AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0079070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079070 MtrunA17_Chr1g0191241 98.653 297 4 0 1 297 1 297 0.0 597
Msa0079070 MtrunA17_Chr4g0061391 61.977 263 98 1 37 297 24 286 2.71e-109 318
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0079070 AT3G05010.1 68.493 292 88 1 6 297 13 300 1.60e-149 421
Msa0079070 AT5G27210.1 70.370 270 80 0 28 297 28 297 1.97e-140 398

Find 77 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCACCTAAATTTAGAATT+AGG 0.096517 1_2:+56788247 Msa0079070:five_prime_UTR
TTGTCCTTGTTTACTTCTTC+TGG 0.137493 1_2:+56789359 Msa0079070:CDS
TTCTTCTGGAATGCTGTTTC+TGG 0.158996 1_2:+56789373 Msa0079070:CDS
AAAACCCTAATTCTAAATTT+AGG 0.221899 1_2:-56788252 None:intergenic
TCGCTTGTATATCCTATTTC+GGG 0.232882 1_2:+56790392 Msa0079070:three_prime_UTR
CTCGTGCTCACCGTTGTTTA+TGG 0.242634 1_2:+56789681 Msa0079070:CDS
TATTGTTCATGTATCATTCT+AGG 0.242876 1_2:+56789709 Msa0079070:CDS
ACTGGAAACGGCGCTGGTTT+TGG 0.246426 1_2:+56789907 Msa0079070:CDS
ACTGCTGTATATTACATTTC+TGG 0.250927 1_2:+56790068 Msa0079070:CDS
CTATATATCTATTTGCATTT+GGG 0.257819 1_2:+56789589 Msa0079070:CDS
TTGTTTGCTTGCGGGCTTAC+TGG 0.258766 1_2:+56789889 Msa0079070:CDS
CCATTTGTGCGAGAAATTCT+TGG 0.258968 1_2:-56788298 None:intergenic
TTCACCTAAATTTAGAATTA+GGG 0.270715 1_2:+56788248 Msa0079070:five_prime_UTR
ATCGCTTGTATATCCTATTT+CGG 0.271322 1_2:+56790391 Msa0079070:three_prime_UTR
TCTAAATTTAGGTGAAGAAT+TGG 0.276391 1_2:-56788241 None:intergenic
CAATTGCATTGTTTGCTTGC+GGG 0.288884 1_2:+56789881 Msa0079070:CDS
GCTATATATCTATTTGCATT+TGG 0.295526 1_2:+56789588 Msa0079070:CDS
ACAAAAGAATTACCTTTAAC+AGG 0.300915 1_2:-56789499 None:intergenic
TCGTGCTCACCGTTGTTTAT+GGG 0.323009 1_2:+56789682 Msa0079070:CDS
ATACAGCAGTGGAAGATAAA+AGG 0.326151 1_2:-56790055 None:intergenic
TGGAATCGATGGAGAAAATA+AGG 0.331613 1_2:-56788221 None:intergenic
CAGGCATGGGAGTGCACTCC+TGG 0.335049 1_2:+56789314 Msa0079070:intron
TTGATTATTCACGACGACTA+TGG 0.343314 1_2:-56788064 None:intergenic
GTTTCTGGAAGTGAGCTTGC+TGG 0.348925 1_2:+56789388 Msa0079070:CDS
GAAGATTCTTCTTCTTCTAC+TGG 0.367957 1_2:+56788350 Msa0079070:CDS
TTTCGTATTATGCTTCTCTT+TGG 0.381366 1_2:+56788531 Msa0079070:CDS
GAAGCATTGACACGAACTTT+TGG 0.389803 1_2:+56789446 Msa0079070:CDS
GGTATATCCGGTATCATTGT+TGG 0.395818 1_2:+56789467 Msa0079070:CDS
GTCCTCTATATACTAATTGC+AGG 0.397111 1_2:+56790321 Msa0079070:three_prime_UTR
CCAAGAATTTCTCGCACAAA+TGG 0.414360 1_2:+56788298 Msa0079070:exon
GAGGAGAGTAGAATTTACTA+TGG 0.436023 1_2:-56787963 None:intergenic
TCGCTTGAAGTGGAACTTGT+GGG 0.460605 1_2:+56789647 Msa0079070:CDS
TAACAAAGGGATTCACCGAT+TGG 0.465604 1_2:+56788378 Msa0079070:CDS
TACTCTGAAATGAAAGATGC+TGG 0.469422 1_2:+56790242 Msa0079070:CDS
AACAAAGGGATTCACCGATT+GGG 0.473818 1_2:+56788379 Msa0079070:CDS
GATCAGTGTCGATGAACAAC+GGG 0.476434 1_2:-56789614 None:intergenic
GGGCTTACTGGAAACGGCGC+TGG 0.478494 1_2:+56789901 Msa0079070:CDS
GATGTTGAAGAGATTAGTTA+CGG 0.484170 1_2:-56788180 None:intergenic
GCTTGCGGGCTTACTGGAAA+CGG 0.488027 1_2:+56789895 Msa0079070:CDS
TTCCATGTTAGCTCTTTCCC+AGG 0.494192 1_2:-56789332 None:intergenic
TTAGCATTCTCAATCTCGCT+TGG 0.494748 1_2:+56788558 Msa0079070:CDS
ATCAAAACCAACAATGATAC+CGG 0.504747 1_2:-56789474 None:intergenic
GCAATTGCATTGTTTGCTTG+CGG 0.512576 1_2:+56789880 Msa0079070:CDS
CTCGCTTGAAGTGGAACTTG+TGG 0.521442 1_2:+56789646 Msa0079070:CDS
TATATATCTATTTGCATTTG+GGG 0.524806 1_2:+56789590 Msa0079070:CDS
AGGTGAAGAATTGGAATCGA+TGG 0.533879 1_2:-56788232 None:intergenic
TTGTTCATCGACACTGATCA+TGG 0.535592 1_2:+56789618 Msa0079070:CDS
CAACGGTGAGCACGAGCTTG+TGG 0.536256 1_2:-56789674 None:intergenic
ATAAAGCAATCAAACACTAC+AGG 0.537807 1_2:-56790446 None:intergenic
CTCCTGGGAAAGAGCTAACA+TGG 0.539196 1_2:+56789330 Msa0079070:CDS
GTCCTGCAATTAGTATATAG+AGG 0.539923 1_2:-56790323 None:intergenic
ATCATTCTAGGTGGAGAGAA+AGG 0.546944 1_2:+56789721 Msa0079070:CDS
TATAAAAGATAAAATAGCAA+TGG 0.552291 1_2:-56787987 None:intergenic
ATGGTACTCCTCGCTTGAAG+TGG 0.567386 1_2:+56789637 Msa0079070:CDS
AAGATAAAATAGCAATGGAG+AGG 0.575276 1_2:-56787982 None:intergenic
TATCAGATTACGACCACCGC+AGG 0.577710 1_2:+56790466 Msa0079070:three_prime_UTR
CTTCAGGGAAATAATGCAAG+TGG 0.588641 1_2:+56789419 Msa0079070:CDS
GTGACACTCGAAAACCCAAT+CGG 0.591095 1_2:-56788393 None:intergenic
AGGTGGAGAGAAAGGTTACC+CGG 0.604674 1_2:+56789729 Msa0079070:CDS
AGGCATGGGAGTGCACTCCT+GGG 0.610220 1_2:+56789315 Msa0079070:intron
ATCGGTGCTATCAATAACAA+AGG 0.618733 1_2:+56788328 Msa0079070:CDS
AAAATAAATGTAACCTGCGG+TGG 0.618858 1_2:-56790479 None:intergenic
CATTCCAGAAGAAGTAAACA+AGG 0.620907 1_2:-56789363 None:intergenic
CACAAGTTCCACTTCAAGCG+AGG 0.621744 1_2:-56789645 None:intergenic
TATGATATAAGAGCGACCAT+TGG 0.623291 1_2:-56788507 None:intergenic
TGATCAGTGTCGATGAACAA+CGG 0.625959 1_2:-56789615 None:intergenic
ATAACATACTTGTAAAACGC+AGG 0.629597 1_2:-56789838 None:intergenic
CGCTTGTATATCCTATTTCG+GGG 0.629906 1_2:+56790393 Msa0079070:three_prime_UTR
GCAGTGGAAGATAAAAGGCA+TGG 0.634056 1_2:-56790050 None:intergenic
AAGCAATCAAACACTACAGG+AGG 0.642728 1_2:-56790443 None:intergenic
TGTTCATGTATCATTCTAGG+TGG 0.650713 1_2:+56789712 Msa0079070:CDS
AGAAATGTAATATACAGCAG+TGG 0.653445 1_2:-56790066 None:intergenic
TAGAATTTACTATGGACAGA+CGG 0.654445 1_2:-56787955 None:intergenic
ACGACGACTATGGTTAAAGT+CGG 0.673621 1_2:-56788054 None:intergenic
GAATCAGACTGGGAGTGACG+TGG 0.679586 1_2:+56790272 Msa0079070:exon
CAATATGAGCCCATAAACAA+CGG 0.679882 1_2:-56789691 None:intergenic
TCTAAAATAAATGTAACCTG+CGG 0.697665 1_2:-56790482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAAGATAAAATAGCAA+TGG - chr1_2:56787990-56788009 None:intergenic 15.0%
!!! TGATTGATTTTGATTATGTT+TGG - chr1_2:56788118-56788137 None:intergenic 20.0%
!!! TTCACCTAAATTTAGAATTA+GGG + chr1_2:56788248-56788267 Msa0079070:five_prime_UTR 20.0%
!! AAAACCCTAATTCTAAATTT+AGG - chr1_2:56788255-56788274 None:intergenic 20.0%
!!! CTTGTTTCATTTTTATTTCA+AGG + chr1_2:56788609-56788628 Msa0079070:intron 20.0%
!! AATTAAGCTGTTTATCTAAA+TGG + chr1_2:56788717-56788736 Msa0079070:intron 20.0%
!! CTATATATCTATTTGCATTT+GGG + chr1_2:56789589-56789608 Msa0079070:CDS 20.0%
!! TATATATCTATTTGCATTTG+GGG + chr1_2:56789590-56789609 Msa0079070:CDS 20.0%
!!! ATGTTTGGTTTGTTTTTCTT+GGG - chr1_2:56788103-56788122 None:intergenic 25.0%
!!! TATGTTTGGTTTGTTTTTCT+TGG - chr1_2:56788104-56788123 None:intergenic 25.0%
! TCTAAATTTAGGTGAAGAAT+TGG - chr1_2:56788244-56788263 None:intergenic 25.0%
!! CTTCACCTAAATTTAGAATT+AGG + chr1_2:56788247-56788266 Msa0079070:five_prime_UTR 25.0%
!! TTTTCTCTTCGTTTTGTATT+TGG + chr1_2:56788451-56788470 Msa0079070:CDS 25.0%
!! TTATCTAAATGGACTTAGTT+AGG + chr1_2:56788728-56788747 Msa0079070:intron 25.0%
!! TATCTAAATGGACTTAGTTA+GGG + chr1_2:56788729-56788748 Msa0079070:intron 25.0%
! AATAAGCTGAAAACATCTTA+TGG - chr1_2:56788847-56788866 None:intergenic 25.0%
!! TAGATTTTCATAAGCTATCT+TGG - chr1_2:56788882-56788901 None:intergenic 25.0%
! AAGATAGCTTATGAAAATCT+AGG + chr1_2:56788881-56788900 Msa0079070:intron 25.0%
! TTAGAGAACATATGTTCTTA+TGG + chr1_2:56789052-56789071 Msa0079070:intron 25.0%
!! ATTGAGTTGTATATCTAAAC+AGG + chr1_2:56789117-56789136 Msa0079070:intron 25.0%
!! TTGAGTTGTATATCTAAACA+GGG + chr1_2:56789118-56789137 Msa0079070:intron 25.0%
! ACAAAAGAATTACCTTTAAC+AGG - chr1_2:56789502-56789521 None:intergenic 25.0%
! GCTATATATCTATTTGCATT+TGG + chr1_2:56789588-56789607 Msa0079070:CDS 25.0%
! TATTGTTCATGTATCATTCT+AGG + chr1_2:56789709-56789728 Msa0079070:CDS 25.0%
!!! TAGTTCTGAACTTTATTCTT+TGG + chr1_2:56789963-56789982 Msa0079070:intron 25.0%
! ATTGTTCTTCTTTGTATTAC+AGG + chr1_2:56790190-56790209 Msa0079070:intron 25.0%
!! TCTAAAATAAATGTAACCTG+CGG - chr1_2:56790485-56790504 None:intergenic 25.0%
TAGAATTTACTATGGACAGA+CGG - chr1_2:56787958-56787977 None:intergenic 30.0%
AAGATAAAATAGCAATGGAG+AGG - chr1_2:56787985-56788004 None:intergenic 30.0%
! GATGTTGAAGAGATTAGTTA+CGG - chr1_2:56788183-56788202 None:intergenic 30.0%
!! ATTCTTGGTTTTTGGGAAAA+GGG - chr1_2:56788286-56788305 None:intergenic 30.0%
!! AATTCTTGGTTTTTGGGAAA+AGG - chr1_2:56788287-56788306 None:intergenic 30.0%
!! TTCTACTGGAGTTTTAACAA+AGG + chr1_2:56788364-56788383 Msa0079070:CDS 30.0%
!! TCTACTGGAGTTTTAACAAA+GGG + chr1_2:56788365-56788384 Msa0079070:CDS 30.0%
TTTCGTATTATGCTTCTCTT+TGG + chr1_2:56788531-56788550 Msa0079070:CDS 30.0%
AGAAAGAAAGAATGAAACCT+GGG - chr1_2:56788591-56788610 None:intergenic 30.0%
AAGAAAGAAAGAATGAAACC+TGG - chr1_2:56788592-56788611 None:intergenic 30.0%
TATACAATGACATAAGCATG+AGG + chr1_2:56788778-56788797 Msa0079070:intron 30.0%
! TTATATCCTTTTTCTCCCTT+TGG + chr1_2:56789268-56789287 Msa0079070:intron 30.0%
ATTTGTTCTGGTGATAATTC+AGG + chr1_2:56789295-56789314 Msa0079070:intron 30.0%
ATCAAAACCAACAATGATAC+CGG - chr1_2:56789477-56789496 None:intergenic 30.0%
! CTGGTTATGTATGATTAGTT+TGG + chr1_2:56789550-56789569 Msa0079070:intron 30.0%
AATCCCTACAATTAACTTAC+CGG - chr1_2:56789751-56789770 None:intergenic 30.0%
ATAACATACTTGTAAAACGC+AGG - chr1_2:56789841-56789860 None:intergenic 30.0%
AGAAATGTAATATACAGCAG+TGG - chr1_2:56790069-56790088 None:intergenic 30.0%
ACTGCTGTATATTACATTTC+TGG + chr1_2:56790068-56790087 Msa0079070:CDS 30.0%
TTACAATGCGCTTTACTTTA+TGG + chr1_2:56790106-56790125 Msa0079070:intron 30.0%
ATGCAGTATTGTTTGTAGTT+TGG + chr1_2:56790156-56790175 Msa0079070:intron 30.0%
ATCGCTTGTATATCCTATTT+CGG + chr1_2:56790391-56790410 Msa0079070:three_prime_UTR 30.0%
!!! TTTTTTTTCTTCCCCGAAAT+AGG - chr1_2:56790407-56790426 None:intergenic 30.0%
ATAAAGCAATCAAACACTAC+AGG - chr1_2:56790449-56790468 None:intergenic 30.0%
GAGGAGAGTAGAATTTACTA+TGG - chr1_2:56787966-56787985 None:intergenic 35.0%
TTGATTATTCACGACGACTA+TGG - chr1_2:56788067-56788086 None:intergenic 35.0%
! TGTTTTTCTTGGGTGAGTTT+TGG - chr1_2:56788093-56788112 None:intergenic 35.0%
TGGAATCGATGGAGAAAATA+AGG - chr1_2:56788224-56788243 None:intergenic 35.0%
!! GCGAGAAATTCTTGGTTTTT+GGG - chr1_2:56788293-56788312 None:intergenic 35.0%
!! TGCGAGAAATTCTTGGTTTT+TGG - chr1_2:56788294-56788313 None:intergenic 35.0%
CGCACAAATGGTTGAAAAAT+CGG + chr1_2:56788310-56788329 Msa0079070:exon 35.0%
!! ATCGGTGCTATCAATAACAA+AGG + chr1_2:56788328-56788347 Msa0079070:CDS 35.0%
GAAGATTCTTCTTCTTCTAC+TGG + chr1_2:56788350-56788369 Msa0079070:CDS 35.0%
! AGCTTTTACAAACTCACCAA+TGG + chr1_2:56788491-56788510 Msa0079070:CDS 35.0%
TATGATATAAGAGCGACCAT+TGG - chr1_2:56788510-56788529 None:intergenic 35.0%
AAAATCTAGGTAGTCAATCC+CGG + chr1_2:56788894-56788913 Msa0079070:intron 35.0%
AACTAGAATAGCAGCAACTA+AGG - chr1_2:56789144-56789163 None:intergenic 35.0%
ATTCAACCAAAGGGAGAAAA+AGG - chr1_2:56789277-56789296 None:intergenic 35.0%
CCAGAACAAATTCAACCAAA+GGG - chr1_2:56789286-56789305 None:intergenic 35.0%
ACCAGAACAAATTCAACCAA+AGG - chr1_2:56789287-56789306 None:intergenic 35.0%
! TTGTCCTTGTTTACTTCTTC+TGG + chr1_2:56789359-56789378 Msa0079070:CDS 35.0%
CATTCCAGAAGAAGTAAACA+AGG - chr1_2:56789366-56789385 None:intergenic 35.0%
!!! TTGCTGGCTTTTTTACTTCA+GGG + chr1_2:56789404-56789423 Msa0079070:CDS 35.0%
! ACACGAACTTTTGGTATATC+CGG + chr1_2:56789455-56789474 Msa0079070:CDS 35.0%
!!! TGGTTTTGATGTCCTGTTAA+AGG + chr1_2:56789487-56789506 Msa0079070:CDS 35.0%
ATATTTCATTGTCCTTGTGC+TGG + chr1_2:56789531-56789550 Msa0079070:intron 35.0%
AATCATACATAACCAGCACA+AGG - chr1_2:56789546-56789565 None:intergenic 35.0%
! AGTTTGGCGTTTTCTTTGTT+AGG + chr1_2:56789566-56789585 Msa0079070:intron 35.0%
CAATATGAGCCCATAAACAA+CGG - chr1_2:56789694-56789713 None:intergenic 35.0%
TGTTCATGTATCATTCTAGG+TGG + chr1_2:56789712-56789731 Msa0079070:CDS 35.0%
TTACCCGGTAAGTTAATTGT+AGG + chr1_2:56789744-56789763 Msa0079070:intron 35.0%
TACCCGGTAAGTTAATTGTA+GGG + chr1_2:56789745-56789764 Msa0079070:intron 35.0%
ATCCCTACAATTAACTTACC+GGG - chr1_2:56789750-56789769 None:intergenic 35.0%
CTGTGTTTACTTTATCTCAC+AGG + chr1_2:56790001-56790020 Msa0079070:intron 35.0%
ATACAGCAGTGGAAGATAAA+AGG - chr1_2:56790058-56790077 None:intergenic 35.0%
!!! ATTTCTGGCAGACTTTTTTC+AGG + chr1_2:56790083-56790102 Msa0079070:CDS 35.0%
ACAAAGAAGAACAATCAGTC+AGG - chr1_2:56790185-56790204 None:intergenic 35.0%
GTTCTTCTTTGTATTACAGG+AGG + chr1_2:56790193-56790212 Msa0079070:intron 35.0%
!! TACTCTGAAATGAAAGATGC+TGG + chr1_2:56790242-56790261 Msa0079070:CDS 35.0%
!!! TGGTTTTTTCGAATCAGACT+GGG + chr1_2:56790262-56790281 Msa0079070:CDS 35.0%
GTCCTCTATATACTAATTGC+AGG + chr1_2:56790321-56790340 Msa0079070:three_prime_UTR 35.0%
GTCCTGCAATTAGTATATAG+AGG - chr1_2:56790326-56790345 None:intergenic 35.0%
TCGCTTGTATATCCTATTTC+GGG + chr1_2:56790392-56790411 Msa0079070:three_prime_UTR 35.0%
AAAATAAATGTAACCTGCGG+TGG - chr1_2:56790482-56790501 None:intergenic 35.0%
ACGACGACTATGGTTAAAGT+CGG - chr1_2:56788057-56788076 None:intergenic 40.0%
AGGTGAAGAATTGGAATCGA+TGG - chr1_2:56788235-56788254 None:intergenic 40.0%
CCATTTGTGCGAGAAATTCT+TGG - chr1_2:56788301-56788320 None:intergenic 40.0%
CCAAGAATTTCTCGCACAAA+TGG + chr1_2:56788298-56788317 Msa0079070:exon 40.0%
TAACAAAGGGATTCACCGAT+TGG + chr1_2:56788378-56788397 Msa0079070:CDS 40.0%
! AACAAAGGGATTCACCGATT+GGG + chr1_2:56788379-56788398 Msa0079070:CDS 40.0%
TTAGCATTCTCAATCTCGCT+TGG + chr1_2:56788558-56788577 Msa0079070:CDS 40.0%
ACATAAGCATGAGGCTGTTT+GGG + chr1_2:56788787-56788806 Msa0079070:intron 40.0%
! CCCTTTGGTTGAATTTGTTC+TGG + chr1_2:56789283-56789302 Msa0079070:intron 40.0%
TTCTGGTGATAATTCAGGCA+TGG + chr1_2:56789300-56789319 Msa0079070:intron 40.0%
TCTGGTGATAATTCAGGCAT+GGG + chr1_2:56789301-56789320 Msa0079070:intron 40.0%
!! TTCTTCTGGAATGCTGTTTC+TGG + chr1_2:56789373-56789392 Msa0079070:CDS 40.0%
!!! CTTGCTGGCTTTTTTACTTC+AGG + chr1_2:56789403-56789422 Msa0079070:CDS 40.0%
CTTCAGGGAAATAATGCAAG+TGG + chr1_2:56789419-56789438 Msa0079070:CDS 40.0%
!!! GAAGCATTGACACGAACTTT+TGG + chr1_2:56789446-56789465 Msa0079070:CDS 40.0%
GGTATATCCGGTATCATTGT+TGG + chr1_2:56789467-56789486 Msa0079070:CDS 40.0%
!! TGATCAGTGTCGATGAACAA+CGG - chr1_2:56789618-56789637 None:intergenic 40.0%
TTGTTCATCGACACTGATCA+TGG + chr1_2:56789618-56789637 Msa0079070:CDS 40.0%
ATCATTCTAGGTGGAGAGAA+AGG + chr1_2:56789721-56789740 Msa0079070:CDS 40.0%
GCAATTGCATTGTTTGCTTG+CGG + chr1_2:56789880-56789899 Msa0079070:CDS 40.0%
CAATTGCATTGTTTGCTTGC+GGG + chr1_2:56789881-56789900 Msa0079070:CDS 40.0%
! ACAGGAGGAAGATTTTCACA+TGG + chr1_2:56790208-56790227 Msa0079070:intron 40.0%
!!! CTGGTTTTTTCGAATCAGAC+TGG + chr1_2:56790261-56790280 Msa0079070:CDS 40.0%
CGCTTGTATATCCTATTTCG+GGG + chr1_2:56790393-56790412 Msa0079070:three_prime_UTR 40.0%
AAGCAATCAAACACTACAGG+AGG - chr1_2:56790446-56790465 None:intergenic 40.0%
GTGACACTCGAAAACCCAAT+CGG - chr1_2:56788396-56788415 None:intergenic 45.0%
!!! GATTGGGTTTTCGAGTGTCA+CGG + chr1_2:56788395-56788414 Msa0079070:CDS 45.0%
!!! ATTGGGTTTTCGAGTGTCAC+GGG + chr1_2:56788396-56788415 Msa0079070:CDS 45.0%
!!! TTTTCGAGTGTCACGGGTTT+TGG + chr1_2:56788402-56788421 Msa0079070:CDS 45.0%
GGACTTAGTTAGGGTCTGTT+TGG + chr1_2:56788738-56788757 Msa0079070:intron 45.0%
GACATAAGCATGAGGCTGTT+TGG + chr1_2:56788786-56788805 Msa0079070:intron 45.0%
CATAAGCATGAGGCTGTTTG+GGG + chr1_2:56788788-56788807 Msa0079070:intron 45.0%
ATAAGCATGAGGCTGTTTGG+GGG + chr1_2:56788789-56788808 Msa0079070:intron 45.0%
!! ATCCCGTTATCCCACTTTTG+GGG - chr1_2:56788931-56788950 None:intergenic 45.0%
!! GATCCCGTTATCCCACTTTT+GGG - chr1_2:56788932-56788951 None:intergenic 45.0%
AATCCATCCTTTGCAATCCC+CGG - chr1_2:56788971-56788990 None:intergenic 45.0%
! TTCCATGTTAGCTCTTTCCC+AGG - chr1_2:56789335-56789354 None:intergenic 45.0%
!! GATCAGTGTCGATGAACAAC+GGG - chr1_2:56789617-56789636 None:intergenic 45.0%
TCGCTTGAAGTGGAACTTGT+GGG + chr1_2:56789647-56789666 Msa0079070:CDS 45.0%
TCGTGCTCACCGTTGTTTAT+GGG + chr1_2:56789682-56789701 Msa0079070:CDS 45.0%
GCAGTGGAAGATAAAAGGCA+TGG - chr1_2:56790053-56790072 None:intergenic 45.0%
AGGCTGTTTGGGGGAACTTA+TGG + chr1_2:56788798-56788817 Msa0079070:intron 50.0%
AGGTAGTCAATCCCGGATAG+CGG + chr1_2:56788901-56788920 Msa0079070:intron 50.0%
CGACCCCAAAAGTGGGATAA+CGG + chr1_2:56788925-56788944 Msa0079070:intron 50.0%
GACCCCAAAAGTGGGATAAC+GGG + chr1_2:56788926-56788945 Msa0079070:intron 50.0%
! GGATCCCGTTATCCCACTTT+TGG - chr1_2:56788933-56788952 None:intergenic 50.0%
! ATAACGGGATCCCAGTTAGC+AGG + chr1_2:56788941-56788960 Msa0079070:intron 50.0%
ATCCCAGTTAGCAGGATCAC+CGG + chr1_2:56788949-56788968 Msa0079070:intron 50.0%
CTCCTGGGAAAGAGCTAACA+TGG + chr1_2:56789330-56789349 Msa0079070:CDS 50.0%
! GTTTCTGGAAGTGAGCTTGC+TGG + chr1_2:56789388-56789407 Msa0079070:CDS 50.0%
ATGGTACTCCTCGCTTGAAG+TGG + chr1_2:56789637-56789656 Msa0079070:CDS 50.0%
CACAAGTTCCACTTCAAGCG+AGG - chr1_2:56789648-56789667 None:intergenic 50.0%
CTCGCTTGAAGTGGAACTTG+TGG + chr1_2:56789646-56789665 Msa0079070:CDS 50.0%
CTCGTGCTCACCGTTGTTTA+TGG + chr1_2:56789681-56789700 Msa0079070:CDS 50.0%
AGGTGGAGAGAAAGGTTACC+CGG + chr1_2:56789729-56789748 Msa0079070:CDS 50.0%
TTGTTTGCTTGCGGGCTTAC+TGG + chr1_2:56789889-56789908 Msa0079070:CDS 50.0%
TATCAGATTACGACCACCGC+AGG + chr1_2:56790466-56790485 Msa0079070:three_prime_UTR 50.0%
!!! TCTCGCTTGGTGCTTTTCCC+AGG + chr1_2:56788571-56788590 Msa0079070:CDS 55.0%
!!! TTTTGGGGTCGACCGCTATC+CGG - chr1_2:56788916-56788935 None:intergenic 55.0%
ATAGCGGTCGACCCCAAAAG+TGG + chr1_2:56788917-56788936 Msa0079070:intron 55.0%
TAGCGGTCGACCCCAAAAGT+GGG + chr1_2:56788918-56788937 Msa0079070:intron 55.0%
TCCCAGTTAGCAGGATCACC+GGG + chr1_2:56788950-56788969 Msa0079070:intron 55.0%
AGGATCACCGGGGATTGCAA+AGG + chr1_2:56788961-56788980 Msa0079070:intron 55.0%
TCACCGGGGATTGCAAAGGA+TGG + chr1_2:56788965-56788984 Msa0079070:intron 55.0%
AACGCAGGTCTTGCTGCAGA+AGG - chr1_2:56789826-56789845 None:intergenic 55.0%
GCTTGCGGGCTTACTGGAAA+CGG + chr1_2:56789895-56789914 Msa0079070:CDS 55.0%
!!! ACTGGAAACGGCGCTGGTTT+TGG + chr1_2:56789907-56789926 Msa0079070:CDS 55.0%
!!! ACGGCGCTGGTTTTGGTTTC+TGG + chr1_2:56789914-56789933 Msa0079070:CDS 55.0%
GAATCAGACTGGGAGTGACG+TGG + chr1_2:56790272-56790291 Msa0079070:exon 55.0%
! TTTGGGGTCGACCGCTATCC+GGG - chr1_2:56788915-56788934 None:intergenic 60.0%
CCCCGGTGATCCTGCTAACT+GGG - chr1_2:56788954-56788973 None:intergenic 60.0%
CCCAGTTAGCAGGATCACCG+GGG + chr1_2:56788951-56788970 Msa0079070:intron 60.0%
TCCCCGGTGATCCTGCTAAC+TGG - chr1_2:56788955-56788974 None:intergenic 60.0%
! AGGCATGGGAGTGCACTCCT+GGG + chr1_2:56789315-56789334 Msa0079070:intron 60.0%
CAACGGTGAGCACGAGCTTG+TGG - chr1_2:56789677-56789696 None:intergenic 60.0%
! CAGGCATGGGAGTGCACTCC+TGG + chr1_2:56789314-56789333 Msa0079070:intron 65.0%
GGGCTTACTGGAAACGGCGC+TGG + chr1_2:56789901-56789920 Msa0079070:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 56787949 56790525 56787949 ID=Msa0079070;Name=Msa0079070
chr1_2 mRNA 56787949 56790525 56787949 ID=Msa0079070-mRNA-1;Parent=Msa0079070;Name=Msa0079070-mRNA-1;_AED=0.05;_eAED=0.05;_QI=368|1|1|1|1|1|6|236|297
chr1_2 exon 56787949 56788592 56787949 ID=Msa0079070-mRNA-1:exon:17864;Parent=Msa0079070-mRNA-1
chr1_2 exon 56789317 56789508 56789317 ID=Msa0079070-mRNA-1:exon:17865;Parent=Msa0079070-mRNA-1
chr1_2 exon 56789588 56789750 56789588 ID=Msa0079070-mRNA-1:exon:17866;Parent=Msa0079070-mRNA-1
chr1_2 exon 56789833 56789935 56789833 ID=Msa0079070-mRNA-1:exon:17867;Parent=Msa0079070-mRNA-1
chr1_2 exon 56790023 56790104 56790023 ID=Msa0079070-mRNA-1:exon:17868;Parent=Msa0079070-mRNA-1
chr1_2 exon 56790212 56790525 56790212 ID=Msa0079070-mRNA-1:exon:17869;Parent=Msa0079070-mRNA-1
chr1_2 five_prime_UTR 56787949 56788316 56787949 ID=Msa0079070-mRNA-1:five_prime_utr;Parent=Msa0079070-mRNA-1
chr1_2 CDS 56788317 56788592 56788317 ID=Msa0079070-mRNA-1:cds;Parent=Msa0079070-mRNA-1
chr1_2 CDS 56789317 56789508 56789317 ID=Msa0079070-mRNA-1:cds;Parent=Msa0079070-mRNA-1
chr1_2 CDS 56789588 56789750 56789588 ID=Msa0079070-mRNA-1:cds;Parent=Msa0079070-mRNA-1
chr1_2 CDS 56789833 56789935 56789833 ID=Msa0079070-mRNA-1:cds;Parent=Msa0079070-mRNA-1
chr1_2 CDS 56790023 56790104 56790023 ID=Msa0079070-mRNA-1:cds;Parent=Msa0079070-mRNA-1
chr1_2 CDS 56790212 56790289 56790212 ID=Msa0079070-mRNA-1:cds;Parent=Msa0079070-mRNA-1
chr1_2 three_prime_UTR 56790290 56790525 56790290 ID=Msa0079070-mRNA-1:three_prime_utr;Parent=Msa0079070-mRNA-1
Gene Sequence

>Msa0079070

ATGGTTGAAAAATCGGTGCTATCAATAACAAAGGAAGATTCTTCTTCTTCTACTGGAGTTTTAACAAAGGGATTCACCGATTGGGTTTTCGAGTGTCACGGGTTTTGGCACAATGCTGTTTTAATAATCGCTTCTTTTCTCTTCGTTTTGTATTTGGCTTTTCAAGCGAAGAAGAGCTTTTACAAACTCACCAATGGTCGCTCTTATATCATAATTTCGTATTATGCTTCTCTTTGGCTTGTTAGCATTCTCAATCTCGCTTGGTGCTTTTCCCAGGCATGGGAGTGCACTCCTGGGAAAGAGCTAACATGGAACTTGTTGTCCTTGTTTACTTCTTCTGGAATGCTGTTTCTGGAAGTGAGCTTGCTGGCTTTTTTACTTCAGGGAAATAATGCAAGTGGTGTAGAAGCATTGACACGAACTTTTGGTATATCCGGTATCATTGTTGGTTTTGATGTCCTGTTAAAGGCTATATATCTATTTGCATTTGGGGTCCCGTTGTTCATCGACACTGATCATGGTACTCCTCGCTTGAAGTGGAACTTGTGGGTTATCCACAAGCTCGTGCTCACCGTTGTTTATGGGCTCATATTGTTCATGTATCATTCTAGGTGGAGAGAAAGGTTACCCGCAAGACCTGCGTTTTACAAGTATGTTATTATCATGTTCATCTTGAATGCAATTGCATTGTTTGCTTGCGGGCTTACTGGAAACGGCGCTGGTTTTGGTTTCTGGTTTTATCATGTCACTATTGTGTGTTACCATGCCTTTTATCTTCCACTGCTGTATATTACATTTCTGGCAGACTTTTTTCAGGAGGAAGATTTTCACATGGAGAATGTGTATTACTCTGAAATGAAAGATGCTGGTTTTTTCGAATCAGACTGGGAGTGA

Protein sequence

>Msa0079070

MVEKSVLSITKEDSSSSTGVLTKGFTDWVFECHGFWHNAVLIIASFLFVLYLAFQAKKSFYKLTNGRSYIIISYYASLWLVSILNLAWCFSQAWECTPGKELTWNLLSLFTSSGMLFLEVSLLAFLLQGNNASGVEALTRTFGISGIIVGFDVLLKAIYLFAFGVPLFIDTDHGTPRLKWNLWVIHKLVLTVVYGLILFMYHSRWRERLPARPAFYKYVIIMFILNAIALFACGLTGNGAGFGFWFYHVTIVCYHAFYLPLLYITFLADFFQEEDFHMENVYYSEMKDAGFFESDWE*