AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0897330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897330 MtrunA17_Chr2g0298841 58.192 177 10 3 39 151 54 230 5.04e-57 178
Msa0897330 MtrunA17_Chr1g0155331 57.062 177 12 3 39 151 54 230 5.58e-56 176
Msa0897330 MtrunA17_Chr4g0002321 89.157 83 9 0 69 151 147 229 4.31e-51 163
Msa0897330 MtrunA17_Chr1g0155311 94.737 57 3 0 95 151 2 58 5.77e-35 116
Msa0897330 MtrunA17_Chr7g0237701 48.980 98 45 1 68 160 149 246 4.18e-30 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897330 AT2G44120.1 85.714 84 12 0 68 151 145 228 5.42e-51 163
Msa0897330 AT2G44120.2 85.714 84 12 0 68 151 150 233 6.18e-51 163
Msa0897330 AT2G01250.1 85.714 84 12 0 68 151 145 228 1.41e-50 162
Msa0897330 AT3G13580.5 84.524 84 13 0 68 151 147 230 9.04e-50 160
Msa0897330 AT3G13580.4 84.524 84 13 0 68 151 147 230 9.04e-50 160
Msa0897330 AT3G13580.2 84.524 84 13 0 68 151 147 230 9.04e-50 160
Msa0897330 AT3G13580.3 84.524 84 13 0 68 151 147 230 9.04e-50 160
Msa0897330 AT3G13580.1 84.524 84 13 0 68 151 147 230 9.04e-50 160
Msa0897330 AT3G13580.7 84.524 84 13 0 68 151 147 230 9.04e-50 160
Msa0897330 AT3G13580.8 84.524 84 13 0 68 151 147 230 9.04e-50 160
Msa0897330 AT3G13580.6 84.524 84 13 0 68 151 147 230 9.04e-50 160
Msa0897330 AT3G13580.9 84.524 84 13 0 68 151 147 230 9.04e-50 160
Msa0897330 AT1G80750.1 45.455 99 48 2 68 160 149 247 1.20e-20 85.5

Find 36 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTATTGTGCTTGGGATT+TGG 0.274776 6_1:+89242207 Msa0897330:CDS
TTTCAAGCTCAAAGCTCCTT+TGG 0.284641 6_1:+89243294 Msa0897330:CDS
AGTGTTCAATTGCAGGTTCT+TGG 0.317764 6_1:+89243181 Msa0897330:intron
TTCAAGCTCAAAGCTCCTTT+GGG 0.329811 6_1:+89243295 Msa0897330:CDS
TTGATCTACAAGCGCGGTTA+TGG 0.337108 6_1:+89242832 Msa0897330:CDS
AGTATCATGCTTTCGTAACT+TGG 0.340764 6_1:+89242108 Msa0897330:five_prime_UTR
GGTGGTGATGCTGGTATAAC+AGG 0.362244 6_1:+89243352 Msa0897330:CDS
TCAATTCTCTAACACTCTTC+AGG 0.373375 6_1:-89242813 None:intergenic
GTGTTCAATTGCAGGTTCTT+GGG 0.403327 6_1:+89243182 Msa0897330:intron
CTTCGTATACTATTGTGCTT+GGG 0.420026 6_1:+89242201 Msa0897330:CDS
ACATCAATGAACTCATTAGA+AGG 0.462677 6_1:+89243382 Msa0897330:CDS
GCTTCGTATACTATTGTGCT+TGG 0.463624 6_1:+89242200 Msa0897330:CDS
GAAGCGTGAAGCTAAGCTTA+AGG 0.464202 6_1:+89242773 Msa0897330:CDS
AAGCGTGAAGCTAAGCTTAA+GGG 0.467088 6_1:+89242774 Msa0897330:CDS
AGATAACTCTATCATTGAAC+AGG 0.482014 6_1:+89242885 Msa0897330:CDS
AAGAGAAATCACTATGTTGA+AGG 0.489111 6_1:+89243331 Msa0897330:CDS
AAAGGAGCTTTGAGCTTGAA+AGG 0.504831 6_1:-89243292 None:intergenic
GAGAGGCAAACAACTTCCTA+TGG 0.504947 6_1:+89243269 Msa0897330:CDS
GGAATACGATGATTCGCAAA+AGG 0.507484 6_1:+89242737 Msa0897330:CDS
TATGTTGAAGGTGGTGATGC+TGG 0.512402 6_1:+89243343 Msa0897330:CDS
ATAAGCTAGAGCAGCAGCCA+AGG 0.523738 6_1:+89242230 Msa0897330:CDS
TTGCAGGTTCTTGGGAAACA+TGG 0.547799 6_1:+89243190 Msa0897330:intron
ATCCACGAGATCATGACTGT+TGG 0.549865 6_1:+89243235 Msa0897330:CDS
GCGGTTATGGAAAGGTTGAT+AGG 0.549876 6_1:+89242845 Msa0897330:CDS
TTCTTCTTCATGCCACCCAA+AGG 0.554983 6_1:-89243310 None:intergenic
CTTTGAGCTTGAAAGGCCAT+AGG 0.568033 6_1:-89243285 None:intergenic
AAGCTCAAAGCTCCTTTGGG+TGG 0.570830 6_1:+89243298 Msa0897330:CDS
ATCCAACAGTCATGATCTCG+TGG 0.585385 6_1:-89243237 None:intergenic
CTACAAGCGCGGTTATGGAA+AGG 0.599869 6_1:+89242837 Msa0897330:CDS
CGTGAAGCTAAGCTTAAGGG+TGG 0.634387 6_1:+89242777 Msa0897330:CDS
AGAAATCACTATGTTGAAGG+TGG 0.637998 6_1:+89243334 Msa0897330:CDS
GTGGTGATGCTGGTATAACA+GGG 0.670257 6_1:+89243353 Msa0897330:CDS
ACTATCATATAATAGTGACA+TGG 0.703053 6_1:+89242372 Msa0897330:intron
AGAGAATTGATCTACAAGCG+CGG 0.721136 6_1:+89242826 Msa0897330:intron
TGTTGGATCTCACTTCAGAG+AGG 0.724978 6_1:+89243252 Msa0897330:CDS
GTGATGCTGGTATAACAGGG+AGG 0.752839 6_1:+89243356 Msa0897330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGTTTTAGAATTTTAGAA+TGG + chr6_1:89242711-89242730 Msa0897330:intron 15.0%
!! GAAAAATAGAAAAATTTAAC+CGG - chr6_1:89243152-89243171 None:intergenic 15.0%
!!! AATGTTTTAGAATTTTAGAA+TGG + chr6_1:89242711-89242730 Msa0897330:intron 15.0%
!! GAAAAATAGAAAAATTTAAC+CGG - chr6_1:89243152-89243171 None:intergenic 15.0%
!!! AGTTTGAATTAACTCAATTT+TGG + chr6_1:89242263-89242282 Msa0897330:intron 20.0%
!!! TTCTTTCTTTGACTTATATA+TGG + chr6_1:89242564-89242583 Msa0897330:intron 20.0%
!!! TTTAGAATTTTAGAATGGTA+AGG + chr6_1:89242716-89242735 Msa0897330:intron 20.0%
!!! AGTTTGAATTAACTCAATTT+TGG + chr6_1:89242263-89242282 Msa0897330:intron 20.0%
!!! TTCTTTCTTTGACTTATATA+TGG + chr6_1:89242564-89242583 Msa0897330:intron 20.0%
!!! TTTAGAATTTTAGAATGGTA+AGG + chr6_1:89242716-89242735 Msa0897330:intron 20.0%
! TCAAACTTAAAATACAACCT+TGG - chr6_1:89242250-89242269 None:intergenic 25.0%
! TTAGAATACTTTCTTTCATG+TGG + chr6_1:89242289-89242308 Msa0897330:intron 25.0%
! ACTATCATATAATAGTGACA+TGG + chr6_1:89242372-89242391 Msa0897330:intron 25.0%
! CTTTCATATTTGTTCTTGTA+GGG + chr6_1:89242599-89242618 Msa0897330:intron 25.0%
!! TAATTTAAAGTACGTACTTG+TGG + chr6_1:89242630-89242649 Msa0897330:intron 25.0%
!! AATTTAAAGTACGTACTTGT+GGG + chr6_1:89242631-89242650 Msa0897330:intron 25.0%
! TGTTTATCCAATTAATAGTG+AGG + chr6_1:89242667-89242686 Msa0897330:intron 25.0%
! GTTTATCCAATTAATAGTGA+GGG + chr6_1:89242668-89242687 Msa0897330:intron 25.0%
! TCAAACTTAAAATACAACCT+TGG - chr6_1:89242250-89242269 None:intergenic 25.0%
! TTAGAATACTTTCTTTCATG+TGG + chr6_1:89242289-89242308 Msa0897330:intron 25.0%
! ACTATCATATAATAGTGACA+TGG + chr6_1:89242372-89242391 Msa0897330:intron 25.0%
! CTTTCATATTTGTTCTTGTA+GGG + chr6_1:89242599-89242618 Msa0897330:intron 25.0%
!! TAATTTAAAGTACGTACTTG+TGG + chr6_1:89242630-89242649 Msa0897330:intron 25.0%
!! AATTTAAAGTACGTACTTGT+GGG + chr6_1:89242631-89242650 Msa0897330:intron 25.0%
! TGTTTATCCAATTAATAGTG+AGG + chr6_1:89242667-89242686 Msa0897330:intron 25.0%
! GTTTATCCAATTAATAGTGA+GGG + chr6_1:89242668-89242687 Msa0897330:intron 25.0%
AATACTTTCTTTCATGTGGA+AGG + chr6_1:89242293-89242312 Msa0897330:intron 30.0%
AGTCAAAGAAAGAATCTCAT+TGG - chr6_1:89242558-89242577 None:intergenic 30.0%
GCTTTCATATTTGTTCTTGT+AGG + chr6_1:89242598-89242617 Msa0897330:intron 30.0%
AGATAACTCTATCATTGAAC+AGG + chr6_1:89242885-89242904 Msa0897330:CDS 30.0%
!! GGTGCTATTATTATTGTTGA+AGG + chr6_1:89243118-89243137 Msa0897330:intron 30.0%
AAGAGAAATCACTATGTTGA+AGG + chr6_1:89243331-89243350 Msa0897330:CDS 30.0%
ACATCAATGAACTCATTAGA+AGG + chr6_1:89243382-89243401 Msa0897330:CDS 30.0%
AATACTTTCTTTCATGTGGA+AGG + chr6_1:89242293-89242312 Msa0897330:intron 30.0%
AGTCAAAGAAAGAATCTCAT+TGG - chr6_1:89242558-89242577 None:intergenic 30.0%
GCTTTCATATTTGTTCTTGT+AGG + chr6_1:89242598-89242617 Msa0897330:intron 30.0%
AGATAACTCTATCATTGAAC+AGG + chr6_1:89242885-89242904 Msa0897330:CDS 30.0%
!! GGTGCTATTATTATTGTTGA+AGG + chr6_1:89243118-89243137 Msa0897330:intron 30.0%
AAGAGAAATCACTATGTTGA+AGG + chr6_1:89243331-89243350 Msa0897330:CDS 30.0%
ACATCAATGAACTCATTAGA+AGG + chr6_1:89243382-89243401 Msa0897330:CDS 30.0%
AGTATCATGCTTTCGTAACT+TGG + chr6_1:89242108-89242127 Msa0897330:five_prime_UTR 35.0%
CTTCGTATACTATTGTGCTT+GGG + chr6_1:89242201-89242220 Msa0897330:CDS 35.0%
ATACTATTGTGCTTGGGATT+TGG + chr6_1:89242207-89242226 Msa0897330:CDS 35.0%
ATACATGCTAGCATTCTAGT+AGG + chr6_1:89242320-89242339 Msa0897330:intron 35.0%
TGACATGGTTTATGCATCTA+CGG + chr6_1:89242387-89242406 Msa0897330:intron 35.0%
!!! TCTTTGAAACATCCTTTTCC+AGG + chr6_1:89242501-89242520 Msa0897330:intron 35.0%
!!! CTTTGAAACATCCTTTTCCA+GGG + chr6_1:89242502-89242521 Msa0897330:intron 35.0%
GTGATAACTACATCCAATGA+GGG - chr6_1:89242531-89242550 None:intergenic 35.0%
TGTGATAACTACATCCAATG+AGG - chr6_1:89242532-89242551 None:intergenic 35.0%
ATCCAATTAATAGTGAGGGA+TGG + chr6_1:89242672-89242691 Msa0897330:intron 35.0%
TACCATCCCTCACTATTAAT+TGG - chr6_1:89242677-89242696 None:intergenic 35.0%
TCAATTCTCTAACACTCTTC+AGG - chr6_1:89242816-89242835 None:intergenic 35.0%
TCTGAACTGTATGACATAGA+TGG + chr6_1:89242958-89242977 Msa0897330:intron 35.0%
CTGAACTGTATGACATAGAT+GGG + chr6_1:89242959-89242978 Msa0897330:intron 35.0%
AATTGGGTAAAGTACAGAGT+CGG - chr6_1:89242998-89243017 None:intergenic 35.0%
CATTCTGACTTTGGCAAATT+GGG - chr6_1:89243014-89243033 None:intergenic 35.0%
ACATTCTGACTTTGGCAAAT+TGG - chr6_1:89243015-89243034 None:intergenic 35.0%
AACAACTCACATTCTGACTT+TGG - chr6_1:89243023-89243042 None:intergenic 35.0%
AATAATAGCACCACCATACA+GGG - chr6_1:89243110-89243129 None:intergenic 35.0%
TAATAATAGCACCACCATAC+AGG - chr6_1:89243111-89243130 None:intergenic 35.0%
ATTGTTGAAGGTTATGTTGC+CGG + chr6_1:89243130-89243149 Msa0897330:intron 35.0%
AGAAATCACTATGTTGAAGG+TGG + chr6_1:89243334-89243353 Msa0897330:CDS 35.0%
AGTATCATGCTTTCGTAACT+TGG + chr6_1:89242108-89242127 Msa0897330:five_prime_UTR 35.0%
CTTCGTATACTATTGTGCTT+GGG + chr6_1:89242201-89242220 Msa0897330:CDS 35.0%
ATACTATTGTGCTTGGGATT+TGG + chr6_1:89242207-89242226 Msa0897330:CDS 35.0%
ATACATGCTAGCATTCTAGT+AGG + chr6_1:89242320-89242339 Msa0897330:intron 35.0%
TGACATGGTTTATGCATCTA+CGG + chr6_1:89242387-89242406 Msa0897330:intron 35.0%
!!! TCTTTGAAACATCCTTTTCC+AGG + chr6_1:89242501-89242520 Msa0897330:intron 35.0%
!!! CTTTGAAACATCCTTTTCCA+GGG + chr6_1:89242502-89242521 Msa0897330:intron 35.0%
GTGATAACTACATCCAATGA+GGG - chr6_1:89242531-89242550 None:intergenic 35.0%
TGTGATAACTACATCCAATG+AGG - chr6_1:89242532-89242551 None:intergenic 35.0%
ATCCAATTAATAGTGAGGGA+TGG + chr6_1:89242672-89242691 Msa0897330:intron 35.0%
TACCATCCCTCACTATTAAT+TGG - chr6_1:89242677-89242696 None:intergenic 35.0%
TCAATTCTCTAACACTCTTC+AGG - chr6_1:89242816-89242835 None:intergenic 35.0%
TCTGAACTGTATGACATAGA+TGG + chr6_1:89242958-89242977 Msa0897330:intron 35.0%
CTGAACTGTATGACATAGAT+GGG + chr6_1:89242959-89242978 Msa0897330:intron 35.0%
AATTGGGTAAAGTACAGAGT+CGG - chr6_1:89242998-89243017 None:intergenic 35.0%
CATTCTGACTTTGGCAAATT+GGG - chr6_1:89243014-89243033 None:intergenic 35.0%
ACATTCTGACTTTGGCAAAT+TGG - chr6_1:89243015-89243034 None:intergenic 35.0%
AACAACTCACATTCTGACTT+TGG - chr6_1:89243023-89243042 None:intergenic 35.0%
AATAATAGCACCACCATACA+GGG - chr6_1:89243110-89243129 None:intergenic 35.0%
TAATAATAGCACCACCATAC+AGG - chr6_1:89243111-89243130 None:intergenic 35.0%
ATTGTTGAAGGTTATGTTGC+CGG + chr6_1:89243130-89243149 Msa0897330:intron 35.0%
AGAAATCACTATGTTGAAGG+TGG + chr6_1:89243334-89243353 Msa0897330:CDS 35.0%
GCTTCGTATACTATTGTGCT+TGG + chr6_1:89242200-89242219 Msa0897330:CDS 40.0%
GAGAAAGCTGAGAAAGAACA+TGG + chr6_1:89242446-89242465 Msa0897330:intron 40.0%
AAGCTGAGAAAGAACATGGT+TGG + chr6_1:89242450-89242469 Msa0897330:intron 40.0%
GGAATACGATGATTCGCAAA+AGG + chr6_1:89242737-89242756 Msa0897330:CDS 40.0%
AAGCGTGAAGCTAAGCTTAA+GGG + chr6_1:89242774-89242793 Msa0897330:CDS 40.0%
AGAGAATTGATCTACAAGCG+CGG + chr6_1:89242826-89242845 Msa0897330:intron 40.0%
TGTGTGATCGAATGAAAGCA+GGG - chr6_1:89242930-89242949 None:intergenic 40.0%
ATAATAGCACCACCATACAG+GGG - chr6_1:89243109-89243128 None:intergenic 40.0%
CTGACATAGTGTTCAATTGC+AGG + chr6_1:89243174-89243193 Msa0897330:intron 40.0%
AGTGTTCAATTGCAGGTTCT+TGG + chr6_1:89243181-89243200 Msa0897330:intron 40.0%
GTGTTCAATTGCAGGTTCTT+GGG + chr6_1:89243182-89243201 Msa0897330:intron 40.0%
!! AAAGGAGCTTTGAGCTTGAA+AGG - chr6_1:89243295-89243314 None:intergenic 40.0%
TTTCAAGCTCAAAGCTCCTT+TGG + chr6_1:89243294-89243313 Msa0897330:CDS 40.0%
TTCAAGCTCAAAGCTCCTTT+GGG + chr6_1:89243295-89243314 Msa0897330:CDS 40.0%
GCTTCGTATACTATTGTGCT+TGG + chr6_1:89242200-89242219 Msa0897330:CDS 40.0%
GAGAAAGCTGAGAAAGAACA+TGG + chr6_1:89242446-89242465 Msa0897330:intron 40.0%
AAGCTGAGAAAGAACATGGT+TGG + chr6_1:89242450-89242469 Msa0897330:intron 40.0%
GGAATACGATGATTCGCAAA+AGG + chr6_1:89242737-89242756 Msa0897330:CDS 40.0%
AAGCGTGAAGCTAAGCTTAA+GGG + chr6_1:89242774-89242793 Msa0897330:CDS 40.0%
AGAGAATTGATCTACAAGCG+CGG + chr6_1:89242826-89242845 Msa0897330:intron 40.0%
TGTGTGATCGAATGAAAGCA+GGG - chr6_1:89242930-89242949 None:intergenic 40.0%
ATAATAGCACCACCATACAG+GGG - chr6_1:89243109-89243128 None:intergenic 40.0%
CTGACATAGTGTTCAATTGC+AGG + chr6_1:89243174-89243193 Msa0897330:intron 40.0%
AGTGTTCAATTGCAGGTTCT+TGG + chr6_1:89243181-89243200 Msa0897330:intron 40.0%
GTGTTCAATTGCAGGTTCTT+GGG + chr6_1:89243182-89243201 Msa0897330:intron 40.0%
!! AAAGGAGCTTTGAGCTTGAA+AGG - chr6_1:89243295-89243314 None:intergenic 40.0%
TTTCAAGCTCAAAGCTCCTT+TGG + chr6_1:89243294-89243313 Msa0897330:CDS 40.0%
TTCAAGCTCAAAGCTCCTTT+GGG + chr6_1:89243295-89243314 Msa0897330:CDS 40.0%
CATGGTTTATGCATCTACGG+AGG + chr6_1:89242390-89242409 Msa0897330:intron 45.0%
TTTATGCATCTACGGAGGTC+AGG + chr6_1:89242395-89242414 Msa0897330:intron 45.0%
AATGAGGGATTCCCTGGAAA+AGG - chr6_1:89242516-89242535 None:intergenic 45.0%
! TTTTCCAGGGAATCCCTCAT+TGG + chr6_1:89242515-89242534 Msa0897330:intron 45.0%
GAAGCGTGAAGCTAAGCTTA+AGG + chr6_1:89242773-89242792 Msa0897330:CDS 45.0%
TTGATCTACAAGCGCGGTTA+TGG + chr6_1:89242832-89242851 Msa0897330:CDS 45.0%
! GCGGTTATGGAAAGGTTGAT+AGG + chr6_1:89242845-89242864 Msa0897330:CDS 45.0%
CTGTGTGATCGAATGAAAGC+AGG - chr6_1:89242931-89242950 None:intergenic 45.0%
TTGCAGGTTCTTGGGAAACA+TGG + chr6_1:89243190-89243209 Msa0897330:intron 45.0%
ATCCACGAGATCATGACTGT+TGG + chr6_1:89243235-89243254 Msa0897330:CDS 45.0%
ATCCAACAGTCATGATCTCG+TGG - chr6_1:89243240-89243259 None:intergenic 45.0%
TGTTGGATCTCACTTCAGAG+AGG + chr6_1:89243252-89243271 Msa0897330:CDS 45.0%
GAGAGGCAAACAACTTCCTA+TGG + chr6_1:89243269-89243288 Msa0897330:CDS 45.0%
CTTTGAGCTTGAAAGGCCAT+AGG - chr6_1:89243288-89243307 None:intergenic 45.0%
TTCTTCTTCATGCCACCCAA+AGG - chr6_1:89243313-89243332 None:intergenic 45.0%
! TATGTTGAAGGTGGTGATGC+TGG + chr6_1:89243343-89243362 Msa0897330:CDS 45.0%
! GTGGTGATGCTGGTATAACA+GGG + chr6_1:89243353-89243372 Msa0897330:CDS 45.0%
CATGGTTTATGCATCTACGG+AGG + chr6_1:89242390-89242409 Msa0897330:intron 45.0%
TTTATGCATCTACGGAGGTC+AGG + chr6_1:89242395-89242414 Msa0897330:intron 45.0%
AATGAGGGATTCCCTGGAAA+AGG - chr6_1:89242516-89242535 None:intergenic 45.0%
! TTTTCCAGGGAATCCCTCAT+TGG + chr6_1:89242515-89242534 Msa0897330:intron 45.0%
GAAGCGTGAAGCTAAGCTTA+AGG + chr6_1:89242773-89242792 Msa0897330:CDS 45.0%
TTGATCTACAAGCGCGGTTA+TGG + chr6_1:89242832-89242851 Msa0897330:CDS 45.0%
! GCGGTTATGGAAAGGTTGAT+AGG + chr6_1:89242845-89242864 Msa0897330:CDS 45.0%
CTGTGTGATCGAATGAAAGC+AGG - chr6_1:89242931-89242950 None:intergenic 45.0%
TTGCAGGTTCTTGGGAAACA+TGG + chr6_1:89243190-89243209 Msa0897330:intron 45.0%
ATCCACGAGATCATGACTGT+TGG + chr6_1:89243235-89243254 Msa0897330:CDS 45.0%
ATCCAACAGTCATGATCTCG+TGG - chr6_1:89243240-89243259 None:intergenic 45.0%
TGTTGGATCTCACTTCAGAG+AGG + chr6_1:89243252-89243271 Msa0897330:CDS 45.0%
GAGAGGCAAACAACTTCCTA+TGG + chr6_1:89243269-89243288 Msa0897330:CDS 45.0%
CTTTGAGCTTGAAAGGCCAT+AGG - chr6_1:89243288-89243307 None:intergenic 45.0%
TTCTTCTTCATGCCACCCAA+AGG - chr6_1:89243313-89243332 None:intergenic 45.0%
! TATGTTGAAGGTGGTGATGC+TGG + chr6_1:89243343-89243362 Msa0897330:CDS 45.0%
! GTGGTGATGCTGGTATAACA+GGG + chr6_1:89243353-89243372 Msa0897330:CDS 45.0%
ATAAGCTAGAGCAGCAGCCA+AGG + chr6_1:89242230-89242249 Msa0897330:CDS 50.0%
ACATCCAATGAGGGATTCCC+TGG - chr6_1:89242522-89242541 None:intergenic 50.0%
CGTGAAGCTAAGCTTAAGGG+TGG + chr6_1:89242777-89242796 Msa0897330:CDS 50.0%
CTACAAGCGCGGTTATGGAA+AGG + chr6_1:89242837-89242856 Msa0897330:CDS 50.0%
CTTGACCAATGTCCCCTGTA+TGG + chr6_1:89243094-89243113 Msa0897330:intron 50.0%
AAGCTCAAAGCTCCTTTGGG+TGG + chr6_1:89243298-89243317 Msa0897330:CDS 50.0%
! GGTGGTGATGCTGGTATAAC+AGG + chr6_1:89243352-89243371 Msa0897330:CDS 50.0%
GTGATGCTGGTATAACAGGG+AGG + chr6_1:89243356-89243375 Msa0897330:CDS 50.0%
ATAAGCTAGAGCAGCAGCCA+AGG + chr6_1:89242230-89242249 Msa0897330:CDS 50.0%
ACATCCAATGAGGGATTCCC+TGG - chr6_1:89242522-89242541 None:intergenic 50.0%
CGTGAAGCTAAGCTTAAGGG+TGG + chr6_1:89242777-89242796 Msa0897330:CDS 50.0%
CTACAAGCGCGGTTATGGAA+AGG + chr6_1:89242837-89242856 Msa0897330:CDS 50.0%
CTTGACCAATGTCCCCTGTA+TGG + chr6_1:89243094-89243113 Msa0897330:intron 50.0%
AAGCTCAAAGCTCCTTTGGG+TGG + chr6_1:89243298-89243317 Msa0897330:CDS 50.0%
! GGTGGTGATGCTGGTATAAC+AGG + chr6_1:89243352-89243371 Msa0897330:CDS 50.0%
GTGATGCTGGTATAACAGGG+AGG + chr6_1:89243356-89243375 Msa0897330:CDS 50.0%
GACCAATGTCCCCTGTATGG+TGG + chr6_1:89243097-89243116 Msa0897330:intron 55.0%
CACCACCATACAGGGGACAT+TGG - chr6_1:89243102-89243121 None:intergenic 55.0%
GACCAATGTCCCCTGTATGG+TGG + chr6_1:89243097-89243116 Msa0897330:intron 55.0%
CACCACCATACAGGGGACAT+TGG - chr6_1:89243102-89243121 None:intergenic 55.0%
GCATCTACGGAGGTCAGGAG+AGG + chr6_1:89242400-89242419 Msa0897330:intron 60.0%
GAGGTCAGGAGAGGCTACAG+AGG + chr6_1:89242409-89242428 Msa0897330:intron 60.0%
GCATCTACGGAGGTCAGGAG+AGG + chr6_1:89242400-89242419 Msa0897330:intron 60.0%
GAGGTCAGGAGAGGCTACAG+AGG + chr6_1:89242409-89242428 Msa0897330:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 89242103 89243405 89242103 ID=Msa0897330;Name=Msa0897330
chr6_1 mRNA 89242103 89243405 89242103 ID=Msa0897330-mRNA-1;Parent=Msa0897330;Name=Msa0897330-mRNA-1;_AED=0.18;_eAED=0.24;_QI=45|0.25|0.2|1|0.25|0.2|5|0|164
chr6_1 exon 89242103 89242251 89242103 ID=Msa0897330-mRNA-1:exon:15089;Parent=Msa0897330-mRNA-1
chr6_1 exon 89242387 89242393 89242387 ID=Msa0897330-mRNA-1:exon:15090;Parent=Msa0897330-mRNA-1
chr6_1 exon 89242729 89242820 89242729 ID=Msa0897330-mRNA-1:exon:15091;Parent=Msa0897330-mRNA-1
chr6_1 exon 89242828 89242906 89242828 ID=Msa0897330-mRNA-1:exon:15092;Parent=Msa0897330-mRNA-1
chr6_1 exon 89243196 89243405 89243196 ID=Msa0897330-mRNA-1:exon:15093;Parent=Msa0897330-mRNA-1
chr6_1 five_prime_UTR 89242103 89242147 89242103 ID=Msa0897330-mRNA-1:five_prime_utr;Parent=Msa0897330-mRNA-1
chr6_1 CDS 89242148 89242251 89242148 ID=Msa0897330-mRNA-1:cds;Parent=Msa0897330-mRNA-1
chr6_1 CDS 89242387 89242393 89242387 ID=Msa0897330-mRNA-1:cds;Parent=Msa0897330-mRNA-1
chr6_1 CDS 89242729 89242820 89242729 ID=Msa0897330-mRNA-1:cds;Parent=Msa0897330-mRNA-1
chr6_1 CDS 89242828 89242906 89242828 ID=Msa0897330-mRNA-1:cds;Parent=Msa0897330-mRNA-1
chr6_1 CDS 89243196 89243405 89243196 ID=Msa0897330-mRNA-1:cds;Parent=Msa0897330-mRNA-1
Gene Sequence

>Msa0897330

ATGCTTAATGATCGTGTTCGCACTTGTAGAGTCTTAAAACATCGCAGAATCAGCTTCGTATACTATTGTGCTTGGGATTTGGATAAGCTAGAGCAGCAGCCAAGTGACATGAATGGTAAGGAATACGATGATTCGCAAAAGGAGTTGATTGCGTTGAAGCGTGAAGCTAAGCTTAAGGGTGGATTTTATGTTGATCCTGAAGAAGAATTGATCTACAAGCGCGGTTATGGAAAGGTTGATAGGCAAAGAATTGCTTTGACAGATAACTCTATCATTGAACAGGTTCTTGGGAAACATGGTATCATTTGCATTGAAGATCTCATCCACGAGATCATGACTGTTGGATCTCACTTCAGAGAGGCAAACAACTTCCTATGGCCTTTCAAGCTCAAAGCTCCTTTGGGTGGCATGAAGAAGAAGAGAAATCACTATGTTGAAGGTGGTGATGCTGGTATAACAGGGAGGATTACATCAATGAACTCATTAGAAGGA

Protein sequence

>Msa0897330

MLNDRVRTCRVLKHRRISFVYYCAWDLDKLEQQPSDMNGKEYDDSQKELIALKREAKLKGGFYVDPEEELIYKRGYGKVDRQRIALTDNSIIEQVLGKHGIICIEDLIHEIMTVGSHFREANNFLWPFKLKAPLGGMKKKRNHYVEGGDAGITGRITSMNSLEG