%
! ATGTCTTCTATCTGAAGTGT+CGG - chr4_4:34661699-34661718 Msa0678620:CDS 35.0%
GCATATTCATTGTCTAGATC+TGG + chr4_4:34661856-34661875 None:intergenic 35.0%
CAAATGTATTACGACTTCCA+GGG + chr4_4:34661942-34661961 None:intergenic 35.0%
TCAAATGTATTACGACTTCC+AGG + chr4_4:34661943-34661962 None:intergenic 35.0%
TCAAGCAAGTAGTTAAGAGA+AGG - chr4_4:34661974-34661993 Msa0678620:CDS 35.0%
CAAGCAAGTAGTTAAGAGAA+GGG - chr4_4:34661975-34661994 Msa0678620:CDS 35.0%
AAGCAAGTAGTTAAGAGAAG+GGG - chr4_4:34661976-34661995 Msa0678620:CDS 35.0%
TAATGAATTTGGCAAGTCCA+TGG - chr4_4:34662086-34662105 Msa0678620:CDS 35.0%
!!! AATTCTCCCCATTTTTTCCA+TGG + chr4_4:34662106-34662125 None:intergenic 35.0%
GGGAGAATTAATGTCAAGAT+TGG - chr4_4:34662117-34662136 Msa0678620:CDS 35.0%
AACTAACATCTGGCATTTCA+GGG - chr4_4:34660594-34660613 Msa0678620:CDS 35.0%
ACAAACCAATCAAGCTGAAA+AGG - chr4_4:34660647-34660666 Msa0678620:intron 35.0%
ATTCCAAATCTTACACTTCG+AGG - chr4_4:34660675-34660694 Msa0678620:intron 35.0%
!! TGTCTCTTGTGCTGATATTT+TGG - chr4_4:34660752-34660771 Msa0678620:intron 35.0%
! GGTTTTTATAGGGTGAGAAA+AGG + chr4_4:34660873-34660892 None:intergenic 35.0%
! TTGGATTTTTGAATCTGGGT+TGG - chr4_4:34660914-34660933 Msa0678620:intron 35.0%
! TGGATTTTTGAATCTGGGTT+GGG - chr4_4:34660915-34660934 Msa0678620:intron 35.0%
ATCATGGCAGAACAAACAAA+TGG + chr4_4:34661208-34661227 None:intergenic 35.0%
ATGATTGACATGGATTTGCA+GGG - chr4_4:34661223-34661242 Msa0678620:intron 35.0%
CTGTACGCTAGTAATGATAA+TGG + chr4_4:34661440-34661459 None:intergenic 35.0%
! ATGTCTTCTATCTGAAGTGT+CGG - chr4_4:34661699-34661718 Msa0678620:CDS 35.0%
GCATATTCATTGTCTAGATC+TGG + chr4_4:34661856-34661875 None:intergenic 35.0%
CAAATGTATTACGACTTCCA+GGG + chr4_4:34661942-34661961 None:intergenic 35.0%
TCAAATGTATTACGACTTCC+AGG + chr4_4:34661943-34661962 None:intergenic 35.0%
TCAAGCAAGTAGTTAAGAGA+AGG - chr4_4:34661974-34661993 Msa0678620:CDS 35.0%
CAAGCAAGTAGTTAAGAGAA+GGG - chr4_4:34661975-34661994 Msa0678620:CDS 35.0%
AAGCAAGTAGTTAAGAGAAG+GGG - chr4_4:34661976-34661995 Msa0678620:CDS 35.0%
TAATGAATTTGGCAAGTCCA+TGG - chr4_4:34662086-34662105 Msa0678620:CDS 35.0%
!!! AATTCTCCCCATTTTTTCCA+TGG + chr4_4:34662106-34662125 None:intergenic 35.0%
GGGAGAATTAATGTCAAGAT+TGG - chr4_4:34662117-34662136 Msa0678620:CDS 35.0%
! CAGCTTTTAGCATAGAAACC+TGG + chr4_4:34660287-34660306 None:intergenic 40.0%
! ACGTCTTTCATCAGAAGTGT+CGG - chr4_4:34660523-34660542 Msa0678620:CDS 40.0%
GTGAATGTGGAACTAACATC+TGG - chr4_4:34660584-34660603 Msa0678620:CDS 40.0%
GAACTAACATCTGGCATTTC+AGG - chr4_4:34660593-34660612 Msa0678620:CDS 40.0%
ATTTCAGGGATGTGATGCAT+CGG - chr4_4:34660608-34660627 Msa0678620:intron 40.0%
! AGCATCCTTTTCAGCTTGAT+TGG + chr4_4:34660655-34660674 None:intergenic 40.0%
TAGCCTCGAAGTGTAAGATT+TGG + chr4_4:34660681-34660700 None:intergenic 40.0%
!!! CAGGGCATTCTTTTTCAACA+AGG + chr4_4:34660728-34660747 None:intergenic 40.0%
CTTGTTGAAAAAGAATGCCC+TGG - chr4_4:34660726-34660745 Msa0678620:intron 40.0%
TTGTTCTGCCATGATTGACA+TGG - chr4_4:34661213-34661232 Msa0678620:intron 40.0%
CTGCAAATCCATGTCAATCA+TGG + chr4_4:34661224-34661243 None:intergenic 40.0%
CATGATTGACATGGATTTGC+AGG - chr4_4:34661222-34661241 Msa0678620:intron 40.0%
!! AATGACCTAGTCTTGCTTTC+CGG - chr4_4:34661385-34661404 Msa0678620:intron 40.0%
GTGTGTAGAATTTGGCATAC+CGG + chr4_4:34661407-34661426 None:intergenic 40.0%
! GTTGTATTTGATGACCGTGA+CGG + chr4_4:34661535-34661554 None:intergenic 40.0%
AGGGTCCATTTCAATAAGTG+TGG + chr4_4:34661923-34661942 None:intergenic 40.0%
ACACTTATTGAAATGGACCC+TGG - chr4_4:34661922-34661941 Msa0678620:intron 40.0%
TAAGCAATGCAGCATCTGAT+TGG + chr4_4:34662008-34662027 None:intergenic 40.0%
TGGCAAGTCCATGGAAAAAA+TGG - chr4_4:34662095-34662114 Msa0678620:CDS 40.0%
GGCAAGTCCATGGAAAAAAT+GGG - chr4_4:34662096-34662115 Msa0678620:CDS 40.0%
GCAAGTCCATGGAAAAAATG+GGG - chr4_4:34662097-34662116 Msa0678620:CDS 40.0%
AATGTCAAGATTGGGACTGA+AGG - chr4_4:34662126-34662145 Msa0678620:CDS 40.0%
! CAGCTTTTAGCATAGAAACC+TGG + chr4_4:34660287-34660306 None:intergenic 40.0%
! ACGTCTTTCATCAGAAGTGT+CGG - chr4_4:34660523-34660542 Msa0678620:CDS 40.0%
GTGAATGTGGAACTAACATC+TGG - chr4_4:34660584-34660603 Msa0678620:CDS 40.0%
GAACTAACATCTGGCATTTC+AGG - chr4_4:34660593-34660612 Msa0678620:CDS 40.0%
ATTTCAGGGATGTGATGCAT+CGG - chr4_4:34660608-34660627 Msa0678620:intron 40.0%
! AGCATCCTTTTCAGCTTGAT+TGG + chr4_4:34660655-34660674 None:intergenic 40.0%
TAGCCTCGAAGTGTAAGATT+TGG + chr4_4:34660681-34660700 None:intergenic 40.0%
!!! CAGGGCATTCTTTTTCAACA+AGG + chr4_4:34660728-34660747 None:intergenic 40.0%
CTTGTTGAAAAAGAATGCCC+TGG - chr4_4:34660726-34660745 Msa0678620:intron 40.0%
TTGTTCTGCCATGATTGACA+TGG - chr4_4:34661213-34661232 Msa0678620:intron 40.0%
CTGCAAATCCATGTCAATCA+TGG + chr4_4:34661224-34661243 None:intergenic 40.0%
CATGATTGACATGGATTTGC+AGG - chr4_4:34661222-34661241 Msa0678620:intron 40.0%
!! AATGACCTAGTCTTGCTTTC+CGG - chr4_4:34661385-34661404 Msa0678620:intron 40.0%
GTGTGTAGAATTTGGCATAC+CGG + chr4_4:34661407-34661426 None:intergenic 40.0%
! GTTGTATTTGATGACCGTGA+CGG + chr4_4:34661535-34661554 None:intergenic 40.0%
AGGGTCCATTTCAATAAGTG+TGG + chr4_4:34661923-34661942 None:intergenic 40.0%
ACACTTATTGAAATGGACCC+TGG - chr4_4:34661922-34661941 Msa0678620:intron 40.0%
TAAGCAATGCAGCATCTGAT+TGG + chr4_4:34662008-34662027 None:intergenic 40.0%
TGGCAAGTCCATGGAAAAAA+TGG - chr4_4:34662095-34662114 Msa0678620:CDS 40.0%
GGCAAGTCCATGGAAAAAAT+GGG - chr4_4:34662096-34662115 Msa0678620:CDS 40.0%
GCAAGTCCATGGAAAAAATG+GGG - chr4_4:34662097-34662116 Msa0678620:CDS 40.0%
AATGTCAAGATTGGGACTGA+AGG - chr4_4:34662126-34662145 Msa0678620:CDS 40.0%
ATCAGACACAAAGACGTGTC+TGG - chr4_4:34660478-34660497 Msa0678620:CDS 45.0%
CTTCTGATGAAAGACGTGTC+TGG + chr4_4:34660520-34660539 None:intergenic 45.0%
ATTGACATGGATTTGCAGGG+TGG - chr4_4:34661226-34661245 Msa0678620:intron 45.0%
TTGACATGGATTTGCAGGGT+GGG - chr4_4:34661227-34661246 Msa0678620:intron 45.0%
CCTGTTGGAACCTTCCAATA+AGG + chr4_4:34661253-34661272 None:intergenic 45.0%
CCTTATTGGAAGGTTCCAAC+AGG - chr4_4:34661250-34661269 Msa0678620:intron 45.0%
GAAGGTTCCAACAGGTAGAA+GGG - chr4_4:34661258-34661277 Msa0678620:intron 45.0%
AGGACAGTGAGGTTGTGAAA+TGG + chr4_4:34661331-34661350 None:intergenic 45.0%
ACTGTCCTCCTAACACTCTT+TGG - chr4_4:34661343-34661362 Msa0678620:intron 45.0%
!! CAACGTTGCCAAAGAGTGTT+AGG + chr4_4:34661354-34661373 None:intergenic 45.0%
CTAACACTCTTTGGCAACGT+TGG - chr4_4:34661352-34661371 Msa0678620:intron 45.0%
! CTTTCAGGTGCACACACAAT+TGG - chr4_4:34661766-34661785 Msa0678620:intron 45.0%
ATCAGACACAAAGACGTGTC+TGG - chr4_4:34660478-34660497 Msa0678620:CDS 45.0%
CTTCTGATGAAAGACGTGTC+TGG + chr4_4:34660520-34660539 None:intergenic 45.0%
ATTGACATGGATTTGCAGGG+TGG - chr4_4:34661226-34661245 Msa0678620:intron 45.0%
TTGACATGGATTTGCAGGGT+GGG - chr4_4:34661227-34661246 Msa0678620:intron 45.0%
CCTGTTGGAACCTTCCAATA+AGG + chr4_4:34661253-34661272 None:intergenic 45.0%
CCTTATTGGAAGGTTCCAAC+AGG - chr4_4:34661250-34661269 Msa0678620:intron 45.0%
GAAGGTTCCAACAGGTAGAA+GGG - chr4_4:34661258-34661277 Msa0678620:intron 45.0%
AGGACAGTGAGGTTGTGAAA+TGG + chr4_4:34661331-34661350 None:intergenic 45.0%
ACTGTCCTCCTAACACTCTT+TGG - chr4_4:34661343-34661362 Msa0678620:intron 45.0%
!! CAACGTTGCCAAAGAGTGTT+AGG + chr4_4:34661354-34661373 None:intergenic 45.0%
CTAACACTCTTTGGCAACGT+TGG - chr4_4:34661352-34661371 Msa0678620:intron 45.0%
! CTTTCAGGTGCACACACAAT+TGG - chr4_4:34661766-34661785 Msa0678620:intron 45.0%
!!! TTATTTTCTTAAATTAATAT+TGG + chr4_4:34661579-34661598 None:intergenic 5.0%
!!! TTATTTTCTTAAATTAATAT+TGG + chr4_4:34661579-34661598 None:intergenic 5.0%
GGGAAGCCAGAGTTACTTCA+AGG - chr4_4:34660208-34660227 Msa0678620:CDS 50.0%
ACTCATGCTCAATTGCAGCC+AGG - chr4_4:34660266-34660285 Msa0678620:CDS 50.0%
GCTGCTAGTGATGGTACACT+GGG + chr4_4:34660356-34660375 None:intergenic 50.0%
AGCTGCTAGTGATGGTACAC+TGG + chr4_4:34660357-34660376 None:intergenic 50.0%
ATGAGTGCAGCTGCTAGTGA+TGG + chr4_4:34660365-34660384 None:intergenic 50.0%
CAGCACAAGAGACAACACCA+GGG + chr4_4:34660746-34660765 None:intergenic 50.0%
TCAGCACAAGAGACAACACC+AGG + chr4_4:34660747-34660766 None:intergenic 50.0%
TGGGCGTGCGAGAAATTCAT+AGG - chr4_4:34660934-34660953 Msa0678620:intron 50.0%
! ATTTGCAGGGTGGGCCTTAT+TGG - chr4_4:34661236-34661255 Msa0678620:intron 50.0%
GGAAGGTTCCAACAGGTAGA+AGG - chr4_4:34661257-34661276 Msa0678620:intron 50.0%
GTTCCAACAGGTAGAAGGGA+TGG - chr4_4:34661262-34661281 Msa0678620:intron 50.0%
ACTCCATCCCTTCTACCTGT+TGG + chr4_4:34661268-34661287 None:intergenic 50.0%
GGTTGTGAAATGGAGCAGGA+AGG + chr4_4:34661321-34661340 None:intergenic 50.0%
GTGAGGTTGTGAAATGGAGC+AGG + chr4_4:34661325-34661344 None:intergenic 50.0%
! AGAGTGTTAGGAGGACAGTG+AGG + chr4_4:34661342-34661361 None:intergenic 50.0%
!! CGTTGCCAAAGAGTGTTAGG+AGG + chr4_4:34661351-34661370 None:intergenic 50.0%
GCATACCGGAAAGCAAGACT+AGG + chr4_4:34661393-34661412 None:intergenic 50.0%
GGGAAGCCAGAGTTACTTCA+AGG - chr4_4:34660208-34660227 Msa0678620:CDS 50.0%
ACTCATGCTCAATTGCAGCC+AGG - chr4_4:34660266-34660285 Msa0678620:CDS 50.0%
GCTGCTAGTGATGGTACACT+GGG + chr4_4:34660356-34660375 None:intergenic 50.0%
AGCTGCTAGTGATGGTACAC+TGG + chr4_4:34660357-34660376 None:intergenic 50.0%
ATGAGTGCAGCTGCTAGTGA+TGG + chr4_4:34660365-34660384 None:intergenic 50.0%
CAGCACAAGAGACAACACCA+GGG + chr4_4:34660746-34660765 None:intergenic 50.0%
TCAGCACAAGAGACAACACC+AGG + chr4_4:34660747-34660766 None:intergenic 50.0%
TGGGCGTGCGAGAAATTCAT+AGG - chr4_4:34660934-34660953 Msa0678620:intron 50.0%
! ATTTGCAGGGTGGGCCTTAT+TGG - chr4_4:34661236-34661255 Msa0678620:intron 50.0%
GGAAGGTTCCAACAGGTAGA+AGG - chr4_4:34661257-34661276 Msa0678620:intron 50.0%
GTTCCAACAGGTAGAAGGGA+TGG - chr4_4:34661262-34661281 Msa0678620:intron 50.0%
ACTCCATCCCTTCTACCTGT+TGG + chr4_4:34661268-34661287 None:intergenic 50.0%
GGTTGTGAAATGGAGCAGGA+AGG + chr4_4:34661321-34661340 None:intergenic 50.0%
GTGAGGTTGTGAAATGGAGC+AGG + chr4_4:34661325-34661344 None:intergenic 50.0%
! AGAGTGTTAGGAGGACAGTG+AGG + chr4_4:34661342-34661361 None:intergenic 50.0%
!! CGTTGCCAAAGAGTGTTAGG+AGG + chr4_4:34661351-34661370 None:intergenic 50.0%
GCATACCGGAAAGCAAGACT+AGG + chr4_4:34661393-34661412 None:intergenic 50.0%
!! GCAGGGTGGGCCTTATTGGA+AGG - chr4_4:34661240-34661259 Msa0678620:intron 60.0%
!! GCAGGGTGGGCCTTATTGGA+AGG - chr4_4:34661240-34661259 Msa0678620:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 34660206 34662182 34660206 ID=Msa0678620;Name=Msa0678620
chr4_4 mRNA 34660206 34662182 34660206 ID=Msa0678620-mRNA-1;Parent=Msa0678620;Name=Msa0678620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|4|0|324
chr4_4 exon 34661973 34662182 34661973 ID=Msa0678620-mRNA-1:exon:8321;Parent=Msa0678620-mRNA-1
chr4_4 exon 34661582 34661773 34661582 ID=Msa0678620-mRNA-1:exon:8320;Parent=Msa0678620-mRNA-1
chr4_4 exon 34660982 34661144 34660982 ID=Msa0678620-mRNA-1:exon:8319;Parent=Msa0678620-mRNA-1
chr4_4 exon 34660206 34660615 34660206 ID=Msa0678620-mRNA-1:exon:8318;Parent=Msa0678620-mRNA-1
chr4_4 CDS 34661973 34662182 34661973 ID=Msa0678620-mRNA-1:cds;Parent=Msa0678620-mRNA-1
chr4_4 CDS 34661582 34661773 34661582 ID=Msa0678620-mRNA-1:cds;Parent=Msa0678620-mRNA-1
chr4_4 CDS 34660982 34661144 34660982 ID=Msa0678620-mRNA-1:cds;Parent=Msa0678620-mRNA-1
chr4_4 CDS 34660206 34660615 34660206 ID=Msa0678620-mRNA-1:cds;Parent=Msa0678620-mRNA-1
Gene Sequence

>Msa0678620

ATGGGAAGCCAGAGTTACTTCAAGGTTTTAATTATTTGTCTTATAGCAATAATTGGATCAACTCATGCTCAATTGCAGCCAGGTTTCTATGCTAAAAGCTGCCCCAAAGCTGAACAAATTGTTTTGAAGTATGTTCGTGAACACATTCCCAGTGTACCATCACTAGCAGCTGCACTCATTAGACTACATTTCCATGATTGTTTTGTCAAGGGATGTGATGCATCGGTACTTCTTAACTCAACACAAACCAATCAAGCTGAAAAGGATGCTATTCCAAATCTTACACTTCGAGGCTATGAATTCATTGACACAATAAAGAGCCTTGTTGAAAAAGAATGCCCTGGTGTTGTCTCTTGTGCTGATATTTTGGCTTTGACTGCTAGAGATTCTATTCATGCTATTGGTGGGCCTTATTGGAAGGTTCCAACAGGTAGAAGGGATGGAGTCATATCTAAAGCAGCAGATACTTTTACTAGCCTTCCTGCTCCATTTCACAACCTCACTGTCCTCCTAACACTCTTTGGCAACGTTGGACTTGATGCAAATGACCTAGTCTTGCTTTCCGGTGCACACACAATTGGTGTTTCTCATTGCTCATCAATTTCAACAAGGCTATATAATTTTACTGGCAAGGGTGATCAAGACCCAGATCTAGACAATGAATATGCTAAAAATTTGAAAACATTTAAGTGTAAGAACATTAATGATCAAACCACACTTATTGAAATGGACCCTGGAAGTCGTAATACATTTGATCTTGGCTATTTCAAGCAAGTAGTTAAGAGAAGGGGTTTGTTCCAATCAGATGCTGCATTGCTTAAAAGCTCAACAACAAGATCTATTCTTGCACAACATCTTCAATCAAATGAAAAATTCTTTAATGAATTTGGCAAGTCCATGGAAAAAATGGGGAGAATTAATGTCAAGATTGGGACTGAAGGAGAGATCAGAAAGCATTGTGCATTTATAAATTAA

Protein sequence

>Msa0678620

MGSQSYFKVLIICLIAIIGSTHAQLQPGFYAKSCPKAEQIVLKYVREHIPSVPSLAAALIRLHFHDCFVKGCDASVLLNSTQTNQAEKDAIPNLTLRGYEFIDTIKSLVEKECPGVVSCADILALTARDSIHAIGGPYWKVPTGRRDGVISKAADTFTSLPAPFHNLTVLLTLFGNVGLDANDLVLLSGAHTIGVSHCSSISTRLYNFTGKGDQDPDLDNEYAKNLKTFKCKNINDQTTLIEMDPGSRNTFDLGYFKQVVKRRGLFQSDAALLKSSTTRSILAQHLQSNEKFFNEFGKSMEKMGRINVKIGTEGEIRKHCAFIN*