Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371300 | XP_024633382.1 | 94.690 | 678 | 35 | 1 | 1 | 677 | 1 | 678 | 0.0 | 1312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371300 | sp|Q9SUU1|BOR7_ARATH | 68.203 | 651 | 194 | 4 | 4 | 642 | 7 | 656 | 0.0 | 927 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371300 | G7JBM4 | 94.690 | 678 | 35 | 1 | 1 | 677 | 1 | 678 | 0.0 | 1312 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1371300 | 0.810082 | 1.375233e-50 | -8.615850e-47 |
| Msa1363070 | Msa1371300 | -0.802697 | 4.960498e-49 | -8.615850e-47 |
| Msa1371300 | Msa1386250 | -0.810281 | 1.245887e-50 | -8.615850e-47 |
| Msa1371300 | Msa1460530 | -0.840128 | 1.047696e-57 | -8.615850e-47 |
| Msa0647320 | Msa1371300 | 0.816304 | 5.924344e-52 | -8.615850e-47 |
| Msa0749150 | Msa1371300 | -0.823198 | 1.575878e-53 | -8.615850e-47 |
| Msa0792880 | Msa1371300 | -0.816429 | 5.556040e-52 | -8.615850e-47 |
| Msa0803530 | Msa1371300 | -0.814694 | 1.352036e-51 | -8.615850e-47 |
| Msa0828900 | Msa1371300 | -0.821147 | 4.712821e-53 | -8.615850e-47 |
| Msa0143280 | Msa1371300 | -0.816326 | 5.859684e-52 | -8.615850e-47 |
| Msa0180100 | Msa1371300 | -0.839221 | 1.803612e-57 | -8.615850e-47 |
| Msa0183200 | Msa1371300 | -0.802446 | 5.587850e-49 | -8.615850e-47 |
| Msa0184510 | Msa1371300 | -0.856856 | 2.423765e-62 | -8.615850e-47 |
| Msa0207680 | Msa1371300 | 0.835311 | 1.807006e-56 | -8.615850e-47 |
| Msa0209360 | Msa1371300 | 0.810366 | 1.194738e-50 | -8.615850e-47 |
| Msa0236940 | Msa1371300 | 0.815190 | 1.049820e-51 | -8.615850e-47 |
| Msa1236860 | Msa1371300 | -0.806867 | 6.676273e-50 | -8.615850e-47 |
| Msa1297220 | Msa1371300 | -0.800056 | 1.723757e-48 | -8.615850e-47 |
| Msa1323260 | Msa1371300 | -0.800313 | 1.528311e-48 | -8.615850e-47 |
| Msa1325470 | Msa1371300 | 0.800013 | 1.758650e-48 | -8.615850e-47 |
| Msa1333210 | Msa1371300 | 0.852990 | 3.212077e-61 | -8.615850e-47 |
| Msa1343450 | Msa1371300 | -0.812844 | 3.454610e-51 | -8.615850e-47 |
| Msa0378310 | Msa1371300 | -0.811747 | 5.996234e-51 | -8.615850e-47 |
| Msa0382860 | Msa1371300 | 0.986104 | 1.093311e-165 | -8.615850e-47 |
| Msa0414250 | Msa1371300 | -0.808717 | 2.699778e-50 | -8.615850e-47 |
| Msa0432940 | Msa1371300 | 0.989156 | 6.308531e-177 | -8.615850e-47 |
| Msa0432970 | Msa1371300 | 0.990132 | 3.316188e-181 | -8.615850e-47 |
| Msa0436840 | Msa1371300 | 0.808969 | 2.384819e-50 | -8.615850e-47 |
| Msa0474570 | Msa1371300 | 0.814828 | 1.262773e-51 | -8.615850e-47 |
| Msa0477030 | Msa1371300 | 0.975460 | 5.407395e-140 | -8.615850e-47 |
| Msa1024570 | Msa1371300 | 0.819400 | 1.184832e-52 | -8.615850e-47 |
| Msa1031180 | Msa1371300 | 0.831442 | 1.665580e-55 | -8.615850e-47 |
| Msa1031530 | Msa1371300 | -0.807173 | 5.752053e-50 | -8.615850e-47 |
| Msa1040380 | Msa1371300 | 0.802308 | 5.967347e-49 | -8.615850e-47 |
| Msa1070360 | Msa1371300 | 0.859627 | 3.627810e-63 | -8.615850e-47 |
| Msa0275560 | Msa1371300 | 0.835137 | 1.999075e-56 | -8.615850e-47 |
| Msa0295680 | Msa1371300 | 0.841518 | 4.526609e-58 | -8.615850e-47 |
| Msa1117510 | Msa1371300 | -0.831710 | 1.430665e-55 | -8.615850e-47 |
| Msa1119430 | Msa1371300 | 0.836427 | 9.420555e-57 | -8.615850e-47 |
| Msa1125450 | Msa1371300 | -0.813169 | 2.931970e-51 | -8.615850e-47 |
| Msa1127910 | Msa1371300 | 0.800532 | 1.379028e-48 | -8.615850e-47 |
| Msa1161210 | Msa1371300 | -0.809390 | 1.937803e-50 | -8.615850e-47 |
| Msa1164570 | Msa1371300 | -0.812046 | 5.162638e-51 | -8.615850e-47 |
| Msa1219540 | Msa1371300 | 0.803589 | 3.243995e-49 | -8.615850e-47 |
| Msa0931550 | Msa1371300 | -0.829098 | 6.225413e-55 | -8.615850e-47 |
| Msa0950470 | Msa1371300 | -0.825483 | 4.573882e-54 | -8.615850e-47 |
| Msa0950570 | Msa1371300 | -0.821891 | 3.172089e-53 | -8.615850e-47 |
| Msa0976490 | Msa1371300 | 0.806355 | 8.565635e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371300 | MtrunA17_Chr3g0138161 | 94.690 | 678 | 35 | 1 | 1 | 677 | 1 | 678 | 0.0 | 1312 |
| Msa1371300 | MtrunA17_Chr1g0148971 | 76.006 | 646 | 146 | 3 | 3 | 642 | 19 | 661 | 0.0 | 1004 |
| Msa1371300 | MtrunA17_Chr2g0332331 | 68.037 | 657 | 200 | 5 | 4 | 654 | 11 | 663 | 0.0 | 901 |
| Msa1371300 | MtrunA17_Chr2g0332351 | 68.664 | 651 | 194 | 5 | 4 | 648 | 11 | 657 | 0.0 | 900 |
| Msa1371300 | MtrunA17_Chr2g0332471 | 69.147 | 645 | 189 | 5 | 4 | 642 | 11 | 651 | 0.0 | 897 |
| Msa1371300 | MtrunA17_Chr2g0332441 | 70.537 | 577 | 164 | 3 | 39 | 609 | 2 | 578 | 0.0 | 830 |
| Msa1371300 | MtrunA17_Chr2g0332491 | 62.128 | 639 | 159 | 4 | 4 | 642 | 11 | 566 | 0.0 | 773 |
| Msa1371300 | MtrunA17_Chr7g0270341 | 59.480 | 654 | 242 | 5 | 4 | 643 | 7 | 651 | 0.0 | 765 |
| Msa1371300 | MtrunA17_Chr2g0293661 | 57.562 | 648 | 254 | 4 | 4 | 639 | 7 | 645 | 0.0 | 763 |
| Msa1371300 | MtrunA17_Chr3g0117521 | 58.923 | 650 | 245 | 7 | 4 | 639 | 7 | 648 | 0.0 | 749 |
| Msa1371300 | MtrunA17_Chr2g0332391 | 65.805 | 348 | 113 | 3 | 172 | 513 | 1 | 348 | 5.18e-166 | 479 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1371300 | AT4G32510.1 | 68.203 | 651 | 194 | 4 | 4 | 642 | 7 | 656 | 0.0 | 927 |
| Msa1371300 | AT4G32510.2 | 68.203 | 651 | 194 | 4 | 4 | 642 | 7 | 656 | 0.0 | 927 |
| Msa1371300 | AT5G25430.1 | 66.410 | 649 | 212 | 2 | 3 | 646 | 8 | 655 | 0.0 | 917 |
| Msa1371300 | AT1G15460.2 | 66.667 | 648 | 200 | 3 | 5 | 642 | 13 | 654 | 0.0 | 906 |
| Msa1371300 | AT1G15460.1 | 66.667 | 648 | 200 | 3 | 5 | 642 | 13 | 654 | 0.0 | 906 |
| Msa1371300 | AT1G74810.7 | 65.794 | 649 | 206 | 4 | 4 | 642 | 12 | 654 | 0.0 | 881 |
| Msa1371300 | AT1G74810.4 | 65.794 | 649 | 206 | 4 | 4 | 642 | 12 | 654 | 0.0 | 881 |
| Msa1371300 | AT1G74810.1 | 65.794 | 649 | 206 | 4 | 4 | 642 | 12 | 654 | 0.0 | 881 |
| Msa1371300 | AT1G15460.3 | 67.810 | 612 | 187 | 2 | 5 | 606 | 13 | 624 | 0.0 | 872 |
| Msa1371300 | AT1G74810.6 | 65.968 | 620 | 195 | 4 | 33 | 642 | 9 | 622 | 0.0 | 838 |
| Msa1371300 | AT1G74810.3 | 65.968 | 620 | 195 | 4 | 33 | 642 | 9 | 622 | 0.0 | 838 |
| Msa1371300 | AT3G62270.1 | 59.660 | 647 | 241 | 6 | 4 | 639 | 7 | 644 | 0.0 | 784 |
| Msa1371300 | AT2G47160.1 | 60.278 | 647 | 236 | 6 | 4 | 639 | 7 | 643 | 0.0 | 781 |
| Msa1371300 | AT2G47160.2 | 58.036 | 672 | 236 | 7 | 4 | 639 | 7 | 668 | 0.0 | 768 |
| Msa1371300 | AT3G06450.3 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 754 |
| Msa1371300 | AT3G06450.1 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 754 |
| Msa1371300 | AT3G06450.2 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 754 |
| Msa1371300 | AT3G06450.4 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 754 |
| Msa1371300 | AT1G15460.4 | 64.801 | 554 | 179 | 3 | 99 | 642 | 1 | 548 | 0.0 | 752 |
| Msa1371300 | AT1G74810.5 | 63.718 | 554 | 185 | 4 | 99 | 642 | 1 | 548 | 0.0 | 725 |
| Msa1371300 | AT1G74810.2 | 63.636 | 517 | 172 | 4 | 136 | 642 | 1 | 511 | 0.0 | 671 |
Find 209 sgRNAs with CRISPR-Local
Find 316 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACCCGTGATTTATATATT+TGG | 0.189461 | tig0019197:-11460 | Msa1371300:CDS |
| AATTAAAATATAGGAAATAT+TGG | 0.193606 | tig0019197:+13349 | None:intergenic |
| CGAGGCTTTATTGCAGATTA+TGG | 0.224792 | tig0019197:-11882 | Msa1371300:CDS |
| TACCCGTGATTTATATATTT+GGG | 0.228711 | tig0019197:-11459 | Msa1371300:CDS |
| AGAATTGCAGGGGAGTTATT+TGG | 0.243689 | tig0019197:-12334 | Msa1371300:CDS |
| GGAATTATTCACTCAATTAT+AGG | 0.251240 | tig0019197:-12660 | Msa1371300:CDS |
| TAAAATTAAAATTAAAATAT+AGG | 0.263051 | tig0019197:+13340 | None:intergenic |
| CTGATTGGTTTATCGATAAT+AGG | 0.284857 | tig0019197:-10631 | Msa1371300:CDS |
| ATTATAACAGGTTAAAGAAT+TGG | 0.285654 | tig0019197:-10791 | Msa1371300:intron |
| ATGGCAATTGATAGTCTTCC+TGG | 0.286687 | tig0019197:-10553 | Msa1371300:CDS |
| CAAAGAGTTTGGCAGTTCTT+AGG | 0.288036 | tig0019197:-11134 | Msa1371300:CDS |
| GTCTTCCTGGGAATCAGTTC+TGG | 0.288459 | tig0019197:-10540 | Msa1371300:CDS |
| TTTCTTTCAAGAGGCTATAA+AGG | 0.293379 | tig0019197:-12293 | Msa1371300:intron |
| AGCTTGAAGATGATCTTCTT+TGG | 0.301502 | tig0019197:-9492 | Msa1371300:three_prime_UTR |
| TGGTTAGGCTTGAATATCTT+TGG | 0.316056 | tig0019197:+10201 | None:intergenic |
| ATTACTTGTAACGCCGGCTT+GGG | 0.319641 | tig0019197:+10491 | None:intergenic |
| ATTCTTTGCTTCCGCGCTTC+CGG | 0.321126 | tig0019197:-12766 | Msa1371300:CDS |
| TTATTGTATGGAACAAATCT+AGG | 0.322748 | tig0019197:+13391 | None:intergenic |
| AATTCATTTGAACTTTGAAA+TGG | 0.326120 | tig0019197:-9408 | Msa1371300:three_prime_UTR |
| GCGCTTCCGGTCATTGCTTT+CGG | 0.332914 | tig0019197:-12753 | Msa1371300:CDS |
| TTACTATGATGCAGAGATAT+TGG | 0.337001 | tig0019197:-9881 | Msa1371300:CDS |
| CTTTCGGAGAACAACTTAGT+AGG | 0.339784 | tig0019197:-12737 | Msa1371300:CDS |
| GAAAGAGAATAATGGCAAAA+AGG | 0.355095 | tig0019197:-9447 | Msa1371300:three_prime_UTR |
| ATGAATGAAAACGCGTTTGA+TGG | 0.362058 | tig0019197:+13173 | None:intergenic |
| CTTGGCCTTCCTCCTTCAAA+TGG | 0.362198 | tig0019197:-11183 | Msa1371300:CDS |
| TACCAAGCTCTTTCTAGCTT+GGG | 0.365109 | tig0019197:-12544 | Msa1371300:CDS |
| CTGTTGTTCCATGCATTCCT+TGG | 0.365305 | tig0019197:+10979 | None:intergenic |
| AGTGGACAAAACAGCCTTCT+AGG | 0.365772 | tig0019197:+11789 | None:intergenic |
| AGTACCAGCTCTGAATTATA+TGG | 0.368865 | tig0019197:-10956 | Msa1371300:CDS |
| GGAACAAGAAAGGATTCAAT+TGG | 0.383575 | tig0019197:-9471 | Msa1371300:three_prime_UTR |
| ACTAGATTTACAAGAATTGC+AGG | 0.384496 | tig0019197:-12346 | Msa1371300:CDS |
| TCCCATGCATACAAAGAGTT+TGG | 0.386041 | tig0019197:-11145 | Msa1371300:CDS |
| GCAAGCTGTGTTCATTGAAA+TGG | 0.395458 | tig0019197:-10927 | Msa1371300:CDS |
| TGGGTCTGCGCAATCTGTTC+CGG | 0.400996 | tig0019197:-12898 | Msa1371300:CDS |
| ATTCAAGCCTAACCATCTTC+AGG | 0.402816 | tig0019197:-10193 | Msa1371300:CDS |
| GTACCAAGCTCTTTCTAGCT+TGG | 0.404814 | tig0019197:-12545 | Msa1371300:CDS |
| CAATCAGGAGGGACTGCAAT+AGG | 0.410300 | tig0019197:+10647 | None:intergenic |
| TAATAATAATGACAGCATAT+TGG | 0.412439 | tig0019197:-12805 | Msa1371300:intron |
| ATTAAAATATAGGAAATATT+GGG | 0.413687 | tig0019197:+13350 | None:intergenic |
| CTATTGCAGTCCCTCCTGAT+TGG | 0.417106 | tig0019197:-10646 | Msa1371300:CDS |
| TTCCAAGTGGTGTTCCTAGA+AGG | 0.420451 | tig0019197:-11803 | Msa1371300:CDS |
| GATCTTCTTTGGAACAAGAA+AGG | 0.422212 | tig0019197:-9481 | Msa1371300:three_prime_UTR |
| TTAAATGCTATAAACAAGAT+TGG | 0.422231 | tig0019197:-12918 | Msa1371300:CDS |
| ATTCATTTGAACTTTGAAAT+GGG | 0.423981 | tig0019197:-9407 | Msa1371300:three_prime_UTR |
| TGTGTTGCAGGGTTTGTGTT+TGG | 0.424941 | tig0019197:-12420 | Msa1371300:intron |
| TGGGTTTCAAATATATTAGT+AGG | 0.427061 | tig0019197:-9388 | Msa1371300:three_prime_UTR |
| AAAGCAAGATCATGGCGATA+TGG | 0.432577 | tig0019197:-12038 | Msa1371300:CDS |
| GATTGACACTTTAAAACAGT+TGG | 0.433116 | tig0019197:+13243 | None:intergenic |
| GCGCAATCTGTTCCGGCGTT+AGG | 0.439948 | tig0019197:-12891 | Msa1371300:intron |
| TTTGGCAGTTCTTAGGAGGC+AGG | 0.441887 | tig0019197:-11127 | Msa1371300:intron |
| CATTGAAATATTGAGATCAA+TGG | 0.443791 | tig0019197:-9358 | Msa1371300:three_prime_UTR |
| TGTAATGAAATCTGATACCA+AGG | 0.445347 | tig0019197:-10752 | Msa1371300:CDS |
| TGGATGAGATGACAACCAAC+AGG | 0.447214 | tig0019197:-9861 | Msa1371300:CDS |
| ACACCACTTGGAACGTCGTC+AGG | 0.447750 | tig0019197:+11813 | None:intergenic |
| ACTCTGATATGTGGTCTCCT+TGG | 0.450753 | tig0019197:-11201 | Msa1371300:CDS |
| TTGGCATCTACTGCCATTTG+TGG | 0.452678 | tig0019197:-12681 | Msa1371300:CDS |
| GTGTCTCTCTCATCTTTGAC+TGG | 0.455600 | tig0019197:-13425 | Msa1371300:five_prime_UTR |
| TGGTCATTTCCTTCCTAAGT+TGG | 0.457818 | tig0019197:-9338 | Msa1371300:three_prime_UTR |
| CTTTGTTCATTAACTCGGAC+TGG | 0.459027 | tig0019197:+10679 | None:intergenic |
| GTGAACTTCATGGCCAACTT+AGG | 0.459958 | tig0019197:+9325 | None:intergenic |
| GCAAAGAATATGTAGAAAGT+TGG | 0.461025 | tig0019197:+12780 | None:intergenic |
| AATTACTTGTAACGCCGGCT+TGG | 0.462717 | tig0019197:+10490 | None:intergenic |
| TGAGTGAATAATTCCACAAA+TGG | 0.463157 | tig0019197:+12668 | None:intergenic |
| AGATACACATGCCTCATTTG+TGG | 0.466869 | tig0019197:-10373 | Msa1371300:CDS |
| TCTGAGTATGAGGAAATTAT+CGG | 0.467463 | tig0019197:-10159 | Msa1371300:CDS |
| ACTTGATGCTTCTGAGTATG+AGG | 0.470967 | tig0019197:-10169 | Msa1371300:CDS |
| TAAGTATCTATGTATTTCTC+AGG | 0.471983 | tig0019197:+10706 | None:intergenic |
| TGCCAAACTCTTTGTATGCA+TGG | 0.474151 | tig0019197:+11143 | None:intergenic |
| AGAATTATGAGAAGGAAGAA+TGG | 0.475173 | tig0019197:+10240 | None:intergenic |
| ATTCCAGCTTTGATGATAGC+AGG | 0.475557 | tig0019197:-11430 | Msa1371300:CDS |
| AAGCTCTTTCTAGCTTGGGC+TGG | 0.476446 | tig0019197:-12540 | Msa1371300:CDS |
| TCTTTCTAGCTTGGGCTGGT+TGG | 0.476758 | tig0019197:-12536 | Msa1371300:intron |
| ATCCATTGGTATACCGCCAT+TGG | 0.477208 | tig0019197:+12114 | None:intergenic |
| ATGTATTTCTCAGGATCAAA+AGG | 0.479705 | tig0019197:+10715 | None:intergenic |
| TAAATGCTATAAACAAGATT+GGG | 0.483293 | tig0019197:-12917 | Msa1371300:CDS |
| ATAAAGAGATGCAGGTTCCC+AGG | 0.487430 | tig0019197:+11764 | None:intergenic |
| CAGAAAATATGCCAACTGTA+AGG | 0.487488 | tig0019197:+10314 | None:intergenic |
| TCTTGAATGATTCCCTCAAA+TGG | 0.488582 | tig0019197:+12955 | None:intergenic |
| CAAGTAGGAAAACATCATAA+TGG | 0.491729 | tig0019197:+11329 | None:intergenic |
| AATCCAGCTATGGTCTTGAA+TGG | 0.492132 | tig0019197:+10342 | None:intergenic |
| AGGTTTATATTATTAGAGAT+AGG | 0.494556 | tig0019197:+9039 | None:intergenic |
| CTCCTAAAATCAACAAAGGT+TGG | 0.498920 | tig0019197:+12634 | None:intergenic |
| TCTTCCTGGGAATCAGTTCT+GGG | 0.500146 | tig0019197:-10539 | Msa1371300:CDS |
| GGAACAAATCTAGGAAAATG+AGG | 0.503426 | tig0019197:+13400 | None:intergenic |
| TAGGCATCTCCGTTATCAAA+AGG | 0.509147 | tig0019197:-10612 | Msa1371300:CDS |
| GTCCAGTGATAAAGAGATGC+AGG | 0.510174 | tig0019197:+11756 | None:intergenic |
| TAACATGGGAGCACCATTTG+AGG | 0.510206 | tig0019197:-12968 | Msa1371300:exon |
| GTTAGGTTGAGGGGAAAAGA+TGG | 0.511735 | tig0019197:-9292 | Msa1371300:three_prime_UTR |
| AACATGGGAGCACCATTTGA+GGG | 0.512969 | tig0019197:-12967 | Msa1371300:CDS |
| TGTTCTGTTTCGGGGTCACA+TGG | 0.513903 | tig0019197:-10293 | Msa1371300:CDS |
| GATGCAGGTTCCCAGGGAAG+TGG | 0.514690 | tig0019197:+11771 | None:intergenic |
| TCATTCTTTGTTCATTAACT+CGG | 0.516096 | tig0019197:+10674 | None:intergenic |
| GTGTATACAACAAAAGAAAA+CGG | 0.516621 | tig0019197:+13302 | None:intergenic |
| TTTCGGAGAACAACTTAGTA+GGG | 0.520810 | tig0019197:-12736 | Msa1371300:CDS |
| AAGCATCAAGTTCCTGAAGA+TGG | 0.521659 | tig0019197:+10181 | None:intergenic |
| TAATTTCCTCTCACAGCTGA+AGG | 0.523428 | tig0019197:+12989 | None:intergenic |
| CAATTGGTGAAAGAGAATAA+TGG | 0.525184 | tig0019197:-9455 | Msa1371300:three_prime_UTR |
| GTACCATTCAAGACCATAGC+TGG | 0.525744 | tig0019197:-10345 | Msa1371300:CDS |
| CAGTACGTAGTATGTCACTC+AGG | 0.526268 | tig0019197:-10125 | Msa1371300:CDS |
| TCTACAAACTGCAGGATATG+TGG | 0.526801 | tig0019197:-11486 | Msa1371300:intron |
| AACCTGCATCTCTTTATCAC+TGG | 0.527373 | tig0019197:-11758 | Msa1371300:CDS |
| GTCCACAACACTACCATCAC+TGG | 0.527804 | tig0019197:+11855 | None:intergenic |
| AGGTTCCATTGCACAACCCT+TGG | 0.529505 | tig0019197:+10735 | None:intergenic |
| TCAAGTTCCTGAAGATGGTT+AGG | 0.529736 | tig0019197:+10186 | None:intergenic |
| CTATTATCGATAAACCAATC+AGG | 0.530355 | tig0019197:+10632 | None:intergenic |
| TGCCCCAAATATATAAATCA+CGG | 0.532143 | tig0019197:+11456 | None:intergenic |
| GCCAAACTCTTTGTATGCAT+GGG | 0.535179 | tig0019197:+11144 | None:intergenic |
| AAGTTTCAACTCTCCCCTGT+TGG | 0.535774 | tig0019197:+9846 | None:intergenic |
| ATTTGCAGCTGATCCGAAAG+AGG | 0.538031 | tig0019197:-11015 | Msa1371300:intron |
| CTTTCCCAGAACTGATTCCC+AGG | 0.538850 | tig0019197:+10535 | None:intergenic |
| GTACTAGGGCAGATTTGACC+TGG | 0.541341 | tig0019197:-9621 | Msa1371300:intron |
| TGTGGAAGGACTCCATTTGA+AGG | 0.542425 | tig0019197:+11171 | None:intergenic |
| AGCCCAAGCTAGAAAGAGCT+TGG | 0.543809 | tig0019197:+12542 | None:intergenic |
| AATTGTATCATCCTCTGAAG+AGG | 0.544738 | tig0019197:-9546 | Msa1371300:CDS |
| AGACCTGCTATCATCAAAGC+TGG | 0.546409 | tig0019197:+11427 | None:intergenic |
| TTCCAGTGATGGTAGTGTTG+TGG | 0.547605 | tig0019197:-11857 | Msa1371300:CDS |
| TAAGTGTACATTATAACAGT+TGG | 0.548681 | tig0019197:+12603 | None:intergenic |
| TTGCAGGGTTTGTGTTTGGA+CGG | 0.549975 | tig0019197:-12416 | Msa1371300:intron |
| TCCTCTTCGTCACCCCAAGC+CGG | 0.550263 | tig0019197:-10504 | Msa1371300:CDS |
| GCCCCAAATATATAAATCAC+GGG | 0.551841 | tig0019197:+11457 | None:intergenic |
| ACCCGTGATTTATATATTTG+GGG | 0.552067 | tig0019197:-11458 | Msa1371300:CDS |
| TTCCAATGGCGGTATACCAA+TGG | 0.553783 | tig0019197:-12116 | Msa1371300:CDS |
| TCATAGCGTGGCTTCTCAGA+TGG | 0.555026 | tig0019197:-11392 | Msa1371300:CDS |
| TAGGAAAACATCATAATGGT+AGG | 0.556385 | tig0019197:+11333 | None:intergenic |
| AGAGTTTGGCAGTTCTTAGG+AGG | 0.556567 | tig0019197:-11131 | Msa1371300:CDS |
| AGCCTTCTAGGAACACCACT+TGG | 0.556893 | tig0019197:+11801 | None:intergenic |
| TAGGCTTGAATATCTTTGGA+AGG | 0.557117 | tig0019197:+10205 | None:intergenic |
| AAAGCAGAAAAGCAAGATCA+TGG | 0.557963 | tig0019197:-12046 | Msa1371300:CDS |
| GACATACTACGTACTGCAGA+TGG | 0.563507 | tig0019197:+10132 | None:intergenic |
| TGGATTTACAGCCTTACAGT+TGG | 0.564075 | tig0019197:-10325 | Msa1371300:CDS |
| CCACGTGATAGTGATAATGA+TGG | 0.565884 | tig0019197:-9916 | Msa1371300:CDS |
| ATGAGAAGGAAGAATGGTAG+CGG | 0.566015 | tig0019197:+10246 | None:intergenic |
| AATTGCAATTCCTCCGACGA+AGG | 0.567377 | tig0019197:+12137 | None:intergenic |
| CTGGGAATCAGTTCTGGGAA+AGG | 0.571040 | tig0019197:-10534 | Msa1371300:CDS |
| CTTGAGCACTGTAGAAACAT+TGG | 0.571302 | tig0019197:-12700 | Msa1371300:CDS |
| AATGACTGCGAGTAATCCAT+TGG | 0.572971 | tig0019197:+12100 | None:intergenic |
| GAACAAATCTAGGAAAATGA+GGG | 0.575461 | tig0019197:+13401 | None:intergenic |
| TGATACCAAGGGTTGTGCAA+TGG | 0.575807 | tig0019197:-10740 | Msa1371300:CDS |
| TGGTACTGTCTCCACAAATG+AGG | 0.576656 | tig0019197:+10362 | None:intergenic |
| CAGGAGGGACTGCAATAGGT+TGG | 0.576763 | tig0019197:+10651 | None:intergenic |
| CTAATATAGTAACAATGAAG+TGG | 0.577191 | tig0019197:+13109 | None:intergenic |
| TTTCCTCCTTCAGCTGTGAG+AGG | 0.577820 | tig0019197:-12995 | Msa1371300:five_prime_UTR |
| AATATTCAGACAGCACCTCC+AGG | 0.578164 | tig0019197:+9603 | None:intergenic |
| AAAGATGGTACGAGAGTGAA+AGG | 0.579697 | tig0019197:-9277 | Msa1371300:three_prime_UTR |
| GGAATCATTCAAGATGTCAA+AGG | 0.583983 | tig0019197:-12946 | Msa1371300:CDS |
| TATCCCCATAAAACCGAGGT+AGG | 0.584080 | tig0019197:+10586 | None:intergenic |
| AGATTATGGTGTTCCAGTGA+TGG | 0.584710 | tig0019197:-11868 | Msa1371300:CDS |
| CGGAGGAATTGCAATTCCAA+TGG | 0.585619 | tig0019197:-12130 | Msa1371300:CDS |
| ACATCATAATGGTAGGCAGA+TGG | 0.586423 | tig0019197:+11340 | None:intergenic |
| GCCGGCTTGGGGTGACGAAG+AGG | 0.586471 | tig0019197:+10503 | None:intergenic |
| GGACTCCATTTGAAGGAGGA+AGG | 0.587102 | tig0019197:+11178 | None:intergenic |
| ATGTAATAATGTGTAAAGAG+AGG | 0.587989 | tig0019197:+13084 | None:intergenic |
| CTAGATTTACAAGAATTGCA+GGG | 0.588173 | tig0019197:-12345 | Msa1371300:CDS |
| AGTCTTTAGACTCTGATATG+TGG | 0.592532 | tig0019197:-11210 | Msa1371300:intron |
| ACTTCATGGCCAACTTAGGA+AGG | 0.593342 | tig0019197:+9329 | None:intergenic |
| TGGCAATTGATAGTCTTCCT+GGG | 0.593727 | tig0019197:-10552 | Msa1371300:CDS |
| GAAAAGCGCCAAGGAATGCA+TGG | 0.594390 | tig0019197:-10987 | Msa1371300:CDS |
| TTTGCAGCTGATCCGAAAGA+GGG | 0.595342 | tig0019197:-11014 | Msa1371300:intron |
| TAAGGCTGTAAATCCAGCTA+TGG | 0.595564 | tig0019197:+10332 | None:intergenic |
| TAGTGATAATGATGGAAGCT+CGG | 0.596596 | tig0019197:-9908 | Msa1371300:CDS |
| TGTTCTCCGAAAGCAATGAC+CGG | 0.597888 | tig0019197:+12747 | None:intergenic |
| TACTCAATTACTTGTAACGC+CGG | 0.600590 | tig0019197:+10485 | None:intergenic |
| TTTCCTCTCACAGCTGAAGG+AGG | 0.600917 | tig0019197:+12992 | None:intergenic |
| GCTTGAATATCTTTGGAAGG+AGG | 0.601711 | tig0019197:+10208 | None:intergenic |
| AAGAGCTTGGTACCCAGTTG+AGG | 0.604187 | tig0019197:+12555 | None:intergenic |
| AGGCGAGTTCAGCACTCCCA+AGG | 0.604329 | tig0019197:-12168 | Msa1371300:CDS |
| TTTGAACCACAGGGACTGGT+AGG | 0.604416 | tig0019197:-12188 | Msa1371300:intron |
| GGAAACAATATTCCACCTAT+CGG | 0.607030 | tig0019197:+10267 | None:intergenic |
| ATTATTCACTCAATTATAGG+TGG | 0.609337 | tig0019197:-12657 | Msa1371300:CDS |
| CAAGGTTGAAAATCCTTCGT+CGG | 0.611167 | tig0019197:-12150 | Msa1371300:CDS |
| TGAATTAAATTACCTAACGC+CGG | 0.611783 | tig0019197:+12879 | None:intergenic |
| GGATGAGATGACAACCAACA+GGG | 0.624263 | tig0019197:-9860 | Msa1371300:CDS |
| TAAAGAGATGCAGGTTCCCA+GGG | 0.625123 | tig0019197:+11765 | None:intergenic |
| GTTCTCTGAGAATTATGAGA+AGG | 0.627074 | tig0019197:+10232 | None:intergenic |
| TTATCACTGGACAGTAGTGA+AGG | 0.627297 | tig0019197:-11745 | Msa1371300:intron |
| GCTGTGAGAGGAAATTAACA+TGG | 0.632114 | tig0019197:-12983 | Msa1371300:exon |
| CAACTTAGTAGGGATACAGA+TGG | 0.633505 | tig0019197:-12726 | Msa1371300:CDS |
| TAGATTTACAAGAATTGCAG+GGG | 0.635506 | tig0019197:-12344 | Msa1371300:CDS |
| GTGAGAGCAGTCCTCTTCAG+AGG | 0.639145 | tig0019197:+9535 | None:intergenic |
| GGTTGAAAATCCTTCGTCGG+AGG | 0.639194 | tig0019197:-12147 | Msa1371300:CDS |
| GGGGTCACATGGATACCGAT+AGG | 0.640094 | tig0019197:-10282 | Msa1371300:CDS |
| TTTGTATGCATGGGAGACTG+TGG | 0.640494 | tig0019197:+11153 | None:intergenic |
| TTCAATTCAGGGAGGCTACG+AGG | 0.640834 | tig0019197:-11900 | Msa1371300:intron |
| TATCAAAAGGATACCTACCT+CGG | 0.648218 | tig0019197:-10599 | Msa1371300:CDS |
| TTATCGATAAACCAATCAGG+AGG | 0.649930 | tig0019197:+10635 | None:intergenic |
| TTACTTGTAACGCCGGCTTG+GGG | 0.651277 | tig0019197:+10492 | None:intergenic |
| CAAACTGCAGGATATGTGGA+AGG | 0.653071 | tig0019197:-11482 | Msa1371300:intron |
| GCAACTCCTAAAATCAACAA+AGG | 0.653603 | tig0019197:+12630 | None:intergenic |
| GAAAGCAATGACCGGAAGCG+CGG | 0.656263 | tig0019197:+12755 | None:intergenic |
| CATTTGAAGGAGGAAGGCCA+AGG | 0.657670 | tig0019197:+11184 | None:intergenic |
| GTCACATGGATACCGATAGG+TGG | 0.659868 | tig0019197:-10279 | Msa1371300:CDS |
| AACAGACCATTATTCCAAGT+AGG | 0.662683 | tig0019197:+11314 | None:intergenic |
| TATCGATAAACCAATCAGGA+GGG | 0.666981 | tig0019197:+10636 | None:intergenic |
| ATGCCTGACGACGTTCCAAG+TGG | 0.671559 | tig0019197:-11816 | Msa1371300:CDS |
| AGGAATTGCAATTCCAATGG+CGG | 0.673504 | tig0019197:-12127 | Msa1371300:CDS |
| AGTACGTAGTATGTCACTCA+GGG | 0.676575 | tig0019197:-10124 | Msa1371300:intron |
| GGAAGGACTCCATTTGAAGG+AGG | 0.676893 | tig0019197:+11174 | None:intergenic |
| TATGCATGGGAGACTGTGGA+AGG | 0.677272 | tig0019197:+11157 | None:intergenic |
| GTAATGAAATCTGATACCAA+GGG | 0.682765 | tig0019197:-10751 | Msa1371300:CDS |
| CTGTGAGAGGAAATTAACAT+GGG | 0.686817 | tig0019197:-12982 | Msa1371300:exon |
| CTAGGGCAGATTTGACCTGG+AGG | 0.687491 | tig0019197:-9618 | Msa1371300:intron |
| AAAATATCCCCATAAAACCG+AGG | 0.688473 | tig0019197:+10582 | None:intergenic |
| GAGGGTTGTGAAAAGCGCCA+AGG | 0.688617 | tig0019197:-10996 | Msa1371300:CDS |
| CCTAACAATACATACAGTAG+GGG | 0.689459 | tig0019197:+10898 | None:intergenic |
| GGTACGAGAGTGAAAGGACA+AGG | 0.690185 | tig0019197:-9271 | Msa1371300:three_prime_UTR |
| CCATCATTATCACTATCACG+TGG | 0.692316 | tig0019197:+9916 | None:intergenic |
| AGTGACGTTTGTGAATACTC+AGG | 0.702970 | tig0019197:+9083 | None:intergenic |
| CGTTTGTGAATACTCAGGTG+TGG | 0.711020 | tig0019197:+9088 | None:intergenic |
| GATGAGATGACAACCAACAG+GGG | 0.715278 | tig0019197:-9859 | Msa1371300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTAAAATTAAAATAT+AGG | + | tig0019197:9157-9176 | None:intergenic | 0.0% |
| !! | ATTAAAATATAGGAAATATT+GGG | + | tig0019197:9147-9166 | None:intergenic | 10.0% |
| !! | AATTAAAATATAGGAAATAT+TGG | + | tig0019197:9148-9167 | None:intergenic | 10.0% |
| !!! | TAAATGCTTAAATATATTTT+TGG | + | tig0019197:12483-12502 | None:intergenic | 10.0% |
| !!! | AATAATTGTGTTTTATTGTA+TGG | + | tig0019197:9118-9137 | None:intergenic | 15.0% |
| !! | ATTCTTTAAATTTCTGTTTA+AGG | - | tig0019197:10000-10019 | Msa1371300:intron | 15.0% |
| !! | TTCTTTAAATTTCTGTTTAA+GGG | - | tig0019197:10001-10020 | Msa1371300:intron | 15.0% |
| !! | AAATACATTGTGTATTTAAT+TGG | - | tig0019197:10262-10281 | Msa1371300:CDS | 15.0% |
| !!! | TCTGAATATTACAATTTTTT+AGG | - | tig0019197:12904-12923 | Msa1371300:CDS | 15.0% |
| !! | AAAAAACTTTATTGGTATTA+TGG | + | tig0019197:13346-13365 | None:intergenic | 15.0% |
| !! | TTAAATGCTATAAACAAGAT+TGG | - | tig0019197:9576-9595 | Msa1371300:CDS | 20.0% |
| !! | TAAATGCTATAAACAAGATT+GGG | - | tig0019197:9577-9596 | Msa1371300:CDS | 20.0% |
| !! | TAATAATAATGACAGCATAT+TGG | - | tig0019197:9689-9708 | Msa1371300:intron | 20.0% |
| !!! | TTCTTATTTTTGTTAGAAAG+AGG | + | tig0019197:10243-10262 | None:intergenic | 20.0% |
| !! | CCAAAAAAAAAAATTGCTTA+AGG | + | tig0019197:10521-10540 | None:intergenic | 20.0% |
| !!! | CCTTAAGCAATTTTTTTTTT+TGG | - | tig0019197:10518-10537 | Msa1371300:CDS | 20.0% |
| !!! | TGTATAAAAAGAAAGCATTT+TGG | + | tig0019197:10812-10831 | None:intergenic | 20.0% |
| !! | ATAACATAAATCCAAATTCT+AGG | + | tig0019197:11219-11238 | None:intergenic | 20.0% |
| !!! | GTTGGTTTTTAAATTATAAC+AGG | - | tig0019197:11691-11710 | Msa1371300:intron | 20.0% |
| !! | ATTATAACAGGTTAAAGAAT+TGG | - | tig0019197:11703-11722 | Msa1371300:intron | 20.0% |
| !! | CTACATTGAAAAAAAAGTTT+AGG | + | tig0019197:12043-12062 | None:intergenic | 20.0% |
| !! | ATGAATCTTAAAACTTAAGA+GGG | + | tig0019197:12809-12828 | None:intergenic | 20.0% |
| !! | AATGAATCTTAAAACTTAAG+AGG | + | tig0019197:12810-12829 | None:intergenic | 20.0% |
| !!! | AATTCATTTGAACTTTGAAA+TGG | - | tig0019197:13086-13105 | Msa1371300:five_prime_UTR | 20.0% |
| !!! | ATTCATTTGAACTTTGAAAT+GGG | - | tig0019197:13087-13106 | Msa1371300:five_prime_UTR | 20.0% |
| !!! | GTTAAGAATTTTTTTTCTGT+TGG | - | tig0019197:13313-13332 | Msa1371300:five_prime_UTR | 20.0% |
| ! | TTATTGTATGGAACAAATCT+AGG | + | tig0019197:9106-9125 | None:intergenic | 25.0% |
| ! | GTGTATACAACAAAAGAAAA+CGG | + | tig0019197:9195-9214 | None:intergenic | 25.0% |
| ! | CTAATATAGTAACAATGAAG+TGG | + | tig0019197:9388-9407 | None:intergenic | 25.0% |
| ! | ATGTAATAATGTGTAAAGAG+AGG | + | tig0019197:9413-9432 | None:intergenic | 25.0% |
| ! | GGAATTATTCACTCAATTAT+AGG | - | tig0019197:9834-9853 | Msa1371300:intron | 25.0% |
| ! | ATTATTCACTCAATTATAGG+TGG | - | tig0019197:9837-9856 | Msa1371300:intron | 25.0% |
| ! | TAAGTGTACATTATAACAGT+TGG | + | tig0019197:9894-9913 | None:intergenic | 25.0% |
| ! | AATGCAAGAATAAAGATCAT+TGG | + | tig0019197:10575-10594 | None:intergenic | 25.0% |
| ! | TTATTCTTGCATTTCAATTC+AGG | - | tig0019197:10582-10601 | Msa1371300:CDS | 25.0% |
| ! | TATTCTTGCATTTCAATTCA+GGG | - | tig0019197:10583-10602 | Msa1371300:CDS | 25.0% |
| ! | ACACCTTGAATATTAAGTAT+TGG | + | tig0019197:10889-10908 | None:intergenic | 25.0% |
| !!! | AGTCGTGATCATTTTAATTT+AGG | - | tig0019197:10953-10972 | Msa1371300:CDS | 25.0% |
| ! | GTTAGACTTATATGGATATT+AGG | + | tig0019197:10984-11003 | None:intergenic | 25.0% |
| ! | TACCCGTGATTTATATATTT+GGG | - | tig0019197:11035-11054 | Msa1371300:intron | 25.0% |
| !!! | TTTGTTTTCTTCCTAGAATT+TGG | - | tig0019197:11205-11224 | Msa1371300:intron | 25.0% |
| ! | GATTGACATAATTATCTCTA+TGG | - | tig0019197:11259-11278 | Msa1371300:intron | 25.0% |
| ! | TAAGTATCTATGTATTTCTC+AGG | + | tig0019197:11791-11810 | None:intergenic | 25.0% |
| ! | TCATTCTTTGTTCATTAACT+CGG | + | tig0019197:11823-11842 | None:intergenic | 25.0% |
| !!! | AATTTTTTAGGATGCAGAAA+AGG | - | tig0019197:12916-12935 | Msa1371300:CDS | 25.0% |
| ! | TGGGTTTCAAATATATTAGT+AGG | - | tig0019197:13106-13125 | Msa1371300:five_prime_UTR | 25.0% |
| ! | CATTGAAATATTGAGATCAA+TGG | - | tig0019197:13136-13155 | Msa1371300:five_prime_UTR | 25.0% |
| !!! | TACCAATAAAGTTTTTTGAG+AGG | - | tig0019197:13349-13368 | Msa1371300:five_prime_UTR | 25.0% |
| ! | ATCCTCTCAAAAAACTTTAT+TGG | + | tig0019197:13354-13373 | None:intergenic | 25.0% |
| GAACAAATCTAGGAAAATGA+GGG | + | tig0019197:9096-9115 | None:intergenic | 30.0% | |
| !! | GATTGACACTTTAAAACAGT+TGG | + | tig0019197:9254-9273 | None:intergenic | 30.0% |
| ATGGAGAATTGACAGAAAAA+AGG | + | tig0019197:9305-9324 | None:intergenic | 30.0% | |
| TGAATTAAATTACCTAACGC+CGG | + | tig0019197:9618-9637 | None:intergenic | 30.0% | |
| GCAAAGAATATGTAGAAAGT+TGG | + | tig0019197:9717-9736 | None:intergenic | 30.0% | |
| TGAGTGAATAATTCCACAAA+TGG | + | tig0019197:9829-9848 | None:intergenic | 30.0% | |
| ! | ACGAACATTTTAGATCGATA+CGG | + | tig0019197:10051-10070 | None:intergenic | 30.0% |
| ACTAGATTTACAAGAATTGC+AGG | - | tig0019197:10148-10167 | Msa1371300:CDS | 30.0% | |
| CTAGATTTACAAGAATTGCA+GGG | - | tig0019197:10149-10168 | Msa1371300:CDS | 30.0% | |
| TAGATTTACAAGAATTGCAG+GGG | - | tig0019197:10150-10169 | Msa1371300:CDS | 30.0% | |
| TTTCTTTCAAGAGGCTATAA+AGG | - | tig0019197:10201-10220 | Msa1371300:CDS | 30.0% | |
| ACAAAAATTGTTTGAACCAC+AGG | - | tig0019197:10296-10315 | Msa1371300:CDS | 30.0% | |
| CAAAAATTGTTTGAACCACA+GGG | - | tig0019197:10297-10316 | Msa1371300:CDS | 30.0% | |
| !! | CTAATGTGGTATTGGATTTT+TGG | + | tig0019197:10497-10516 | None:intergenic | 30.0% |
| AAATTGCTTAAGGTCTAATG+TGG | + | tig0019197:10511-10530 | None:intergenic | 30.0% | |
| TAAAGATCATTGGAGTGATA+AGG | + | tig0019197:10565-10584 | None:intergenic | 30.0% | |
| GCACCAATACTTAATATTCA+AGG | - | tig0019197:10883-10902 | Msa1371300:intron | 30.0% | |
| TAGAAGCTGTTAGACTTATA+TGG | + | tig0019197:10992-11011 | None:intergenic | 30.0% | |
| GTACCCGTGATTTATATATT+TGG | - | tig0019197:11034-11053 | Msa1371300:intron | 30.0% | |
| ACCCGTGATTTATATATTTG+GGG | - | tig0019197:11036-11055 | Msa1371300:intron | 30.0% | |
| TGCCCCAAATATATAAATCA+CGG | + | tig0019197:11041-11060 | None:intergenic | 30.0% | |
| TAGGAAAACATCATAATGGT+AGG | + | tig0019197:11164-11183 | None:intergenic | 30.0% | |
| CAAGTAGGAAAACATCATAA+TGG | + | tig0019197:11168-11187 | None:intergenic | 30.0% | |
| ! | CATTATGATGTTTTCCTACT+TGG | - | tig0019197:11166-11185 | Msa1371300:CDS | 30.0% |
| ! | TGTTTTCCTACTTGGAATAA+TGG | - | tig0019197:11174-11193 | Msa1371300:CDS | 30.0% |
| ! | CATCGATATATTTTGCATCA+AGG | - | tig0019197:11394-11413 | Msa1371300:CDS | 30.0% |
| TTGAGAAGAAATTAAGAACC+AGG | + | tig0019197:11422-11441 | None:intergenic | 30.0% | |
| ! | TTTTCCATATAATTCAGAGC+TGG | + | tig0019197:11545-11564 | None:intergenic | 30.0% |
| ACCTAACAATACATACAGTA+GGG | + | tig0019197:11600-11619 | None:intergenic | 30.0% | |
| AACCTAACAATACATACAGT+AGG | + | tig0019197:11601-11620 | None:intergenic | 30.0% | |
| GATACTAATACACATAGTGT+TGG | - | tig0019197:11673-11692 | Msa1371300:intron | 30.0% | |
| TGTAATGAAATCTGATACCA+AGG | - | tig0019197:11742-11761 | Msa1371300:intron | 30.0% | |
| GTAATGAAATCTGATACCAA+GGG | - | tig0019197:11743-11762 | Msa1371300:intron | 30.0% | |
| ATGTATTTCTCAGGATCAAA+AGG | + | tig0019197:11782-11801 | None:intergenic | 30.0% | |
| CTATTATCGATAAACCAATC+AGG | + | tig0019197:11865-11884 | None:intergenic | 30.0% | |
| !! | CTGATTGGTTTATCGATAAT+AGG | - | tig0019197:11863-11882 | Msa1371300:CDS | 30.0% |
| GAAAAAAAAGTTTAGGCACA+AGG | + | tig0019197:12036-12055 | None:intergenic | 30.0% | |
| ! | TGTCATTGTCTTGTATGTTT+TGG | - | tig0019197:12085-12104 | Msa1371300:CDS | 30.0% |
| ! | GTCATTGTCTTGTATGTTTT+GGG | - | tig0019197:12086-12105 | Msa1371300:CDS | 30.0% |
| ! | GCATATTTTCTGTTCTGTTT+CGG | - | tig0019197:12191-12210 | Msa1371300:intron | 30.0% |
| ! | CATATTTTCTGTTCTGTTTC+GGG | - | tig0019197:12192-12211 | Msa1371300:intron | 30.0% |
| ! | ATATTTTCTGTTCTGTTTCG+GGG | - | tig0019197:12193-12212 | Msa1371300:intron | 30.0% |
| AGAATTATGAGAAGGAAGAA+TGG | + | tig0019197:12257-12276 | None:intergenic | 30.0% | |
| TCTGAGTATGAGGAAATTAT+CGG | - | tig0019197:12335-12354 | Msa1371300:CDS | 30.0% | |
| TCCAACTTAGGATTTGAATT+TGG | - | tig0019197:12538-12557 | Msa1371300:CDS | 30.0% | |
| ACCAAATTCAAATCCTAAGT+TGG | + | tig0019197:12542-12561 | None:intergenic | 30.0% | |
| TTACTATGATGCAGAGATAT+TGG | - | tig0019197:12613-12632 | Msa1371300:CDS | 30.0% | |
| ! | TTATGCTTGTGTTTTGTACT+AGG | - | tig0019197:12858-12877 | Msa1371300:intron | 30.0% |
| ! | TATGCTTGTGTTTTGTACTA+GGG | - | tig0019197:12859-12878 | Msa1371300:intron | 30.0% |
| CAATTGGTGAAAGAGAATAA+TGG | - | tig0019197:13039-13058 | Msa1371300:five_prime_UTR | 30.0% | |
| GAAAGAGAATAATGGCAAAA+AGG | - | tig0019197:13047-13066 | Msa1371300:five_prime_UTR | 30.0% | |
| !!! | TCCTTTTTTTGTGAACTTCA+TGG | + | tig0019197:13182-13201 | None:intergenic | 30.0% |
| AGTTCACAAAAAAAGGAGTT+AGG | - | tig0019197:13185-13204 | Msa1371300:five_prime_UTR | 30.0% | |
| !! | AAAAAAAGGAGTTAGGTTGA+GGG | - | tig0019197:13192-13211 | Msa1371300:five_prime_UTR | 30.0% |
| GGACAAGGAAAAAAAAAAGA+CGG | - | tig0019197:13238-13257 | Msa1371300:five_prime_UTR | 30.0% | |
| GACAAGGAAAAAAAAAAGAC+GGG | - | tig0019197:13239-13258 | Msa1371300:five_prime_UTR | 30.0% | |
| ACAAGGAAAAAAAAAAGACG+GGG | - | tig0019197:13240-13259 | Msa1371300:five_prime_UTR | 30.0% | |
| GGAACAAATCTAGGAAAATG+AGG | + | tig0019197:9097-9116 | None:intergenic | 35.0% | |
| ATGAATGAAAACGCGTTTGA+TGG | + | tig0019197:9324-9343 | None:intergenic | 35.0% | |
| CTGTGAGAGGAAATTAACAT+GGG | - | tig0019197:9512-9531 | Msa1371300:exon | 35.0% | |
| TCTTGAATGATTCCCTCAAA+TGG | + | tig0019197:9542-9561 | None:intergenic | 35.0% | |
| GGAATCATTCAAGATGTCAA+AGG | - | tig0019197:9548-9567 | Msa1371300:CDS | 35.0% | |
| TTTCGGAGAACAACTTAGTA+GGG | - | tig0019197:9758-9777 | Msa1371300:intron | 35.0% | |
| CTCCTAAAATCAACAAAGGT+TGG | + | tig0019197:9863-9882 | None:intergenic | 35.0% | |
| GCAACTCCTAAAATCAACAA+AGG | + | tig0019197:9867-9886 | None:intergenic | 35.0% | |
| TGCAAAAATACACCTCAACT+GGG | - | tig0019197:9927-9946 | Msa1371300:CDS | 35.0% | |
| AATGTTCGTATTTGTGTTGC+AGG | - | tig0019197:10062-10081 | Msa1371300:intron | 35.0% | |
| ATGTTCGTATTTGTGTTGCA+GGG | - | tig0019197:10063-10082 | Msa1371300:intron | 35.0% | |
| ! | CACTGTTCTTTTCTTTCAAG+AGG | - | tig0019197:10192-10211 | Msa1371300:CDS | 35.0% |
| !! | TCGCAGTCATTTTCTCTTTT+GGG | - | tig0019197:10406-10425 | Msa1371300:intron | 35.0% |
| AAAGCAGAAAAGCAAGATCA+TGG | - | tig0019197:10448-10467 | Msa1371300:intron | 35.0% | |
| CTTAAGGTCTAATGTGGTAT+TGG | + | tig0019197:10505-10524 | None:intergenic | 35.0% | |
| CTCTACAGACATACATTACA+TGG | + | tig0019197:10864-10883 | None:intergenic | 35.0% | |
| GCCCCAAATATATAAATCAC+GGG | + | tig0019197:11040-11059 | None:intergenic | 35.0% | |
| !!! | ATACTTTTTCGATCATAGCG+TGG | - | tig0019197:11090-11109 | Msa1371300:intron | 35.0% |
| AACAGACCATTATTCCAAGT+AGG | + | tig0019197:11183-11202 | None:intergenic | 35.0% | |
| AGTCTTTAGACTCTGATATG+TGG | - | tig0019197:11284-11303 | Msa1371300:intron | 35.0% | |
| !! | AGTACCAGCTCTGAATTATA+TGG | - | tig0019197:11538-11557 | Msa1371300:intron | 35.0% |
| CCTAACAATACATACAGTAG+GGG | + | tig0019197:11599-11618 | None:intergenic | 35.0% | |
| TATCGATAAACCAATCAGGA+GGG | + | tig0019197:11861-11880 | None:intergenic | 35.0% | |
| TTATCGATAAACCAATCAGG+AGG | + | tig0019197:11862-11881 | None:intergenic | 35.0% | |
| ! | GGTAGGTATCCTTTTGATAA+CGG | + | tig0019197:11894-11913 | None:intergenic | 35.0% |
| TATCAAAAGGATACCTACCT+CGG | - | tig0019197:11895-11914 | Msa1371300:intron | 35.0% | |
| AAAATATCCCCATAAAACCG+AGG | + | tig0019197:11915-11934 | None:intergenic | 35.0% | |
| ! | ATGGGGATATTTTGCTTACA+TGG | - | tig0019197:11922-11941 | Msa1371300:intron | 35.0% |
| TACTCAATTACTTGTAACGC+CGG | + | tig0019197:12012-12031 | None:intergenic | 35.0% | |
| CAGAAAATATGCCAACTGTA+AGG | + | tig0019197:12183-12202 | None:intergenic | 35.0% | |
| GGAAACAATATTCCACCTAT+CGG | + | tig0019197:12230-12249 | None:intergenic | 35.0% | |
| ! | GTTCTCTGAGAATTATGAGA+AGG | + | tig0019197:12265-12284 | None:intergenic | 35.0% |
| TAGGCTTGAATATCTTTGGA+AGG | + | tig0019197:12292-12311 | None:intergenic | 35.0% | |
| TGGTTAGGCTTGAATATCTT+TGG | + | tig0019197:12296-12315 | None:intergenic | 35.0% | |
| ! | AAATCCTAAGTTGGAAAGCT+TGG | + | tig0019197:12533-12552 | None:intergenic | 35.0% |
| GGATTTGAATTTGGTTGATC+AGG | - | tig0019197:12547-12566 | Msa1371300:CDS | 35.0% | |
| TGAATTTGGTTGATCAGGAT+AGG | - | tig0019197:12552-12571 | Msa1371300:CDS | 35.0% | |
| GAATTTGGTTGATCAGGATA+GGG | - | tig0019197:12553-12572 | Msa1371300:CDS | 35.0% | |
| ! | TAGTGATAATGATGGAAGCT+CGG | - | tig0019197:12586-12605 | Msa1371300:CDS | 35.0% |
| ! | AATTGTATCATCCTCTGAAG+AGG | - | tig0019197:12948-12967 | Msa1371300:CDS | 35.0% |
| AGCTTGAAGATGATCTTCTT+TGG | - | tig0019197:13002-13021 | Msa1371300:five_prime_UTR | 35.0% | |
| !! | GATCTTCTTTGGAACAAGAA+AGG | - | tig0019197:13013-13032 | Msa1371300:five_prime_UTR | 35.0% |
| GGAACAAGAAAGGATTCAAT+TGG | - | tig0019197:13023-13042 | Msa1371300:five_prime_UTR | 35.0% | |
| GGCAAAAAGGAACAAAGATA+TGG | - | tig0019197:13060-13079 | Msa1371300:five_prime_UTR | 35.0% | |
| GCCATGAAGTTCACAAAAAA+AGG | - | tig0019197:13178-13197 | Msa1371300:five_prime_UTR | 35.0% | |
| ! | CAAAAAAAGGAGTTAGGTTG+AGG | - | tig0019197:13191-13210 | Msa1371300:five_prime_UTR | 35.0% |
| !! | AAAAAAGGAGTTAGGTTGAG+GGG | - | tig0019197:13193-13212 | Msa1371300:five_prime_UTR | 35.0% |
| CAAGGAAAAAAAAAAGACGG+GGG | - | tig0019197:13241-13260 | Msa1371300:five_prime_UTR | 35.0% | |
| TAATTTCCTCTCACAGCTGA+AGG | + | tig0019197:9508-9527 | None:intergenic | 40.0% | |
| GCTGTGAGAGGAAATTAACA+TGG | - | tig0019197:9511-9530 | Msa1371300:exon | 40.0% | |
| CTTTCGGAGAACAACTTAGT+AGG | - | tig0019197:9757-9776 | Msa1371300:intron | 40.0% | |
| CAACTTAGTAGGGATACAGA+TGG | - | tig0019197:9768-9787 | Msa1371300:intron | 40.0% | |
| ! | CTTGAGCACTGTAGAAACAT+TGG | - | tig0019197:9794-9813 | Msa1371300:intron | 40.0% |
| !!! | GGCCAACCTTTGTTGATTTT+AGG | - | tig0019197:9858-9877 | Msa1371300:CDS | 40.0% |
| CTGCAAAAATACACCTCAAC+TGG | - | tig0019197:9926-9945 | Msa1371300:CDS | 40.0% | |
| !! | TACCAAGCTCTTTCTAGCTT+GGG | - | tig0019197:9950-9969 | Msa1371300:intron | 40.0% |
| AGAATTGCAGGGGAGTTATT+TGG | - | tig0019197:10160-10179 | Msa1371300:CDS | 40.0% | |
| ! | GACGAAGGATTTTCAACCTT+GGG | + | tig0019197:10345-10364 | None:intergenic | 40.0% |
| CAAGGTTGAAAATCCTTCGT+CGG | - | tig0019197:10344-10363 | Msa1371300:CDS | 40.0% | |
| AGGAATTGCAATTCCAATGG+CGG | - | tig0019197:10367-10386 | Msa1371300:CDS | 40.0% | |
| AATGACTGCGAGTAATCCAT+TGG | + | tig0019197:10397-10416 | None:intergenic | 40.0% | |
| !! | CTCGCAGTCATTTTCTCTTT+TGG | - | tig0019197:10405-10424 | Msa1371300:intron | 40.0% |
| AAAGCAAGATCATGGCGATA+TGG | - | tig0019197:10456-10475 | Msa1371300:intron | 40.0% | |
| TCTTGCATTTCAATTCAGGG+AGG | - | tig0019197:10586-10605 | Msa1371300:CDS | 40.0% | |
| !! | CGAGGCTTTATTGCAGATTA+TGG | - | tig0019197:10612-10631 | Msa1371300:CDS | 40.0% |
| AGATTATGGTGTTCCAGTGA+TGG | - | tig0019197:10626-10645 | Msa1371300:CDS | 40.0% | |
| AACCTGCATCTCTTTATCAC+TGG | - | tig0019197:10736-10755 | Msa1371300:CDS | 40.0% | |
| TTATCACTGGACAGTAGTGA+AGG | - | tig0019197:10749-10768 | Msa1371300:CDS | 40.0% | |
| CACTAACACGTGTCATACAT+CGG | + | tig0019197:10914-10933 | None:intergenic | 40.0% | |
| TAACAGCTTCTACAAACTGC+AGG | - | tig0019197:11000-11019 | Msa1371300:CDS | 40.0% | |
| TCTACAAACTGCAGGATATG+TGG | - | tig0019197:11008-11027 | Msa1371300:CDS | 40.0% | |
| ! | ATTCCAGCTTTGATGATAGC+AGG | - | tig0019197:11064-11083 | Msa1371300:intron | 40.0% |
| ACATCATAATGGTAGGCAGA+TGG | + | tig0019197:11157-11176 | None:intergenic | 40.0% | |
| TCCCATGCATACAAAGAGTT+TGG | - | tig0019197:11349-11368 | Msa1371300:CDS | 40.0% | |
| GCCAAACTCTTTGTATGCAT+GGG | + | tig0019197:11353-11372 | None:intergenic | 40.0% | |
| TGCCAAACTCTTTGTATGCA+TGG | + | tig0019197:11354-11373 | None:intergenic | 40.0% | |
| CAAAGAGTTTGGCAGTTCTT+AGG | - | tig0019197:11360-11379 | Msa1371300:CDS | 40.0% | |
| ! | ATATTTTGCATCAAGGCTCC+TGG | - | tig0019197:11401-11420 | Msa1371300:CDS | 40.0% |
| CAAATCAATGGTGCAACACA+AGG | + | tig0019197:11464-11483 | None:intergenic | 40.0% | |
| GCAAGCTGTGTTCATTGAAA+TGG | - | tig0019197:11567-11586 | Msa1371300:intron | 40.0% | |
| CCCCTACTGTATGTATTGTT+AGG | - | tig0019197:11596-11615 | Msa1371300:intron | 40.0% | |
| CTTTGTTCATTAACTCGGAC+TGG | + | tig0019197:11818-11837 | None:intergenic | 40.0% | |
| TAGGCATCTCCGTTATCAAA+AGG | - | tig0019197:11882-11901 | Msa1371300:CDS | 40.0% | |
| !! | GATACCTACCTCGGTTTTAT+GGG | - | tig0019197:11904-11923 | Msa1371300:intron | 40.0% |
| !! | ATACCTACCTCGGTTTTATG+GGG | - | tig0019197:11905-11924 | Msa1371300:intron | 40.0% |
| ! | ATGGCAATTGATAGTCTTCC+TGG | - | tig0019197:11941-11960 | Msa1371300:intron | 40.0% |
| ! | TGGCAATTGATAGTCTTCCT+GGG | - | tig0019197:11942-11961 | Msa1371300:intron | 40.0% |
| AGATACACATGCCTCATTTG+TGG | - | tig0019197:12121-12140 | Msa1371300:CDS | 40.0% | |
| ! | AATCCAGCTATGGTCTTGAA+TGG | + | tig0019197:12155-12174 | None:intergenic | 40.0% |
| TAAGGCTGTAAATCCAGCTA+TGG | + | tig0019197:12165-12184 | None:intergenic | 40.0% | |
| TGGATTTACAGCCTTACAGT+TGG | - | tig0019197:12169-12188 | Msa1371300:CDS | 40.0% | |
| ATGAGAAGGAAGAATGGTAG+CGG | + | tig0019197:12251-12270 | None:intergenic | 40.0% | |
| ! | GCTTGAATATCTTTGGAAGG+AGG | + | tig0019197:12289-12308 | None:intergenic | 40.0% |
| ATTCAAGCCTAACCATCTTC+AGG | - | tig0019197:12301-12320 | Msa1371300:CDS | 40.0% | |
| TCAAGTTCCTGAAGATGGTT+AGG | + | tig0019197:12311-12330 | None:intergenic | 40.0% | |
| AAGCATCAAGTTCCTGAAGA+TGG | + | tig0019197:12316-12335 | None:intergenic | 40.0% | |
| ACTTGATGCTTCTGAGTATG+AGG | - | tig0019197:12325-12344 | Msa1371300:CDS | 40.0% | |
| AGTACGTAGTATGTCACTCA+GGG | - | tig0019197:12370-12389 | Msa1371300:CDS | 40.0% | |
| TACTCCAAGCTTTCCAACTT+AGG | - | tig0019197:12526-12545 | Msa1371300:intron | 40.0% | |
| CCATCATTATCACTATCACG+TGG | + | tig0019197:12581-12600 | None:intergenic | 40.0% | |
| ! | CCACGTGATAGTGATAATGA+TGG | - | tig0019197:12578-12597 | Msa1371300:CDS | 40.0% |
| GATCATTGAAGCTGTTACTG+CGG | + | tig0019197:12700-12719 | None:intergenic | 40.0% | |
| GATCATTGAAGCTGTTACTG+TGG | + | tig0019197:12700-12719 | None:intergenic | 40.0% | |
| CTTCATTGAAGCTGTTACTG+TGG | + | tig0019197:12754-12773 | None:intergenic | 40.0% | |
| TGGTCATTTCCTTCCTAAGT+TGG | - | tig0019197:13156-13175 | Msa1371300:five_prime_UTR | 40.0% | |
| AAAGATGGTACGAGAGTGAA+AGG | - | tig0019197:13217-13236 | Msa1371300:five_prime_UTR | 40.0% | |
| AGTGACGTTTGTGAATACTC+AGG | + | tig0019197:13414-13433 | None:intergenic | 40.0% | |
| GTGTCTCTCTCATCTTTGAC+TGG | - | tig0019197:9069-9088 | Msa1371300:three_prime_UTR | 45.0% | |
| !! | TAACATGGGAGCACCATTTG+AGG | - | tig0019197:9526-9545 | Msa1371300:CDS | 45.0% |
| !! | AACATGGGAGCACCATTTGA+GGG | - | tig0019197:9527-9546 | Msa1371300:CDS | 45.0% |
| TGTTCTCCGAAAGCAATGAC+CGG | + | tig0019197:9750-9769 | None:intergenic | 45.0% | |
| ! | TTGGCATCTACTGCCATTTG+TGG | - | tig0019197:9813-9832 | Msa1371300:intron | 45.0% |
| !! | GTACCAAGCTCTTTCTAGCT+TGG | - | tig0019197:9949-9968 | Msa1371300:intron | 45.0% |
| TGTGTTGCAGGGTTTGTGTT+TGG | - | tig0019197:10074-10093 | Msa1371300:intron | 45.0% | |
| TTGCAGGGTTTGTGTTTGGA+CGG | - | tig0019197:10078-10097 | Msa1371300:intron | 45.0% | |
| ATTGTTTGAACCACAGGGAC+TGG | - | tig0019197:10302-10321 | Msa1371300:CDS | 45.0% | |
| ! | CGACGAAGGATTTTCAACCT+TGG | + | tig0019197:10346-10365 | None:intergenic | 45.0% |
| AATTGCAATTCCTCCGACGA+AGG | + | tig0019197:10360-10379 | None:intergenic | 45.0% | |
| CGGAGGAATTGCAATTCCAA+TGG | - | tig0019197:10364-10383 | Msa1371300:CDS | 45.0% | |
| TTCCAATGGCGGTATACCAA+TGG | - | tig0019197:10378-10397 | Msa1371300:CDS | 45.0% | |
| ATCCATTGGTATACCGCCAT+TGG | + | tig0019197:10383-10402 | None:intergenic | 45.0% | |
| ! | TTCCAGTGATGGTAGTGTTG+TGG | - | tig0019197:10637-10656 | Msa1371300:CDS | 45.0% |
| TTCCAAGTGGTGTTCCTAGA+AGG | - | tig0019197:10691-10710 | Msa1371300:CDS | 45.0% | |
| AGTGGACAAAACAGCCTTCT+AGG | + | tig0019197:10708-10727 | None:intergenic | 45.0% | |
| TAAAGAGATGCAGGTTCCCA+GGG | + | tig0019197:10732-10751 | None:intergenic | 45.0% | |
| ATAAAGAGATGCAGGTTCCC+AGG | + | tig0019197:10733-10752 | None:intergenic | 45.0% | |
| GTCCAGTGATAAAGAGATGC+AGG | + | tig0019197:10741-10760 | None:intergenic | 45.0% | |
| CAAACTGCAGGATATGTGGA+AGG | - | tig0019197:11012-11031 | Msa1371300:intron | 45.0% | |
| AGACCTGCTATCATCAAAGC+TGG | + | tig0019197:11070-11089 | None:intergenic | 45.0% | |
| ACTCTGATATGTGGTCTCCT+TGG | - | tig0019197:11293-11312 | Msa1371300:intron | 45.0% | |
| TGTGGAAGGACTCCATTTGA+AGG | + | tig0019197:11326-11345 | None:intergenic | 45.0% | |
| TTTGTATGCATGGGAGACTG+TGG | + | tig0019197:11344-11363 | None:intergenic | 45.0% | |
| AGAGTTTGGCAGTTCTTAGG+AGG | - | tig0019197:11363-11382 | Msa1371300:CDS | 45.0% | |
| TCGGATCAGCTGCAAATCAA+TGG | + | tig0019197:11476-11495 | None:intergenic | 45.0% | |
| ATTTGCAGCTGATCCGAAAG+AGG | - | tig0019197:11479-11498 | Msa1371300:intron | 45.0% | |
| TTTGCAGCTGATCCGAAAGA+GGG | - | tig0019197:11480-11499 | Msa1371300:intron | 45.0% | |
| ! | CGCTTTTCACAACCCTCTTT+CGG | + | tig0019197:11495-11514 | None:intergenic | 45.0% |
| CTGTTGTTCCATGCATTCCT+TGG | + | tig0019197:11518-11537 | None:intergenic | 45.0% | |
| TCTTGAACAAGTCTCGTGTC+TGG | + | tig0019197:11651-11670 | None:intergenic | 45.0% | |
| TGATACCAAGGGTTGTGCAA+TGG | - | tig0019197:11754-11773 | Msa1371300:CDS | 45.0% | |
| ! | GGATACCTACCTCGGTTTTA+TGG | - | tig0019197:11903-11922 | Msa1371300:intron | 45.0% |
| TATCCCCATAAAACCGAGGT+AGG | + | tig0019197:11911-11930 | None:intergenic | 45.0% | |
| TCTTCCTGGGAATCAGTTCT+GGG | - | tig0019197:11955-11974 | Msa1371300:intron | 45.0% | |
| !! | ATTACTTGTAACGCCGGCTT+GGG | + | tig0019197:12006-12025 | None:intergenic | 45.0% |
| ! | AATTACTTGTAACGCCGGCT+TGG | + | tig0019197:12007-12026 | None:intergenic | 45.0% |
| TGGTACTGTCTCCACAAATG+AGG | + | tig0019197:12135-12154 | None:intergenic | 45.0% | |
| GTACCATTCAAGACCATAGC+TGG | - | tig0019197:12149-12168 | Msa1371300:CDS | 45.0% | |
| GACATACTACGTACTGCAGA+TGG | + | tig0019197:12365-12384 | None:intergenic | 45.0% | |
| CAGTACGTAGTATGTCACTC+AGG | - | tig0019197:12369-12388 | Msa1371300:CDS | 45.0% | |
| TGGATGAGATGACAACCAAC+AGG | - | tig0019197:12633-12652 | Msa1371300:CDS | 45.0% | |
| GGATGAGATGACAACCAACA+GGG | - | tig0019197:12634-12653 | Msa1371300:CDS | 45.0% | |
| GATGAGATGACAACCAACAG+GGG | - | tig0019197:12635-12654 | Msa1371300:CDS | 45.0% | |
| AAGTTTCAACTCTCCCCTGT+TGG | + | tig0019197:12651-12670 | None:intergenic | 45.0% | |
| AATATTCAGACAGCACCTCC+AGG | + | tig0019197:12894-12913 | None:intergenic | 45.0% | |
| ACTTCATGGCCAACTTAGGA+AGG | + | tig0019197:13168-13187 | None:intergenic | 45.0% | |
| GTGAACTTCATGGCCAACTT+AGG | + | tig0019197:13172-13191 | None:intergenic | 45.0% | |
| !! | GTTAGGTTGAGGGGAAAAGA+TGG | - | tig0019197:13202-13221 | Msa1371300:five_prime_UTR | 45.0% |
| AAAAAAAAGACGGGGGAGCA+AGG | - | tig0019197:13248-13267 | Msa1371300:five_prime_UTR | 45.0% | |
| CGTTTGTGAATACTCAGGTG+TGG | + | tig0019197:13409-13428 | None:intergenic | 45.0% | |
| !! | AAAAAATTAATAATCATAAA+AGG | + | tig0019197:9281-9300 | None:intergenic | 5.0% |
| TTTCCTCCTTCAGCTGTGAG+AGG | - | tig0019197:9499-9518 | Msa1371300:exon | 50.0% | |
| TTTCCTCTCACAGCTGAAGG+AGG | + | tig0019197:9505-9524 | None:intergenic | 50.0% | |
| ATTCTTTGCTTCCGCGCTTC+CGG | - | tig0019197:9728-9747 | Msa1371300:intron | 50.0% | |
| AAGAGCTTGGTACCCAGTTG+AGG | + | tig0019197:9942-9961 | None:intergenic | 50.0% | |
| AGCCCAAGCTAGAAAGAGCT+TGG | + | tig0019197:9955-9974 | None:intergenic | 50.0% | |
| !! | AAGCTCTTTCTAGCTTGGGC+TGG | - | tig0019197:9954-9973 | Msa1371300:intron | 50.0% |
| !! | TCTTTCTAGCTTGGGCTGGT+TGG | - | tig0019197:9958-9977 | Msa1371300:intron | 50.0% |
| ! | TTTGAACCACAGGGACTGGT+AGG | - | tig0019197:10306-10325 | Msa1371300:CDS | 50.0% |
| GGTTGAAAATCCTTCGTCGG+AGG | - | tig0019197:10347-10366 | Msa1371300:CDS | 50.0% | |
| TTCAATTCAGGGAGGCTACG+AGG | - | tig0019197:10594-10613 | Msa1371300:CDS | 50.0% | |
| GTCCACAACACTACCATCAC+TGG | + | tig0019197:10642-10661 | None:intergenic | 50.0% | |
| ! | AGCCTTCTAGGAACACCACT+TGG | + | tig0019197:10696-10715 | None:intergenic | 50.0% |
| !! | GCTGTTTTGTCCACTTCCCT+GGG | - | tig0019197:10713-10732 | Msa1371300:CDS | 50.0% |
| TCATAGCGTGGCTTCTCAGA+TGG | - | tig0019197:11102-11121 | Msa1371300:intron | 50.0% | |
| ! | GGTAGGCAGATGGCTTTTGA+AGG | + | tig0019197:11147-11166 | None:intergenic | 50.0% |
| CATTTGAAGGAGGAAGGCCA+AGG | + | tig0019197:11313-11332 | None:intergenic | 50.0% | |
| ! | CTTGGCCTTCCTCCTTCAAA+TGG | - | tig0019197:11311-11330 | Msa1371300:intron | 50.0% |
| GGACTCCATTTGAAGGAGGA+AGG | + | tig0019197:11319-11338 | None:intergenic | 50.0% | |
| GGAAGGACTCCATTTGAAGG+AGG | + | tig0019197:11323-11342 | None:intergenic | 50.0% | |
| TATGCATGGGAGACTGTGGA+AGG | + | tig0019197:11340-11359 | None:intergenic | 50.0% | |
| TTTGGCAGTTCTTAGGAGGC+AGG | - | tig0019197:11367-11386 | Msa1371300:CDS | 50.0% | |
| !! | GAAAAGCGCCAAGGAATGCA+TGG | - | tig0019197:11507-11526 | Msa1371300:intron | 50.0% |
| AGGTTCCATTGCACAACCCT+TGG | + | tig0019197:11762-11781 | None:intergenic | 50.0% | |
| CAATCAGGAGGGACTGCAAT+AGG | + | tig0019197:11850-11869 | None:intergenic | 50.0% | |
| CTATTGCAGTCCCTCCTGAT+TGG | - | tig0019197:11848-11867 | Msa1371300:CDS | 50.0% | |
| GTCTTCCTGGGAATCAGTTC+TGG | - | tig0019197:11954-11973 | Msa1371300:intron | 50.0% | |
| ! | CTTTCCCAGAACTGATTCCC+AGG | + | tig0019197:11962-11981 | None:intergenic | 50.0% |
| !! | CTGGGAATCAGTTCTGGGAA+AGG | - | tig0019197:11960-11979 | Msa1371300:intron | 50.0% |
| !! | TTACTTGTAACGCCGGCTTG+GGG | + | tig0019197:12005-12024 | None:intergenic | 50.0% |
| TGTTCTGTTTCGGGGTCACA+TGG | - | tig0019197:12201-12220 | Msa1371300:intron | 50.0% | |
| GTCACATGGATACCGATAGG+TGG | - | tig0019197:12215-12234 | Msa1371300:intron | 50.0% | |
| GTACTAGGGCAGATTTGACC+TGG | - | tig0019197:12873-12892 | Msa1371300:intron | 50.0% | |
| GGTACGAGAGTGAAAGGACA+AGG | - | tig0019197:13223-13242 | Msa1371300:five_prime_UTR | 50.0% | |
| TGGGTCTGCGCAATCTGTTC+CGG | - | tig0019197:9596-9615 | Msa1371300:CDS | 55.0% | |
| GAAAGCAATGACCGGAAGCG+CGG | + | tig0019197:9742-9761 | None:intergenic | 55.0% | |
| GCGCTTCCGGTCATTGCTTT+CGG | - | tig0019197:9741-9760 | Msa1371300:intron | 55.0% | |
| ATGCCTGACGACGTTCCAAG+TGG | - | tig0019197:10678-10697 | Msa1371300:CDS | 55.0% | |
| ACACCACTTGGAACGTCGTC+AGG | + | tig0019197:10684-10703 | None:intergenic | 55.0% | |
| !! | GGCTGTTTTGTCCACTTCCC+TGG | - | tig0019197:10712-10731 | Msa1371300:CDS | 55.0% |
| !! | GAGGGTTGTGAAAAGCGCCA+AGG | - | tig0019197:11498-11517 | Msa1371300:intron | 55.0% |
| CAGGAGGGACTGCAATAGGT+TGG | + | tig0019197:11846-11865 | None:intergenic | 55.0% | |
| GGGGTCACATGGATACCGAT+AGG | - | tig0019197:12212-12231 | Msa1371300:intron | 55.0% | |
| CTAGGGCAGATTTGACCTGG+AGG | - | tig0019197:12876-12895 | Msa1371300:intron | 55.0% | |
| GTGAGAGCAGTCCTCTTCAG+AGG | + | tig0019197:12962-12981 | None:intergenic | 55.0% | |
| GCGCAATCTGTTCCGGCGTT+AGG | - | tig0019197:9603-9622 | Msa1371300:CDS | 60.0% | |
| AACTCGCCTACCAGTCCCTG+TGG | + | tig0019197:10315-10334 | None:intergenic | 60.0% | |
| AGGCGAGTTCAGCACTCCCA+AGG | - | tig0019197:10326-10345 | Msa1371300:CDS | 60.0% | |
| GATGCAGGTTCCCAGGGAAG+TGG | + | tig0019197:10726-10745 | None:intergenic | 60.0% | |
| TCCTCTTCGTCACCCCAAGC+CGG | - | tig0019197:11990-12009 | Msa1371300:intron | 60.0% | |
| !! | GCCGGCTTGGGGTGACGAAG+AGG | + | tig0019197:11994-12013 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019197 | gene | 9052 | 13464 | 9052 | ID=Msa1371300;Name=Msa1371300 |
| tig0019197 | mRNA | 9052 | 13464 | 9052 | ID=Msa1371300-mRNA-1;Parent=Msa1371300;Name=Msa1371300-mRNA-1;_AED=0.11;_eAED=0.11;_QI=478|0.90|0.91|1|1|1|12|462|682 |
| tig0019197 | exon | 9052 | 9636 | 9052 | ID=Msa1371300-mRNA-1:exon:2256;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 9840 | 9947 | 9840 | ID=Msa1371300-mRNA-1:exon:2255;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 10125 | 10404 | 10125 | ID=Msa1371300-mRNA-1:exon:2254;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 10496 | 10803 | 10496 | ID=Msa1371300-mRNA-1:exon:2253;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 10913 | 11029 | 10913 | ID=Msa1371300-mRNA-1:exon:2252;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 11128 | 11223 | 11128 | ID=Msa1371300-mRNA-1:exon:2251;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 11321 | 11494 | 11321 | ID=Msa1371300-mRNA-1:exon:2250;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 11746 | 11912 | 11746 | ID=Msa1371300-mRNA-1:exon:2249;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 12033 | 12198 | 12033 | ID=Msa1371300-mRNA-1:exon:2248;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 12294 | 12432 | 12294 | ID=Msa1371300-mRNA-1:exon:2247;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 12537 | 12812 | 12537 | ID=Msa1371300-mRNA-1:exon:2246;Parent=Msa1371300-mRNA-1 |
| tig0019197 | exon | 12892 | 13464 | 12892 | ID=Msa1371300-mRNA-1:exon:2245;Parent=Msa1371300-mRNA-1 |
| tig0019197 | five_prime_UTR | 12987 | 13464 | 12987 | ID=Msa1371300-mRNA-1:five_prime_utr;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 12892 | 12986 | 12892 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 12537 | 12812 | 12537 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 12294 | 12432 | 12294 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 12033 | 12198 | 12033 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 11746 | 11912 | 11746 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 11321 | 11494 | 11321 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 11128 | 11223 | 11128 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 10913 | 11029 | 10913 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 10496 | 10803 | 10496 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 10125 | 10404 | 10125 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 9840 | 9947 | 9840 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | CDS | 9514 | 9636 | 9514 | ID=Msa1371300-mRNA-1:cds;Parent=Msa1371300-mRNA-1 |
| tig0019197 | three_prime_UTR | 9052 | 9513 | 9052 | ID=Msa1371300-mRNA-1:three_prime_utr;Parent=Msa1371300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
