AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0090570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090570 MtrunA17_Chr1g0210571 98.489 331 5 0 1 331 1 331 0.0 671
Msa0090570 MtrunA17_Chr1g0171071 59.483 348 125 2 1 332 1 348 6.67e-151 427
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0090570 AT3G54290.1 48.603 358 139 5 1 327 1 344 2.64e-112 330

Find 139 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAAAACGACACCGTAATT+TGG 0.148058 1_2:-72649529 None:intergenic
GGAGGCGCGGTTTCCGAATT+TGG 0.161837 1_2:+72649935 Msa0090570:CDS
CATCAAATCTGTTGGTGTTT+TGG 0.169536 1_2:+72650987 Msa0090570:CDS
GGAGAAGGTGTTGCGGTTTA+TGG 0.195686 1_2:+72649914 Msa0090570:CDS
TATCCAACCGTCCGTTTATA+CGG 0.262754 1_2:+72649726 Msa0090570:CDS
CCCTTTACCTCGTGATAGTT+TGG 0.283681 1_2:+72651905 Msa0090570:three_prime_UTR
TACAAGGCCTCTTGAAAATC+AGG 0.294709 1_2:-72651021 None:intergenic
TTGGTGACGGTGGGCGGCGG+TGG 0.301202 1_2:+72649954 Msa0090570:CDS
CGGCGGTGGTGGTGTGGAGG+AGG 0.308518 1_2:+72649968 Msa0090570:CDS
ACTTCACTGCAACACTCTAA+TGG 0.311284 1_2:+72649638 Msa0090570:exon
GTAATGTACATCCAAGTATA+TGG 0.327079 1_2:+72651955 Msa0090570:three_prime_UTR
TCAAAAGTACATGAGTTTAC+TGG 0.328780 1_2:+72651990 Msa0090570:three_prime_UTR
TCTTTCACTTAACTATCATT+TGG 0.331758 1_2:-72651660 None:intergenic
CCGCCCACCGTCACCAAATT+CGG 0.342200 1_2:-72649948 None:intergenic
TCTTCACAAATCCGTTTCAT+TGG 0.345315 1_2:+72649791 Msa0090570:CDS
GAAGCACCCAGCACATGATA+TGG 0.352920 1_2:+72651782 Msa0090570:three_prime_UTR
TGCTCGCCTCAAGTTATTGC+TGG 0.359822 1_2:+72651053 Msa0090570:CDS
GGTGGGCGGCGGTGGTGGTG+TGG 0.365661 1_2:+72649962 Msa0090570:CDS
TGTGAAACGTGGAGGGAAAA+AGG 0.368154 1_2:+72650082 Msa0090570:CDS
TTAAAGTGAGAGAAGAGATT+TGG 0.372753 1_2:-72649481 None:intergenic
AGTGGATTTACTTCCACTAA+TGG 0.378349 1_2:+72651456 Msa0090570:CDS
GTGTTGCAGTGAAGTTGTTT+TGG 0.381585 1_2:-72649630 None:intergenic
GTGACGGTGGGCGGCGGTGG+TGG 0.381919 1_2:+72649957 Msa0090570:CDS
ACCTCGTGATAGTTTGGATA+AGG 0.386961 1_2:+72651911 Msa0090570:three_prime_UTR
AACTCCAATGCCTCCATTAG+TGG 0.389254 1_2:-72651469 None:intergenic
CTTCACTGCAACACTCTAAT+GGG 0.389648 1_2:+72649639 Msa0090570:exon
CCAAACTATCACGAGGTAAA+GGG 0.394335 1_2:-72651905 None:intergenic
GGGCGGCGGTGGTGGTGTGG+AGG 0.415226 1_2:+72649965 Msa0090570:CDS
GAAATTCGCGAGAAGCTATT+CGG 0.416829 1_2:+72650145 Msa0090570:CDS
GTTTGTTATATTGCATGTGT+TGG 0.417783 1_2:+72652012 Msa0090570:three_prime_UTR
GTTGGATCCGAAAGTGTTAC+GGG 0.417848 1_2:+72649885 Msa0090570:CDS
CCGCGAACCCGTAACACTTT+CGG 0.423723 1_2:-72649892 None:intergenic
TCCAAACTATCACGAGGTAA+AGG 0.431302 1_2:-72651906 None:intergenic
GTGAGAGAAGAGATTTGGTT+TGG 0.436332 1_2:-72649476 None:intergenic
AATTTCCTTATCTCCATCTT+CGG 0.441143 1_2:-72650128 None:intergenic
GGGATATCATTTGGAAGAGT+AGG 0.443139 1_2:+72651861 Msa0090570:three_prime_UTR
AGTTGGATCCGAAAGTGTTA+CGG 0.443569 1_2:+72649884 Msa0090570:CDS
TGAAGAGTGACGTGTCCATC+CGG 0.447849 1_2:-72649861 None:intergenic
GATAGTTAAGTGAAAGATGC+AGG 0.450570 1_2:+72651666 Msa0090570:exon
ATTGGAGATTAGTGAATGAA+TGG 0.454384 1_2:-72649602 None:intergenic
CCGAATTTGGTGACGGTGGG+CGG 0.455678 1_2:+72649948 Msa0090570:CDS
GGAGTTGTTGGAGGTTATGA+TGG 0.459395 1_2:+72650166 Msa0090570:CDS
TGTGAAGTCGGAGAAATTAA+CGG 0.460050 1_2:+72649671 Msa0090570:CDS
GAAACTCTACGAGATCATTT+CGG 0.461175 1_2:+72649831 Msa0090570:CDS
GAAATGATCTCGTAGAGTTT+CGG 0.461770 1_2:-72649829 None:intergenic
ACTTCCACTAATGGAGGCAT+TGG 0.465464 1_2:+72651465 Msa0090570:CDS
TGTGGAGGAGGGAAAATTGC+CGG 0.467382 1_2:+72649980 Msa0090570:CDS
TAAATCTGGGTCCATATACT+TGG 0.467765 1_2:-72651966 None:intergenic
TTCTGTGGGGAGTCCGAAGA+TGG 0.470996 1_2:+72650115 Msa0090570:CDS
CGATCAGCACGATCAAAGAA+AGG 0.475367 1_2:-72650221 None:intergenic
AGGGACCTACCTCTCATGAA+TGG 0.475641 1_2:+72650952 Msa0090570:CDS
TCTTGTTGAACATGTTAGCC+TGG 0.476391 1_2:+72651810 Msa0090570:three_prime_UTR
ACATTTCAAGGAAGAGGAAG+TGG 0.480483 1_2:+72651438 Msa0090570:CDS
ATCACGAGGTAAAGGGGAAA+AGG 0.480917 1_2:-72651898 None:intergenic
ATAGTTAGTAGTTGATGTAA+AGG 0.483860 1_2:-72649569 None:intergenic
GAGAAGCTATTCGGAGTTGT+TGG 0.486257 1_2:+72650154 Msa0090570:CDS
TTGGTTTGGTGTTAGCTTCG+AGG 0.488775 1_2:-72649462 None:intergenic
ATGTTGATTTATGCGTGGTT+TGG 0.490192 1_2:-72649415 None:intergenic
TTTGTTATATTGCATGTGTT+GGG 0.494290 1_2:+72652013 Msa0090570:three_prime_UTR
CAAACAACATTTCAAGGAAG+AGG 0.495491 1_2:+72651432 Msa0090570:CDS
TTCTCTCACTTTAACACGGT+CGG 0.496702 1_2:+72649490 Msa0090570:five_prime_UTR
CTTCGAGGTCAAGCTCTGAA+TGG 0.505137 1_2:-72649447 None:intergenic
AATTTGGTGACGGTGGGCGG+CGG 0.505401 1_2:+72649951 Msa0090570:CDS
ACTCTCTAAAGCTGCAAAAG+AGG 0.507660 1_2:+72650921 Msa0090570:CDS
TACCTATGTCTACCAGGTAG+TGG 0.509294 1_2:+72652066 Msa0090570:three_prime_UTR
GGGACCTACCTCTCATGAAT+GGG 0.511931 1_2:+72650953 Msa0090570:CDS
CCGAAAGTGTTACGGGTTCG+CGG 0.512674 1_2:+72649892 Msa0090570:CDS
GAATGTCCCATATCATGTGC+TGG 0.513454 1_2:-72651789 None:intergenic
TTTCCGAATTTGGTGACGGT+GGG 0.517929 1_2:+72649945 Msa0090570:CDS
GCAGTGCAAACAACATTTCA+AGG 0.524181 1_2:+72651426 Msa0090570:CDS
CTCGTCACCGTCACCATCAC+CGG 0.526092 1_2:-72649999 None:intergenic
TCTCGTAGAGTTTCGGATGA+AGG 0.530435 1_2:-72649822 None:intergenic
GTGCTGTATAATCCAAATTA+CGG 0.530603 1_2:+72649517 Msa0090570:five_prime_UTR
GGCGGTGGTGGTGTGGAGGA+GGG 0.536524 1_2:+72649969 Msa0090570:CDS
CGAAAGTGTTACGGGTTCGC+GGG 0.537233 1_2:+72649893 Msa0090570:CDS
TATGTTGTGGCATGTGGAGA+GGG 0.538481 1_2:+72650037 Msa0090570:CDS
AAAGAAATCATCAAATCTGT+TGG 0.539406 1_2:+72650979 Msa0090570:CDS
TTCTTTGATCGTGCTGATCG+AGG 0.540804 1_2:+72650224 Msa0090570:CDS
CTGCAAAAGAGGAACATGCT+AGG 0.545050 1_2:+72650932 Msa0090570:CDS
AAGCACCCAGCACATGATAT+GGG 0.547676 1_2:+72651783 Msa0090570:three_prime_UTR
GGAGGGAAAATTGCCGGTGA+TGG 0.548850 1_2:+72649986 Msa0090570:CDS
TCGTGATGCTATGAAGTACT+TGG 0.552466 1_2:+72651591 Msa0090570:CDS
TGCAAAAGAGGAACATGCTA+GGG 0.553726 1_2:+72650933 Msa0090570:CDS
AGGAACGAAATCCAATGAAA+CGG 0.556095 1_2:-72649802 None:intergenic
TGTTACGGGTTCGCGGGAGA+AGG 0.558314 1_2:+72649899 Msa0090570:CDS
AAGCTATTCGGAGTTGTTGG+AGG 0.559085 1_2:+72650157 Msa0090570:CDS
AAGGCTGTTGATCCTTCTGT+GGG 0.559583 1_2:+72650101 Msa0090570:CDS
GGAGTCCGAAGATGGAGATA+AGG 0.561789 1_2:+72650123 Msa0090570:CDS
AAAGGCTGTTGATCCTTCTG+TGG 0.562005 1_2:+72650100 Msa0090570:CDS
GTTCCCCTAATCAAAAGGCC+AGG 0.564032 1_2:-72651828 None:intergenic
GGATATCATTTGGAAGAGTA+GGG 0.564366 1_2:+72651862 Msa0090570:three_prime_UTR
AGATCATTTCGGATCCGACC+CGG 0.564462 1_2:+72649842 Msa0090570:CDS
TTATATTGCATGTGTTGGGT+AGG 0.565276 1_2:+72652017 Msa0090570:three_prime_UTR
ATTTCTTACCTATGTCTACC+AGG 0.567823 1_2:+72652060 Msa0090570:three_prime_UTR
ACAAGGCCTCTTGAAAATCA+GGG 0.569588 1_2:-72651020 None:intergenic
GCGGTTTCCGAATTTGGTGA+CGG 0.571307 1_2:+72649941 Msa0090570:CDS
GTTTCCGAATTTGGTGACGG+TGG 0.573026 1_2:+72649944 Msa0090570:CDS
GAAGAGTGACGTGTCCATCC+GGG 0.576363 1_2:-72649860 None:intergenic
TGATCCCATTCATGAGAGGT+AGG 0.576581 1_2:-72650957 None:intergenic
GATCAGCACGATCAAAGAAA+GGG 0.577300 1_2:-72650220 None:intergenic
GAACCGTATAAACGGACGGT+TGG 0.580668 1_2:-72649729 None:intergenic
ATCTTCGGACTCCCCACAGA+AGG 0.580779 1_2:-72650113 None:intergenic
GAAGGTGTTGCGGTTTATGG+AGG 0.583239 1_2:+72649917 Msa0090570:CDS
GGACACGTCACTCTTCAAGT+TGG 0.588350 1_2:+72649867 Msa0090570:CDS
TAAGAGTATGTTGTGGCATG+TGG 0.595830 1_2:+72650031 Msa0090570:CDS
TATGATGGAACATGCTCGGA+TGG 0.599363 1_2:+72650181 Msa0090570:CDS
GGATTTACTTCCACTAATGG+AGG 0.600208 1_2:+72651459 Msa0090570:CDS
GCGAGCAGAAAGATTATACA+AGG 0.601678 1_2:-72651037 None:intergenic
ACATCACATGAGCCACTACC+TGG 0.608065 1_2:-72652078 None:intergenic
GATCTGATGCATGGAACACA+CGG 0.611566 1_2:+72651532 Msa0090570:CDS
CAAACTATCACGAGGTAAAG+GGG 0.619054 1_2:-72651904 None:intergenic
CATTTCGGATCCGACCCGGA+TGG 0.625020 1_2:+72649846 Msa0090570:CDS
TCACTTTAACACGGTCGGTG+TGG 0.629253 1_2:+72649495 Msa0090570:five_prime_UTR
AGCCACTACCTGGTAGACAT+AGG 0.631630 1_2:-72652068 None:intergenic
AGGATCTTGTGAAACGTGGA+GGG 0.632842 1_2:+72650075 Msa0090570:CDS
ACATCCACATGGATGAGCTG+TGG 0.639096 1_2:+72651700 Msa0090570:three_prime_UTR
GAGGATCTTGTGAAACGTGG+AGG 0.639878 1_2:+72650074 Msa0090570:CDS
CGGTGATGGTGACGGTGACG+AGG 0.640427 1_2:+72650000 Msa0090570:CDS
GTATGTTGTGGCATGTGGAG+AGG 0.640566 1_2:+72650036 Msa0090570:CDS
TCTTTGATCCCATTCATGAG+AGG 0.644723 1_2:-72650961 None:intergenic
TAGACTTTAGCTACGTCGCG+AGG 0.645767 1_2:-72649705 None:intergenic
TGGTGAACCGTATAAACGGA+CGG 0.648385 1_2:-72649733 None:intergenic
AACTTACCAGCAATAACTTG+AGG 0.649400 1_2:-72651059 None:intergenic
AGGTTATGATGGAACATGCT+CGG 0.651869 1_2:+72650177 Msa0090570:CDS
AATGTCCCATATCATGTGCT+GGG 0.652891 1_2:-72651788 None:intergenic
AAAATTGCCGGTGATGGTGA+CGG 0.654372 1_2:+72649992 Msa0090570:CDS
GTTCGCGGGAGAAGGTGTTG+CGG 0.658726 1_2:+72649907 Msa0090570:CDS
GCGGAGGATCTTGTGAAACG+TGG 0.670820 1_2:+72650071 Msa0090570:CDS
TCTCTTCTCTCACTTTAACA+CGG 0.673752 1_2:+72649486 Msa0090570:five_prime_UTR
TGCAGCATAAGAGTATGTTG+TGG 0.678190 1_2:+72650024 Msa0090570:CDS
AAGTCCACAGCTCATCCATG+TGG 0.678878 1_2:-72651704 None:intergenic
TGTTGATGTTGATTTATGCG+TGG 0.686496 1_2:-72649420 None:intergenic
AGTGACGTGTCCATCCGGGT+CGG 0.687526 1_2:-72649856 None:intergenic
TGTTGCGGTTTATGGAGGCG+CGG 0.691904 1_2:+72649922 Msa0090570:CDS
TACTTGGATGTACATTACAG+AGG 0.703147 1_2:-72651950 None:intergenic
AGGCTGTTGATCCTTCTGTG+GGG 0.744546 1_2:+72650102 Msa0090570:CDS
AAGTACTTCATAGCATCACG+AGG 0.752222 1_2:-72651589 None:intergenic
GCCTTATCCAAACTATCACG+AGG 0.755117 1_2:-72651912 None:intergenic
GAAGTCGGAGAAATTAACGG+CGG 0.794619 1_2:+72649674 Msa0090570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATAAATCTTTTTTTTTTT+TGG - chr1_2:72650551-72650570 None:intergenic 10.0%
!!! CATTAATTAATTTTAATTTC+AGG + chr1_2:72650662-72650681 Msa0090570:intron 10.0%
!!! AATTTTATGTGTTTTTTAAA+TGG + chr1_2:72651371-72651390 Msa0090570:intron 10.0%
!!! ATTTTATGTGTTTTTTAAAT+GGG + chr1_2:72651372-72651391 Msa0090570:intron 10.0%
!!! TTTTTTAGTCTATTTATTTT+TGG + chr1_2:72651757-72651776 Msa0090570:three_prime_UTR 10.0%
!! TTATTAGTAAAAAGAAGAAA+TGG - chr1_2:72650253-72650272 None:intergenic 15.0%
!! AAACACTTATTTGAAAATTA+AGG - chr1_2:72650764-72650783 None:intergenic 15.0%
!!! TGTAAGTAATTTTTTCATTT+TGG + chr1_2:72650790-72650809 Msa0090570:intron 15.0%
!!! GTAAGTAATTTTTTCATTTT+GGG + chr1_2:72650791-72650810 Msa0090570:intron 15.0%
!!! TTATTAAAGTTTTTTCTTGA+AGG + chr1_2:72651559-72651578 Msa0090570:CDS 15.0%
!!! TATTAAAGTTTTTTCTTGAA+GGG + chr1_2:72651560-72651579 Msa0090570:CDS 15.0%
!! CAATTTCATATAGTTCATTT+AGG - chr1_2:72650290-72650309 None:intergenic 20.0%
!!! ATCTTTTTTTTTTTTGGTAG+TGG - chr1_2:72650545-72650564 None:intergenic 20.0%
!!! TGTATGTGTTATGTTTTAAT+TGG + chr1_2:72650598-72650617 Msa0090570:intron 20.0%
!! TTGTATTTATGTAAAAGAGA+TGG + chr1_2:72650627-72650646 Msa0090570:intron 20.0%
!! TGTATTTATGTAAAAGAGAT+GGG + chr1_2:72650628-72650647 Msa0090570:intron 20.0%
!!! TGTGCATTTATTTATCTTTT+GGG + chr1_2:72650884-72650903 Msa0090570:intron 20.0%
!!! AATAGTTACTTTATTCATGT+CGG - chr1_2:72651204-72651223 None:intergenic 20.0%
!! ATTAACTGTAAATATGCTAT+TGG - chr1_2:72651338-72651357 None:intergenic 20.0%
!!! TTTAGTCTATTTATTTTTGG+TGG + chr1_2:72651760-72651779 Msa0090570:three_prime_UTR 20.0%
!!! ATGTACTTTTGAATAAATCT+GGG - chr1_2:72651982-72652001 None:intergenic 20.0%
!! ATAGTTAGTAGTTGATGTAA+AGG - chr1_2:72649572-72649591 None:intergenic 25.0%
!! TAAGTAGTGAGAATACTTTT+TGG - chr1_2:72649756-72649775 None:intergenic 25.0%
!! TTCATTTAGGACTTAATTGA+TGG - chr1_2:72650277-72650296 None:intergenic 25.0%
! ACAATGCATAAAAATATGCA+AGG + chr1_2:72650500-72650519 Msa0090570:intron 25.0%
!!! TTTTTTTTTTTGGTAGTGGT+CGG - chr1_2:72650541-72650560 None:intergenic 25.0%
!! GTGTGCATTTATTTATCTTT+TGG + chr1_2:72650883-72650902 Msa0090570:intron 25.0%
! AAAGAAATCATCAAATCTGT+TGG + chr1_2:72650979-72650998 Msa0090570:CDS 25.0%
! TCTCACTTAACTCAATTTAT+AGG + chr1_2:72651229-72651248 Msa0090570:intron 25.0%
! ACAGATTAACAAAGAAATCA+AGG - chr1_2:72651398-72651417 None:intergenic 25.0%
! TCTTTCACTTAACTATCATT+TGG - chr1_2:72651663-72651682 None:intergenic 25.0%
! AAAAAAGTAGGGATATCATT+TGG + chr1_2:72651852-72651871 Msa0090570:three_prime_UTR 25.0%
!! CATGTACTTTTGAATAAATC+TGG - chr1_2:72651983-72652002 None:intergenic 25.0%
!! TTTGTTATATTGCATGTGTT+GGG + chr1_2:72652013-72652032 Msa0090570:three_prime_UTR 25.0%
TTAAAGTGAGAGAAGAGATT+TGG - chr1_2:72649484-72649503 None:intergenic 30.0%
GTGCTGTATAATCCAAATTA+CGG + chr1_2:72649517-72649536 Msa0090570:five_prime_UTR 30.0%
ATTGGAGATTAGTGAATGAA+TGG - chr1_2:72649605-72649624 None:intergenic 30.0%
!! TTTTTGGTGAACCGTATAAA+CGG - chr1_2:72649740-72649759 None:intergenic 30.0%
AATTTCCTTATCTCCATCTT+CGG - chr1_2:72650131-72650150 None:intergenic 30.0%
!!! TTTTTTTTTTGGTAGTGGTC+GGG - chr1_2:72650540-72650559 None:intergenic 30.0%
! TAACCGTGCTAGAAAATTTT+AGG + chr1_2:72650692-72650711 Msa0090570:intron 30.0%
! AACCGTGCTAGAAAATTTTA+GGG + chr1_2:72650693-72650712 Msa0090570:intron 30.0%
!!! TTCATTTTGGGTAACTTGTT+TGG + chr1_2:72650803-72650822 Msa0090570:intron 30.0%
!! TTGTCTTTGAAGTAATGCTA+CGG + chr1_2:72650858-72650877 Msa0090570:intron 30.0%
!! TCTTTTGGGAAAAAAAATGC+AGG + chr1_2:72650898-72650917 Msa0090570:intron 30.0%
TTCTTTGTTAATCTGTCATC+AGG + chr1_2:72651402-72651421 Msa0090570:intron 30.0%
TCTTTGTTAATCTGTCATCA+GGG + chr1_2:72651403-72651422 Msa0090570:intron 30.0%
!!! GCATCGATTCTATTTTATCT+TGG - chr1_2:72651639-72651658 None:intergenic 30.0%
! TTTTAATCATCACATCCACA+TGG + chr1_2:72651689-72651708 Msa0090570:three_prime_UTR 30.0%
! TTTTTGTTCCCCTAATCAAA+AGG - chr1_2:72651836-72651855 None:intergenic 30.0%
ATTAGGGGAACAAAAAAAGT+AGG + chr1_2:72651840-72651859 Msa0090570:three_prime_UTR 30.0%
TTAGGGGAACAAAAAAAGTA+GGG + chr1_2:72651841-72651860 Msa0090570:three_prime_UTR 30.0%
GTAATGTACATCCAAGTATA+TGG + chr1_2:72651955-72651974 Msa0090570:three_prime_UTR 30.0%
! TCAAAAGTACATGAGTTTAC+TGG + chr1_2:72651990-72652009 Msa0090570:three_prime_UTR 30.0%
!! GTTTGTTATATTGCATGTGT+TGG + chr1_2:72652012-72652031 Msa0090570:three_prime_UTR 30.0%
!! TGTTGATGTTGATTTATGCG+TGG - chr1_2:72649423-72649442 None:intergenic 35.0%
TCTCTTCTCTCACTTTAACA+CGG + chr1_2:72649486-72649505 Msa0090570:five_prime_UTR 35.0%
TTGAAAACGACACCGTAATT+TGG - chr1_2:72649532-72649551 None:intergenic 35.0%
TGTGAAGTCGGAGAAATTAA+CGG + chr1_2:72649671-72649690 Msa0090570:CDS 35.0%
TCTTCACAAATCCGTTTCAT+TGG + chr1_2:72649791-72649810 Msa0090570:CDS 35.0%
AGGAACGAAATCCAATGAAA+CGG - chr1_2:72649805-72649824 None:intergenic 35.0%
GAAATGATCTCGTAGAGTTT+CGG - chr1_2:72649832-72649851 None:intergenic 35.0%
GAAACTCTACGAGATCATTT+CGG + chr1_2:72649831-72649850 Msa0090570:CDS 35.0%
GCATAAAAATATGCAAGGTC+CGG + chr1_2:72650505-72650524 Msa0090570:intron 35.0%
CATAAAAATATGCAAGGTCC+GGG + chr1_2:72650506-72650525 Msa0090570:intron 35.0%
ATAAAAATATGCAAGGTCCG+GGG + chr1_2:72650507-72650526 Msa0090570:intron 35.0%
!!! TTTTTTTTTGGTAGTGGTCG+GGG - chr1_2:72650539-72650558 None:intergenic 35.0%
!! GACCCTAAAATTTTCTAGCA+CGG - chr1_2:72650698-72650717 None:intergenic 35.0%
!!! TTTTGGGTAACTTGTTTGGT+AGG + chr1_2:72650807-72650826 Msa0090570:intron 35.0%
!! CATCAAATCTGTTGGTGTTT+TGG + chr1_2:72650987-72651006 Msa0090570:CDS 35.0%
AACTTACCAGCAATAACTTG+AGG - chr1_2:72651062-72651081 None:intergenic 35.0%
! CTCTTAGGAATAGCTCATTT+TGG + chr1_2:72651085-72651104 Msa0090570:intron 35.0%
CTTTGTTAATCTGTCATCAG+GGG + chr1_2:72651404-72651423 Msa0090570:intron 35.0%
CAAACAACATTTCAAGGAAG+AGG + chr1_2:72651432-72651451 Msa0090570:CDS 35.0%
! AGTGGATTTACTTCCACTAA+TGG + chr1_2:72651456-72651475 Msa0090570:CDS 35.0%
!!! CAATGTTTTGATCTGATGCA+TGG + chr1_2:72651523-72651542 Msa0090570:CDS 35.0%
GATAGTTAAGTGAAAGATGC+AGG + chr1_2:72651666-72651685 Msa0090570:exon 35.0%
GGATATCATTTGGAAGAGTA+GGG + chr1_2:72651862-72651881 Msa0090570:three_prime_UTR 35.0%
TACTTGGATGTACATTACAG+AGG - chr1_2:72651953-72651972 None:intergenic 35.0%
TAAATCTGGGTCCATATACT+TGG - chr1_2:72651969-72651988 None:intergenic 35.0%
TTATATTGCATGTGTTGGGT+AGG + chr1_2:72652017-72652036 Msa0090570:three_prime_UTR 35.0%
ATTTCTTACCTATGTCTACC+AGG + chr1_2:72652060-72652079 Msa0090570:three_prime_UTR 35.0%
! GTGAGAGAAGAGATTTGGTT+TGG - chr1_2:72649479-72649498 None:intergenic 40.0%
TTCTCTCACTTTAACACGGT+CGG + chr1_2:72649490-72649509 Msa0090570:five_prime_UTR 40.0%
!!! GAAGTTGTTTTGGTTGGGAT+TGG - chr1_2:72649623-72649642 None:intergenic 40.0%
!!! GCAGTGAAGTTGTTTTGGTT+GGG - chr1_2:72649628-72649647 None:intergenic 40.0%
!!! TGCAGTGAAGTTGTTTTGGT+TGG - chr1_2:72649629-72649648 None:intergenic 40.0%
! GTGTTGCAGTGAAGTTGTTT+TGG - chr1_2:72649633-72649652 None:intergenic 40.0%
ACTTCACTGCAACACTCTAA+TGG + chr1_2:72649638-72649657 Msa0090570:exon 40.0%
CTTCACTGCAACACTCTAAT+GGG + chr1_2:72649639-72649658 Msa0090570:exon 40.0%
! GGGAAACTGTTTTGTGAAGT+CGG + chr1_2:72649659-72649678 Msa0090570:CDS 40.0%
TATCCAACCGTCCGTTTATA+CGG + chr1_2:72649726-72649745 Msa0090570:CDS 40.0%
!! AGTTGGATCCGAAAGTGTTA+CGG + chr1_2:72649884-72649903 Msa0090570:CDS 40.0%
! TGCAGCATAAGAGTATGTTG+TGG + chr1_2:72650024-72650043 Msa0090570:CDS 40.0%
! TAAGAGTATGTTGTGGCATG+TGG + chr1_2:72650031-72650050 Msa0090570:CDS 40.0%
GAAATTCGCGAGAAGCTATT+CGG + chr1_2:72650145-72650164 Msa0090570:CDS 40.0%
! AGGTTATGATGGAACATGCT+CGG + chr1_2:72650177-72650196 Msa0090570:CDS 40.0%
GATCAGCACGATCAAAGAAA+GGG - chr1_2:72650223-72650242 None:intergenic 40.0%
AATGCTAAACAGTGCCTTGA+GGG - chr1_2:72650739-72650758 None:intergenic 40.0%
!! ACTCTCTAAAGCTGCAAAAG+AGG + chr1_2:72650921-72650940 Msa0090570:CDS 40.0%
TGCAAAAGAGGAACATGCTA+GGG + chr1_2:72650933-72650952 Msa0090570:CDS 40.0%
TCTTTGATCCCATTCATGAG+AGG - chr1_2:72650964-72650983 None:intergenic 40.0%
ACAAGGCCTCTTGAAAATCA+GGG - chr1_2:72651023-72651042 None:intergenic 40.0%
TACAAGGCCTCTTGAAAATC+AGG - chr1_2:72651024-72651043 None:intergenic 40.0%
GCGAGCAGAAAGATTATACA+AGG - chr1_2:72651040-72651059 None:intergenic 40.0%
TCTAAGAGCGGTTCAAATCA+AGG - chr1_2:72651306-72651325 None:intergenic 40.0%
!! TGGCAGTAATGTTCTAAGAG+CGG - chr1_2:72651318-72651337 None:intergenic 40.0%
GCAGTGCAAACAACATTTCA+AGG + chr1_2:72651426-72651445 Msa0090570:CDS 40.0%
ACATTTCAAGGAAGAGGAAG+TGG + chr1_2:72651438-72651457 Msa0090570:CDS 40.0%
GGATTTACTTCCACTAATGG+AGG + chr1_2:72651459-72651478 Msa0090570:CDS 40.0%
AAGTACTTCATAGCATCACG+AGG - chr1_2:72651592-72651611 None:intergenic 40.0%
! TCGTGATGCTATGAAGTACT+TGG + chr1_2:72651591-72651610 Msa0090570:CDS 40.0%
AATGTCCCATATCATGTGCT+GGG - chr1_2:72651791-72651810 None:intergenic 40.0%
TCTTGTTGAACATGTTAGCC+TGG + chr1_2:72651810-72651829 Msa0090570:three_prime_UTR 40.0%
!! TTAGCCTGGCCTTTTGATTA+GGG + chr1_2:72651824-72651843 Msa0090570:three_prime_UTR 40.0%
GGGATATCATTTGGAAGAGT+AGG + chr1_2:72651861-72651880 Msa0090570:three_prime_UTR 40.0%
CAAACTATCACGAGGTAAAG+GGG - chr1_2:72651907-72651926 None:intergenic 40.0%
CCAAACTATCACGAGGTAAA+GGG - chr1_2:72651908-72651927 None:intergenic 40.0%
TCCAAACTATCACGAGGTAA+AGG - chr1_2:72651909-72651928 None:intergenic 40.0%
ACCTCGTGATAGTTTGGATA+AGG + chr1_2:72651911-72651930 Msa0090570:three_prime_UTR 40.0%
!! TTGGTTTGGTGTTAGCTTCG+AGG - chr1_2:72649465-72649484 None:intergenic 45.0%
GAAGTCGGAGAAATTAACGG+CGG + chr1_2:72649674-72649693 Msa0090570:CDS 45.0%
TGGTGAACCGTATAAACGGA+CGG - chr1_2:72649736-72649755 None:intergenic 45.0%
TCTCGTAGAGTTTCGGATGA+AGG - chr1_2:72649825-72649844 None:intergenic 45.0%
!! GTTGGATCCGAAAGTGTTAC+GGG + chr1_2:72649885-72649904 Msa0090570:CDS 45.0%
!! TTTCCGAATTTGGTGACGGT+GGG + chr1_2:72649945-72649964 Msa0090570:CDS 45.0%
! AAAATTGCCGGTGATGGTGA+CGG + chr1_2:72649992-72650011 Msa0090570:CDS 45.0%
TATGTTGTGGCATGTGGAGA+GGG + chr1_2:72650037-72650056 Msa0090570:CDS 45.0%
AGGATCTTGTGAAACGTGGA+GGG + chr1_2:72650075-72650094 Msa0090570:CDS 45.0%
TGTGAAACGTGGAGGGAAAA+AGG + chr1_2:72650082-72650101 Msa0090570:CDS 45.0%
AAAGGCTGTTGATCCTTCTG+TGG + chr1_2:72650100-72650119 Msa0090570:CDS 45.0%
AAGGCTGTTGATCCTTCTGT+GGG + chr1_2:72650101-72650120 Msa0090570:CDS 45.0%
GAGAAGCTATTCGGAGTTGT+TGG + chr1_2:72650154-72650173 Msa0090570:CDS 45.0%
AAGCTATTCGGAGTTGTTGG+AGG + chr1_2:72650157-72650176 Msa0090570:CDS 45.0%
GGAGTTGTTGGAGGTTATGA+TGG + chr1_2:72650166-72650185 Msa0090570:CDS 45.0%
! TATGATGGAACATGCTCGGA+TGG + chr1_2:72650181-72650200 Msa0090570:CDS 45.0%
CGATCAGCACGATCAAAGAA+AGG - chr1_2:72650224-72650243 None:intergenic 45.0%
! TTCTTTGATCGTGCTGATCG+AGG + chr1_2:72650224-72650243 Msa0090570:CDS 45.0%
AACTCTGAGCTTAGCTCAGA+TGG + chr1_2:72650473-72650492 Msa0090570:intron 45.0%
TAACAAGTGTCATGCCCTCA+AGG + chr1_2:72650722-72650741 Msa0090570:intron 45.0%
GAATGCTAAACAGTGCCTTG+AGG - chr1_2:72650740-72650759 None:intergenic 45.0%
! AACTTGTTTGGTAGGCCACT+AGG + chr1_2:72650815-72650834 Msa0090570:intron 45.0%
CTTCCTTTCTCAAAGCCTAG+TGG - chr1_2:72650833-72650852 None:intergenic 45.0%
CTGCAAAAGAGGAACATGCT+AGG + chr1_2:72650932-72650951 Msa0090570:CDS 45.0%
TGATCCCATTCATGAGAGGT+AGG - chr1_2:72650960-72650979 None:intergenic 45.0%
!! TCTGTTGGTGTTTTGGACTC+TGG + chr1_2:72650994-72651013 Msa0090570:CDS 45.0%
!! TGGAAGCCCTGATTTTCAAG+AGG + chr1_2:72651014-72651033 Msa0090570:CDS 45.0%
TGCTGGTAAGTTCAGCTCTT+AGG + chr1_2:72651070-72651089 Msa0090570:intron 45.0%
AAGAGCGGTTCAAATCAAGG+AGG - chr1_2:72651303-72651322 None:intergenic 45.0%
! ACTTCCACTAATGGAGGCAT+TGG + chr1_2:72651465-72651484 Msa0090570:CDS 45.0%
AACTCCAATGCCTCCATTAG+TGG - chr1_2:72651472-72651491 None:intergenic 45.0%
GATCTGATGCATGGAACACA+CGG + chr1_2:72651532-72651551 Msa0090570:CDS 45.0%
AAGCACCCAGCACATGATAT+GGG + chr1_2:72651783-72651802 Msa0090570:three_prime_UTR 45.0%
GAATGTCCCATATCATGTGC+TGG - chr1_2:72651792-72651811 None:intergenic 45.0%
!! GTTAGCCTGGCCTTTTGATT+AGG + chr1_2:72651823-72651842 Msa0090570:three_prime_UTR 45.0%
!! TAGCCTGGCCTTTTGATTAG+GGG + chr1_2:72651825-72651844 Msa0090570:three_prime_UTR 45.0%
ATCACGAGGTAAAGGGGAAA+AGG - chr1_2:72651901-72651920 None:intergenic 45.0%
CCCTTTACCTCGTGATAGTT+TGG + chr1_2:72651905-72651924 Msa0090570:three_prime_UTR 45.0%
GCCTTATCCAAACTATCACG+AGG - chr1_2:72651915-72651934 None:intergenic 45.0%
TACCTATGTCTACCAGGTAG+TGG + chr1_2:72652066-72652085 Msa0090570:three_prime_UTR 45.0%
!!! ATTAATTAATTTTAATTTCA+GGG + chr1_2:72650663-72650682 Msa0090570:intron 5.0%
!! CTTCGAGGTCAAGCTCTGAA+TGG - chr1_2:72649450-72649469 None:intergenic 50.0%
TCACTTTAACACGGTCGGTG+TGG + chr1_2:72649495-72649514 Msa0090570:five_prime_UTR 50.0%
TAGACTTTAGCTACGTCGCG+AGG - chr1_2:72649708-72649727 None:intergenic 50.0%
GAACCGTATAAACGGACGGT+TGG - chr1_2:72649732-72649751 None:intergenic 50.0%
AGATCATTTCGGATCCGACC+CGG + chr1_2:72649842-72649861 Msa0090570:CDS 50.0%
TGAAGAGTGACGTGTCCATC+CGG - chr1_2:72649864-72649883 None:intergenic 50.0%
GGACACGTCACTCTTCAAGT+TGG + chr1_2:72649867-72649886 Msa0090570:CDS 50.0%
!! GGAGAAGGTGTTGCGGTTTA+TGG + chr1_2:72649914-72649933 Msa0090570:CDS 50.0%
!! GAAGGTGTTGCGGTTTATGG+AGG + chr1_2:72649917-72649936 Msa0090570:CDS 50.0%
! GCGGTTTCCGAATTTGGTGA+CGG + chr1_2:72649941-72649960 Msa0090570:CDS 50.0%
!! GTTTCCGAATTTGGTGACGG+TGG + chr1_2:72649944-72649963 Msa0090570:CDS 50.0%
TGTGGAGGAGGGAAAATTGC+CGG + chr1_2:72649980-72649999 Msa0090570:CDS 50.0%
GTATGTTGTGGCATGTGGAG+AGG + chr1_2:72650036-72650055 Msa0090570:CDS 50.0%
!!! ATGTGGAGAGGGTTTTGAGG+TGG + chr1_2:72650048-72650067 Msa0090570:CDS 50.0%
!!! TGTGGAGAGGGTTTTGAGGT+GGG + chr1_2:72650049-72650068 Msa0090570:CDS 50.0%
GAGGATCTTGTGAAACGTGG+AGG + chr1_2:72650074-72650093 Msa0090570:CDS 50.0%
AGGCTGTTGATCCTTCTGTG+GGG + chr1_2:72650102-72650121 Msa0090570:CDS 50.0%
GGAGTCCGAAGATGGAGATA+AGG + chr1_2:72650123-72650142 Msa0090570:CDS 50.0%
CTGAGCTTAGCTCAGATGGT+TGG + chr1_2:72650477-72650496 Msa0090570:intron 50.0%
!! AGGCCACTAGGCTTTGAGAA+AGG + chr1_2:72650827-72650846 Msa0090570:intron 50.0%
AGGGACCTACCTCTCATGAA+TGG + chr1_2:72650952-72650971 Msa0090570:CDS 50.0%
GGGACCTACCTCTCATGAAT+GGG + chr1_2:72650953-72650972 Msa0090570:CDS 50.0%
TGCTCGCCTCAAGTTATTGC+TGG + chr1_2:72651053-72651072 Msa0090570:CDS 50.0%
ACATCCACATGGATGAGCTG+TGG + chr1_2:72651700-72651719 Msa0090570:three_prime_UTR 50.0%
AAGTCCACAGCTCATCCATG+TGG - chr1_2:72651707-72651726 None:intergenic 50.0%
! GAAGCACCCAGCACATGATA+TGG + chr1_2:72651782-72651801 Msa0090570:three_prime_UTR 50.0%
GTTCCCCTAATCAAAAGGCC+AGG - chr1_2:72651831-72651850 None:intergenic 50.0%
GAAGAGTGACGTGTCCATCC+GGG - chr1_2:72649863-72649882 None:intergenic 55.0%
CCGCGAACCCGTAACACTTT+CGG - chr1_2:72649895-72649914 None:intergenic 55.0%
!! CCGAAAGTGTTACGGGTTCG+CGG + chr1_2:72649892-72649911 Msa0090570:CDS 55.0%
!! CGAAAGTGTTACGGGTTCGC+GGG + chr1_2:72649893-72649912 Msa0090570:CDS 55.0%
TGTTGCGGTTTATGGAGGCG+CGG + chr1_2:72649922-72649941 Msa0090570:CDS 55.0%
GGAGGGAAAATTGCCGGTGA+TGG + chr1_2:72649986-72650005 Msa0090570:CDS 55.0%
! GGCATGTGGAGAGGGTTTTG+AGG + chr1_2:72650045-72650064 Msa0090570:CDS 55.0%
GCGGAGGATCTTGTGAAACG+TGG + chr1_2:72650071-72650090 Msa0090570:CDS 55.0%
ATCTTCGGACTCCCCACAGA+AGG - chr1_2:72650116-72650135 None:intergenic 55.0%
TTCTGTGGGGAGTCCGAAGA+TGG + chr1_2:72650115-72650134 Msa0090570:CDS 55.0%
CATTTCGGATCCGACCCGGA+TGG + chr1_2:72649846-72649865 Msa0090570:CDS 60.0%
AGTGACGTGTCCATCCGGGT+CGG - chr1_2:72649859-72649878 None:intergenic 60.0%
TGTTACGGGTTCGCGGGAGA+AGG + chr1_2:72649899-72649918 Msa0090570:CDS 60.0%
!! GTTCGCGGGAGAAGGTGTTG+CGG + chr1_2:72649907-72649926 Msa0090570:CDS 60.0%
! GGAGGCGCGGTTTCCGAATT+TGG + chr1_2:72649935-72649954 Msa0090570:CDS 60.0%
CCGCCCACCGTCACCAAATT+CGG - chr1_2:72649951-72649970 None:intergenic 60.0%
!! CCGAATTTGGTGACGGTGGG+CGG + chr1_2:72649948-72649967 Msa0090570:CDS 60.0%
!! AATTTGGTGACGGTGGGCGG+CGG + chr1_2:72649951-72649970 Msa0090570:CDS 60.0%
CTCGTCACCGTCACCATCAC+CGG - chr1_2:72650002-72650021 None:intergenic 60.0%
!!! GGAGAGGGTTTTGAGGTGGG+CGG + chr1_2:72650052-72650071 Msa0090570:CDS 60.0%
AGTGGTCGGGGTTTGAACCC+CGG - chr1_2:72650527-72650546 None:intergenic 60.0%
!! CGGTGATGGTGACGGTGACG+AGG + chr1_2:72650000-72650019 Msa0090570:CDS 65.0%
!!! GAGGGTTTTGAGGTGGGCGG+AGG + chr1_2:72650055-72650074 Msa0090570:CDS 65.0%
! GGCGGTGGTGGTGTGGAGGA+GGG + chr1_2:72649969-72649988 Msa0090570:CDS 70.0%
!! TTGGTGACGGTGGGCGGCGG+TGG + chr1_2:72649954-72649973 Msa0090570:CDS 75.0%
! CGGCGGTGGTGGTGTGGAGG+AGG + chr1_2:72649968-72649987 Msa0090570:CDS 75.0%
! GTGACGGTGGGCGGCGGTGG+TGG + chr1_2:72649957-72649976 Msa0090570:CDS 80.0%
!! GGTGGGCGGCGGTGGTGGTG+TGG + chr1_2:72649962-72649981 Msa0090570:CDS 80.0%
!! GGGCGGCGGTGGTGGTGTGG+AGG + chr1_2:72649965-72649984 Msa0090570:CDS 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 72649417 72652089 72649417 ID=Msa0090570;Name=Msa0090570
chr1_2 mRNA 72649417 72652089 72649417 ID=Msa0090570-mRNA-1;Parent=Msa0090570;Name=Msa0090570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=240|1|1|1|1|1|3|411|332
chr1_2 exon 72649417 72650245 72649417 ID=Msa0090570-mRNA-1:exon:25205;Parent=Msa0090570-mRNA-1
chr1_2 exon 72650920 72651074 72650920 ID=Msa0090570-mRNA-1:exon:25206;Parent=Msa0090570-mRNA-1
chr1_2 exon 72651424 72652089 72651424 ID=Msa0090570-mRNA-1:exon:25207;Parent=Msa0090570-mRNA-1
chr1_2 five_prime_UTR 72649417 72649656 72649417 ID=Msa0090570-mRNA-1:five_prime_utr;Parent=Msa0090570-mRNA-1
chr1_2 CDS 72649657 72650245 72649657 ID=Msa0090570-mRNA-1:cds;Parent=Msa0090570-mRNA-1
chr1_2 CDS 72650920 72651074 72650920 ID=Msa0090570-mRNA-1:cds;Parent=Msa0090570-mRNA-1
chr1_2 CDS 72651424 72651678 72651424 ID=Msa0090570-mRNA-1:cds;Parent=Msa0090570-mRNA-1
chr1_2 three_prime_UTR 72651679 72652089 72651679 ID=Msa0090570-mRNA-1:three_prime_utr;Parent=Msa0090570-mRNA-1
Gene Sequence

>Msa0090570

ATGGGAAACTGTTTTGTGAAGTCGGAGAAATTAACGGCGGAGATTATACCTCGCGACGTAGCTAAAGTCTATCCAACCGTCCGTTTATACGGTTCACCAAAAAGTATTCTCACTACTTACATTCGTTTCGCTCTTCTTCACAAATCCGTTTCATTGGATTTCGTTCCTTCATCCGAAACTCTACGAGATCATTTCGGATCCGACCCGGATGGACACGTCACTCTTCAAGTTGGATCCGAAAGTGTTACGGGTTCGCGGGAGAAGGTGTTGCGGTTTATGGAGGCGCGGTTTCCGAATTTGGTGACGGTGGGCGGCGGTGGTGGTGTGGAGGAGGGAAAATTGCCGGTGATGGTGACGGTGACGAGGTTGCAGCATAAGAGTATGTTGTGGCATGTGGAGAGGGTTTTGAGGTGGGCGGAGGATCTTGTGAAACGTGGAGGGAAAAAGGCTGTTGATCCTTCTGTGGGGAGTCCGAAGATGGAGATAAGGAAATTCGCGAGAAGCTATTCGGAGTTGTTGGAGGTTATGATGGAACATGCTCGGATGGAAGAGACTCTTCTCTTCCCTTTCTTTGATCGTGCTGATCGAGGACTCTCTAAAGCTGCAAAAGAGGAACATGCTAGGGACCTACCTCTCATGAATGGGATCAAAGAAATCATCAAATCTGTTGGTGTTTTGGACTCTGGAAGCCCTGATTTTCAAGAGGCCTTGTATAATCTTTCTGCTCGCCTCAAGTTATTGCTGGGGCAGTGCAAACAACATTTCAAGGAAGAGGAAGTGGATTTACTTCCACTAATGGAGGCATTGGAGTTAAGCAAAGATCAAGAAGAGACTGCACTAGATCAATGTTTTGATCTGATGCATGGAACACACGGTCGTTTATTAAAGTTTTTTCTTGAAGGGCTTCAACCTCGTGATGCTATGAAGTACTTGGACTTGATTAGCATGTGTAGTAACCAAGATAAAATAGAATCGATGCTCCAAATGATAGTTAAGTGA

Protein sequence

>Msa0090570

MGNCFVKSEKLTAEIIPRDVAKVYPTVRLYGSPKSILTTYIRFALLHKSVSLDFVPSSETLRDHFGSDPDGHVTLQVGSESVTGSREKVLRFMEARFPNLVTVGGGGGVEEGKLPVMVTVTRLQHKSMLWHVERVLRWAEDLVKRGGKKAVDPSVGSPKMEIRKFARSYSELLEVMMEHARMEETLLFPFFDRADRGLSKAAKEEHARDLPLMNGIKEIIKSVGVLDSGSPDFQEALYNLSARLKLLLGQCKQHFKEEEVDLLPLMEALELSKDQEETALDQCFDLMHGTHGRLLKFFLEGLQPRDAMKYLDLISMCSNQDKIESMLQMIVK*