AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295850 MtrunA17_Chr8g0373811 98.339 542 9 0 1 542 1 542 0.0 1092
Msa1295850 MtrunA17_Chr8g0387311 43.902 410 200 5 124 519 179 572 2.24e-117 359
Msa1295850 MtrunA17_Chr4g0030381 41.162 396 216 7 137 523 94 481 5.43e-95 298
Msa1295850 MtrunA17_Chr3g0130121 30.238 420 263 7 122 521 118 527 2.72e-68 229
Msa1295850 MtrunA17_Chr4g0034941 24.257 404 251 12 150 517 87 471 2.94e-19 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295850 AT3G50780.1 62.569 545 175 10 1 541 1 520 0.0 658
Msa1295850 AT3G50780.2 62.569 545 175 10 1 541 1 520 0.0 658
Msa1295850 AT1G63850.1 39.269 438 229 7 107 527 116 533 2.99e-110 339
Msa1295850 AT5G60050.1 42.998 407 212 7 125 521 87 483 2.20e-107 330
Msa1295850 AT2G13690.1 32.853 347 221 6 179 521 198 536 2.06e-61 211
Msa1295850 AT2G24692.1 58.667 75 20 4 303 377 1 64 2.26e-15 71.2

Find 134 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATCATGCTTGGAGTATT+TGG 0.218710 8_3:-54048898 Msa1295850:CDS
CATGCTACTATCTTTAAATT+AGG 0.222566 8_3:+54047709 None:intergenic
TATCACGTCAGCTGCATTTC+CGG 0.251823 8_3:-54048345 Msa1295850:CDS
CTGACGAGTTTGCGCTATTA+TGG 0.269153 8_3:-54048422 Msa1295850:CDS
CTGTTACCCCTGAAGGGTTT+TGG 0.274098 8_3:-54052230 Msa1295850:CDS
GCCATTGAGTTTGGTGAATC+TGG 0.274871 8_3:-54051916 Msa1295850:CDS
TCAAAGGATTCTGAGGCTTA+TGG 0.288465 8_3:+54052175 None:intergenic
AACTCCAAGGGGAAGGAATT+GGG 0.297664 8_3:-54048818 Msa1295850:CDS
CAACTCCAAGGGGAAGGAAT+TGG 0.313501 8_3:-54048819 Msa1295850:CDS
TGGGTGATGTTAGGCTTAAT+AGG 0.325315 8_3:-54052293 Msa1295850:CDS
TATTGGAACATTCCTAATCT+TGG 0.326556 8_3:+54052254 None:intergenic
GTTGGAAGTTTCTTGAAAAC+TGG 0.330998 8_3:-54048108 Msa1295850:CDS
TCAAAAGCTCTTTGAAGATT+AGG 0.335360 8_3:+54048075 None:intergenic
GACGATTCTCACCTTGCCTT+TGG 0.340174 8_3:-54048160 Msa1295850:CDS
ATAGAAACTTGTAACTTGTT+TGG 0.343996 8_3:-54052405 Msa1295850:five_prime_UTR
TCGCATTCTTCGAATTCTTA+AGG 0.353930 8_3:-54051659 Msa1295850:intron
GGACAACACCAAAACCCTTC+AGG 0.357166 8_3:+54052222 None:intergenic
AGAAAGGTGGCCATTGAGTT+TGG 0.361556 8_3:-54051925 Msa1295850:CDS
GTAACTTGTTTGGTTATGTC+TGG 0.364254 8_3:-54052395 Msa1295850:five_prime_UTR
AACTCAATGGCCACCTTTCT+CGG 0.368808 8_3:+54051928 None:intergenic
TGACGAGTTTGCGCTATTAT+GGG 0.369876 8_3:-54048421 Msa1295850:CDS
CTCAGCAGCTAAAGATGTTC+CGG 0.370037 8_3:+54051984 None:intergenic
CTCAAGAGCAACGAGGAAAA+AGG 0.376567 8_3:-54048714 Msa1295850:CDS
AACAAACAGAAATTCATCAT+TGG 0.389222 8_3:+54047788 None:intergenic
CAAAAGAAGAATTCAACTTC+CGG 0.390235 8_3:-54052520 Msa1295850:five_prime_UTR
CCTTCAGGGGTAACAGCTAT+TGG 0.398564 8_3:+54052237 None:intergenic
CAATTGTAGTCACTCATTAG+AGG 0.401429 8_3:+54048240 None:intergenic
CCTTAGGTTGCAGAATTCCT+TGG 0.402321 8_3:-54048936 Msa1295850:intron
AAACTTGTAGAGGAAGGAAT+TGG 0.411429 8_3:-54048186 Msa1295850:CDS
ACGGATGCAGGTCGTTTGAT+AGG 0.415983 8_3:-54048209 Msa1295850:CDS
TGGTGGTGATGAAGAAGGTT+TGG 0.417966 8_3:+54052146 None:intergenic
CTCTAATGAGTGACTACAAT+TGG 0.420651 8_3:-54048239 Msa1295850:CDS
ATGTGGGAAAGTGTGTCTTT+TGG 0.424661 8_3:+54048750 None:intergenic
TTATAAACATGGGTGATGTT+AGG 0.428103 8_3:-54052302 Msa1295850:exon
CAATCTTAAATTAGTTGTGT+TGG 0.431041 8_3:-54052342 Msa1295850:five_prime_UTR
TGACCCCAATTCCTTCCCCT+TGG 0.433432 8_3:+54048814 None:intergenic
TTGAAGCTGATAACCTTTCG+TGG 0.435969 8_3:-54048476 Msa1295850:CDS
AATTCAACTTCCGGAAATAG+TGG 0.436657 8_3:-54052511 Msa1295850:five_prime_UTR
ACAGAATCTCTTTCATCGCT+TGG 0.440395 8_3:+54048516 None:intergenic
CCAAATACTCCAAGCATGAT+TGG 0.442950 8_3:+54048898 None:intergenic
ACAAACAGAAATTCATCATT+GGG 0.451987 8_3:+54047789 None:intergenic
CCAATAGCTGTTACCCCTGA+AGG 0.452433 8_3:-54052237 Msa1295850:CDS
AATTGCCGCGTATCTTTCAA+TGG 0.464873 8_3:+54048285 None:intergenic
TCTTCTTCATCTCCAACCCA+TGG 0.465749 8_3:+54048867 None:intergenic
GGGTGATGTTAGGCTTAATA+GGG 0.472361 8_3:-54052292 Msa1295850:CDS
TTGGAGGCTGTCCCATGGGT+TGG 0.474603 8_3:-54048879 Msa1295850:CDS
TCAGAAATCACCAATCTAGA+TGG 0.476164 8_3:+54052045 None:intergenic
GATTCTCACCTTGCCTTTGG+AGG 0.479335 8_3:-54048157 Msa1295850:CDS
TGCACCTGCACCATCTAGAT+TGG 0.483137 8_3:-54052055 Msa1295850:CDS
ATCGCTTGGTTTATCTGCAA+AGG 0.491835 8_3:+54048530 None:intergenic
CTATATGTCGGTATTGGTAG+AGG 0.492041 8_3:-54048318 Msa1295850:CDS
TCGGTGGAACGCGCGTAACT+TGG 0.492852 8_3:+54048636 None:intergenic
GGAAAACTATATGTCGGTAT+TGG 0.493967 8_3:-54048324 Msa1295850:CDS
CTGTTAAGTTGAGTGTGCAT+AGG 0.496097 8_3:-54051849 Msa1295850:CDS
TCAGTCACCTGCACTGCAAC+CGG 0.496798 8_3:+54052090 None:intergenic
GACAACACCAAAACCCTTCA+GGG 0.497421 8_3:+54052223 None:intergenic
ACGTGATAACGGGACACAAT+CGG 0.504728 8_3:+54048360 None:intergenic
GCTATTATGGGCAAACCAGC+AGG 0.504887 8_3:-54048409 Msa1295850:CDS
TGAGAACAAGTTCGATAATG+TGG 0.506236 8_3:+54048733 None:intergenic
AATTGAAACCATGCCGAGAA+AGG 0.506696 8_3:-54051941 Msa1295850:CDS
AAATGCAGCTGACGTGATAA+CGG 0.507431 8_3:+54048349 None:intergenic
AATGCAGCTGACGTGATAAC+GGG 0.507760 8_3:+54048350 None:intergenic
GATCTGTCTTGTCTTCAAAT+CGG 0.509351 8_3:-54051772 Msa1295850:CDS
CTTGGTTTATCTGCAAAGGT+TGG 0.510362 8_3:+54048534 None:intergenic
AAGAAATTCGTTTCAACACA+GGG 0.510836 8_3:+54048790 None:intergenic
ATCATGCTTGGAGTATTTGG+AGG 0.512304 8_3:-54048895 Msa1295850:CDS
AATGGCCACCTTTCTCGGCA+TGG 0.512463 8_3:+54051933 None:intergenic
CTCATGTGTCCAATCATGCT+TGG 0.513797 8_3:-54048907 Msa1295850:CDS
ATTGGTTACAACACGGATGC+AGG 0.514428 8_3:-54048221 Msa1295850:CDS
GAAGAAATTCGTTTCAACAC+AGG 0.515803 8_3:+54048789 None:intergenic
TTCTGAAACACAACAGGTGA+AGG 0.516765 8_3:+54052201 None:intergenic
GAAAATAATCATCAAAAGCA+TGG 0.517347 8_3:-54053039 Msa1295850:five_prime_UTR
AGGCCATATGTCGAAAATCA+AGG 0.522726 8_3:-54048027 Msa1295850:CDS
AATGTAGTATTGGTGTAGAA+AGG 0.526581 8_3:-54052014 Msa1295850:CDS
GGCAATTGTTGTTGCAAACA+TGG 0.527087 8_3:-54048269 Msa1295850:CDS
ATTTGAAGACAAGACAGATC+TGG 0.528835 8_3:+54051775 None:intergenic
GAAATATATGTTGAAACTGT+TGG 0.528920 8_3:-54051733 Msa1295850:CDS
TCCAGATTCACCAAACTCAA+TGG 0.529486 8_3:+54051915 None:intergenic
TGTTAAGTTGAGTGTGCATA+GGG 0.531583 8_3:-54051848 Msa1295850:CDS
AGTATTTGGAGGCTGTCCCA+TGG 0.534381 8_3:-54048884 Msa1295850:CDS
ATTACTGTCTCTCTTCAAGC+AGG 0.534460 8_3:-54048565 Msa1295850:CDS
GTAATTGCATGAGTTGATTG+TGG 0.536624 8_3:-54047831 Msa1295850:three_prime_UTR
GTATAATCTCTTCAAAGGAG+TGG 0.537681 8_3:-54047758 Msa1295850:three_prime_UTR
ATCAAGGACAAGCCAAGATT+AGG 0.538056 8_3:-54052266 Msa1295850:CDS
TAATCATCAAAAGCATGGAA+TGG 0.539436 8_3:-54053034 Msa1295850:five_prime_UTR
ATCTCTTCAAAGGAGTGGAA+TGG 0.542209 8_3:-54047753 Msa1295850:three_prime_UTR
GAACTATCGATTTCATCTCC+CGG 0.542650 8_3:+54048688 None:intergenic
GATAGGAAACTTGTAGAGGA+AGG 0.546328 8_3:-54048192 Msa1295850:CDS
GGTTGTGGTGGTGATGAAGA+AGG 0.549863 8_3:+54052141 None:intergenic
GATGATCAACAATGTAGTAT+TGG 0.551435 8_3:-54052024 Msa1295850:CDS
TAGTTCGACGATGTCAAAGA+AGG 0.556410 8_3:-54047989 Msa1295850:CDS
ACTCCAAGGGGAAGGAATTG+GGG 0.556660 8_3:-54048817 Msa1295850:CDS
GTAAGACAGCTAACTCCTGC+TGG 0.560813 8_3:+54048394 None:intergenic
CAATAGCTGTTACCCCTGAA+GGG 0.563513 8_3:-54052236 Msa1295850:CDS
ATCTGGAACTTGTGATATGA+AGG 0.566284 8_3:-54051899 Msa1295850:CDS
GTATTTGGAGGCTGTCCCAT+GGG 0.567349 8_3:-54048883 Msa1295850:CDS
TATATGTCGGTATTGGTAGA+GGG 0.569838 8_3:-54048317 Msa1295850:CDS
GGTGTAGAAAGGTCTTTAGC+CGG 0.569948 8_3:-54052003 Msa1295850:CDS
ATCACCAATCTAGATGGTGC+AGG 0.573798 8_3:+54052051 None:intergenic
AGGCTTAATAGGGTGGATCA+AGG 0.573951 8_3:-54052282 Msa1295850:CDS
TATCATGTCATTACAGCTGT+CGG 0.576232 8_3:+54048617 None:intergenic
GAGAACAAGTTCGATAATGT+GGG 0.578262 8_3:+54048734 None:intergenic
CTTCTTCATCTCCAACCCAT+GGG 0.582332 8_3:+54048868 None:intergenic
GGTGGCGCAGAACATTCATT+AGG 0.583277 8_3:-54048047 Msa1295850:CDS
TGAAACCATGCCGAGAAAGG+TGG 0.587285 8_3:-54051938 Msa1295850:CDS
TAACTATATAGTCAAGTCAA+AGG 0.587691 8_3:+54052460 None:intergenic
ATACTTTGTTGATCCTCCAA+AGG 0.591747 8_3:+54048144 None:intergenic
AAATATCAAGCAACCACGAA+AGG 0.592897 8_3:+54048463 None:intergenic
TCAACTGTACTACAACTCCA+AGG 0.597889 8_3:-54048831 Msa1295850:CDS
GGACACATGAGCTGAAGCCA+AGG 0.601789 8_3:+54048919 None:intergenic
CAACTGTACTACAACTCCAA+GGG 0.613126 8_3:-54048830 Msa1295850:CDS
TTGTTGATCCTCCAAAGGCA+AGG 0.614611 8_3:+54048149 None:intergenic
AGGATGAATGAATAAAGTAG+TGG 0.615282 8_3:-54047969 Msa1295850:exon
TGATGTTAGGCTTAATAGGG+TGG 0.622274 8_3:-54052289 Msa1295850:CDS
GTACTACAACTCCAAGGGGA+AGG 0.630843 8_3:-54048825 Msa1295850:CDS
CATGTCATTACAGCTGTCGG+TGG 0.634591 8_3:+54048620 None:intergenic
GTGCAGGTGACTGAGAGAAG+AGG 0.635000 8_3:-54052081 Msa1295850:CDS
TCTTCAAATCGGTGATTGTG+AGG 0.643149 8_3:-54051761 Msa1295850:CDS
GAAGACTATTGTTCTCTCTG+AGG 0.644852 8_3:+54048658 None:intergenic
GTTTGATAGGAAACTTGTAG+AGG 0.658968 8_3:-54048196 Msa1295850:CDS
ATATGTCGGTATTGGTAGAG+GGG 0.663365 8_3:-54048316 Msa1295850:CDS
CATCGTCGAACTATCTGACA+CGG 0.665787 8_3:+54047999 None:intergenic
TTGTAGAGGAAGGAATTGGA+AGG 0.670217 8_3:-54048182 Msa1295850:CDS
ATTTCCGGAAAACTATATGT+CGG 0.671009 8_3:-54048330 Msa1295850:CDS
AACTGTACTACAACTCCAAG+GGG 0.672357 8_3:-54048829 Msa1295850:CDS
TGTTGGTTTGATGTACTGCA+AGG 0.678438 8_3:-54051716 Msa1295850:CDS
TGGAACTTGTGATATGAAGG+TGG 0.685280 8_3:-54051896 Msa1295850:CDS
TAATAGCGCAAACTCGTCAG+CGG 0.686918 8_3:+54048425 None:intergenic
GACTACAATTGGTTACAACA+CGG 0.701296 8_3:-54048228 Msa1295850:CDS
AGTTGATTGTGGATTCTGTG+TGG 0.706200 8_3:-54047820 Msa1295850:three_prime_UTR
ACAACACCAAAACCCTTCAG+GGG 0.710989 8_3:+54052224 None:intergenic
TGTTGCCATTGAAAGATACG+CGG 0.714033 8_3:-54048290 Msa1295850:CDS
ACTTGTTCTCAAGAGCAACG+AGG 0.760638 8_3:-54048721 Msa1295850:CDS
ACTGCAAGGAAATGAAACAG+CGG 0.767063 8_3:-54051702 Msa1295850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTAAAACATTTTGTA+TGG - chr8_3:54049892-54049911 Msa1295850:intron 10.0%
!! CTAAAATAAATTTAGAAATT+TGG + chr8_3:54049921-54049940 None:intergenic 10.0%
!!! CAAATTTCTAAATTTATTTT+AGG - chr8_3:54049919-54049938 Msa1295850:intron 10.0%
!! TTAAAAAAATGATCAAATAT+CGG - chr8_3:54050200-54050219 Msa1295850:intron 10.0%
!!! TTTTTATTTATCAAATAACT+TGG - chr8_3:54050839-54050858 Msa1295850:intron 10.0%
!! ATTAAAACTTTACCTAAAAA+TGG + chr8_3:54047893-54047912 None:intergenic 15.0%
!! TTTATATTATTTCCTCAAAA+GGG + chr8_3:54048112-54048131 None:intergenic 15.0%
!!! TTTTATATTATTTCCTCAAA+AGG + chr8_3:54048113-54048132 None:intergenic 15.0%
!!! TCATTGATTTTTTATAAACA+TGG - chr8_3:54048435-54048454 Msa1295850:CDS 15.0%
!!! CATTGATTTTTTATAAACAT+GGG - chr8_3:54048436-54048455 Msa1295850:CDS 15.0%
!!! TTTCTTTTCTAAAAAGATTT+CGG - chr8_3:54048945-54048964 Msa1295850:intron 15.0%
!!! ATTAGTTTTAAAGCAATTTA+TGG - chr8_3:54049483-54049502 Msa1295850:intron 15.0%
!!! TTAGATATTTTTTTAAGCTA+TGG - chr8_3:54049668-54049687 Msa1295850:intron 15.0%
!! TAAAAACTTTCATAAGATTT+GGG - chr8_3:54050409-54050428 Msa1295850:intron 15.0%
!! ATTTATAGATTATGTTAAGA+AGG + chr8_3:54050790-54050809 None:intergenic 15.0%
!! AACACAAAAATATAAATTGT+AGG + chr8_3:54050914-54050933 None:intergenic 15.0%
!!! TTTTATATAACTGAGTTTAA+CGG - chr8_3:54052809-54052828 Msa1295850:intron 15.0%
!!! AAATTCTTTACTTTAAAGTG+AGG - chr8_3:54048052-54048071 Msa1295850:CDS 20.0%
!!! TATTGTTTATGTTTTCATGA+AGG - chr8_3:54048138-54048157 Msa1295850:CDS 20.0%
!!! AAATTTTTTTCCACTATTTC+CGG + chr8_3:54048250-54048269 None:intergenic 20.0%
!!! GAAAGGAGTATTAAAATTAA+TGG + chr8_3:54049132-54049151 None:intergenic 20.0%
!!! ATTTATGGATGCATATTTTT+TGG - chr8_3:54049498-54049517 Msa1295850:intron 20.0%
!!! TTTATGGATGCATATTTTTT+GGG - chr8_3:54049499-54049518 Msa1295850:intron 20.0%
!! TCATGTAACAAAAAAAATCA+AGG + chr8_3:54049528-54049547 None:intergenic 20.0%
!! ATAAGTAATATTTACATCAC+AGG + chr8_3:54049590-54049609 None:intergenic 20.0%
!!! AAATTTATTTTAGGGCATTT+TGG - chr8_3:54049928-54049947 Msa1295850:intron 20.0%
!!! AATTTATTTTAGGGCATTTT+GGG - chr8_3:54049929-54049948 Msa1295850:intron 20.0%
!!! TTTAAAGCTTTCATAAGATT+TGG - chr8_3:54050354-54050373 Msa1295850:intron 20.0%
!! TTAAAGCTTTCATAAGATTT+GGG - chr8_3:54050355-54050374 Msa1295850:intron 20.0%
!! GTAAAAACTTTCATAAGATT+TGG - chr8_3:54050408-54050427 Msa1295850:intron 20.0%
!! TCAAAAAAGTTATCAAATAG+CGG - chr8_3:54050536-54050555 Msa1295850:intron 20.0%
!! ATTGTATTCTTATTCCTAAA+AGG - chr8_3:54050808-54050827 Msa1295850:intron 20.0%
!!! TAAAAATACTATGACCTTTT+AGG + chr8_3:54050825-54050844 None:intergenic 20.0%
!!! CTACAAGTTTTAACTATAAA+AGG - chr8_3:54050871-54050890 Msa1295850:intron 20.0%
!! TAGGAAATAAAATAAGACAT+AGG + chr8_3:54051066-54051085 None:intergenic 20.0%
!! AAAGATGTAAATGAAGAAAT+GGG + chr8_3:54051413-54051432 None:intergenic 20.0%
!!! GACAGATTTTTTTTTTTGAA+TGG + chr8_3:54051514-54051533 None:intergenic 20.0%
!!! TTTTTGTATAATCTCTTCAA+AGG - chr8_3:54052985-54053004 Msa1295850:five_prime_UTR 20.0%
! GAAAATAATCATCAAAAGCA+TGG - chr8_3:54047709-54047728 Msa1295850:three_prime_UTR 25.0%
!! GGAAATAGTGGAAAAAAATT+TGG - chr8_3:54048249-54048268 Msa1295850:CDS 25.0%
! TAACTATATAGTCAAGTCAA+AGG + chr8_3:54048291-54048310 None:intergenic 25.0%
!!! ATAGAAACTTGTAACTTGTT+TGG - chr8_3:54048343-54048362 Msa1295850:CDS 25.0%
! CAATCTTAAATTAGTTGTGT+TGG - chr8_3:54048406-54048425 Msa1295850:CDS 25.0%
!!! TTTTTCTGAACACTAGTTTT+CGG + chr8_3:54048637-54048656 None:intergenic 25.0%
!!! ATATGAAGGTGGTTTTATTA+GGG - chr8_3:54048863-54048882 Msa1295850:CDS 25.0%
! GAAATATATGTTGAAACTGT+TGG - chr8_3:54049015-54049034 Msa1295850:intron 25.0%
! ATAACAAATGAATATGCAGT+TGG + chr8_3:54049297-54049316 None:intergenic 25.0%
!! AACTGCATATTCATTTGTTA+TGG - chr8_3:54049296-54049315 Msa1295850:intron 25.0%
!! CATATAAGAAGTTTGAGTTT+AGG - chr8_3:54049321-54049340 Msa1295850:intron 25.0%
! TTCAACTGAAATCAAAATAG+CGG + chr8_3:54049855-54049874 None:intergenic 25.0%
!!! ATTTATTTTAGGGCATTTTG+GGG - chr8_3:54049930-54049949 Msa1295850:intron 25.0%
!!! TTTTTTCTTCCTCTGTTTTA+TGG - chr8_3:54050003-54050022 Msa1295850:intron 25.0%
!!! TTCCTCTATCTTTTGATTTT+TGG - chr8_3:54050055-54050074 Msa1295850:intron 25.0%
! TATAATGGTATGACAAATAG+TGG + chr8_3:54050229-54050248 None:intergenic 25.0%
!! TAAGACTTTTGATACTATGT+TGG - chr8_3:54050327-54050346 Msa1295850:intron 25.0%
!!! TTTTTAAGAGTAGTCAATTG+CGG + chr8_3:54050623-54050642 None:intergenic 25.0%
! TAGTTAAAACTTGTAGAGAT+AGG + chr8_3:54050867-54050886 None:intergenic 25.0%
!!! CAAGTTTTAACTATAAAAGG+TGG - chr8_3:54050874-54050893 Msa1295850:intron 25.0%
! GAAATAAAATAAGACATAGG+AGG + chr8_3:54051063-54051082 None:intergenic 25.0%
! CTATGTTGAATTTCATGAAT+AGG + chr8_3:54051085-54051104 None:intergenic 25.0%
! CTATTCATGAAATTCAACAT+AGG - chr8_3:54051083-54051102 Msa1295850:intron 25.0%
! AAGAACCTCACATAATTTAT+TGG - chr8_3:54051169-54051188 Msa1295850:intron 25.0%
! TTGAGATAATGAATACTATC+AGG - chr8_3:54051267-54051286 Msa1295850:intron 25.0%
! CAAAGATATCATCTAAGTTA+AGG - chr8_3:54051357-54051376 Msa1295850:intron 25.0%
! CAAAGATGTAAATGAAGAAA+TGG + chr8_3:54051414-54051433 None:intergenic 25.0%
! AAAAATCTGTCACTACATAA+TGG - chr8_3:54051523-54051542 Msa1295850:intron 25.0%
!!! GCATCAATAGATTTTTAACT+TGG - chr8_3:54051563-54051582 Msa1295850:intron 25.0%
! CTAAGGGAATATTATATGTT+AGG + chr8_3:54051798-54051817 None:intergenic 25.0%
! CTAACATATAATATTCCCTT+AGG - chr8_3:54051796-54051815 Msa1295850:CDS 25.0%
!!! AACAAAGTATTTTGCTTTCT+TGG - chr8_3:54052617-54052636 Msa1295850:intron 25.0%
!!! ACAAAGTATTTTGCTTTCTT+GGG - chr8_3:54052618-54052637 Msa1295850:intron 25.0%
! ACAAACAGAAATTCATCATT+GGG + chr8_3:54052962-54052981 None:intergenic 25.0%
! AACAAACAGAAATTCATCAT+TGG + chr8_3:54052963-54052982 None:intergenic 25.0%
! CATGCTACTATCTTTAAATT+AGG + chr8_3:54053042-54053061 None:intergenic 25.0%
! TAATCATCAAAAGCATGGAA+TGG - chr8_3:54047714-54047733 Msa1295850:three_prime_UTR 30.0%
!!! CCATTCTCTTTTTGCTTTTT+CGG - chr8_3:54047778-54047797 Msa1295850:three_prime_UTR 30.0%
! TCATTGTTTTCAACACTGAA+AGG - chr8_3:54047854-54047873 Msa1295850:three_prime_UTR 30.0%
! CATTGTTTTCAACACTGAAA+GGG - chr8_3:54047855-54047874 Msa1295850:three_prime_UTR 30.0%
!! TTTCAGAACAGACCATTTTT+AGG - chr8_3:54047878-54047897 Msa1295850:three_prime_UTR 30.0%
TCTGATCTGTAGTTAACTAA+AGG - chr8_3:54048003-54048022 Msa1295850:CDS 30.0%
CTGATCTGTAGTTAACTAAA+GGG - chr8_3:54048004-54048023 Msa1295850:CDS 30.0%
!! TCTTTACTTTAAAGTGAGGT+TGG - chr8_3:54048056-54048075 Msa1295850:CDS 30.0%
!!! ACAAGTGTTGATTTTCATGA+AGG - chr8_3:54048191-54048210 Msa1295850:CDS 30.0%
CAAAAGAAGAATTCAACTTC+CGG - chr8_3:54048228-54048247 Msa1295850:CDS 30.0%
TTATAAACATGGGTGATGTT+AGG - chr8_3:54048446-54048465 Msa1295850:CDS 30.0%
TATTGGAACATTCCTAATCT+TGG + chr8_3:54048497-54048516 None:intergenic 30.0%
!! GTTTTATTCAAAGGATTCTG+AGG + chr8_3:54048583-54048602 None:intergenic 30.0%
!!! GAAGGTTTGGTTTTATTCAA+AGG + chr8_3:54048592-54048611 None:intergenic 30.0%
GATGATCAACAATGTAGTAT+TGG - chr8_3:54048724-54048743 Msa1295850:CDS 30.0%
!! AATGTAGTATTGGTGTAGAA+AGG - chr8_3:54048734-54048753 Msa1295850:CDS 30.0%
!!! GATATGAAGGTGGTTTTATT+AGG - chr8_3:54048862-54048881 Msa1295850:CDS 30.0%
CATGAAATAACTCAACAGAA+AGG + chr8_3:54049149-54049168 None:intergenic 30.0%
TCCCTTATGATAAATCTTTC+CGG - chr8_3:54049170-54049189 Msa1295850:intron 30.0%
ACCGGAAAGATTTATCATAA+GGG + chr8_3:54049174-54049193 None:intergenic 30.0%
TACCGGAAAGATTTATCATA+AGG + chr8_3:54049175-54049194 None:intergenic 30.0%
GTTTGATTATACATGTCCTT+TGG - chr8_3:54049213-54049232 Msa1295850:intron 30.0%
AATAGCAATTTACAAGCCAA+AGG + chr8_3:54049232-54049251 None:intergenic 30.0%
AGAAACATTGCGATTATGAA+AGG - chr8_3:54049404-54049423 Msa1295850:intron 30.0%
GAAACATTGCGATTATGAAA+GGG - chr8_3:54049405-54049424 Msa1295850:intron 30.0%
TGATAAAACAAACCTCTTGT+TGG - chr8_3:54049631-54049650 Msa1295850:intron 30.0%
TGCCAAAAATCAAAAGATAG+AGG + chr8_3:54050060-54050079 None:intergenic 30.0%
TTCAACATAGTAGTCAATCT+CGG + chr8_3:54050300-54050319 None:intergenic 30.0%
CAAAATAATGAGACTGCTTA+GGG + chr8_3:54050956-54050975 None:intergenic 30.0%
TCAAAATAATGAGACTGCTT+AGG + chr8_3:54050957-54050976 None:intergenic 30.0%
! ACCATTTTGTTCTGATGTAT+TGG - chr8_3:54050976-54050995 Msa1295850:intron 30.0%
TCCAATACATCAGAACAAAA+TGG + chr8_3:54050980-54050999 None:intergenic 30.0%
TATATTGGAGGACATCAAAA+GGG + chr8_3:54051009-54051028 None:intergenic 30.0%
ATATATTGGAGGACATCAAA+AGG + chr8_3:54051010-54051029 None:intergenic 30.0%
CACTGGATTATATATATTGG+AGG + chr8_3:54051021-54051040 None:intergenic 30.0%
GGACACTGGATTATATATAT+TGG + chr8_3:54051024-54051043 None:intergenic 30.0%
!! TAATGGTACCTCCATTTTTA+GGG + chr8_3:54051142-54051161 None:intergenic 30.0%
GAACACCAATAAATTATGTG+AGG + chr8_3:54051177-54051196 None:intergenic 30.0%
!! TTCTTTGGAAAGTGTTTCTT+TGG + chr8_3:54051228-54051247 None:intergenic 30.0%
!! TGTCAGATTTCACTTTTCTT+TGG + chr8_3:54051243-54051262 None:intergenic 30.0%
AGTGACAAATTAAACTGAGA+TGG + chr8_3:54051463-54051482 None:intergenic 30.0%
ATTACACTTTGATCGTTATG+TGG - chr8_3:54051627-54051646 Msa1295850:intron 30.0%
!! ATATATGTGCTGCTTTATTC+AGG - chr8_3:54051658-54051677 Msa1295850:intron 30.0%
!! TATATGTGCTGCTTTATTCA+GGG - chr8_3:54051659-54051678 Msa1295850:intron 30.0%
ATGACTTGAATACTTCCATT+TGG - chr8_3:54051743-54051762 Msa1295850:CDS 30.0%
TTCAATGTTTCTTTGCCAAA+TGG + chr8_3:54051761-54051780 None:intergenic 30.0%
AGATGAAGAAGAAGAAAAAG+TGG - chr8_3:54051892-54051911 Msa1295850:CDS 30.0%
AAGAAATTCGTTTCAACACA+GGG + chr8_3:54051961-54051980 None:intergenic 30.0%
ATTTCCGGAAAACTATATGT+CGG - chr8_3:54052418-54052437 Msa1295850:five_prime_UTR 30.0%
! AATACCGACATATAGTTTTC+CGG + chr8_3:54052425-54052444 None:intergenic 30.0%
! TCAAAAGCTCTTTGAAGATT+AGG + chr8_3:54052676-54052695 None:intergenic 30.0%
! TAATCTTCAAAGAGCTTTTG+AGG - chr8_3:54052675-54052694 Msa1295850:intron 30.0%
! TTACCTTGATTTTCGACATA+TGG + chr8_3:54052727-54052746 None:intergenic 30.0%
AGGATGAATGAATAAAGTAG+TGG - chr8_3:54052779-54052798 Msa1295850:intron 30.0%
CCGAAAAAGCAAAAAGAGAA+TGG + chr8_3:54047781-54047800 None:intergenic 35.0%
AATTCAACTTCCGGAAATAG+TGG - chr8_3:54048237-54048256 Msa1295850:CDS 35.0%
!! GTAACTTGTTTGGTTATGTC+TGG - chr8_3:54048353-54048372 Msa1295850:CDS 35.0%
AACTAGTGTTCAGAAAAAGC+CGG - chr8_3:54048639-54048658 Msa1295850:CDS 35.0%
TCAGAAATCACCAATCTAGA+TGG + chr8_3:54048706-54048725 None:intergenic 35.0%
! ATCTGGAACTTGTGATATGA+AGG - chr8_3:54048849-54048868 Msa1295850:CDS 35.0%
!!! TGGTTTTATTAGGGAAGCAA+GGG - chr8_3:54048872-54048891 Msa1295850:CDS 35.0%
!! TGTTAAGTTGAGTGTGCATA+GGG - chr8_3:54048900-54048919 Msa1295850:CDS 35.0%
ATTTGAAGACAAGACAGATC+TGG + chr8_3:54048976-54048995 None:intergenic 35.0%
GATCTGTCTTGTCTTCAAAT+CGG - chr8_3:54048976-54048995 Msa1295850:intron 35.0%
TCGCATTCTTCGAATTCTTA+AGG - chr8_3:54049089-54049108 Msa1295850:intron 35.0%
CAAACCATATATCAAGCTGA+CGG + chr8_3:54049198-54049217 None:intergenic 35.0%
TACCACTGCTTCTAATGATT+TGG - chr8_3:54049252-54049271 Msa1295850:intron 35.0%
AACCAAATCATTAGAAGCAG+TGG + chr8_3:54049257-54049276 None:intergenic 35.0%
TTCTGCAGTGAAATGAAAAC+TGG - chr8_3:54049432-54049451 Msa1295850:intron 35.0%
!!! ATGGATGCATATTTTTTGGG+AGG - chr8_3:54049502-54049521 Msa1295850:intron 35.0%
! ACCAAATTGACTCTGTTGTA+TGG - chr8_3:54049962-54049981 Msa1295850:intron 35.0%
ACCATACAACAGAGTCAATT+TGG + chr8_3:54049966-54049985 None:intergenic 35.0%
CAAGAGAAACCATAAAACAG+AGG + chr8_3:54050015-54050034 None:intergenic 35.0%
! TATCCCGCTATAGCATTTTT+GGG - chr8_3:54050575-54050594 Msa1295850:intron 35.0%
GTCACAACAGTTTCAATTCA+TGG + chr8_3:54050731-54050750 None:intergenic 35.0%
TAATCCAGTGTCCTACTATT+TGG - chr8_3:54051031-54051050 Msa1295850:intron 35.0%
! CACATACCTTTTCGACAAAT+GGG + chr8_3:54051116-54051135 None:intergenic 35.0%
! ACACATACCTTTTCGACAAA+TGG + chr8_3:54051117-54051136 None:intergenic 35.0%
!! CTAATGGTACCTCCATTTTT+AGG + chr8_3:54051143-54051162 None:intergenic 35.0%
GAAGAAATTCGTTTCAACAC+AGG + chr8_3:54051962-54051981 None:intergenic 35.0%
GAGAACAAGTTCGATAATGT+GGG + chr8_3:54052017-54052036 None:intergenic 35.0%
TGAGAACAAGTTCGATAATG+TGG + chr8_3:54052018-54052037 None:intergenic 35.0%
TATCATGTCATTACAGCTGT+CGG + chr8_3:54052134-54052153 None:intergenic 35.0%
AAATATCAAGCAACCACGAA+AGG + chr8_3:54052288-54052307 None:intergenic 35.0%
GGAAAACTATATGTCGGTAT+TGG - chr8_3:54052424-54052443 Msa1295850:five_prime_UTR 35.0%
!! TATATGTCGGTATTGGTAGA+GGG - chr8_3:54052431-54052450 Msa1295850:five_prime_UTR 35.0%
CAATTGTAGTCACTCATTAG+AGG + chr8_3:54052511-54052530 None:intergenic 35.0%
CTCTAATGAGTGACTACAAT+TGG - chr8_3:54052509-54052528 Msa1295850:five_prime_UTR 35.0%
GACTACAATTGGTTACAACA+CGG - chr8_3:54052520-54052539 Msa1295850:five_prime_UTR 35.0%
GTTTGATAGGAAACTTGTAG+AGG - chr8_3:54052552-54052571 Msa1295850:five_prime_UTR 35.0%
AAACTTGTAGAGGAAGGAAT+TGG - chr8_3:54052562-54052581 Msa1295850:five_prime_UTR 35.0%
ATACTTTGTTGATCCTCCAA+AGG + chr8_3:54052607-54052626 None:intergenic 35.0%
! AGTATTTTGCTTTCTTGGGT+TGG - chr8_3:54052622-54052641 Msa1295850:intron 35.0%
GTTGGAAGTTTCTTGAAAAC+TGG - chr8_3:54052640-54052659 Msa1295850:intron 35.0%
!! GTAATTGCATGAGTTGATTG+TGG - chr8_3:54052917-54052936 Msa1295850:five_prime_UTR 35.0%
GTATAATCTCTTCAAAGGAG+TGG - chr8_3:54052990-54053009 Msa1295850:five_prime_UTR 35.0%
! TTCCTTTGTTGACCCTTTTG+AGG - chr8_3:54048097-54048116 Msa1295850:CDS 40.0%
TTCCTCAAAAGGGTCAACAA+AGG + chr8_3:54048102-54048121 None:intergenic 40.0%
TGGGTGATGTTAGGCTTAAT+AGG - chr8_3:54048455-54048474 Msa1295850:CDS 40.0%
GGGTGATGTTAGGCTTAATA+GGG - chr8_3:54048456-54048475 Msa1295850:CDS 40.0%
TGATGTTAGGCTTAATAGGG+TGG - chr8_3:54048459-54048478 Msa1295850:CDS 40.0%
ATCAAGGACAAGCCAAGATT+AGG - chr8_3:54048482-54048501 Msa1295850:CDS 40.0%
!! TTCTGAAACACAACAGGTGA+AGG + chr8_3:54048550-54048569 None:intergenic 40.0%
!!! TGGCTTTTCTGAAACACAAC+AGG + chr8_3:54048556-54048575 None:intergenic 40.0%
!! TCAAAGGATTCTGAGGCTTA+TGG + chr8_3:54048576-54048595 None:intergenic 40.0%
!!! TGAACACTAGTTTTCGGTTG+CGG + chr8_3:54048631-54048650 None:intergenic 40.0%
! CTCGGCATGGTTTCAATTTT+CGG + chr8_3:54048805-54048824 None:intergenic 40.0%
AATTGAAACCATGCCGAGAA+AGG - chr8_3:54048807-54048826 Msa1295850:CDS 40.0%
TCCAGATTCACCAAACTCAA+TGG + chr8_3:54048836-54048855 None:intergenic 40.0%
TGGAACTTGTGATATGAAGG+TGG - chr8_3:54048852-54048871 Msa1295850:CDS 40.0%
!!! GTGGTTTTATTAGGGAAGCA+AGG - chr8_3:54048871-54048890 Msa1295850:CDS 40.0%
!! CTGTTAAGTTGAGTGTGCAT+AGG - chr8_3:54048899-54048918 Msa1295850:CDS 40.0%
TCTTCAAATCGGTGATTGTG+AGG - chr8_3:54048987-54049006 Msa1295850:intron 40.0%
!! TGTTGGTTTGATGTACTGCA+AGG - chr8_3:54049032-54049051 Msa1295850:intron 40.0%
ACTGCAAGGAAATGAAACAG+CGG - chr8_3:54049046-54049065 Msa1295850:intron 40.0%
ATATATCAAGCTGACGGTAC+CGG + chr8_3:54049192-54049211 None:intergenic 40.0%
CCAATTGAGTAACCAACAAG+AGG + chr8_3:54049646-54049665 None:intergenic 40.0%
! CCTCTTGTTGGTTACTCAAT+TGG - chr8_3:54049643-54049662 Msa1295850:intron 40.0%
AATCAAAATAGCGGCTGAAG+TGG + chr8_3:54049846-54049865 None:intergenic 40.0%
AACCTCAAAAGTTGGATAGC+GGG + chr8_3:54050258-54050277 None:intergenic 40.0%
CAACCTCAAAAGTTGGATAG+CGG + chr8_3:54050259-54050278 None:intergenic 40.0%
TAGTAGTCAATCTCGGATAG+CGG + chr8_3:54050293-54050312 None:intergenic 40.0%
! CTATCCCGCTATAGCATTTT+TGG - chr8_3:54050574-54050593 Msa1295850:intron 40.0%
! ATCCCGCTATAGCATTTTTG+GGG - chr8_3:54050576-54050595 Msa1295850:intron 40.0%
ATAATGAGACTGCTTAGGGA+AGG + chr8_3:54050952-54050971 None:intergenic 40.0%
AGATCCAAATAGTAGGACAC+TGG + chr8_3:54051038-54051057 None:intergenic 40.0%
GGAGGAAAGATCCAAATAGT+AGG + chr8_3:54051045-54051064 None:intergenic 40.0%
TTTGAGCCCATTTGTCGAAA+AGG - chr8_3:54051107-54051126 Msa1295850:intron 40.0%
GGTATGTGTGTCCCTAAAAA+TGG - chr8_3:54051128-54051147 Msa1295850:intron 40.0%
ATGTGTGTCCCTAAAAATGG+AGG - chr8_3:54051131-54051150 Msa1295850:intron 40.0%
!! AATGGAGGTACCATTAGACT+AGG - chr8_3:54051146-54051165 Msa1295850:intron 40.0%
TGAGGTTCTTCCTAGTCTAA+TGG + chr8_3:54051159-54051178 None:intergenic 40.0%
ACTATCAGGCACATAAACAC+AGG - chr8_3:54051281-54051300 Msa1295850:intron 40.0%
CACATAAACACAGGTCTTAG+TGG - chr8_3:54051290-54051309 Msa1295850:intron 40.0%
CAAGGAATTCTGCAACCTAA+GGG + chr8_3:54051814-54051833 None:intergenic 40.0%
CCAAATACTCCAAGCATGAT+TGG + chr8_3:54051853-54051872 None:intergenic 40.0%
! CCAATCATGCTTGGAGTATT+TGG - chr8_3:54051850-54051869 Msa1295850:CDS 40.0%
! ATCATGCTTGGAGTATTTGG+AGG - chr8_3:54051853-54051872 Msa1295850:CDS 40.0%
TCAACTGTACTACAACTCCA+AGG - chr8_3:54051917-54051936 Msa1295850:CDS 40.0%
CAACTGTACTACAACTCCAA+GGG - chr8_3:54051918-54051937 Msa1295850:CDS 40.0%
AACTGTACTACAACTCCAAG+GGG - chr8_3:54051919-54051938 Msa1295850:CDS 40.0%
!!! AAGTGTGTCTTTTGGGACAT+TGG + chr8_3:54051993-54052012 None:intergenic 40.0%
!! TGTGGGAAAGTGTGTCTTTT+GGG + chr8_3:54052000-54052019 None:intergenic 40.0%
!! ATGTGGGAAAGTGTGTCTTT+TGG + chr8_3:54052001-54052020 None:intergenic 40.0%
!! GAACTATCGATTTCATCTCC+CGG + chr8_3:54052063-54052082 None:intergenic 40.0%
GAAGACTATTGTTCTCTCTG+AGG + chr8_3:54052093-54052112 None:intergenic 40.0%
ATTACTGTCTCTCTTCAAGC+AGG - chr8_3:54052183-54052202 Msa1295850:CDS 40.0%
CTTGGTTTATCTGCAAAGGT+TGG + chr8_3:54052217-54052236 None:intergenic 40.0%
ATCGCTTGGTTTATCTGCAA+AGG + chr8_3:54052221-54052240 None:intergenic 40.0%
ACAGAATCTCTTTCATCGCT+TGG + chr8_3:54052235-54052254 None:intergenic 40.0%
TTGAAGCTGATAACCTTTCG+TGG - chr8_3:54052272-54052291 Msa1295850:CDS 40.0%
TGACGAGTTTGCGCTATTAT+GGG - chr8_3:54052327-54052346 Msa1295850:five_prime_UTR 40.0%
AAATGCAGCTGACGTGATAA+CGG + chr8_3:54052402-54052421 None:intergenic 40.0%
!! CTATATGTCGGTATTGGTAG+AGG - chr8_3:54052430-54052449 Msa1295850:five_prime_UTR 40.0%
!! ATATGTCGGTATTGGTAGAG+GGG - chr8_3:54052432-54052451 Msa1295850:five_prime_UTR 40.0%
TGTTGCCATTGAAAGATACG+CGG - chr8_3:54052458-54052477 Msa1295850:five_prime_UTR 40.0%
AATTGCCGCGTATCTTTCAA+TGG + chr8_3:54052466-54052485 None:intergenic 40.0%
! GGCAATTGTTGTTGCAAACA+TGG - chr8_3:54052479-54052498 Msa1295850:five_prime_UTR 40.0%
GATAGGAAACTTGTAGAGGA+AGG - chr8_3:54052556-54052575 Msa1295850:five_prime_UTR 40.0%
TTGTAGAGGAAGGAATTGGA+AGG - chr8_3:54052566-54052585 Msa1295850:five_prime_UTR 40.0%
!!! TTCAAAGAGCTTTTGAGGTC+TGG - chr8_3:54052680-54052699 Msa1295850:intron 40.0%
AGGCCATATGTCGAAAATCA+AGG - chr8_3:54052721-54052740 Msa1295850:intron 40.0%
TAGTTCGACGATGTCAAAGA+AGG - chr8_3:54052759-54052778 Msa1295850:intron 40.0%
! TTTTGTCAGCTGCTGGAAAA+AGG + chr8_3:54052872-54052891 None:intergenic 40.0%
! CTAAACTTTTTGTCAGCTGC+TGG + chr8_3:54052879-54052898 None:intergenic 40.0%
AGTTGATTGTGGATTCTGTG+TGG - chr8_3:54052928-54052947 Msa1295850:five_prime_UTR 40.0%
ATCTCTTCAAAGGAGTGGAA+TGG - chr8_3:54052995-54053014 Msa1295850:five_prime_UTR 40.0%
AGGCTTAATAGGGTGGATCA+AGG - chr8_3:54048466-54048485 Msa1295850:CDS 45.0%
CAATAGCTGTTACCCCTGAA+GGG - chr8_3:54048512-54048531 Msa1295850:CDS 45.0%
ACAACACCAAAACCCTTCAG+GGG + chr8_3:54048527-54048546 None:intergenic 45.0%
GACAACACCAAAACCCTTCA+GGG + chr8_3:54048528-54048547 None:intergenic 45.0%
! TGGTGGTGATGAAGAAGGTT+TGG + chr8_3:54048605-54048624 None:intergenic 45.0%
ATCACCAATCTAGATGGTGC+AGG + chr8_3:54048700-54048719 None:intergenic 45.0%
GGTGTAGAAAGGTCTTTAGC+CGG - chr8_3:54048745-54048764 Msa1295850:CDS 45.0%
CTCAGCAGCTAAAGATGTTC+CGG + chr8_3:54048767-54048786 None:intergenic 45.0%
AACTCAATGGCCACCTTTCT+CGG + chr8_3:54048823-54048842 None:intergenic 45.0%
AGAAAGGTGGCCATTGAGTT+TGG - chr8_3:54048823-54048842 Msa1295850:CDS 45.0%
! GCCATTGAGTTTGGTGAATC+TGG - chr8_3:54048832-54048851 Msa1295850:CDS 45.0%
GGTACCGTCAGCTTGATATA+TGG - chr8_3:54049191-54049210 Msa1295850:intron 45.0%
TAGTCAATAGCTGCCGATAG+CGG - chr8_3:54049701-54049720 Msa1295850:intron 45.0%
TGCCACTATAGAAGCTGAAG+CGG + chr8_3:54049805-54049824 None:intergenic 45.0%
CAGCTTCTATAGTGGCATAG+CGG - chr8_3:54049808-54049827 Msa1295850:intron 45.0%
!! GATAGCGGGTTAGCGTATAA+TGG + chr8_3:54050244-54050263 None:intergenic 45.0%
! AACCCGCTATCCAACTTTTG+AGG - chr8_3:54050253-54050272 Msa1295850:intron 45.0%
!!! CGCTATCCAACTTTTGAGGT+TGG - chr8_3:54050257-54050276 Msa1295850:intron 45.0%
TAGAGGCCAACCTCAAAAGT+TGG + chr8_3:54050266-54050285 None:intergenic 45.0%
GACCCCAAAAATGCTATAGC+GGG + chr8_3:54050581-54050600 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG + chr8_3:54050582-54050601 None:intergenic 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG - chr8_3:54050580-54050599 Msa1295850:intron 45.0%
! GAGTAGTCAATTGCGGATTG+CGG + chr8_3:54050616-54050635 None:intergenic 45.0%
CCAAGGAATTCTGCAACCTA+AGG + chr8_3:54051815-54051834 None:intergenic 45.0%
! CCTTAGGTTGCAGAATTCCT+TGG - chr8_3:54051812-54051831 Msa1295850:CDS 45.0%
CTCATGTGTCCAATCATGCT+TGG - chr8_3:54051841-54051860 Msa1295850:CDS 45.0%
CTTCTTCATCTCCAACCCAT+GGG + chr8_3:54051883-54051902 None:intergenic 45.0%
TCTTCTTCATCTCCAACCCA+TGG + chr8_3:54051884-54051903 None:intergenic 45.0%
AACTCCAAGGGGAAGGAATT+GGG - chr8_3:54051930-54051949 Msa1295850:CDS 45.0%
ACTTGTTCTCAAGAGCAACG+AGG - chr8_3:54052027-54052046 Msa1295850:CDS 45.0%
CTCAAGAGCAACGAGGAAAA+AGG - chr8_3:54052034-54052053 Msa1295850:CDS 45.0%
TAATAGCGCAAACTCGTCAG+CGG + chr8_3:54052326-54052345 None:intergenic 45.0%
CTGACGAGTTTGCGCTATTA+TGG - chr8_3:54052326-54052345 Msa1295850:five_prime_UTR 45.0%
!! ACGTGATAACGGGACACAAT+CGG + chr8_3:54052391-54052410 None:intergenic 45.0%
AATGCAGCTGACGTGATAAC+GGG + chr8_3:54052401-54052420 None:intergenic 45.0%
TATCACGTCAGCTGCATTTC+CGG - chr8_3:54052403-54052422 Msa1295850:five_prime_UTR 45.0%
ATTGGTTACAACACGGATGC+AGG - chr8_3:54052527-54052546 Msa1295850:five_prime_UTR 45.0%
TTGTTGATCCTCCAAAGGCA+AGG + chr8_3:54052602-54052621 None:intergenic 45.0%
!!! AAAGAGCTTTTGAGGTCTGG+TGG - chr8_3:54052683-54052702 Msa1295850:intron 45.0%
CATCGTCGAACTATCTGACA+CGG + chr8_3:54052752-54052771 None:intergenic 45.0%
!!! AAATTTCTAAATTTATTTTA+GGG - chr8_3:54049920-54049939 Msa1295850:intron 5.0%
CCTTCAGGGGTAACAGCTAT+TGG + chr8_3:54048514-54048533 None:intergenic 50.0%
CCAATAGCTGTTACCCCTGA+AGG - chr8_3:54048511-54048530 Msa1295850:CDS 50.0%
! CTGTTACCCCTGAAGGGTTT+TGG - chr8_3:54048518-54048537 Msa1295850:CDS 50.0%
GGACAACACCAAAACCCTTC+AGG + chr8_3:54048529-54048548 None:intergenic 50.0%
! GGTTGTGGTGGTGATGAAGA+AGG + chr8_3:54048610-54048629 None:intergenic 50.0%
!! CTAGTTTTCGGTTGCGGTTG+TGG + chr8_3:54048625-54048644 None:intergenic 50.0%
TGCACCTGCACCATCTAGAT+TGG - chr8_3:54048693-54048712 Msa1295850:CDS 50.0%
TGAAACCATGCCGAGAAAGG+TGG - chr8_3:54048810-54048829 Msa1295850:CDS 50.0%
CGCTACGACAATTAGCGTAG+CGG + chr8_3:54049763-54049782 None:intergenic 50.0%
CGCTACGCTAATTGTCGTAG+CGG - chr8_3:54049761-54049780 Msa1295850:intron 50.0%
! TCTATAGTGGCATAGCGGAG+CGG - chr8_3:54049813-54049832 Msa1295850:intron 50.0%
AGTGTCCTGCAGATTCAGCA+GGG + chr8_3:54051386-54051405 None:intergenic 50.0%
AAGTGTCCTGCAGATTCAGC+AGG + chr8_3:54051387-54051406 None:intergenic 50.0%
AGTATTTGGAGGCTGTCCCA+TGG - chr8_3:54051864-54051883 Msa1295850:CDS 50.0%
GTATTTGGAGGCTGTCCCAT+GGG - chr8_3:54051865-54051884 Msa1295850:CDS 50.0%
GTACTACAACTCCAAGGGGA+AGG - chr8_3:54051923-54051942 Msa1295850:CDS 50.0%
CAACTCCAAGGGGAAGGAAT+TGG - chr8_3:54051929-54051948 Msa1295850:CDS 50.0%
ACTCCAAGGGGAAGGAATTG+GGG - chr8_3:54051931-54051950 Msa1295850:CDS 50.0%
CATGTCATTACAGCTGTCGG+TGG + chr8_3:54052131-54052150 None:intergenic 50.0%
GCTATTATGGGCAAACCAGC+AGG - chr8_3:54052339-54052358 Msa1295850:five_prime_UTR 50.0%
GTAAGACAGCTAACTCCTGC+TGG + chr8_3:54052357-54052376 None:intergenic 50.0%
ACGGATGCAGGTCGTTTGAT+AGG - chr8_3:54052539-54052558 Msa1295850:five_prime_UTR 50.0%
GACGATTCTCACCTTGCCTT+TGG - chr8_3:54052588-54052607 Msa1295850:five_prime_UTR 50.0%
GATTCTCACCTTGCCTTTGG+AGG - chr8_3:54052591-54052610 Msa1295850:five_prime_UTR 50.0%
GGTGGCGCAGAACATTCATT+AGG - chr8_3:54052701-54052720 Msa1295850:intron 50.0%
! GTTTTCGGTTGCGGTTGTGG+TGG + chr8_3:54048622-54048641 None:intergenic 55.0%
GAAAAAGCCGGTTGCAGTGC+AGG - chr8_3:54048651-54048670 Msa1295850:CDS 55.0%
TCAGTCACCTGCACTGCAAC+CGG + chr8_3:54048661-54048680 None:intergenic 55.0%
GTGCAGGTGACTGAGAGAAG+AGG - chr8_3:54048667-54048686 Msa1295850:CDS 55.0%
AATGGCCACCTTTCTCGGCA+TGG + chr8_3:54048818-54048837 None:intergenic 55.0%
CGCTAATTGTCGTAGCGGTG+TGG - chr8_3:54049766-54049785 Msa1295850:intron 55.0%
AGCGGTGTGGAACGAGATAG+CGG - chr8_3:54049779-54049798 Msa1295850:intron 55.0%
GGCCGCTTCAGCTTCTATAG+TGG - chr8_3:54049800-54049819 Msa1295850:intron 55.0%
! TGGCATAGCGGAGCGGATAA+CGG - chr8_3:54049820-54049839 Msa1295850:intron 55.0%
GGACACATGAGCTGAAGCCA+AGG + chr8_3:54051832-54051851 None:intergenic 55.0%
TGACCCCAATTCCTTCCCCT+TGG + chr8_3:54051937-54051956 None:intergenic 55.0%
GCAACGAGGAAAAAGGTCGC+CGG - chr8_3:54052041-54052060 Msa1295850:CDS 55.0%
CAACGAGGAAAAAGGTCGCC+GGG - chr8_3:54052042-54052061 Msa1295850:CDS 55.0%
! TGCCGATAGCGGCGCTATAG+CGG - chr8_3:54049712-54049731 Msa1295850:intron 60.0%
! TCTCGGATAGCGGTGCGTAG+AGG + chr8_3:54050283-54050302 None:intergenic 60.0%
! TTGCGGATTGCGGTGCGTAG+CGG + chr8_3:54050606-54050625 None:intergenic 60.0%
GGAGACCCTGCTGAATCTGC+AGG - chr8_3:54051378-54051397 Msa1295850:intron 60.0%
TTGGAGGCTGTCCCATGGGT+TGG - chr8_3:54051869-54051888 Msa1295850:CDS 60.0%
TCGGTGGAACGCGCGTAACT+TGG + chr8_3:54052115-54052134 None:intergenic 60.0%
GGCCGCTATAGCGCCGCTAT+CGG + chr8_3:54049717-54049736 None:intergenic 65.0%
AGCGGCCGCGCGTAGCGTAG+CGG - chr8_3:54049730-54049749 Msa1295850:intron 75.0%
CGTCGCCGCTACGCTACGCG+CGG + chr8_3:54049738-54049757 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 54047701 54053069 54047701 ID=Msa1295850;Name=Msa1295850
chr8_3 mRNA 54047701 54053069 54047701 ID=Msa1295850-mRNA-1;Parent=Msa1295850;Name=Msa1295850-mRNA-1;_AED=0.01;_eAED=0.01;_QI=493|1|1|1|0.5|0.33|3|280|542
chr8_3 exon 54047701 54048952 54047701 ID=Msa1295850-mRNA-1:exon:15588;Parent=Msa1295850-mRNA-1
chr8_3 exon 54051660 54052610 54051660 ID=Msa1295850-mRNA-1:exon:15587;Parent=Msa1295850-mRNA-1
chr8_3 exon 54052871 54053069 54052871 ID=Msa1295850-mRNA-1:exon:15586;Parent=Msa1295850-mRNA-1
chr8_3 five_prime_UTR 54052871 54053069 54052871 ID=Msa1295850-mRNA-1:five_prime_utr;Parent=Msa1295850-mRNA-1
chr8_3 five_prime_UTR 54052317 54052610 54052317 ID=Msa1295850-mRNA-1:five_prime_utr;Parent=Msa1295850-mRNA-1
chr8_3 CDS 54051660 54052316 54051660 ID=Msa1295850-mRNA-1:cds;Parent=Msa1295850-mRNA-1
chr8_3 CDS 54047981 54048952 54047981 ID=Msa1295850-mRNA-1:cds;Parent=Msa1295850-mRNA-1
chr8_3 three_prime_UTR 54047701 54047980 54047701 ID=Msa1295850-mRNA-1:three_prime_utr;Parent=Msa1295850-mRNA-1
Gene Sequence

>Msa1295850

ATGGGTGATGTTAGGCTTAATAGGGTGGATCAAGGACAAGCCAAGATTAGGAATGTTCCAATAGCTGTTACCCCTGAAGGGTTTTGGTGTTGTCCTTCACCTGTTGTGTTTCAGAAAAGCCATAAGCCTCAGAATCCTTTGAATAAAACCAAACCTTCTTCATCACCACCACAACCGCAACCGAAAACTAGTGTTCAGAAAAAGCCGGTTGCAGTGCAGGTGACTGAGAGAAGAGGTTCTGCACCTGCACCATCTAGATTGGTGATTTCTGATGATCAACAATGTAGTATTGGTGTAGAAAGGTCTTTAGCCGGAACATCTTTAGCTGCTGAGAGAGTATCTTCTAGACCGAAAATTGAAACCATGCCGAGAAAGGTGGCCATTGAGTTTGGTGAATCTGGAACTTGTGATATGAAGGTGGTTTTATTAGGGAAGCAAGGGTTTTCTGTTAAGTTGAGTGTGCATAGGGATGTTCTGACAGAGAAGAGTAGTTTCTTTTCTAAAAAGATTTCGGAGCAACCAGATCTGTCTTGTCTTCAAATCGGTGATTGTGAGGATGTTGAAATATATGTTGAAACTGTTGGTTTGATGTACTGCAAGGAAATGAAACAGCGGCTTATGAAACAGAATGTTTCTCGCATTCTTCGAATTCTTAAGGTTGCAGAATTCCTTGGCTTCAGCTCATGTGTCCAATCATGCTTGGAGTATTTGGAGGCTGTCCCATGGGTTGGAGATGAAGAAGAAGAAAAAGTGGTCTCAACTGTACTACAACTCCAAGGGGAAGGAATTGGGGTCAACCCTGTGTTGAAACGAATTTCTTCTGACGTTTCCAATGTCCCAAAAGACACACTTTCCCACATTATCGAACTTGTTCTCAAGAGCAACGAGGAAAAAGGTCGCCGGGAGATGAAATCGATAGTTCTAAAGCTCCTCAGAGAGAACAATAGTCTTCCAAGTTACGCGCGTTCCACCGACAGCTGTAATGACATGATATATAGATCATGCAGAAGCTGCTTAGATTCATTACTGTCTCTCTTCAAGCAGGCTGCAGAACCAACCTTTGCAGATAAACCAAGCGATGAAAGAGATTCTGTAGCAAAGCATATAGCTCTTGAAGCTGATAACCTTTCGTGGTTGCTTGATATTTTAGTTGACAAACAAGCCGCTGACGAGTTTGCGCTATTATGGGCAAACCAGCAGGAGTTAGCTGTCTTACATGCAAAGCTGCCGATTGTGTCCCGTTATCACGTCAGCTGCATTTCCGGAAAACTATATGTCGGTATTGGTAGAGGGGAGTTGTTGCCATTGAAAGATACGCGGCAATTGTTGTTGCAAACATGGCTGCAGCCTCTAATGAGTGACTACAATTGGTTACAACACGGATGCAGGTCGTTTGATAGGAAACTTGTAGAGGAAGGAATTGGAAGGACGATTCTCACCTTGCCTTTGGAGGATCAACAAAGTATTTTGCTTTCTTGGGTTGGAAGTTTCTTGAAAACTGGAGATAGCTGTCCTAATCTTCAAAGAGCTTTTGAGGTCTGGTGGCGCAGAACATTCATTAGGCCATATGTCGAAAATCAAGGTAATACCGTGTCAGATAGTTCGACGATGTCAAAGAAGGATGAATGA
Protein sequence

>Msa1295850

MGDVRLNRVDQGQAKIRNVPIAVTPEGFWCCPSPVVFQKSHKPQNPLNKTKPSSSPPQPQPKTSVQKKPVAVQVTERRGSAPAPSRLVISDDQQCSIGVERSLAGTSLAAERVSSRPKIETMPRKVAIEFGESGTCDMKVVLLGKQGFSVKLSVHRDVLTEKSSFFSKKISEQPDLSCLQIGDCEDVEIYVETVGLMYCKEMKQRLMKQNVSRILRILKVAEFLGFSSCVQSCLEYLEAVPWVGDEEEEKVVSTVLQLQGEGIGVNPVLKRISSDVSNVPKDTLSHIIELVLKSNEEKGRREMKSIVLKLLRENNSLPSYARSTDSCNDMIYRSCRSCLDSLLSLFKQAAEPTFADKPSDERDSVAKHIALEADNLSWLLDILVDKQAADEFALLWANQQELAVLHAKLPIVSRYHVSCISGKLYVGIGRGELLPLKDTRQLLLQTWLQPLMSDYNWLQHGCRSFDRKLVEEGIGRTILTLPLEDQQSILLSWVGSFLKTGDSCPNLQRAFEVWWRRTFIRPYVENQGNTVSDSSTMSKKDE*