AlfalfaGEDB | Msa1308770

M. sativa cultivar zhongmu-4 / Msa1308770

KEGG: K14137
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234
PFAM: PF01239.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308770	XP_024629162.1	88.584	438	50	0	1	438	1	438	0.0	771

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308770	sp\|A3KPW7\|PTAR1_DANRE	32.900	231	112	7	143	334	93	319	4.20e-25	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308770	A0A072TJX1	83.441	465	50	1	1	438	1	465	0.0	758

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0079070	Msa1308770	0.807404	5.139594e-50	-8.615850e-47
Msa0090570	Msa1308770	0.806899	6.572669e-50	-8.615850e-47
Msa0127800	Msa1308770	0.809138	2.194532e-50	-8.615850e-47
Msa0309770	Msa1308770	0.812950	3.275684e-51	-8.615850e-47
Msa0464680	Msa1308770	0.806095	9.713581e-50	-8.615850e-47
Msa0661650	Msa1308770	0.802259	6.105816e-49	-8.615850e-47
Msa0693010	Msa1308770	-0.809939	1.476527e-50	-8.615850e-47
Msa0897330	Msa1308770	0.807345	5.289270e-50	-8.615850e-47
Msa1104090	Msa1308770	0.816394	5.657442e-52	-8.615850e-47
Msa1113170	Msa1308770	0.805272	1.445909e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308770	MtrunA17_Chr8g0335281	83.226	465	51	1	1	438	1	465	0.0	756

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1308770	AT1G10095.1	48.655	446	194	7	1	438	1	419	8.01e-133	389
Msa1308770	AT1G10095.2	50.118	425	177	8	1	416	1	399	1.01e-131	386
Msa1308770	AT1G10095.3	51.515	330	127	5	1	323	1	304	1.47e-105	315
Msa1308770	AT1G10095.4	51.368	329	127	5	1	322	1	303	5.04e-105	314

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Find 97 sgRNAs with CRISPR-Local

Find 455 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATTTATCCAGCACG+TGG	0.606857	8_4:-5128108	None:intergenic
AAAGCGTTATGTCGGGAGAG+AGG	0.643432	8_4:+5127435	Msa1308770:CDS
AAAGTATAGTTTCTCTTGTT+TGG	0.245840	8_4:-5123425	None:intergenic
AAATGAAGAATCTGGCATTT+CGG	0.372365	8_4:+5123339	Msa1308770:CDS
AACAAGAGAAACTATACTTT+TGG	0.306893	8_4:+5123428	Msa1308770:CDS
AAGTCAAGGAGCAGGAGTTT+CGG	0.461495	8_4:+5128550	Msa1308770:three_prime_UTR
AATGAAGAGTCTAATTCTTA+TGG	0.301067	8_4:+5122248	Msa1308770:CDS
AATTCTTATGGAAATGCTAC+GGG	0.531467	8_4:+5122260	Msa1308770:CDS
ACATAATTCATTCTGCAGAA+AGG	0.585680	8_4:-5128198	None:intergenic
ACATTGATAAAGCGTTATGT+CGG	0.558116	8_4:+5127427	Msa1308770:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAAAACTGAACACAGAT+CGG	-	chr8_4:5121106-5121125	None:intergenic	30.0%
GCAATTTATCAAACAGGTAA+TGG	-	chr8_4:5121139-5121158	None:intergenic	30.0%
GAATTGGCAATTTATCAAAC+AGG	-	chr8_4:5121145-5121164	None:intergenic	30.0%
TAAATGATGATTTGAGCTTC+CGG	+	chr8_4:5121294-5121313	Msa1308770:intron	30.0%
GTAATTCTTTGATCGGAAAA+TGG	+	chr8_4:5121397-5121416	Msa1308770:intron	30.0%
AATTCTTTGATCGGAAAATG+GGG	+	chr8_4:5121399-5121418	Msa1308770:intron	30.0%
GTTATTGAGTATAAGTAACG+TGG	+	chr8_4:5121598-5121617	Msa1308770:intron	30.0%
ACTAATCAAAGCATACAGAA+TGG	-	chr8_4:5121672-5121691	None:intergenic	30.0%
TTCTGTATGCTTTGATTAGT+TGG	+	chr8_4:5121672-5121691	Msa1308770:intron	30.0%
AAATAAACTCATGAGTAACG+AGG	-	chr8_4:5121924-5121943	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	5120940	5128915	5120940	ID=Msa1308770;Name=Msa1308770
chr8_4	mRNA	5120940	5128915	5120940	ID=Msa1308770-mRNA-1;Parent=Msa1308770;Name=Msa1308770-mRNA-1;_AED=0.21;_eAED=0.21;_QI=135\|1\|1\|1\|0.9\|0.81\|11\|395\|438
chr8_4	exon	5120940	5121038	5120940	ID=Msa1308770-mRNA-1:exon:1572;Parent=Msa1308770-mRNA-1
chr8_4	exon	5122209	5122327	5122209	ID=Msa1308770-mRNA-1:exon:1573;Parent=Msa1308770-mRNA-1
chr8_4	exon	5123297	5123686	5123297	ID=Msa1308770-mRNA-1:exon:1574;Parent=Msa1308770-mRNA-1
chr8_4	exon	5124554	5124664	5124554	ID=Msa1308770-mRNA-1:exon:1575;Parent=Msa1308770-mRNA-1
chr8_4	exon	5124966	5125056	5124966	ID=Msa1308770-mRNA-1:exon:1576;Parent=Msa1308770-mRNA-1
chr8_4	exon	5125448	5125516	5125448	ID=Msa1308770-mRNA-1:exon:1577;Parent=Msa1308770-mRNA-1
chr8_4	exon	5126300	5126377	5126300	ID=Msa1308770-mRNA-1:exon:1578;Parent=Msa1308770-mRNA-1
chr8_4	exon	5126528	5126617	5126528	ID=Msa1308770-mRNA-1:exon:1579;Parent=Msa1308770-mRNA-1
chr8_4	exon	5127406	5127456	5127406	ID=Msa1308770-mRNA-1:exon:1580;Parent=Msa1308770-mRNA-1
chr8_4	exon	5128080	5128313	5128080	ID=Msa1308770-mRNA-1:exon:1581;Parent=Msa1308770-mRNA-1
chr8_4	exon	5128401	5128915	5128401	ID=Msa1308770-mRNA-1:exon:1582;Parent=Msa1308770-mRNA-1
chr8_4	five_prime_UTR	5120940	5121038	5120940	ID=Msa1308770-mRNA-1:five_prime_utr;Parent=Msa1308770-mRNA-1
chr8_4	five_prime_UTR	5122209	5122244	5122209	ID=Msa1308770-mRNA-1:five_prime_utr;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5122245	5122327	5122245	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5123297	5123686	5123297	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5124554	5124664	5124554	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5124966	5125056	5124966	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5125448	5125516	5125448	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5126300	5126377	5126300	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5126528	5126617	5126528	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5127406	5127456	5127406	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5128080	5128313	5128080	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	CDS	5128401	5128520	5128401	ID=Msa1308770-mRNA-1:cds;Parent=Msa1308770-mRNA-1
chr8_4	three_prime_UTR	5128521	5128915	5128521	ID=Msa1308770-mRNA-1:three_prime_utr;Parent=Msa1308770-mRNA-1

Gene Sequence

>Msa1308770

ATGAATGAAGAGTCTAATTCTTATGGAAATGCTACGGGTCTCTTGCATCAGCTGGAGGATATTCTCAAGTCTGATGCTCTAATTGATGAGCTGGGGTTTATTCATCCATCCCAGTTTTCATTGTTAAATGAAGAATCTGGCATTTCGGCTAATTTATCTGATGAACCCGTACATCAATCAGCAAACAGGGCAGCAAGCTCTGACAAATATTCCAAACAAGAGAAACTATACTTTTGGAACAGAGATCATAAATTGGGAATTTCAACTCATGTTCTTATACCGTTATATAGAGCTGCTAAACATGCATTTATGACGGCGTTTAAACAATACAAGATGGGTGACAATCAATCCGACAACATTGAACTTTGTTTACCTCCTTCAGTATCCCATGACCATCTTGAAAGCATACTTTTGAGACACAGCAGGTCTCTTCTACTGCTAAGCTGTGACTTTATGACTGCTTGGAATTGCAGAAAGTTATTAGTGTCTAAGAAGAAGCAGGTCTCAATGTTTGTAGATGAACTTCTACTGTCAGAACTTGTGCTCTCATGCTCACCCAAAAGTGAACAAGCTTGGAGTCATAGGCGATGGGTGATCAAGTCAATATCTGCAAACTGTTCAAATTTCAAAGAGATTTTGGGGAAAGAATCTGAGCTTGTGGAAAAAATAGCCGAGAGATCAAAGATGAATTATCGTGCTTGGAATCACCGTTGCTGGCTAATCTCATACATGACTAAAGAACAGGTGCTATCTGAGTTGAAGAAATCCAGAAGTTGGGCTGCACTGCATGTTGCTGATAATTGCTGCTTTCATTATCGCAGACGGTTACTGCAGAAAATTATGGAGGACCGAAGTAATGCGGAAGAATCTGCATCTTATGGTCATAATGCTTATATTGTCCAAGCAGTGAAGGACGAACTCGATTGGAATGAAACATTGATAAAGCGTTATGTCGGGAGAGAGGCTCTATGGCTTCATCGTCGCTTTCTTTCCACGTGCTGGATAAATAATTTTCTAACTGATACTAGTGACGGATCCGACCATTCCAAGGAGGAAGCTAGCATGTTCCATGACTTTGGCACCTTTCTGCAGAATGAATTATGTCTCCTTCACACCTCGACTTTTGCTGATGACGATTATGGGGATTTCCAAGCACAAGCCACATATTCTGCTAGTTACATACTTTGGTTGAAAGTGCAAGTGCCCAAGCCTCTTGGAAATGAACTCCTTGAGAAGATAAGAGATGTAGATTTGAAGACCTTACTGGATAAGTCATGCCCTGAGAAATTTTCTCTATTTAAATACTTTTTGAACTAG

Protein sequence

>Msa1308770

MNEESNSYGNATGLLHQLEDILKSDALIDELGFIHPSQFSLLNEESGISANLSDEPVHQSANRAASSDKYSKQEKLYFWNRDHKLGISTHVLIPLYRAAKHAFMTAFKQYKMGDNQSDNIELCLPPSVSHDHLESILLRHSRSLLLLSCDFMTAWNCRKLLVSKKKQVSMFVDELLLSELVLSCSPKSEQAWSHRRWVIKSISANCSNFKEILGKESELVEKIAERSKMNYRAWNHRCWLISYMTKEQVLSELKKSRSWAALHVADNCCFHYRRRLLQKIMEDRSNAEESASYGHNAYIVQAVKDELDWNETLIKRYVGREALWLHRRFLSTCWINNFLTDTSDGSDHSKEEASMFHDFGTFLQNELCLLHTSTFADDDYGDFQAQATYSASYILWLKVQVPKPLGNELLEKIRDVDLKTLLDKSCPEKFSLFKYFLN*