AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1211230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211230 MtrunA17_Chr4g0060021 90.830 229 18 1 4 229 1 229 1.21e-147 410
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1211230 AT5G62720.1 56.150 187 79 2 45 229 58 243 2.32e-74 226
Msa1211230 AT3G47980.1 61.932 176 67 0 54 229 77 252 3.41e-72 220
Msa1211230 AT5G62720.2 55.072 138 59 2 45 180 58 194 2.25e-46 153

Find 121 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTTCAACAGTTGAGTTTC+TGG 0.125934 8_1:-70784525 Msa1211230:CDS
CGGTGGTAGTACCAAATTTA+TGG 0.147539 8_1:-70786066 Msa1211230:CDS
GCAGAAGTACAGTATGTTTA+TGG 0.153489 8_1:-70784808 Msa1211230:intron
CAGTATATCAAATTGGAATT+TGG 0.215578 8_1:+70784003 None:intergenic
ATGTCTTCTGTAATTGTTTC+CGG 0.215984 8_1:-70786086 Msa1211230:CDS
TCCCGCTAGAGCCTCGCTTC+TGG 0.233137 8_1:+70783886 None:intergenic
GGAATGAGTGGAAGAGGATT+TGG 0.281069 8_1:+70785887 None:intergenic
ATTTGCAGCAATGGCCATAT+TGG 0.282337 8_1:-70785277 Msa1211230:CDS
TTGTGCAGCCATTGGTGTTT+TGG 0.288656 8_1:-70784775 Msa1211230:CDS
CTGATCCATCTTTCCCAATA+TGG 0.299857 8_1:+70785263 None:intergenic
ATTGTTTGTTGGGTGACCTT+TGG 0.304515 8_1:-70786277 Msa1211230:five_prime_UTR
ACGTGGCCTCACCCTCCATC+TGG 0.304995 8_1:-70785926 Msa1211230:CDS
TGACAACGGTACCATAAATT+TGG 0.325955 8_1:+70786055 None:intergenic
CATAACATTATTAAGAAAAC+TGG 0.327821 8_1:+70786191 None:intergenic
TGCAAATTGCAACATTGTAT+TGG 0.335642 8_1:-70783835 Msa1211230:three_prime_UTR
TTGTTTGTTGGGTGACCTTT+GGG 0.339225 8_1:-70786276 Msa1211230:five_prime_UTR
AAGAAGGAATGTGATTATTA+AGG 0.343485 8_1:-70785958 Msa1211230:CDS
CAATGGCTGCACAACCTACT+TGG 0.345485 8_1:+70784784 None:intergenic
TTTGCAGCAATGGCCATATT+GGG 0.365439 8_1:-70785276 Msa1211230:CDS
CACCCTCAGCCCCTTCTGCC+CGG 0.367068 8_1:-70785170 Msa1211230:CDS
AAATTGGAATTTGGAAGATA+TGG 0.368448 8_1:+70784012 None:intergenic
CACCCTCCATCTGGGAGAAC+TGG 0.369226 8_1:-70785917 Msa1211230:CDS
CCCGCTAGAGCCTCGCTTCT+GGG 0.372708 8_1:+70783887 None:intergenic
TTCTGGTATGTCTTGTATCC+CGG 0.373881 8_1:-70784508 Msa1211230:CDS
GAATGAGTGGAAGAGGATTT+GGG 0.381725 8_1:+70785888 None:intergenic
AAAACCAATCTCTTATTCTT+CGG 0.383257 8_1:+70786002 None:intergenic
ATTCCTTCAGTGACATTCTC+TGG 0.388063 8_1:-70785869 Msa1211230:CDS
GGATCTTCAGTATATCAAAT+TGG 0.392498 8_1:+70783996 None:intergenic
GACATTCTCTGGCCTTCTGC+AGG 0.394844 8_1:-70785858 Msa1211230:intron
GTCTTGTATCCCGGGGCAGC+AGG 0.401947 8_1:-70784499 Msa1211230:CDS
AAACAATTACAGAAGACATT+TGG 0.403022 8_1:+70786090 None:intergenic
ATGTTAAAAGATGGTGATAA+TGG 0.407105 8_1:+70786029 None:intergenic
TTGAGCTAAGAATATTCTCC+AGG 0.411526 8_1:+70783974 None:intergenic
GGCAGAAGGGGCTGAGGGTG+AGG 0.416383 8_1:+70785173 None:intergenic
ATCAATGGTTCCTCCTCATC+TGG 0.422693 8_1:-70783736 Msa1211230:three_prime_UTR
CAAACCGAAGAATAAGAGAT+TGG 0.426795 8_1:-70786006 Msa1211230:CDS
TCAATCACAGTTGCACCATT+AGG 0.429248 8_1:-70785219 Msa1211230:CDS
ACTGTGATTGAGAGTCCTTT+TGG 0.443290 8_1:+70785231 None:intergenic
GCACTCTTGGCTAGCAATCC+AGG 0.449810 8_1:+70784735 None:intergenic
TACCCGGGCAGAAGGGGCTG+AGG 0.452991 8_1:+70785167 None:intergenic
GTATAGTACTTCTAAATGTC+TGG 0.454007 8_1:-70783765 Msa1211230:three_prime_UTR
ACGAGTTCAAACAAATTGTT+CGG 0.455537 8_1:+70783579 None:intergenic
AGCAGCAACACTAGCACTCT+TGG 0.457034 8_1:+70784722 None:intergenic
TAGAATGCATCCTGCTGCCC+CGG 0.459572 8_1:+70784489 None:intergenic
ATTGTTCGGAAGTATGCATC+TGG 0.461015 8_1:+70783593 None:intergenic
ACTAGTCCTCAACTCCTCAT+AGG 0.461861 8_1:+70783474 None:intergenic
TGACCTTTGGGCCATTTCAA+AGG 0.463142 8_1:-70786264 Msa1211230:five_prime_UTR
ACCCTCAGCCCCTTCTGCCC+GGG 0.469153 8_1:-70785169 Msa1211230:intron
ATTTGGGTTTGAAAGGAAGA+AGG 0.469818 8_1:-70785974 Msa1211230:CDS
TTCGGTTTGATGTTAAAAGA+TGG 0.478176 8_1:+70786020 None:intergenic
GAGAAACAATGCCTTGTTTG+TGG 0.482722 8_1:-70783511 Msa1211230:three_prime_UTR
AAATGAATGAGCCTTTGAAA+TGG 0.483919 8_1:+70786253 None:intergenic
CTAATTGCACTGATTAATCA+AGG 0.485223 8_1:-70786316 Msa1211230:five_prime_UTR
TCTAGCGGGAATTATGTTGA+TGG 0.485587 8_1:-70783873 Msa1211230:three_prime_UTR
CAAGTAGGTTGTGCAGCCAT+TGG 0.487463 8_1:-70784783 Msa1211230:CDS
TGTATTGGAATGAATTCATT+GGG 0.487568 8_1:-70783820 Msa1211230:three_prime_UTR
GAGCCTAAGTGGACTGAAGC+AGG 0.487617 8_1:+70783409 None:intergenic
GATCAGTTATTGACACCAAA+AGG 0.488111 8_1:-70785246 Msa1211230:CDS
GAAAAGCAATGGCATGCTTA+CGG 0.488854 8_1:+70784561 None:intergenic
TTCCTCCTCATCTGGTAACA+TGG 0.489228 8_1:-70783728 Msa1211230:three_prime_UTR
TTGTATTGGAATGAATTCAT+TGG 0.489717 8_1:-70783821 Msa1211230:three_prime_UTR
AGAGCAGACACTGCTCCTAA+TGG 0.490696 8_1:+70785204 None:intergenic
ATCAGGGGCATTTGCAGCAA+TGG 0.492588 8_1:-70785286 Msa1211230:intron
AAAACCCTCATTCGAGTTGG+AGG 0.501284 8_1:+70783312 None:intergenic
CATAAATTTGGTACTACCAC+CGG 0.501343 8_1:+70786067 None:intergenic
ACTGTAAAATAGAGCCTAAG+TGG 0.502242 8_1:+70783398 None:intergenic
AGGTTTCCAGTTCTCCCAGA+TGG 0.502717 8_1:+70785911 None:intergenic
TCTGGTATGTCTTGTATCCC+GGG 0.503259 8_1:-70784507 Msa1211230:CDS
TTCTCCCATGTTACCAGATG+AGG 0.506446 8_1:+70783723 None:intergenic
TTAGATTATTTGGGTTTGAA+AGG 0.508877 8_1:-70785981 Msa1211230:CDS
CAGATCTCTACGAAAACAGT+TGG 0.509113 8_1:-70783439 Msa1211230:three_prime_UTR
AATGTCTGGCTGCTTATCAA+TGG 0.510348 8_1:-70783751 Msa1211230:three_prime_UTR
CGTGGCCTCACCCTCCATCT+GGG 0.513595 8_1:-70785925 Msa1211230:CDS
TTTCCAGTTCTCCCAGATGG+AGG 0.521215 8_1:+70785914 None:intergenic
AATGGCCATATTGGGAAAGA+TGG 0.522770 8_1:-70785268 Msa1211230:CDS
ACTGAAGGAATGAGTGGAAG+AGG 0.523502 8_1:+70785881 None:intergenic
AATAGTAGTACCCGGGCAGA+AGG 0.525314 8_1:+70785159 None:intergenic
CCCAGAAGCGAGGCTCTAGC+GGG 0.526641 8_1:-70783887 Msa1211230:three_prime_UTR
AATGAACGACAAAATTGAAA+GGG 0.528745 8_1:-70783348 Msa1211230:three_prime_UTR
AATGGCTGCACAACCTACTT+GGG 0.529946 8_1:+70784785 None:intergenic
TCAACTCTCTCACAACTCAA+TGG 0.533270 8_1:-70786225 Msa1211230:five_prime_UTR
AACGACAAAATTGAAAGGGA+TGG 0.534226 8_1:-70783344 Msa1211230:three_prime_UTR
AAATGAACGACAAAATTGAA+AGG 0.536213 8_1:-70783349 Msa1211230:three_prime_UTR
CAAAATTGAAAGGGATGGAA+TGG 0.542140 8_1:-70783339 Msa1211230:three_prime_UTR
TCCCAGAAGCGAGGCTCTAG+CGG 0.543943 8_1:-70783888 Msa1211230:three_prime_UTR
TTTCCTGCTTCAGTCCACTT+AGG 0.552386 8_1:-70783412 Msa1211230:three_prime_UTR
TAGTAGTACCCGGGCAGAAG+GGG 0.552816 8_1:+70785161 None:intergenic
GTTCTCCCAGATGGAGGGTG+AGG 0.554854 8_1:+70785920 None:intergenic
GGATTTGCAATATTTGGACC+TGG 0.557125 8_1:-70784753 Msa1211230:CDS
TACAAGCCTATGAGGAGTTG+AGG 0.557903 8_1:-70783480 Msa1211230:three_prime_UTR
GTAGTCCTCCAACTCGAATG+AGG 0.559236 8_1:-70783317 Msa1211230:three_prime_UTR
TTCCAGTTCTCCCAGATGGA+GGG 0.561076 8_1:+70785915 None:intergenic
AAGAAAACCCTCATTCGAGT+TGG 0.561383 8_1:+70783309 None:intergenic
TTTGATATACTGAAGATCCC+TGG 0.565785 8_1:-70783992 Msa1211230:three_prime_UTR
ATAGTAGTACCCGGGCAGAA+GGG 0.569371 8_1:+70785160 None:intergenic
AGTATGTTTATGGCCCAAGT+AGG 0.569674 8_1:-70784798 Msa1211230:CDS
AGATCTCTACGAAAACAGTT+GGG 0.573517 8_1:-70783438 Msa1211230:three_prime_UTR
TCCTCCTCATCTGGTAACAT+GGG 0.576618 8_1:-70783727 Msa1211230:three_prime_UTR
AATGTCACTGAAGGAATGAG+TGG 0.582208 8_1:+70785875 None:intergenic
TCCCATGTTACCAGATGAGG+AGG 0.584871 8_1:+70783726 None:intergenic
AGAATGCATCCTGCTGCCCC+GGG 0.589508 8_1:+70784490 None:intergenic
ACCCGGGCAGAAGGGGCTGA+GGG 0.592231 8_1:+70785168 None:intergenic
TGAGCTAAGAATATTCTCCA+GGG 0.596755 8_1:+70783975 None:intergenic
AATTTGGAAGATATGGCAGA+AGG 0.603741 8_1:+70784019 None:intergenic
TATGGCAGAAGGATGGTCCC+TGG 0.605419 8_1:+70784030 None:intergenic
ACAGCATCAATGAAAAGCAA+TGG 0.607570 8_1:+70784550 None:intergenic
GGATGGTCCCTGGCTAGCAA+CGG 0.614139 8_1:+70784040 None:intergenic
TGGAAGATATGGCAGAAGGA+TGG 0.616679 8_1:+70784023 None:intergenic
TGCAAATCCCAAAACACCAA+TGG 0.618790 8_1:+70784767 None:intergenic
CTGGTATGTCTTGTATCCCG+GGG 0.621772 8_1:-70784506 Msa1211230:CDS
AGGCCAGAGAATGTCACTGA+AGG 0.622535 8_1:+70785866 None:intergenic
GAGCCTTTGAAATGGCCCAA+AGG 0.628112 8_1:+70786261 None:intergenic
TAGTCCTCCAACTCGAATGA+GGG 0.628671 8_1:-70783316 Msa1211230:three_prime_UTR
CATATCTCCGTTGCTAGCCA+GGG 0.629836 8_1:-70784047 Msa1211230:three_prime_UTR
TCTTCTGTAATTGTTTCCGG+TGG 0.651325 8_1:-70786083 Msa1211230:CDS
TGAGTGGAAGAGGATTTGGG+AGG 0.662152 8_1:+70785891 None:intergenic
GAGGAGTTGAGGACTAGTGA+AGG 0.668802 8_1:-70783469 Msa1211230:three_prime_UTR
TATGTGTTTACAAGCCTATG+AGG 0.672073 8_1:-70783488 Msa1211230:three_prime_UTR
TATTAAGGCATCAAGCGACG+TGG 0.697251 8_1:-70785943 Msa1211230:CDS
GTAAACACATACCACAAACA+AGG 0.700110 8_1:+70783500 None:intergenic
GGTGATAATGGTAATGACAA+CGG 0.705821 8_1:+70786041 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTTTTTAAAACTTG+TGG + chr8_1:70783340-70783359 None:intergenic 10.0%
!! GAGAATAATAAATAAAAAAT+AGG + chr8_1:70783858-70783877 None:intergenic 10.0%
!! TAAATTCATCTTTCAAATAA+AGG + chr8_1:70783880-70783899 None:intergenic 15.0%
!!! AAAAAACTTTTTAAATGTGA+AGG - chr8_1:70783934-70783953 Msa1211230:three_prime_UTR 15.0%
!!! ATTATAATACTATTTCTTTG+AGG + chr8_1:70784101-70784120 None:intergenic 15.0%
!!! TATTACTACTATTTCTTTTT+AGG - chr8_1:70784548-70784567 Msa1211230:CDS 15.0%
!! GATAAATATCATTAATACAA+TGG - chr8_1:70784623-70784642 Msa1211230:intron 15.0%
!!! ACAATATTTTATATTTGGTT+GGG + chr8_1:70785768-70785787 None:intergenic 15.0%
!! CATAACATTATTAAGAAAAC+TGG + chr8_1:70783500-70783519 None:intergenic 20.0%
!!! AGATTGGTTTTAGATTATTT+GGG - chr8_1:70783698-70783717 Msa1211230:three_prime_UTR 20.0%
!! ACATAATAGTGAGATAAAAT+TGG + chr8_1:70783976-70783995 None:intergenic 20.0%
!! TGTGTTTATAAAAATCATCA+GGG - chr8_1:70784386-70784405 Msa1211230:intron 20.0%
!! TAATGATATTTATCCCATTA+AGG + chr8_1:70784617-70784636 None:intergenic 20.0%
!!! TAATTTTATCAAATCATTGC+CGG + chr8_1:70784687-70784706 None:intergenic 20.0%
!!! TTTGTTGGTTTAATATTTGA+TGG + chr8_1:70785089-70785108 None:intergenic 20.0%
!! TCTATTTGTACTATCAATAA+AGG - chr8_1:70785258-70785277 Msa1211230:CDS 20.0%
!!! ATGTTCATTGTTTTAAAAAC+CGG + chr8_1:70785394-70785413 None:intergenic 20.0%
!!! AATATTTTATATTTGGTTGG+GGG + chr8_1:70785766-70785785 None:intergenic 20.0%
!!! CAATATTTTATATTTGGTTG+GGG + chr8_1:70785767-70785786 None:intergenic 20.0%
!!! GACAATATTTTATATTTGGT+TGG + chr8_1:70785769-70785788 None:intergenic 20.0%
! AATCAAGGAAATAGAAAAAG+TGG - chr8_1:70783387-70783406 Msa1211230:three_prime_UTR 25.0%
! AAACAATTACAGAAGACATT+TGG + chr8_1:70783601-70783620 None:intergenic 25.0%
! ATGTTAAAAGATGGTGATAA+TGG + chr8_1:70783662-70783681 None:intergenic 25.0%
! AAAACCAATCTCTTATTCTT+CGG + chr8_1:70783689-70783708 None:intergenic 25.0%
!!! GAGATTGGTTTTAGATTATT+TGG - chr8_1:70783697-70783716 Msa1211230:three_prime_UTR 25.0%
!! TTAGATTATTTGGGTTTGAA+AGG - chr8_1:70783707-70783726 Msa1211230:three_prime_UTR 25.0%
! AAGAAGGAATGTGATTATTA+AGG - chr8_1:70783730-70783749 Msa1211230:three_prime_UTR 25.0%
! ATTACTATTCTATGCAACAA+CGG - chr8_1:70783906-70783925 Msa1211230:three_prime_UTR 25.0%
! TAATAAGTATATCCATCTTG+TGG + chr8_1:70784029-70784048 None:intergenic 25.0%
! TTTCATAAAATATGCTCTTG+TGG + chr8_1:70784128-70784147 None:intergenic 25.0%
!! AATAACTTCTCATTTGAAAC+TGG + chr8_1:70784204-70784223 None:intergenic 25.0%
!! GAGTACTTGTCAATAATTTT+TGG - chr8_1:70784318-70784337 Msa1211230:intron 25.0%
! TAAACACACATCAAAACAAA+AGG + chr8_1:70784374-70784393 None:intergenic 25.0%
! GTGTGTTTATAAAAATCATC+AGG - chr8_1:70784385-70784404 Msa1211230:intron 25.0%
! GTGTTTATAAAAATCATCAG+GGG - chr8_1:70784387-70784406 Msa1211230:intron 25.0%
!!! TATTTCTTTTTAGGCCTTAA+TGG - chr8_1:70784600-70784619 Msa1211230:intron 25.0%
!!! ATTTCTTTTTAGGCCTTAAT+GGG - chr8_1:70784601-70784620 Msa1211230:intron 25.0%
!!! TGAAACAAAAGCATTTAAGT+AGG + chr8_1:70784808-70784827 None:intergenic 25.0%
! TTTGTACTATCAATAAAGGA+AGG - chr8_1:70785262-70785281 Msa1211230:CDS 25.0%
!!! GGTTCAGTTTTTAAAAACAT+TGG + chr8_1:70785303-70785322 None:intergenic 25.0%
! AAATTGGAATTTGGAAGATA+TGG + chr8_1:70785679-70785698 None:intergenic 25.0%
! CAGTATATCAAATTGGAATT+TGG + chr8_1:70785688-70785707 None:intergenic 25.0%
!! CTGGGACAATATTTTATATT+TGG + chr8_1:70785773-70785792 None:intergenic 25.0%
! TTGTATTGGAATGAATTCAT+TGG - chr8_1:70785867-70785886 Msa1211230:CDS 25.0%
! TGTATTGGAATGAATTCATT+GGG - chr8_1:70785868-70785887 Msa1211230:CDS 25.0%
! AAATGAACGACAAAATTGAA+AGG - chr8_1:70786339-70786358 Msa1211230:five_prime_UTR 25.0%
! AATGAACGACAAAATTGAAA+GGG - chr8_1:70786340-70786359 Msa1211230:five_prime_UTR 25.0%
!! CTAATTGCACTGATTAATCA+AGG - chr8_1:70783372-70783391 Msa1211230:three_prime_UTR 30.0%
AAAAAGTGGCATTGTTTGTT+GGG - chr8_1:70783401-70783420 Msa1211230:three_prime_UTR 30.0%
! AAATGAATGAGCCTTTGAAA+TGG + chr8_1:70783438-70783457 None:intergenic 30.0%
ATGTCTTCTGTAATTGTTTC+CGG - chr8_1:70783602-70783621 Msa1211230:three_prime_UTR 30.0%
! TTCGGTTTGATGTTAAAAGA+TGG + chr8_1:70783671-70783690 None:intergenic 30.0%
! TTTAACTTATCTCCACAAGA+TGG - chr8_1:70784014-70784033 Msa1211230:three_prime_UTR 30.0%
ATAGTAGTAATAGTAGTACC+CGG + chr8_1:70784540-70784559 None:intergenic 30.0%
!!! GTTTTGGGATTTGCAATATT+TGG - chr8_1:70784929-70784948 Msa1211230:intron 30.0%
ACATTGAAGCAAAAATACCT+GGG + chr8_1:70785030-70785049 None:intergenic 30.0%
AACATTGAAGCAAAAATACC+TGG + chr8_1:70785031-70785050 None:intergenic 30.0%
! CACGATATCACAAATTTTGT+TGG + chr8_1:70785104-70785123 None:intergenic 30.0%
AAACATTGGACGTGTTTATT+GGG + chr8_1:70785289-70785308 None:intergenic 30.0%
AAAACATTGGACGTGTTTAT+TGG + chr8_1:70785290-70785309 None:intergenic 30.0%
! TCTTGTTTATGGTTCAATGT+TGG - chr8_1:70785362-70785381 Msa1211230:intron 30.0%
! GTACTAAAAATTGTTTTCGG+AGG + chr8_1:70785438-70785457 None:intergenic 30.0%
! CGGGTACTAAAAATTGTTTT+CGG + chr8_1:70785441-70785460 None:intergenic 30.0%
!!! CGAAAACAATTTTTAGTACC+CGG - chr8_1:70785439-70785458 Msa1211230:intron 30.0%
TAAACTAGTAGTAATGAACC+GGG + chr8_1:70785460-70785479 None:intergenic 30.0%
GTAAACTAGTAGTAATGAAC+CGG + chr8_1:70785461-70785480 None:intergenic 30.0%
!! CAATTAGTTAACTTGCAATG+AGG + chr8_1:70785525-70785544 None:intergenic 30.0%
CTCATTGCAAGTTAACTAAT+TGG - chr8_1:70785523-70785542 Msa1211230:intron 30.0%
TCTTGCTGAACAAAAAAAAC+AGG + chr8_1:70785553-70785572 None:intergenic 30.0%
!!! TGTTTTTTTTGTTCAGCAAG+AGG - chr8_1:70785552-70785571 Msa1211230:intron 30.0%
GGATCTTCAGTATATCAAAT+TGG + chr8_1:70785695-70785714 None:intergenic 30.0%
TGCAAATTGCAACATTGTAT+TGG - chr8_1:70785853-70785872 Msa1211230:intron 30.0%
GTATAGTACTTCTAAATGTC+TGG - chr8_1:70785923-70785942 Msa1211230:CDS 30.0%
ACGAGTTCAAACAAATTGTT+CGG + chr8_1:70786112-70786131 None:intergenic 30.0%
! TAGGCTCTATTTTACAGTTT+AGG - chr8_1:70786295-70786314 Msa1211230:five_prime_UTR 30.0%
GAAAAAGTGGCATTGTTTGT+TGG - chr8_1:70783400-70783419 Msa1211230:three_prime_UTR 35.0%
TATATGCACATGACATCACA+GGG + chr8_1:70783533-70783552 None:intergenic 35.0%
CATAAATTTGGTACTACCAC+CGG + chr8_1:70783624-70783643 None:intergenic 35.0%
TGACAACGGTACCATAAATT+TGG + chr8_1:70783636-70783655 None:intergenic 35.0%
!! GGTGATAATGGTAATGACAA+CGG + chr8_1:70783650-70783669 None:intergenic 35.0%
CAAACCGAAGAATAAGAGAT+TGG - chr8_1:70783682-70783701 Msa1211230:three_prime_UTR 35.0%
! ATTTGGGTTTGAAAGGAAGA+AGG - chr8_1:70783714-70783733 Msa1211230:three_prime_UTR 35.0%
AAAAAATAGGAACCTGCAGA+AGG + chr8_1:70783845-70783864 None:intergenic 35.0%
GCATATCAATGTTGTGATGA+TGG + chr8_1:70784259-70784278 None:intergenic 35.0%
GATCAGTTATTGACACCAAA+AGG - chr8_1:70784442-70784461 Msa1211230:intron 35.0%
TAGTAGTAATAGTAGTACCC+GGG + chr8_1:70784539-70784558 None:intergenic 35.0%
CAATTTAGACACTGAAGCAT+TGG + chr8_1:70784772-70784791 None:intergenic 35.0%
ACTTCTGCATAATCACACTT+GGG + chr8_1:70784868-70784887 None:intergenic 35.0%
TACTTCTGCATAATCACACT+TGG + chr8_1:70784869-70784888 None:intergenic 35.0%
! GCAGAAGTACAGTATGTTTA+TGG - chr8_1:70784880-70784899 Msa1211230:intron 35.0%
ATTGAAGCAAAAATACCTGG+GGG + chr8_1:70785028-70785047 None:intergenic 35.0%
CATTGAAGCAAAAATACCTG+GGG + chr8_1:70785029-70785048 None:intergenic 35.0%
ACAGCATCAATGAAAAGCAA+TGG + chr8_1:70785141-70785160 None:intergenic 35.0%
AGTTTCAACAGTTGAGTTTC+TGG - chr8_1:70785163-70785182 Msa1211230:intron 35.0%
!!! TTTTTTTGTTCAGCAAGAGG+TGG - chr8_1:70785555-70785574 Msa1211230:intron 35.0%
AATTTGGAAGATATGGCAGA+AGG + chr8_1:70785672-70785691 None:intergenic 35.0%
TTTGATATACTGAAGATCCC+TGG - chr8_1:70785696-70785715 Msa1211230:intron 35.0%
TGAGCTAAGAATATTCTCCA+GGG + chr8_1:70785716-70785735 None:intergenic 35.0%
TTGAGCTAAGAATATTCTCC+AGG + chr8_1:70785717-70785736 None:intergenic 35.0%
GTAAACACATACCACAAACA+AGG + chr8_1:70786191-70786210 None:intergenic 35.0%
TATGTGTTTACAAGCCTATG+AGG - chr8_1:70786200-70786219 Msa1211230:five_prime_UTR 35.0%
AGATCTCTACGAAAACAGTT+GGG - chr8_1:70786250-70786269 Msa1211230:five_prime_UTR 35.0%
ACTGTAAAATAGAGCCTAAG+TGG + chr8_1:70786293-70786312 None:intergenic 35.0%
!! ATTTTACAGTTTAGGACGAG+AGG - chr8_1:70786303-70786322 Msa1211230:five_prime_UTR 35.0%
!! TTTTACAGTTTAGGACGAGA+GGG - chr8_1:70786304-70786323 Msa1211230:five_prime_UTR 35.0%
AACGACAAAATTGAAAGGGA+TGG - chr8_1:70786344-70786363 Msa1211230:five_prime_UTR 35.0%
CAAAATTGAAAGGGATGGAA+TGG - chr8_1:70786349-70786368 Msa1211230:five_prime_UTR 35.0%
! ATTGTTTGTTGGGTGACCTT+TGG - chr8_1:70783411-70783430 Msa1211230:three_prime_UTR 40.0%
! TTGTTTGTTGGGTGACCTTT+GGG - chr8_1:70783412-70783431 Msa1211230:three_prime_UTR 40.0%
TCAACTCTCTCACAACTCAA+TGG - chr8_1:70783463-70783482 Msa1211230:three_prime_UTR 40.0%
CTATATGCACATGACATCAC+AGG + chr8_1:70783534-70783553 None:intergenic 40.0%
TCTTCTGTAATTGTTTCCGG+TGG - chr8_1:70783605-70783624 Msa1211230:three_prime_UTR 40.0%
CGGTGGTAGTACCAAATTTA+TGG - chr8_1:70783622-70783641 Msa1211230:three_prime_UTR 40.0%
GAATGAGTGGAAGAGGATTT+GGG + chr8_1:70783803-70783822 None:intergenic 40.0%
AATGTCACTGAAGGAATGAG+TGG + chr8_1:70783816-70783835 None:intergenic 40.0%
ATTCCTTCAGTGACATTCTC+TGG - chr8_1:70783819-70783838 Msa1211230:three_prime_UTR 40.0%
ATTTGCAGCAATGGCCATAT+TGG - chr8_1:70784411-70784430 Msa1211230:intron 40.0%
TTTGCAGCAATGGCCATATT+GGG - chr8_1:70784412-70784431 Msa1211230:intron 40.0%
AATGGCCATATTGGGAAAGA+TGG - chr8_1:70784420-70784439 Msa1211230:intron 40.0%
CTGATCCATCTTTCCCAATA+TGG + chr8_1:70784428-70784447 None:intergenic 40.0%
! ACTGTGATTGAGAGTCCTTT+TGG + chr8_1:70784460-70784479 None:intergenic 40.0%
TCAATCACAGTTGCACCATT+AGG - chr8_1:70784469-70784488 Msa1211230:intron 40.0%
TGACACTGATACATTGACAC+CGG - chr8_1:70784665-70784684 Msa1211230:intron 40.0%
AGTATGTTTATGGCCCAAGT+AGG - chr8_1:70784890-70784909 Msa1211230:intron 40.0%
TGCAAATCCCAAAACACCAA+TGG + chr8_1:70784924-70784943 None:intergenic 40.0%
GGATTTGCAATATTTGGACC+TGG - chr8_1:70784935-70784954 Msa1211230:intron 40.0%
TTGAAGCAAAAATACCTGGG+GGG + chr8_1:70785027-70785046 None:intergenic 40.0%
GAAAAGCAATGGCATGCTTA+CGG + chr8_1:70785130-70785149 None:intergenic 40.0%
TTCTGGTATGTCTTGTATCC+CGG - chr8_1:70785180-70785199 Msa1211230:CDS 40.0%
AGTTAAACCGGACAGTTTGA+TGG + chr8_1:70785328-70785347 None:intergenic 40.0%
TGTCCACAGTTCAGTTAAAC+CGG + chr8_1:70785340-70785359 None:intergenic 40.0%
! CTGTGGACAGTTCTTGTTTA+TGG - chr8_1:70785351-70785370 Msa1211230:intron 40.0%
!! ATGAGGAGCTCATTTTAGGA+GGG + chr8_1:70785508-70785527 None:intergenic 40.0%
! AATGAGGAGCTCATTTTAGG+AGG + chr8_1:70785509-70785528 None:intergenic 40.0%
! TGCAATGAGGAGCTCATTTT+AGG + chr8_1:70785512-70785531 None:intergenic 40.0%
TCTAGCGGGAATTATGTTGA+TGG - chr8_1:70785815-70785834 Msa1211230:intron 40.0%
AATGTCTGGCTGCTTATCAA+TGG - chr8_1:70785937-70785956 Msa1211230:CDS 40.0%
! ATTGTTCGGAAGTATGCATC+TGG + chr8_1:70786098-70786117 None:intergenic 40.0%
!! GAGAAACAATGCCTTGTTTG+TGG - chr8_1:70786177-70786196 Msa1211230:intron 40.0%
! TGTTTTCGTAGAGATCTGAG+TGG + chr8_1:70786247-70786266 None:intergenic 40.0%
CAGATCTCTACGAAAACAGT+TGG - chr8_1:70786249-70786268 Msa1211230:five_prime_UTR 40.0%
AAGAAAACCCTCATTCGAGT+TGG + chr8_1:70786382-70786401 None:intergenic 40.0%
TGACCTTTGGGCCATTTCAA+AGG - chr8_1:70783424-70783443 Msa1211230:three_prime_UTR 45.0%
! TATTAAGGCATCAAGCGACG+TGG - chr8_1:70783745-70783764 Msa1211230:three_prime_UTR 45.0%
GGAATGAGTGGAAGAGGATT+TGG + chr8_1:70783804-70783823 None:intergenic 45.0%
ACTGAAGGAATGAGTGGAAG+AGG + chr8_1:70783810-70783829 None:intergenic 45.0%
AATGGCTGCACAACCTACTT+GGG + chr8_1:70784906-70784925 None:intergenic 45.0%
!! TTGTGCAGCCATTGGTGTTT+TGG - chr8_1:70784913-70784932 Msa1211230:intron 45.0%
!! TGTGCAGCCATTGGTGTTTT+GGG - chr8_1:70784914-70784933 Msa1211230:intron 45.0%
TCTGGTATGTCTTGTATCCC+GGG - chr8_1:70785181-70785200 Msa1211230:CDS 45.0%
TGTCCGGTTTAACTGAACTG+TGG - chr8_1:70785334-70785353 Msa1211230:intron 45.0%
GGTTCAATGTTGGAACTGTC+CGG - chr8_1:70785372-70785391 Msa1211230:intron 45.0%
!! CATTTTAGGAGGGAGAGACA+TGG + chr8_1:70785498-70785517 None:intergenic 45.0%
TGGAAGATATGGCAGAAGGA+TGG + chr8_1:70785668-70785687 None:intergenic 45.0%
! CGCTTCTGGGAGAAAAATCT+GGG + chr8_1:70785791-70785810 None:intergenic 45.0%
! TCGCTTCTGGGAGAAAAATC+TGG + chr8_1:70785792-70785811 None:intergenic 45.0%
! AGATTTTTCTCCCAGAAGCG+AGG - chr8_1:70785791-70785810 Msa1211230:intron 45.0%
ATCAATGGTTCCTCCTCATC+TGG - chr8_1:70785952-70785971 Msa1211230:CDS 45.0%
TTCCTCCTCATCTGGTAACA+TGG - chr8_1:70785960-70785979 Msa1211230:CDS 45.0%
TCCTCCTCATCTGGTAACAT+GGG - chr8_1:70785961-70785980 Msa1211230:CDS 45.0%
TTCTCCCATGTTACCAGATG+AGG + chr8_1:70785968-70785987 None:intergenic 45.0%
TACAAGCCTATGAGGAGTTG+AGG - chr8_1:70786208-70786227 Msa1211230:five_prime_UTR 45.0%
ACTAGTCCTCAACTCCTCAT+AGG + chr8_1:70786217-70786236 None:intergenic 45.0%
TTTCCTGCTTCAGTCCACTT+AGG - chr8_1:70786276-70786295 Msa1211230:five_prime_UTR 45.0%
TAGTCCTCCAACTCGAATGA+GGG - chr8_1:70786372-70786391 Msa1211230:five_prime_UTR 45.0%
!! AAAACCCTCATTCGAGTTGG+AGG + chr8_1:70786379-70786398 None:intergenic 45.0%
!!! TCTTTTTTTTTTTTTTTTTT+TGG - chr8_1:70784561-70784580 Msa1211230:CDS 5.0%
!! GAGCCTTTGAAATGGCCCAA+AGG + chr8_1:70783430-70783449 None:intergenic 50.0%
TGCACATGACATCACAGGGA+GGG + chr8_1:70783529-70783548 None:intergenic 50.0%
ATGCACATGACATCACAGGG+AGG + chr8_1:70783530-70783549 None:intergenic 50.0%
TTCCAGTTCTCCCAGATGGA+GGG + chr8_1:70783776-70783795 None:intergenic 50.0%
TTTCCAGTTCTCCCAGATGG+AGG + chr8_1:70783777-70783796 None:intergenic 50.0%
AGGTTTCCAGTTCTCCCAGA+TGG + chr8_1:70783780-70783799 None:intergenic 50.0%
TGAGTGGAAGAGGATTTGGG+AGG + chr8_1:70783800-70783819 None:intergenic 50.0%
AGGCCAGAGAATGTCACTGA+AGG + chr8_1:70783825-70783844 None:intergenic 50.0%
!! ATCAGGGGCATTTGCAGCAA+TGG - chr8_1:70784402-70784421 Msa1211230:intron 50.0%
AGAGCAGACACTGCTCCTAA+TGG + chr8_1:70784487-70784506 None:intergenic 50.0%
ATAGTAGTACCCGGGCAGAA+GGG + chr8_1:70784531-70784550 None:intergenic 50.0%
AATAGTAGTACCCGGGCAGA+AGG + chr8_1:70784532-70784551 None:intergenic 50.0%
CAATGGCTGCACAACCTACT+TGG + chr8_1:70784907-70784926 None:intergenic 50.0%
CAAGTAGGTTGTGCAGCCAT+TGG - chr8_1:70784905-70784924 Msa1211230:intron 50.0%
AGCAGCAACACTAGCACTCT+TGG + chr8_1:70784969-70784988 None:intergenic 50.0%
CTGGTATGTCTTGTATCCCG+GGG - chr8_1:70785182-70785201 Msa1211230:CDS 50.0%
GAACCAGCCATCAAACTGTC+CGG - chr8_1:70785318-70785337 Msa1211230:intron 50.0%
! AAACCGGACAGTTTGATGGC+TGG + chr8_1:70785324-70785343 None:intergenic 50.0%
ACATATCTCCGTTGCTAGCC+AGG - chr8_1:70785640-70785659 Msa1211230:intron 50.0%
CATATCTCCGTTGCTAGCCA+GGG - chr8_1:70785641-70785660 Msa1211230:intron 50.0%
TCCCATGTTACCAGATGAGG+AGG + chr8_1:70785965-70785984 None:intergenic 50.0%
! GAGGAGTTGAGGACTAGTGA+AGG - chr8_1:70786219-70786238 Msa1211230:five_prime_UTR 50.0%
GTAGTCCTCCAACTCGAATG+AGG - chr8_1:70786371-70786390 Msa1211230:five_prime_UTR 50.0%
! GACATTCTCTGGCCTTCTGC+AGG - chr8_1:70783830-70783849 Msa1211230:three_prime_UTR 55.0%
TAGTAGTACCCGGGCAGAAG+GGG + chr8_1:70784530-70784549 None:intergenic 55.0%
GCACTCTTGGCTAGCAATCC+AGG + chr8_1:70784956-70784975 None:intergenic 55.0%
TAGAATGCATCCTGCTGCCC+CGG + chr8_1:70785202-70785221 None:intergenic 55.0%
TATGGCAGAAGGATGGTCCC+TGG + chr8_1:70785661-70785680 None:intergenic 55.0%
!! GAGCCTAAGTGGACTGAAGC+AGG + chr8_1:70786282-70786301 None:intergenic 55.0%
GTTCTCCCAGATGGAGGGTG+AGG + chr8_1:70783771-70783790 None:intergenic 60.0%
CACCCTCCATCTGGGAGAAC+TGG - chr8_1:70783771-70783790 Msa1211230:three_prime_UTR 60.0%
! ACTGACTCTGTTCACCCCCC+AGG - chr8_1:70785010-70785029 Msa1211230:intron 60.0%
AGAATGCATCCTGCTGCCCC+GGG + chr8_1:70785201-70785220 None:intergenic 60.0%
GGATGGTCCCTGGCTAGCAA+CGG + chr8_1:70785651-70785670 None:intergenic 60.0%
! TCCCAGAAGCGAGGCTCTAG+CGG - chr8_1:70785800-70785819 Msa1211230:intron 60.0%
ACGTGGCCTCACCCTCCATC+TGG - chr8_1:70783762-70783781 Msa1211230:three_prime_UTR 65.0%
CGTGGCCTCACCCTCCATCT+GGG - chr8_1:70783763-70783782 Msa1211230:three_prime_UTR 65.0%
GTCTTGTATCCCGGGGCAGC+AGG - chr8_1:70785189-70785208 Msa1211230:CDS 65.0%
CCCGCTAGAGCCTCGCTTCT+GGG + chr8_1:70785804-70785823 None:intergenic 65.0%
! CCCAGAAGCGAGGCTCTAGC+GGG - chr8_1:70785801-70785820 Msa1211230:intron 65.0%
TCCCGCTAGAGCCTCGCTTC+TGG + chr8_1:70785805-70785824 None:intergenic 65.0%
GGCAGAAGGGGCTGAGGGTG+AGG + chr8_1:70784518-70784537 None:intergenic 70.0%
CACCCTCAGCCCCTTCTGCC+CGG - chr8_1:70784518-70784537 Msa1211230:CDS 70.0%
ACCCTCAGCCCCTTCTGCCC+GGG - chr8_1:70784519-70784538 Msa1211230:CDS 70.0%
ACCCGGGCAGAAGGGGCTGA+GGG + chr8_1:70784523-70784542 None:intergenic 70.0%
TACCCGGGCAGAAGGGGCTG+AGG + chr8_1:70784524-70784543 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 70783304 70786406 70783304 ID=Msa1211230;Name=Msa1211230
chr8_1 mRNA 70783304 70786406 70783304 ID=Msa1211230-mRNA-1;Parent=Msa1211230;Name=Msa1211230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=269|1|1|1|0.6|0.5|6|797|229
chr8_1 exon 70783304 70784142 70783304 ID=Msa1211230-mRNA-1:exon:23687;Parent=Msa1211230-mRNA-1
chr8_1 exon 70784477 70784583 70784477 ID=Msa1211230-mRNA-1:exon:23686;Parent=Msa1211230-mRNA-1
chr8_1 exon 70784679 70784826 70784679 ID=Msa1211230-mRNA-1:exon:23685;Parent=Msa1211230-mRNA-1
chr8_1 exon 70785170 70785303 70785170 ID=Msa1211230-mRNA-1:exon:23684;Parent=Msa1211230-mRNA-1
chr8_1 exon 70785859 70786175 70785859 ID=Msa1211230-mRNA-1:exon:23683;Parent=Msa1211230-mRNA-1
chr8_1 exon 70786196 70786406 70786196 ID=Msa1211230-mRNA-1:exon:23682;Parent=Msa1211230-mRNA-1
chr8_1 five_prime_UTR 70786196 70786406 70786196 ID=Msa1211230-mRNA-1:five_prime_utr;Parent=Msa1211230-mRNA-1
chr8_1 five_prime_UTR 70786118 70786175 70786118 ID=Msa1211230-mRNA-1:five_prime_utr;Parent=Msa1211230-mRNA-1
chr8_1 CDS 70785859 70786117 70785859 ID=Msa1211230-mRNA-1:cds;Parent=Msa1211230-mRNA-1
chr8_1 CDS 70785170 70785303 70785170 ID=Msa1211230-mRNA-1:cds;Parent=Msa1211230-mRNA-1
chr8_1 CDS 70784679 70784826 70784679 ID=Msa1211230-mRNA-1:cds;Parent=Msa1211230-mRNA-1
chr8_1 CDS 70784477 70784583 70784477 ID=Msa1211230-mRNA-1:cds;Parent=Msa1211230-mRNA-1
chr8_1 CDS 70784101 70784142 70784101 ID=Msa1211230-mRNA-1:cds;Parent=Msa1211230-mRNA-1
chr8_1 three_prime_UTR 70783304 70784100 70783304 ID=Msa1211230-mRNA-1:three_prime_utr;Parent=Msa1211230-mRNA-1
Gene Sequence

>Msa1211230

ATGCTCCAAATGTCTTCTGTAATTGTTTCCGGTGGTAGTACCAAATTTATGGTACCGTTGTCATTACCATTATCACCATCTTTTAACATCAAACCGAAGAATAAGAGATTGGTTTTAGATTATTTGGGTTTGAAAGGAAGAAGGAATGTGATTATTAAGGCATCAAGCGACGTGGCCTCACCCTCCATCTGGGAGAACTGGAAACCTCCCAAATCCTCTTCCACTCATTCCTTCAGTGACATTCTCTGGCCTTCTGCAGGGGCATTTGCAGCAATGGCCATATTGGGAAAGATGGATCAGTTATTGACACCAAAAGGACTCTCAATCACAGTTGCACCATTAGGAGCAGTGTCTGCTCTCTTGTTTGCCTCACCCTCAGCCCCTTCTGCCCGGAAGTACAGTATGTTTATGGCCCAAGTAGGTTGTGCAGCCATTGGTGTTTTGGGATTTGCAATATTTGGACCTGGATTGCTAGCCAAGAGTGCTAGTGTTGCTGCTTGTATTGCTTACATGATTTACACTGACTCTGTTCACCCCCCAGCCGTAAGCATGCCATTGCTTTTCATTGATGCTGTTAAGTTTCAACAGTTGAGTTTCTGGTATGTCTTGTATCCCGGGGCAGCAGGATGCATTCTACTTTGCTTGATTCAAGAGGTGGTTCTATACATGAAGCAAAATTTCAAATTCTGA

Protein sequence

>Msa1211230

MLQMSSVIVSGGSTKFMVPLSLPLSPSFNIKPKNKRLVLDYLGLKGRRNVIIKASSDVASPSIWENWKPPKSSSTHSFSDILWPSAGAFAAMAILGKMDQLLTPKGLSITVAPLGAVSALLFASPSAPSARKYSMFMAQVGCAAIGVLGFAIFGPGLLAKSASVAACIAYMIYTDSVHPPAVSMPLLFIDAVKFQQLSFWYVLYPGAAGCILLCLIQEVVLYMKQNFKF*