AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1330220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330220 MtrunA17_Chr4g0058021 99.004 703 7 0 1 703 1 703 0.0 1419
Msa1330220 MtrunA17_Chr6g0465321 56.592 622 256 5 86 696 22 640 0.0 684
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1330220 AT5G63190.2 75.356 702 169 4 1 700 1 700 0.0 1064
Msa1330220 AT5G63190.1 75.356 702 169 4 1 700 1 700 0.0 1064
Msa1330220 AT4G24800.4 74.856 696 171 3 5 699 2 694 0.0 1025
Msa1330220 AT4G24800.1 74.856 696 171 3 5 699 2 694 0.0 1025
Msa1330220 AT4G24800.3 74.856 696 171 3 5 699 2 694 0.0 1025
Msa1330220 AT4G24800.2 74.856 696 171 3 5 699 2 694 0.0 1025
Msa1330220 AT3G48390.1 72.442 606 162 2 96 700 30 631 0.0 900
Msa1330220 AT1G22730.1 50.000 642 285 9 78 698 51 677 0.0 599

Find 246 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAATCCAGCTGGTGAAAA+TGG 0.176893 8_4:+49376436 Msa1330220:CDS
ACCTCGCCACTATCATAATT+TGG 0.193734 8_4:-49375204 None:intergenic
TCAACAGAGGATATTGTTAA+TGG 0.233545 8_4:+49376697 Msa1330220:CDS
TTCTCTCACACCACCGTTTA+GGG 0.264837 8_4:+49373206 Msa1330220:five_prime_UTR
GTTTCACTACCACTGCATTT+TGG 0.266094 8_4:-49376865 None:intergenic
TTTCTCTCACACCACCGTTT+AGG 0.281492 8_4:+49373205 Msa1330220:five_prime_UTR
TCCTGTCTTGGCTCGAGATC+CGG 0.290952 8_4:+49373291 Msa1330220:five_prime_UTR
GTGCTGGTGGTAAGGGCACT+TGG 0.296945 8_4:+49375133 Msa1330220:CDS
CAGTAATGGGGATGTTGATT+TGG 0.304435 8_4:+49375637 Msa1330220:CDS
CGGTCGCATTCTGGAAAGTT+AGG 0.310044 8_4:+49373866 Msa1330220:CDS
CGTTGTTGCAGTTTCCGATT+TGG 0.319807 8_4:+49373252 Msa1330220:five_prime_UTR
TCAAACTAAACTTGATCTAA+TGG 0.320789 8_4:-49377603 None:intergenic
TAAAGGATTCACCCGGATTA+AGG 0.323279 8_4:+49377197 Msa1330220:CDS
TTCCACCAGCCTTTCTTGCC+AGG 0.329884 8_4:+49375930 Msa1330220:CDS
TGACATCCTTGCTTTATTCC+TGG 0.334192 8_4:+49375883 Msa1330220:CDS
ACGTGACGTGTTTGTGTTAT+TGG 0.336667 8_4:+49373653 Msa1330220:five_prime_UTR
CGTGACGTGTTTGTGTTATT+GGG 0.337853 8_4:+49373654 Msa1330220:five_prime_UTR
TAGATGAATACTTCAGTAAT+GGG 0.339593 8_4:+49375624 Msa1330220:CDS
TGCTGGTGGTAAGGGCACTT+GGG 0.342359 8_4:+49375134 Msa1330220:CDS
GAGGTTAATAACACTTGCTT+TGG 0.344003 8_4:+49376609 Msa1330220:CDS
ACAAGTCGCTTAATGAAGTA+TGG 0.352741 8_4:-49375701 None:intergenic
CCATTGAAGATGGGATAATC+TGG 0.355011 8_4:+49377372 Msa1330220:three_prime_UTR
CAGGGCAAGGAAGGCTCTTC+CGG 0.356489 8_4:+49375949 Msa1330220:CDS
CACTGAGGTTCCTGTTACTT+CGG 0.357470 8_4:+49377457 Msa1330220:three_prime_UTR
GCTGGTGGTAAGGGCACTTG+GGG 0.362041 8_4:+49375135 Msa1330220:CDS
CACTTGAGCCAAGTTCTCTT+AGG 0.362449 8_4:-49375670 None:intergenic
TTTACAATGACCGAAGTAAC+AGG 0.366531 8_4:-49377467 None:intergenic
AGATACAACGCTGGATATAC+TGG 0.366558 8_4:+49376747 Msa1330220:CDS
CCATTGAACTTGGATGAAAT+TGG 0.368898 8_4:+49376829 Msa1330220:CDS
CATTAGTCCCACACAGATTA+GGG 0.370644 8_4:+49375799 Msa1330220:CDS
ATGAAAATGCAAATCGGAAC+TGG 0.379767 8_4:-49373331 None:intergenic
CTTAAAGAATATGTTGATAG+TGG 0.380631 8_4:+49376115 Msa1330220:CDS
TCATTAGTCCCACACAGATT+AGG 0.381188 8_4:+49375798 Msa1330220:CDS
AGTAGTTCCAACCAGCTCAT+AGG 0.384481 8_4:-49375555 None:intergenic
GAATGTGAGGAAGTACAAAA+AGG 0.386583 8_4:+49376480 Msa1330220:CDS
TCTAGGCTTCGAATGAGTTC+AGG 0.390486 8_4:-49376547 None:intergenic
CCAATCCAGCTGGTGAAAAT+GGG 0.390549 8_4:+49376437 Msa1330220:CDS
GGCTATTGAGATGCTGGGGC+GGG 0.391205 8_4:+49376935 Msa1330220:CDS
CATCAAGACCCTCCTTAATC+CGG 0.394068 8_4:-49377209 None:intergenic
GAGAAAACCCTTTCACCATT+TGG 0.394077 8_4:-49376303 None:intergenic
CCAATTTCATCCAAGTTCAA+TGG 0.400298 8_4:-49376829 None:intergenic
CCTGTCTTGGCTCGAGATCC+GGG 0.403205 8_4:+49373292 Msa1330220:five_prime_UTR
GTGAAAGGCTATTGAGATGC+TGG 0.406948 8_4:+49376929 Msa1330220:CDS
CTTCCTTGCCCTGGCAAGAA+AGG 0.407487 8_4:-49375939 None:intergenic
CATCCTTCAGATATTGCCTT+GGG 0.409887 8_4:-49376397 None:intergenic
GGGAACTGGATGGGCTGTGG+AGG 0.411357 8_4:+49376957 Msa1330220:CDS
CAATTTCATCCAAGTTCAAT+GGG 0.413224 8_4:-49376828 None:intergenic
TCAGCTCCCTTGGAAGATTC+CGG 0.416092 8_4:-49375968 None:intergenic
TCCACTGTCTTCTCCTGTCT+TGG 0.416678 8_4:+49373279 Msa1330220:five_prime_UTR
CTTGCCCTGGCAAGAAAGGC+TGG 0.425041 8_4:-49375935 None:intergenic
AAAGTTAGGGCGGGCTAAGA+AGG 0.432147 8_4:+49373880 Msa1330220:CDS
CCAGATTATCCCATCTTCAA+TGG 0.433032 8_4:-49377372 None:intergenic
TAAGGAGGGTCTTGATGATC+TGG 0.435168 8_4:+49377215 Msa1330220:CDS
GGTGGTAAGGCACAGACTGC+TGG 0.438468 8_4:+49373821 Msa1330220:CDS
CAGGTGCTCCAAGATCTTCT+AGG 0.438853 8_4:-49376564 None:intergenic
CTTGACTACCTCAGCTCCCT+TGG 0.439299 8_4:-49375978 None:intergenic
AAACCCTTTCACCATTTGGC+TGG 0.441435 8_4:-49376299 None:intergenic
AGTTTGAAAGATATATCAAT+TGG 0.443081 8_4:+49377619 Msa1330220:three_prime_UTR
TGCAGATGGTGCTGGTGGTA+AGG 0.445986 8_4:+49375125 Msa1330220:intron
CATTTACTCTCTCTGGATGA+AGG 0.447288 8_4:+49377556 Msa1330220:three_prime_UTR
ATGTCAAGTAAAAGAGCAAA+TGG 0.449255 8_4:-49377416 None:intergenic
CCATGGAGAAGAAGAATGAT+AGG 0.451295 8_4:+49377115 Msa1330220:CDS
CTCTCTTCTGCTCGTCATGC+AGG 0.451990 8_4:+49376907 Msa1330220:CDS
TTTAACAGCTTCAACAGTAA+AGG 0.452533 8_4:-49376247 None:intergenic
ATTCGAAGCCTAGAAGATCT+TGG 0.457110 8_4:+49376556 Msa1330220:CDS
TACTGAAGTATTCATCTATG+AGG 0.457447 8_4:-49375619 None:intergenic
TGTACTTGCCCCATTGAACT+TGG 0.458146 8_4:+49376819 Msa1330220:CDS
TGTTTGTGTTATTGGGGAAA+TGG 0.461990 8_4:+49373661 Msa1330220:exon
AATGATCCAAATTATGATAG+TGG 0.464061 8_4:+49375198 Msa1330220:CDS
GAACTGGAATCTTCTGTGCT+TGG 0.465184 8_4:-49373315 None:intergenic
AACTACTGTTACTGACCCCT+TGG 0.468009 8_4:+49375571 Msa1330220:CDS
GCTTCCTTTGCCAATCCAGC+TGG 0.468039 8_4:+49376427 Msa1330220:CDS
AGTGAAGAAAGCTTTGGTTA+TGG 0.470878 8_4:+49377092 Msa1330220:CDS
CTTTCTTGCCAGGGCAAGGA+AGG 0.472429 8_4:+49375940 Msa1330220:CDS
GAATCTCCATGGCAAGTACC+AGG 0.474177 8_4:-49376213 None:intergenic
TCACATTCTCATCTTCAACT+TGG 0.474950 8_4:-49376465 None:intergenic
CAAAGCTCCTGCTGGTGGTA+AGG 0.478498 8_4:+49373808 Msa1330220:CDS
GGGTCTTGATGATCTGGCTC+TGG 0.479384 8_4:+49377221 Msa1330220:CDS
GCTATTGAGATGCTGGGGCG+GGG 0.479576 8_4:+49376936 Msa1330220:CDS
GGCAATGGACAGGCATGATA+AGG 0.480888 8_4:+49375730 Msa1330220:CDS
CCATCACGAGGTTGTGAAGA+AGG 0.481692 8_4:+49376189 Msa1330220:CDS
CCCGGATCTCGAGCCAAGAC+AGG 0.482662 8_4:-49373292 None:intergenic
GCAGATGGTGCTGGTGGTAA+GGG 0.484044 8_4:+49375126 Msa1330220:intron
TGCCAGTGTATTCGTGACTT+GGG 0.484187 8_4:+49377045 Msa1330220:CDS
CGGAAGAGCCTTCCTTGCCC+TGG 0.485045 8_4:-49375948 None:intergenic
TGTTGTCCTCCCATTGAAGA+TGG 0.487299 8_4:+49377362 Msa1330220:three_prime_UTR
TCCACCAGCCTTTCTTGCCA+GGG 0.488180 8_4:+49375931 Msa1330220:CDS
TGCTTTCTTGAATTCATCCA+AGG 0.489968 8_4:-49375588 None:intergenic
TGAGGTAGTGAAGAAAGCTT+TGG 0.490667 8_4:+49377086 Msa1330220:CDS
GCGACTTGTTTCCATGGCAA+TGG 0.493441 8_4:+49375715 Msa1330220:CDS
GAATCCTTTAGTCAGCTGAT+TGG 0.493942 8_4:-49377184 None:intergenic
TGATCTTGCAGTGGATATCC+TGG 0.494069 8_4:+49375853 Msa1330220:CDS
GAAAGCTTTGGTTATGGCCA+TGG 0.496815 8_4:+49377098 Msa1330220:CDS
GGTCGCATTCTGGAAAGTTA+GGG 0.496864 8_4:+49373867 Msa1330220:CDS
CTGCAGGAGTGCTTCAGTGA+AGG 0.497405 8_4:+49377150 Msa1330220:CDS
GTTTCTGTCATTTGTCCCCA+AGG 0.498120 8_4:+49376381 Msa1330220:CDS
AGTGAAATGAAAATGCAAAT+CGG 0.499101 8_4:-49373337 None:intergenic
CCTATCATTCTTCTTCTCCA+TGG 0.499101 8_4:-49377115 None:intergenic
ATGCCAGTGTATTCGTGACT+TGG 0.499296 8_4:+49377044 Msa1330220:CDS
GGAATCTTCTGTGCTTGGCC+CGG 0.500460 8_4:-49373310 None:intergenic
GAAGAAGAATGATAGGATGC+TGG 0.500749 8_4:+49377122 Msa1330220:CDS
GGACAAGATCACAAAGCTCT+TGG 0.504142 8_4:+49376987 Msa1330220:CDS
TTGCTAGACATCTGGGGCAG+AGG 0.506298 8_4:-49377325 None:intergenic
TTTATAGGAACCCTATGAGC+TGG 0.506672 8_4:+49375544 Msa1330220:intron
AAAGAACAGAGAAAAGGAAA+TGG 0.507361 8_4:+49376636 Msa1330220:CDS
CAGCCTTTCTTGCCAGGGCA+AGG 0.508041 8_4:+49375936 Msa1330220:CDS
GCATCTGACCTAAGAGAACT+TGG 0.508510 8_4:+49375662 Msa1330220:CDS
ATAGATGAATACTTCAGTAA+TGG 0.511492 8_4:+49375623 Msa1330220:CDS
TGTAGGTGTATACGTGAGTT+GGG 0.511836 8_4:+49376154 Msa1330220:CDS
TTGTTTCCATGGCAATGGAC+AGG 0.512207 8_4:+49375720 Msa1330220:CDS
GTAGTTCCAACCAGCTCATA+GGG 0.512875 8_4:-49375554 None:intergenic
CTTGTGGATGCAGATGGTGC+TGG 0.513272 8_4:+49375117 Msa1330220:intron
TCCACAAGTTCTGCATGGTG+TGG 0.514197 8_4:-49376028 None:intergenic
GTTCCAGCCAAATGGTGAAA+GGG 0.516399 8_4:+49376296 Msa1330220:CDS
CAGATTATCCCATCTTCAAT+GGG 0.516688 8_4:-49377371 None:intergenic
ACTGATTAGTTCCAGCCAAA+TGG 0.516854 8_4:+49376288 Msa1330220:CDS
CAACTCACGTATACACCTAC+AGG 0.516859 8_4:-49376152 None:intergenic
AAGAATATCGAAACCCTAAA+CGG 0.517598 8_4:-49373219 None:intergenic
GGCTCTTCCGGAATCTTCCA+AGG 0.517641 8_4:+49375961 Msa1330220:CDS
GCATGATAAGGAGAAAGAAA+TGG 0.518042 8_4:+49375742 Msa1330220:CDS
AACAGTAAAGGTTCTGCTGA+AGG 0.520154 8_4:-49376235 None:intergenic
TCTCTGGATGAAGGGTCTGT+TGG 0.520349 8_4:+49377565 Msa1330220:three_prime_UTR
AATGGGAGGACAACATGCCC+TGG 0.520676 8_4:-49377354 None:intergenic
CTATATGAAGTGCAGATAGC+AGG 0.521385 8_4:-49376666 None:intergenic
CCATCCTTCAGATATTGCCT+TGG 0.522923 8_4:-49376398 None:intergenic
AGCTGAGAGATAGCTCTTCT+CGG 0.523111 8_4:-49376005 None:intergenic
TATCAAGAGCAAGATCATCT+AGG 0.523207 8_4:-49376339 None:intergenic
GGACCGAAAGAACAGAGAAA+AGG 0.523465 8_4:+49376630 Msa1330220:CDS
CTATTGAGATGCTGGGGCGG+GGG 0.523618 8_4:+49376937 Msa1330220:CDS
AGCAATGTCGACGGCGACTT+AGG 0.524812 8_4:-49373767 None:intergenic
CTGTAGGTGTATACGTGAGT+TGG 0.525164 8_4:+49376153 Msa1330220:CDS
CTCTTGGAGGAGTATGAAAG+TGG 0.525404 8_4:+49377003 Msa1330220:CDS
CATCACATCAAAGCTCCTGC+TGG 0.525516 8_4:+49373800 Msa1330220:CDS
CATTAAGCGACTTGTTTCCA+TGG 0.528753 8_4:+49375709 Msa1330220:CDS
CATTGAAGATGGGATAATCT+GGG 0.529614 8_4:+49377373 Msa1330220:three_prime_UTR
TGAAAGGCTATTGAGATGCT+GGG 0.533761 8_4:+49376930 Msa1330220:CDS
GTGGTAAGGCACAGACTGCT+GGG 0.533927 8_4:+49373822 Msa1330220:CDS
GAAGGCCCTGGTACTTGCCA+TGG 0.534434 8_4:+49376207 Msa1330220:CDS
AGAAACAAGGCTTTAGCTGA+TGG 0.535614 8_4:-49376364 None:intergenic
CAAGATCACAAAGCTCTTGG+AGG 0.537964 8_4:+49376990 Msa1330220:CDS
CAAGGATGTCAACTGCATCC+AGG 0.537979 8_4:-49375871 None:intergenic
GCTTTCTTGAATTCATCCAA+GGG 0.546570 8_4:-49375587 None:intergenic
TCACATTAAGCATGCATAGG+TGG 0.548352 8_4:-49377699 None:intergenic
ATCAAGACCCTCCTTAATCC+GGG 0.549632 8_4:-49377208 None:intergenic
TCCTTTAGTCAGCTGATTGG+TGG 0.549699 8_4:-49377181 None:intergenic
TTAAAAGAAGCAGCAGCAGA+AGG 0.550137 8_4:+49376265 Msa1330220:CDS
AGTTCCAGCCAAATGGTGAA+AGG 0.550968 8_4:+49376295 Msa1330220:CDS
AGGCTATTGAGATGCTGGGG+CGG 0.551446 8_4:+49376934 Msa1330220:CDS
ATTTACTCTCTCTGGATGAA+GGG 0.553536 8_4:+49377557 Msa1330220:three_prime_UTR
CGCATTCTGGAAAGTTAGGG+CGG 0.554864 8_4:+49373870 Msa1330220:CDS
TTCACCAGCTGGATTGGCAA+AGG 0.554928 8_4:-49376431 None:intergenic
GGGGAAATGGCGTCGAACGA+GGG 0.561534 8_4:+49373674 Msa1330220:exon
CACATTAAGCATGCATAGGT+GGG 0.561667 8_4:-49377698 None:intergenic
ACCACCAATCAGCTGACTAA+AGG 0.562228 8_4:+49377180 Msa1330220:CDS
ATGGGCTGTGGAGGATGCTA+AGG 0.562248 8_4:+49376966 Msa1330220:CDS
GTCTGTGCCTTACCACCAGC+AGG 0.563393 8_4:-49373815 None:intergenic
ACTACCTCATGGTTGAAGAA+AGG 0.564053 8_4:-49377072 None:intergenic
AAGTTAGGGCGGGCTAAGAA+GGG 0.565574 8_4:+49373881 Msa1330220:CDS
CAGGATAATGTTGCATCAAG+AGG 0.565584 8_4:+49377519 Msa1330220:three_prime_UTR
CCTTCTTCACAACCTCGTGA+TGG 0.565630 8_4:-49376189 None:intergenic
CTGGTGGTAAGGGCACTTGG+GGG 0.567812 8_4:+49375136 Msa1330220:CDS
AAACGGTGGTGTGAGAGAAA+CGG 0.568099 8_4:-49373202 None:intergenic
AAGCTTTCTTCACTACCTCA+TGG 0.568149 8_4:-49377083 None:intergenic
TGATGGTAGAAGCCACCCCT+TGG 0.570649 8_4:-49377295 None:intergenic
TAGGAACCCTATGAGCTGGT+TGG 0.572366 8_4:+49375548 Msa1330220:intron
CATCAACAACAGCACGTGCC+AGG 0.573372 8_4:-49375901 None:intergenic
CTGCTCGTCATGCAGGTGAA+AGG 0.573520 8_4:+49376914 Msa1330220:CDS
TGGGGAAATGGCGTCGAACG+AGG 0.577450 8_4:+49373673 Msa1330220:exon
GTCTTTCCACAAGTTCTGCA+TGG 0.577504 8_4:-49376033 None:intergenic
CCTATGCATGCTTAATGTGA+TGG 0.577811 8_4:+49377702 Msa1330220:three_prime_UTR
GTGGAGCATGCACAGACCAA+GGG 0.578585 8_4:+49377279 Msa1330220:CDS
AATCCATCCCTAATCTGTGT+GGG 0.579210 8_4:-49375806 None:intergenic
TGGTAGTGAAACTGTGCGTA+TGG 0.580211 8_4:+49376876 Msa1330220:CDS
CGAGGTTGTGAAGAAGGCCC+TGG 0.585050 8_4:+49376195 Msa1330220:CDS
GAAAATTGGAGACCGAAACC+AGG 0.585352 8_4:-49377658 None:intergenic
ATCATGCCTGTCCATTGCCA+TGG 0.586529 8_4:-49375726 None:intergenic
AGTCCCACACAGATTAGGGA+TGG 0.587668 8_4:+49375803 Msa1330220:CDS
GTCCCCAAGGCAATATCTGA+AGG 0.590596 8_4:+49376394 Msa1330220:CDS
TCCACACCATGCAGAACTTG+TGG 0.592118 8_4:+49376027 Msa1330220:CDS
GTTGTCCTCCCATTGAAGAT+GGG 0.597276 8_4:+49377363 Msa1330220:three_prime_UTR
ACTGAAGTATTCATCTATGA+GGG 0.597331 8_4:-49375618 None:intergenic
TAGGATGCTGGATTTGCTGC+AGG 0.597535 8_4:+49377134 Msa1330220:CDS
TTCTGCTGAAGGAATCTCCA+TGG 0.597635 8_4:-49376224 None:intergenic
CCAAGGCAATATCTGAAGGA+TGG 0.597668 8_4:+49376398 Msa1330220:CDS
CAGAACTTGTGGAAAGACGA+TGG 0.601439 8_4:+49376038 Msa1330220:CDS
TCAGCTGATTGGTGGTGATG+AGG 0.602174 8_4:-49377173 None:intergenic
CAATCCAGCTGGTGAAAATG+GGG 0.602846 8_4:+49376438 Msa1330220:CDS
GTGACGTGTTTGTGTTATTG+GGG 0.603994 8_4:+49373655 Msa1330220:five_prime_UTR
CCATCACATTAAGCATGCAT+AGG 0.607095 8_4:-49377702 None:intergenic
AAATCCATCCCTAATCTGTG+TGG 0.607645 8_4:-49375807 None:intergenic
GGGGCAGAGGAATCAAATGA+TGG 0.608075 8_4:-49377312 None:intergenic
CACATCAAAGCTCCTGCTGG+TGG 0.608523 8_4:+49373803 Msa1330220:CDS
GCATTCTGGAAAGTTAGGGC+GGG 0.610221 8_4:+49373871 Msa1330220:CDS
ATGGGAGGACAACATGCCCT+GGG 0.612334 8_4:-49377353 None:intergenic
GATGTCTAGCAAAACTACCC+AGG 0.613108 8_4:+49377336 Msa1330220:exon
TGTGGAGCATGCACAGACCA+AGG 0.614176 8_4:+49377278 Msa1330220:CDS
GGATTCACCCGGATTAAGGA+GGG 0.622780 8_4:+49377201 Msa1330220:CDS
TTGTGAAAGTGATGAATCGG+TGG 0.625302 8_4:-49373154 None:intergenic
AGAACTTGTGGAAAGACGAT+GGG 0.626205 8_4:+49376039 Msa1330220:CDS
ATCTGCTGATGATCTTGCAG+TGG 0.629980 8_4:+49375844 Msa1330220:CDS
TATCATAATTTGGATCATTG+CGG 0.630208 8_4:-49375194 None:intergenic
GCCAGTGTATTCGTGACTTG+GGG 0.631751 8_4:+49377046 Msa1330220:CDS
CTTTCTTGAATTCATCCAAG+GGG 0.633512 8_4:-49375586 None:intergenic
AGTTGCATTCTTCCATCACG+AGG 0.633964 8_4:+49376177 Msa1330220:CDS
TTGCTGTGAGGCATGTGCGT+CGG 0.634726 8_4:+49373846 Msa1330220:CDS
ATGTCTAGCAAAACTACCCA+GGG 0.636767 8_4:+49377337 Msa1330220:exon
TCTTGGAGGAGTATGAAAGT+GGG 0.639560 8_4:+49377004 Msa1330220:CDS
GCTCTTCCGGAATCTTCCAA+GGG 0.641419 8_4:+49375962 Msa1330220:CDS
AAATGCTGAAGATACAACGC+TGG 0.642106 8_4:+49376738 Msa1330220:CDS
GTGGATGCAGATGGTGCTGG+TGG 0.644646 8_4:+49375120 Msa1330220:intron
TATAGAGATATTCTCAACAG+AGG 0.644683 8_4:+49376684 Msa1330220:CDS
GGAATCTTCCAAGGGAGCTG+AGG 0.644900 8_4:+49375970 Msa1330220:CDS
AAGTAAAAGAGCAAATGGAA+AGG 0.644978 8_4:-49377411 None:intergenic
TCTGGACATTCCAAACGCCA+AGG 0.645925 8_4:+49377239 Msa1330220:CDS
TAATCTGGGATTGTTTGACA+TGG 0.648822 8_4:+49377387 Msa1330220:three_prime_UTR
CACGTGCCAGGAATAAAGCA+AGG 0.649502 8_4:-49375889 None:intergenic
TGGAGGAGTATGAAAGTGGG+GGG 0.649814 8_4:+49377007 Msa1330220:CDS
TTGGAGGAGTATGAAAGTGG+GGG 0.650081 8_4:+49377006 Msa1330220:CDS
CTTGGAGGAGTATGAAAGTG+GGG 0.653649 8_4:+49377005 Msa1330220:CDS
AAGTTGAAGATGAGAATGTG+AGG 0.655201 8_4:+49376467 Msa1330220:CDS
GCCAAGACAGGAGAAGACAG+TGG 0.655220 8_4:-49373280 None:intergenic
ATTATCCCATCTTCAATGGG+AGG 0.656417 8_4:-49377368 None:intergenic
GGAGGAGTATGAAAGTGGGG+GGG 0.657610 8_4:+49377008 Msa1330220:CDS
GCCCTGGCAAGAAAGGCTGG+TGG 0.659425 8_4:-49375932 None:intergenic
AGCATGCACAGACCAAGGGG+TGG 0.663824 8_4:+49377283 Msa1330220:CDS
TCTTCTAGATCATTTCACTG+AGG 0.665538 8_4:+49377442 Msa1330220:three_prime_UTR
AGCTGACTAAAGGATTCACC+CGG 0.666003 8_4:+49377190 Msa1330220:CDS
GGATGAATTCAAGAAAGCAG+TGG 0.666447 8_4:+49375592 Msa1330220:CDS
AAAGTGATGAATCGGTGGAA+AGG 0.668878 8_4:-49373149 None:intergenic
AGATGAATACTTCAGTAATG+GGG 0.676923 8_4:+49375625 Msa1330220:CDS
AATCTCCATGGCAAGTACCA+GGG 0.677633 8_4:-49376212 None:intergenic
GAAAGGCTATTGAGATGCTG+GGG 0.679754 8_4:+49376931 Msa1330220:CDS
GCGAGACACTTGAAGCCTGT+AGG 0.680196 8_4:+49376137 Msa1330220:CDS
TGGAGCATGCACAGACCAAG+GGG 0.681884 8_4:+49377280 Msa1330220:CDS
TGATCAGCAAGCAATGTCGA+CGG 0.684900 8_4:-49373776 None:intergenic
CTTGTGGAAAGACGATGGGG+TGG 0.687294 8_4:+49376043 Msa1330220:CDS
TCCCCAAGTCACGAATACAC+TGG 0.687638 8_4:-49377047 None:intergenic
GGGGACAAATGACAGAAACA+AGG 0.689119 8_4:-49376377 None:intergenic
ATCCTTCAGATATTGCCTTG+GGG 0.691723 8_4:-49376396 None:intergenic
AGACTGCTGGGATTGCTGTG+AGG 0.694684 8_4:+49373834 Msa1330220:CDS
AGACTACCACCAAAATGCAG+TGG 0.698145 8_4:+49376856 Msa1330220:CDS
TCCAAATTATGATAGTGGCG+AGG 0.698403 8_4:+49375203 Msa1330220:CDS
GATGCCTTTCTTCAACCATG+AGG 0.721876 8_4:+49377068 Msa1330220:CDS
AATATCGAAACCCTAAACGG+TGG 0.740443 8_4:-49373216 None:intergenic
AATTTCATCCAAGTTCAATG+GGG 0.741522 8_4:-49376827 None:intergenic
GAACTTGTGGAAAGACGATG+GGG 0.755832 8_4:+49376040 Msa1330220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTTCTTTGATT+TGG + chr8_4:49373410-49373429 Msa1330220:intron 10.0%
!! TTTATACATATTAGTTATAA+CGG + chr8_4:49374371-49374390 Msa1330220:intron 10.0%
!! TTTATACATATAAGTTATAA+CGG + chr8_4:49374473-49374492 Msa1330220:intron 10.0%
!! GAAAATAATTTATACATATA+AGG + chr8_4:49374465-49374484 Msa1330220:intron 10.0%
!! TAGTATATATTTAGATGAAT+AGG + chr8_4:49374059-49374078 Msa1330220:intron 15.0%
!!! TAAATTATTTTCCTAAAAAG+TGG - chr8_4:49374355-49374374 None:intergenic 15.0%
!!! TAAATTATTTTCCTAAAAAG+TGG - chr8_4:49374355-49374374 None:intergenic 15.0%
!!! TAAATTATTTTCCTAAAAAG+TGG - chr8_4:49374355-49374374 None:intergenic 15.0%
!! TTTATACATATAAGGTATAA+CGG + chr8_4:49374575-49374594 Msa1330220:intron 15.0%
!!! TTACCAATTGTTTTTTTTAA+TGG + chr8_4:49375063-49375082 Msa1330220:intron 15.0%
!!! ATTATTTCTGTTATTTCTTG+CGG + chr8_4:49373517-49373536 Msa1330220:intron 20.0%
!!! TAGGATTTTCAAAGTTTATT+CGG + chr8_4:49374090-49374109 Msa1330220:intron 20.0%
!! AGTGAATTTACAAGAAATTT+AGG - chr8_4:49374926-49374945 None:intergenic 20.0%
!!! TTTGGATAATTTTCATAAAC+TGG + chr8_4:49374957-49374976 Msa1330220:intron 20.0%
!! AGACCATTAAAAAAAACAAT+TGG - chr8_4:49375069-49375088 None:intergenic 20.0%
!!! TTTTATCATTCTGATTTTGT+TGG + chr8_4:49375236-49375255 Msa1330220:intron 20.0%
!! CAAACTATCTTAAAAAAAGA+TGG + chr8_4:49375332-49375351 Msa1330220:intron 20.0%
!! TTAACCTCTTCAAAAATATT+GGG - chr8_4:49376597-49376616 None:intergenic 20.0%
!! ATTAACCTCTTCAAAAATAT+TGG - chr8_4:49376598-49376617 None:intergenic 20.0%
!! AGTTTGAAAGATATATCAAT+TGG + chr8_4:49377619-49377638 Msa1330220:three_prime_UTR 20.0%
!! TTTTTGTGAAAGTGATGAAT+CGG - chr8_4:49373160-49373179 None:intergenic 25.0%
! AGTGAAATGAAAATGCAAAT+CGG - chr8_4:49373340-49373359 None:intergenic 25.0%
! ATGTTAATGCTGTTATTGAT+AGG + chr8_4:49373627-49373646 Msa1330220:intron 25.0%
!! TAAGCTGTAGTATTTTACTT+AGG + chr8_4:49373980-49373999 Msa1330220:intron 25.0%
!! AGGATTTTCAAAGTTTATTC+GGG + chr8_4:49374091-49374110 Msa1330220:intron 25.0%
!!! TTACTTTATTTCGTCTTTTG+CGG + chr8_4:49374150-49374169 Msa1330220:intron 25.0%
!!! GTTATTGTTTCTGATAAATG+TGG + chr8_4:49374226-49374245 Msa1330220:intron 25.0%
!!! AAGTCATTCATTATTTCTGA+AGG + chr8_4:49374722-49374741 Msa1330220:intron 25.0%
! GTAATAGTGTTAACTAAACT+AGG - chr8_4:49374767-49374786 None:intergenic 25.0%
! ATTCACTTGCACATATTATT+TGG + chr8_4:49374939-49374958 Msa1330220:intron 25.0%
! TATCATAATTTGGATCATTG+CGG - chr8_4:49375197-49375216 None:intergenic 25.0%
! AATGATCCAAATTATGATAG+TGG + chr8_4:49375198-49375217 Msa1330220:CDS 25.0%
! TACAGAAGAGTTAACAATAT+GGG - chr8_4:49375426-49375445 None:intergenic 25.0%
! TAGAATGGAAAAAATAAAGC+AGG - chr8_4:49375456-49375475 None:intergenic 25.0%
!! TGCATACTTTTGCATTTTAT+AGG + chr8_4:49375529-49375548 Msa1330220:intron 25.0%
! ATAGATGAATACTTCAGTAA+TGG + chr8_4:49375623-49375642 Msa1330220:CDS 25.0%
! TAGATGAATACTTCAGTAAT+GGG + chr8_4:49375624-49375643 Msa1330220:CDS 25.0%
!! CTTAAAGAATATGTTGATAG+TGG + chr8_4:49376115-49376134 Msa1330220:CDS 25.0%
! AAAAATATTGGGTTATACTC+AGG - chr8_4:49376586-49376605 None:intergenic 25.0%
!!! ATAACCCAATATTTTTGAAG+AGG + chr8_4:49376590-49376609 Msa1330220:CDS 25.0%
!! ATAGAAAGCAAATTTTTCCT+TGG - chr8_4:49377259-49377278 None:intergenic 25.0%
!! TATTTCATTTACAGCTTTTC+AGG + chr8_4:49377500-49377519 Msa1330220:three_prime_UTR 25.0%
! TCAAACTAAACTTGATCTAA+TGG - chr8_4:49377606-49377625 None:intergenic 25.0%
!!! TATTTTTAGATTCCTGGTTT+CGG + chr8_4:49377646-49377665 Msa1330220:three_prime_UTR 25.0%
AAGAATATCGAAACCCTAAA+CGG - chr8_4:49373222-49373241 None:intergenic 30.0%
! GATTTGCATTTTCATTTCAC+TGG + chr8_4:49373339-49373358 Msa1330220:five_prime_UTR 30.0%
!! GTGTTCGTTTTGAATTGAAA+CGG + chr8_4:49373560-49373579 Msa1330220:intron 30.0%
!! AAACGGTTATTGATTTCGTT+AGG + chr8_4:49373577-49373596 Msa1330220:intron 30.0%
! TAGTATTTTACTTAGGCTGT+TGG + chr8_4:49373987-49374006 Msa1330220:intron 30.0%
!! TAGAAGAAAGACTTTTGAGA+AGG + chr8_4:49374027-49374046 Msa1330220:intron 30.0%
AGATGAATAGGTGATAGATT+AGG + chr8_4:49374071-49374090 Msa1330220:intron 30.0%
! CTATCAGTTCTAATTGATTG+GGG - chr8_4:49374303-49374322 None:intergenic 30.0%
! CCTATCAGTTCTAATTGATT+GGG - chr8_4:49374304-49374323 None:intergenic 30.0%
! ACCTATCAGTTCTAATTGAT+TGG - chr8_4:49374305-49374324 None:intergenic 30.0%
CTAAAAAGTGGTATTGTATC+TGG - chr8_4:49374445-49374464 None:intergenic 30.0%
!!! CAGATACAATACCACTTTTT+AGG + chr8_4:49374443-49374462 Msa1330220:intron 30.0%
! TCTGTGAATGATTGCATTTT+CGG + chr8_4:49374499-49374518 Msa1330220:intron 30.0%
! AATGATTGCATTTTCGGTAT+AGG + chr8_4:49374505-49374524 Msa1330220:intron 30.0%
! TCTGTGAATGATTGCATTTT+TGG + chr8_4:49374499-49374518 Msa1330220:intron 30.0%
!!! ATGATTGCATTTTTGGTACA+TGG + chr8_4:49374608-49374627 Msa1330220:intron 30.0%
!!! TGATTGCATTTTTGGTACAT+GGG + chr8_4:49374609-49374628 Msa1330220:intron 30.0%
! TTTTGTCGTAGTTGCATTTT+CGG + chr8_4:49374634-49374653 Msa1330220:intron 30.0%
!! GATCAATAAGATTAGCTTCA+TGG - chr8_4:49374810-49374829 None:intergenic 30.0%
AGCTAATCTTATTGATCATG+AGG + chr8_4:49374813-49374832 Msa1330220:intron 30.0%
! GGATAATTTTCATAAACTGG+AGG + chr8_4:49374960-49374979 Msa1330220:intron 30.0%
CATGCGATAATAATCTACAT+TGG + chr8_4:49375090-49375109 Msa1330220:intron 30.0%
GTACAGAAGAGTTAACAATA+TGG - chr8_4:49375427-49375446 None:intergenic 30.0%
ACAACAAGAGAAAGATAGAA+TGG - chr8_4:49375471-49375490 None:intergenic 30.0%
! ACTGAAGTATTCATCTATGA+GGG - chr8_4:49375621-49375640 None:intergenic 30.0%
! TACTGAAGTATTCATCTATG+AGG - chr8_4:49375622-49375641 None:intergenic 30.0%
AGATGAATACTTCAGTAATG+GGG + chr8_4:49375625-49375644 Msa1330220:CDS 30.0%
TTTAACAGCTTCAACAGTAA+AGG - chr8_4:49376250-49376269 None:intergenic 30.0%
! TTTCCTTTTCTCTGTTCTTT+CGG - chr8_4:49376636-49376655 None:intergenic 30.0%
AAAGAACAGAGAAAAGGAAA+TGG + chr8_4:49376636-49376655 Msa1330220:CDS 30.0%
TATAGAGATATTCTCAACAG+AGG + chr8_4:49376684-49376703 Msa1330220:CDS 30.0%
TCAACAGAGGATATTGTTAA+TGG + chr8_4:49376697-49376716 Msa1330220:CDS 30.0%
AATTTCATCCAAGTTCAATG+GGG - chr8_4:49376830-49376849 None:intergenic 30.0%
CAATTTCATCCAAGTTCAAT+GGG - chr8_4:49376831-49376850 None:intergenic 30.0%
! GGAAAAATTTGCTTTCTATG+TGG + chr8_4:49377260-49377279 Msa1330220:CDS 30.0%
AAGTAAAAGAGCAAATGGAA+AGG - chr8_4:49377414-49377433 None:intergenic 30.0%
ATGTCAAGTAAAAGAGCAAA+TGG - chr8_4:49377419-49377438 None:intergenic 30.0%
! CTTTTAACATTTACTCTCTC+TGG + chr8_4:49377549-49377568 Msa1330220:three_prime_UTR 30.0%
!! AGACAGTGGATTTTCCAAAT+CGG - chr8_4:49373269-49373288 None:intergenic 35.0%
ATGAAAATGCAAATCGGAAC+TGG - chr8_4:49373334-49373353 None:intergenic 35.0%
! TGTTTGTGTTATTGGGGAAA+TGG + chr8_4:49373661-49373680 Msa1330220:exon 35.0%
!! ATTTTTGACTGAAGGACAGA+GGG + chr8_4:49373697-49373716 Msa1330220:CDS 35.0%
TGATTCTATATGCTATGCTG+TGG + chr8_4:49373939-49373958 Msa1330220:intron 35.0%
CCCAATCAATTAGAACTGAT+AGG + chr8_4:49374301-49374320 Msa1330220:intron 35.0%
CTAAAAAGTGGTATCGTATC+TGG - chr8_4:49374343-49374362 None:intergenic 35.0%
!!! CAGATACGATACCACTTTTT+AGG + chr8_4:49374341-49374360 Msa1330220:intron 35.0%
! TCTGTGAATGATCGCATTTT+CGG + chr8_4:49374397-49374416 Msa1330220:intron 35.0%
! AATGATCGCATTTTCGGTAT+AGG + chr8_4:49374403-49374422 Msa1330220:intron 35.0%
CTAAAAAGTGGTATCGTATC+TGG - chr8_4:49374343-49374362 None:intergenic 35.0%
!!! CAGATACGATACCACTTTTT+AGG + chr8_4:49374341-49374360 Msa1330220:intron 35.0%
! TAGTTGCATTTTCGGTACAT+GGG + chr8_4:49374642-49374661 Msa1330220:intron 35.0%
! GGAAGCAAAATCATTTTCGT+TGG - chr8_4:49374789-49374808 None:intergenic 35.0%
TTATTGATCATGAGGTACAG+AGG + chr8_4:49374821-49374840 Msa1330220:intron 35.0%
! TTTTCCTTTCTCCCAAATTC+AGG + chr8_4:49375013-49375032 Msa1330220:intron 35.0%
TTTCCTTTCTCCCAAATTCA+GGG + chr8_4:49375014-49375033 Msa1330220:intron 35.0%
CACATATTAGCCCTGAATTT+GGG - chr8_4:49375027-49375046 None:intergenic 35.0%
TCACATATTAGCCCTGAATT+TGG - chr8_4:49375028-49375047 None:intergenic 35.0%
AATCTACATTGGTCATCTTG+TGG + chr8_4:49375101-49375120 Msa1330220:intron 35.0%
GTTAACAATATGGGTCTGTT+TGG - chr8_4:49375417-49375436 None:intergenic 35.0%
GAAAAAATAAAGCAGGCAAC+AGG - chr8_4:49375449-49375468 None:intergenic 35.0%
CTTTCTTGAATTCATCCAAG+GGG - chr8_4:49375589-49375608 None:intergenic 35.0%
GCTTTCTTGAATTCATCCAA+GGG - chr8_4:49375590-49375609 None:intergenic 35.0%
TGCTTTCTTGAATTCATCCA+AGG - chr8_4:49375591-49375610 None:intergenic 35.0%
ACAAGTCGCTTAATGAAGTA+TGG - chr8_4:49375704-49375723 None:intergenic 35.0%
GCATGATAAGGAGAAAGAAA+TGG + chr8_4:49375742-49375761 Msa1330220:CDS 35.0%
TATCAAGAGCAAGATCATCT+AGG - chr8_4:49376342-49376361 None:intergenic 35.0%
TCACATTCTCATCTTCAACT+TGG - chr8_4:49376468-49376487 None:intergenic 35.0%
AAGTTGAAGATGAGAATGTG+AGG + chr8_4:49376467-49376486 Msa1330220:CDS 35.0%
! GAATGTGAGGAAGTACAAAA+AGG + chr8_4:49376480-49376499 Msa1330220:CDS 35.0%
GAGGTTAATAACACTTGCTT+TGG + chr8_4:49376609-49376628 Msa1330220:CDS 35.0%
!!! TAATGGTTTTGTCATGCTTC+TGG + chr8_4:49376714-49376733 Msa1330220:CDS 35.0%
CCAATTTCATCCAAGTTCAA+TGG - chr8_4:49376832-49376851 None:intergenic 35.0%
CCATTGAACTTGGATGAAAT+TGG + chr8_4:49376829-49376848 Msa1330220:CDS 35.0%
! AGTGAAGAAAGCTTTGGTTA+TGG + chr8_4:49377092-49377111 Msa1330220:CDS 35.0%
CAGATTATCCCATCTTCAAT+GGG - chr8_4:49377374-49377393 None:intergenic 35.0%
CATTGAAGATGGGATAATCT+GGG + chr8_4:49377373-49377392 Msa1330220:three_prime_UTR 35.0%
! TAATCTGGGATTGTTTGACA+TGG + chr8_4:49377387-49377406 Msa1330220:three_prime_UTR 35.0%
TCTTCTAGATCATTTCACTG+AGG + chr8_4:49377442-49377461 Msa1330220:three_prime_UTR 35.0%
TTTACAATGACCGAAGTAAC+AGG - chr8_4:49377470-49377489 None:intergenic 35.0%
CTTCGGTCATTGTAAAAAGT+TGG + chr8_4:49377474-49377493 Msa1330220:three_prime_UTR 35.0%
ATTTACTCTCTCTGGATGAA+GGG + chr8_4:49377557-49377576 Msa1330220:three_prime_UTR 35.0%
!!! GGCTACTATTTTTAGATTCC+TGG + chr8_4:49377640-49377659 Msa1330220:three_prime_UTR 35.0%
AAAGTGATGAATCGGTGGAA+AGG - chr8_4:49373152-49373171 None:intergenic 40.0%
TTGTGAAAGTGATGAATCGG+TGG - chr8_4:49373157-49373176 None:intergenic 40.0%
AATATCGAAACCCTAAACGG+TGG - chr8_4:49373219-49373238 None:intergenic 40.0%
ACGTGACGTGTTTGTGTTAT+TGG + chr8_4:49373653-49373672 Msa1330220:five_prime_UTR 40.0%
! CGTGACGTGTTTGTGTTATT+GGG + chr8_4:49373654-49373673 Msa1330220:five_prime_UTR 40.0%
! GTGACGTGTTTGTGTTATTG+GGG + chr8_4:49373655-49373674 Msa1330220:five_prime_UTR 40.0%
!! AACGAGGGATTTTTGACTGA+AGG + chr8_4:49373689-49373708 Msa1330220:CDS 40.0%
!! GATTTTTGACTGAAGGACAG+AGG + chr8_4:49373696-49373715 Msa1330220:CDS 40.0%
GGCTGTTGGATTTCTTGAAA+AGG + chr8_4:49374001-49374020 Msa1330220:intron 40.0%
! ATTTCGTCTTTTGCGGCTAA+TGG + chr8_4:49374157-49374176 Msa1330220:intron 40.0%
!!! GGCTAATGGCTTTTTTGCAA+TGG + chr8_4:49374171-49374190 Msa1330220:intron 40.0%
! TCAGTTCTAATTGATTGGGG+AGG - chr8_4:49374300-49374319 None:intergenic 40.0%
! GTAGTTGCATTTTCGGTACA+TGG + chr8_4:49374641-49374660 Msa1330220:intron 40.0%
! ACATGGGCATTTTGTCGTAT+TGG + chr8_4:49374658-49374677 Msa1330220:intron 40.0%
TTTCTTCCCATCATTCCCAA+GGG + chr8_4:49374695-49374714 Msa1330220:intron 40.0%
ATGAATGACTTTCCACCCTT+GGG - chr8_4:49374713-49374732 None:intergenic 40.0%
AATGAATGACTTTCCACCCT+TGG - chr8_4:49374714-49374733 None:intergenic 40.0%
GTGGACATCAATGCAAAACA+AGG + chr8_4:49374843-49374862 Msa1330220:intron 40.0%
!! TCCAAATTATGATAGTGGCG+AGG + chr8_4:49375203-49375222 Msa1330220:CDS 40.0%
ACCTCGCCACTATCATAATT+TGG - chr8_4:49375207-49375226 None:intergenic 40.0%
TATGGGTCTGTTTGGAAGAT+TGG - chr8_4:49375409-49375428 None:intergenic 40.0%
TTTATAGGAACCCTATGAGC+TGG + chr8_4:49375544-49375563 Msa1330220:intron 40.0%
GGATGAATTCAAGAAAGCAG+TGG + chr8_4:49375592-49375611 Msa1330220:CDS 40.0%
! CAGTAATGGGGATGTTGATT+TGG + chr8_4:49375637-49375656 Msa1330220:CDS 40.0%
! CATTAAGCGACTTGTTTCCA+TGG + chr8_4:49375709-49375728 Msa1330220:CDS 40.0%
TCATTAGTCCCACACAGATT+AGG + chr8_4:49375798-49375817 Msa1330220:CDS 40.0%
CATTAGTCCCACACAGATTA+GGG + chr8_4:49375799-49375818 Msa1330220:CDS 40.0%
AATCCATCCCTAATCTGTGT+GGG - chr8_4:49375809-49375828 None:intergenic 40.0%
AAATCCATCCCTAATCTGTG+TGG - chr8_4:49375810-49375829 None:intergenic 40.0%
! TGACATCCTTGCTTTATTCC+TGG + chr8_4:49375883-49375902 Msa1330220:CDS 40.0%
AGAACTTGTGGAAAGACGAT+GGG + chr8_4:49376039-49376058 Msa1330220:CDS 40.0%
TGTAGGTGTATACGTGAGTT+GGG + chr8_4:49376154-49376173 Msa1330220:CDS 40.0%
AACAGTAAAGGTTCTGCTGA+AGG - chr8_4:49376238-49376257 None:intergenic 40.0%
TTAAAAGAAGCAGCAGCAGA+AGG + chr8_4:49376265-49376284 Msa1330220:CDS 40.0%
! ACTGATTAGTTCCAGCCAAA+TGG + chr8_4:49376288-49376307 Msa1330220:CDS 40.0%
GAGAAAACCCTTTCACCATT+TGG - chr8_4:49376306-49376325 None:intergenic 40.0%
! AGAAACAAGGCTTTAGCTGA+TGG - chr8_4:49376367-49376386 None:intergenic 40.0%
ATCCTTCAGATATTGCCTTG+GGG - chr8_4:49376399-49376418 None:intergenic 40.0%
CATCCTTCAGATATTGCCTT+GGG - chr8_4:49376400-49376419 None:intergenic 40.0%
ATTCGAAGCCTAGAAGATCT+TGG + chr8_4:49376556-49376575 Msa1330220:CDS 40.0%
CTATATGAAGTGCAGATAGC+AGG - chr8_4:49376669-49376688 None:intergenic 40.0%
AAATGCTGAAGATACAACGC+TGG + chr8_4:49376738-49376757 Msa1330220:CDS 40.0%
AGATACAACGCTGGATATAC+TGG + chr8_4:49376747-49376766 Msa1330220:CDS 40.0%
!!! AGCTTGCTCTGTTTTTAGCT+CGG + chr8_4:49376782-49376801 Msa1330220:CDS 40.0%
! GTTTCACTACCACTGCATTT+TGG - chr8_4:49376868-49376887 None:intergenic 40.0%
TGAAAGGCTATTGAGATGCT+GGG + chr8_4:49376930-49376949 Msa1330220:CDS 40.0%
! TCTTGGAGGAGTATGAAAGT+GGG + chr8_4:49377004-49377023 Msa1330220:CDS 40.0%
ACTACCTCATGGTTGAAGAA+AGG - chr8_4:49377075-49377094 None:intergenic 40.0%
AAGCTTTCTTCACTACCTCA+TGG - chr8_4:49377086-49377105 None:intergenic 40.0%
TGAGGTAGTGAAGAAAGCTT+TGG + chr8_4:49377086-49377105 Msa1330220:CDS 40.0%
CCTATCATTCTTCTTCTCCA+TGG - chr8_4:49377118-49377137 None:intergenic 40.0%
CCATGGAGAAGAAGAATGAT+AGG + chr8_4:49377115-49377134 Msa1330220:CDS 40.0%
GAAGAAGAATGATAGGATGC+TGG + chr8_4:49377122-49377141 Msa1330220:CDS 40.0%
GAATCCTTTAGTCAGCTGAT+TGG - chr8_4:49377187-49377206 None:intergenic 40.0%
TAAAGGATTCACCCGGATTA+AGG + chr8_4:49377197-49377216 Msa1330220:CDS 40.0%
! GCAAATTTTTCCTTGGCGTT+TGG - chr8_4:49377252-49377271 None:intergenic 40.0%
!! GTAGTTTTGCTAGACATCTG+GGG - chr8_4:49377334-49377353 None:intergenic 40.0%
!! GGTAGTTTTGCTAGACATCT+GGG - chr8_4:49377335-49377354 None:intergenic 40.0%
ATGTCTAGCAAAACTACCCA+GGG + chr8_4:49377337-49377356 Msa1330220:exon 40.0%
ATTATCCCATCTTCAATGGG+AGG - chr8_4:49377371-49377390 None:intergenic 40.0%
CCAGATTATCCCATCTTCAA+TGG - chr8_4:49377375-49377394 None:intergenic 40.0%
CCATTGAAGATGGGATAATC+TGG + chr8_4:49377372-49377391 Msa1330220:three_prime_UTR 40.0%
CAGGATAATGTTGCATCAAG+AGG + chr8_4:49377519-49377538 Msa1330220:three_prime_UTR 40.0%
CATTTACTCTCTCTGGATGA+AGG + chr8_4:49377556-49377575 Msa1330220:three_prime_UTR 40.0%
CACATTAAGCATGCATAGGT+GGG - chr8_4:49377701-49377720 None:intergenic 40.0%
TCACATTAAGCATGCATAGG+TGG - chr8_4:49377702-49377721 None:intergenic 40.0%
CCATCACATTAAGCATGCAT+AGG - chr8_4:49377705-49377724 None:intergenic 40.0%
CCTATGCATGCTTAATGTGA+TGG + chr8_4:49377702-49377721 Msa1330220:three_prime_UTR 40.0%
AAACGGTGGTGTGAGAGAAA+CGG - chr8_4:49373205-49373224 None:intergenic 45.0%
TTTCTCTCACACCACCGTTT+AGG + chr8_4:49373205-49373224 Msa1330220:five_prime_UTR 45.0%
TTCTCTCACACCACCGTTTA+GGG + chr8_4:49373206-49373225 Msa1330220:five_prime_UTR 45.0%
CGTTGTTGCAGTTTCCGATT+TGG + chr8_4:49373252-49373271 Msa1330220:five_prime_UTR 45.0%
GAACTGGAATCTTCTGTGCT+TGG - chr8_4:49373318-49373337 None:intergenic 45.0%
TGATCAGCAAGCAATGTCGA+CGG - chr8_4:49373779-49373798 None:intergenic 45.0%
! GGTCGCATTCTGGAAAGTTA+GGG + chr8_4:49373867-49373886 Msa1330220:CDS 45.0%
AGGGTGAGTTGTGTGTTCTT+TGG + chr8_4:49373900-49373919 Msa1330220:intron 45.0%
CTTTCTTCCCATCATTCCCA+AGG + chr8_4:49374694-49374713 Msa1330220:intron 45.0%
TTTCCACCCTTGGGAATGAT+GGG - chr8_4:49374704-49374723 None:intergenic 45.0%
TTGATCATGAGGTACAGAGG+TGG + chr8_4:49374824-49374843 Msa1330220:intron 45.0%
TAGCCCTGAATTTGGGAGAA+AGG - chr8_4:49375020-49375039 None:intergenic 45.0%
GTCTGTTTGGAAGATTGGAG+GGG - chr8_4:49375404-49375423 None:intergenic 45.0%
GGTCTGTTTGGAAGATTGGA+GGG - chr8_4:49375405-49375424 None:intergenic 45.0%
GTAGTTCCAACCAGCTCATA+GGG - chr8_4:49375557-49375576 None:intergenic 45.0%
AGTAGTTCCAACCAGCTCAT+AGG - chr8_4:49375558-49375577 None:intergenic 45.0%
AACTACTGTTACTGACCCCT+TGG + chr8_4:49375571-49375590 Msa1330220:CDS 45.0%
GCATCTGACCTAAGAGAACT+TGG + chr8_4:49375662-49375681 Msa1330220:CDS 45.0%
CACTTGAGCCAAGTTCTCTT+AGG - chr8_4:49375673-49375692 None:intergenic 45.0%
TTGTTTCCATGGCAATGGAC+AGG + chr8_4:49375720-49375739 Msa1330220:CDS 45.0%
ATCTGCTGATGATCTTGCAG+TGG + chr8_4:49375844-49375863 Msa1330220:CDS 45.0%
TGATCTTGCAGTGGATATCC+TGG + chr8_4:49375853-49375872 Msa1330220:CDS 45.0%
AGCTGAGAGATAGCTCTTCT+CGG - chr8_4:49376008-49376027 None:intergenic 45.0%
GTCTTTCCACAAGTTCTGCA+TGG - chr8_4:49376036-49376055 None:intergenic 45.0%
CAGAACTTGTGGAAAGACGA+TGG + chr8_4:49376038-49376057 Msa1330220:CDS 45.0%
GAACTTGTGGAAAGACGATG+GGG + chr8_4:49376040-49376059 Msa1330220:CDS 45.0%
CAACTCACGTATACACCTAC+AGG - chr8_4:49376155-49376174 None:intergenic 45.0%
CTGTAGGTGTATACGTGAGT+TGG + chr8_4:49376153-49376172 Msa1330220:CDS 45.0%
AGTTGCATTCTTCCATCACG+AGG + chr8_4:49376177-49376196 Msa1330220:CDS 45.0%
AATCTCCATGGCAAGTACCA+GGG - chr8_4:49376215-49376234 None:intergenic 45.0%
TTCTGCTGAAGGAATCTCCA+TGG - chr8_4:49376227-49376246 None:intergenic 45.0%
AGTTCCAGCCAAATGGTGAA+AGG + chr8_4:49376295-49376314 Msa1330220:CDS 45.0%
GTTCCAGCCAAATGGTGAAA+GGG + chr8_4:49376296-49376315 Msa1330220:CDS 45.0%
AAACCCTTTCACCATTTGGC+TGG - chr8_4:49376302-49376321 None:intergenic 45.0%
! GGTGAAAGGGTTTTCTCGAT+TGG + chr8_4:49376309-49376328 Msa1330220:CDS 45.0%
! GGGTTTTCTCGATTGGAAGA+AGG + chr8_4:49376316-49376335 Msa1330220:CDS 45.0%
GGGGACAAATGACAGAAACA+AGG - chr8_4:49376380-49376399 None:intergenic 45.0%
! GTTTCTGTCATTTGTCCCCA+AGG + chr8_4:49376381-49376400 Msa1330220:CDS 45.0%
CCATCCTTCAGATATTGCCT+TGG - chr8_4:49376401-49376420 None:intergenic 45.0%
CCAAGGCAATATCTGAAGGA+TGG + chr8_4:49376398-49376417 Msa1330220:CDS 45.0%
CCAATCCAGCTGGTGAAAAT+GGG + chr8_4:49376437-49376456 Msa1330220:CDS 45.0%
CAATCCAGCTGGTGAAAATG+GGG + chr8_4:49376438-49376457 Msa1330220:CDS 45.0%
! AATTCCCCATTTTCACCAGC+TGG - chr8_4:49376445-49376464 None:intergenic 45.0%
TCTAGGCTTCGAATGAGTTC+AGG - chr8_4:49376550-49376569 None:intergenic 45.0%
GGACCGAAAGAACAGAGAAA+AGG + chr8_4:49376630-49376649 Msa1330220:CDS 45.0%
!!! GCTTGCTCTGTTTTTAGCTC+GGG + chr8_4:49376783-49376802 Msa1330220:CDS 45.0%
TGTACTTGCCCCATTGAACT+TGG + chr8_4:49376819-49376838 Msa1330220:CDS 45.0%
AGACTACCACCAAAATGCAG+TGG + chr8_4:49376856-49376875 Msa1330220:CDS 45.0%
! TCACTACCACTGCATTTTGG+TGG - chr8_4:49376865-49376884 None:intergenic 45.0%
! TGGTAGTGAAACTGTGCGTA+TGG + chr8_4:49376876-49376895 Msa1330220:CDS 45.0%
GTGAAAGGCTATTGAGATGC+TGG + chr8_4:49376929-49376948 Msa1330220:CDS 45.0%
GAAAGGCTATTGAGATGCTG+GGG + chr8_4:49376931-49376950 Msa1330220:CDS 45.0%
GGACAAGATCACAAAGCTCT+TGG + chr8_4:49376987-49377006 Msa1330220:CDS 45.0%
CAAGATCACAAAGCTCTTGG+AGG + chr8_4:49376990-49377009 Msa1330220:CDS 45.0%
! CTCTTGGAGGAGTATGAAAG+TGG + chr8_4:49377003-49377022 Msa1330220:CDS 45.0%
! CTTGGAGGAGTATGAAAGTG+GGG + chr8_4:49377005-49377024 Msa1330220:CDS 45.0%
! TTGGAGGAGTATGAAAGTGG+GGG + chr8_4:49377006-49377025 Msa1330220:CDS 45.0%
ATGCCAGTGTATTCGTGACT+TGG + chr8_4:49377044-49377063 Msa1330220:CDS 45.0%
TGCCAGTGTATTCGTGACTT+GGG + chr8_4:49377045-49377064 Msa1330220:CDS 45.0%
GATGCCTTTCTTCAACCATG+AGG + chr8_4:49377068-49377087 Msa1330220:CDS 45.0%
! GAAAGCTTTGGTTATGGCCA+TGG + chr8_4:49377098-49377117 Msa1330220:CDS 45.0%
ACCACCAATCAGCTGACTAA+AGG + chr8_4:49377180-49377199 Msa1330220:CDS 45.0%
TCCTTTAGTCAGCTGATTGG+TGG - chr8_4:49377184-49377203 None:intergenic 45.0%
AGCTGACTAAAGGATTCACC+CGG + chr8_4:49377190-49377209 Msa1330220:CDS 45.0%
ATCAAGACCCTCCTTAATCC+GGG - chr8_4:49377211-49377230 None:intergenic 45.0%
CATCAAGACCCTCCTTAATC+CGG - chr8_4:49377212-49377231 None:intergenic 45.0%
! TAAGGAGGGTCTTGATGATC+TGG + chr8_4:49377215-49377234 Msa1330220:CDS 45.0%
!! GGGTAGTTTTGCTAGACATC+TGG - chr8_4:49377336-49377355 None:intergenic 45.0%
GATGTCTAGCAAAACTACCC+AGG + chr8_4:49377336-49377355 Msa1330220:exon 45.0%
TGTTGTCCTCCCATTGAAGA+TGG + chr8_4:49377362-49377381 Msa1330220:three_prime_UTR 45.0%
GTTGTCCTCCCATTGAAGAT+GGG + chr8_4:49377363-49377382 Msa1330220:three_prime_UTR 45.0%
! CACTGAGGTTCCTGTTACTT+CGG + chr8_4:49377457-49377476 Msa1330220:three_prime_UTR 45.0%
GAAAATTGGAGACCGAAACC+AGG - chr8_4:49377661-49377680 None:intergenic 45.0%
!!! ATTTTAAATATTTTGAAAAT+TGG - chr8_4:49377675-49377694 None:intergenic 5.0%
TCCACTGTCTTCTCCTGTCT+TGG + chr8_4:49373279-49373298 Msa1330220:five_prime_UTR 50.0%
CATCACATCAAAGCTCCTGC+TGG + chr8_4:49373800-49373819 Msa1330220:CDS 50.0%
! CGGTCGCATTCTGGAAAGTT+AGG + chr8_4:49373866-49373885 Msa1330220:CDS 50.0%
! CGCATTCTGGAAAGTTAGGG+CGG + chr8_4:49373870-49373889 Msa1330220:CDS 50.0%
! GCATTCTGGAAAGTTAGGGC+GGG + chr8_4:49373871-49373890 Msa1330220:CDS 50.0%
!! AAAGTTAGGGCGGGCTAAGA+AGG + chr8_4:49373880-49373899 Msa1330220:CDS 50.0%
!! AAGTTAGGGCGGGCTAAGAA+GGG + chr8_4:49373881-49373900 Msa1330220:CDS 50.0%
CTTTCCACCCTTGGGAATGA+TGG - chr8_4:49374705-49374724 None:intergenic 50.0%
GGTCATCTTGTGGATGCAGA+TGG + chr8_4:49375111-49375130 Msa1330220:intron 50.0%
TTTGGAAGATTGGAGGGGAG+GGG - chr8_4:49375399-49375418 None:intergenic 50.0%
GTTTGGAAGATTGGAGGGGA+GGG - chr8_4:49375400-49375419 None:intergenic 50.0%
TGTTTGGAAGATTGGAGGGG+AGG - chr8_4:49375401-49375420 None:intergenic 50.0%
GGGTCTGTTTGGAAGATTGG+AGG - chr8_4:49375406-49375425 None:intergenic 50.0%
TAGGAACCCTATGAGCTGGT+TGG + chr8_4:49375548-49375567 Msa1330220:intron 50.0%
! GCGACTTGTTTCCATGGCAA+TGG + chr8_4:49375715-49375734 Msa1330220:CDS 50.0%
ATCATGCCTGTCCATTGCCA+TGG - chr8_4:49375729-49375748 None:intergenic 50.0%
GGCAATGGACAGGCATGATA+AGG + chr8_4:49375730-49375749 Msa1330220:CDS 50.0%
AGTCCCACACAGATTAGGGA+TGG + chr8_4:49375803-49375822 Msa1330220:CDS 50.0%
CAAGGATGTCAACTGCATCC+AGG - chr8_4:49375874-49375893 None:intergenic 50.0%
CACGTGCCAGGAATAAAGCA+AGG - chr8_4:49375892-49375911 None:intergenic 50.0%
GCTCTTCCGGAATCTTCCAA+GGG + chr8_4:49375962-49375981 Msa1330220:CDS 50.0%
TCAGCTCCCTTGGAAGATTC+CGG - chr8_4:49375971-49375990 None:intergenic 50.0%
TCCACACCATGCAGAACTTG+TGG + chr8_4:49376027-49376046 Msa1330220:CDS 50.0%
TCCACAAGTTCTGCATGGTG+TGG - chr8_4:49376031-49376050 None:intergenic 50.0%
CCTTCTTCACAACCTCGTGA+TGG - chr8_4:49376192-49376211 None:intergenic 50.0%
CCATCACGAGGTTGTGAAGA+AGG + chr8_4:49376189-49376208 Msa1330220:CDS 50.0%
GAATCTCCATGGCAAGTACC+AGG - chr8_4:49376216-49376235 None:intergenic 50.0%
GTCCCCAAGGCAATATCTGA+AGG + chr8_4:49376394-49376413 Msa1330220:CDS 50.0%
!! TTCACCAGCTGGATTGGCAA+AGG - chr8_4:49376434-49376453 None:intergenic 50.0%
GCCAATCCAGCTGGTGAAAA+TGG + chr8_4:49376436-49376455 Msa1330220:CDS 50.0%
! CCCATTTTCACCAGCTGGAT+TGG - chr8_4:49376440-49376459 None:intergenic 50.0%
CAGGTGCTCCAAGATCTTCT+AGG - chr8_4:49376567-49376586 None:intergenic 50.0%
! TGGAGGAGTATGAAAGTGGG+GGG + chr8_4:49377007-49377026 Msa1330220:CDS 50.0%
TATGAAAGTGGGGGGGTTGT+CGG + chr8_4:49377015-49377034 Msa1330220:CDS 50.0%
GCCAGTGTATTCGTGACTTG+GGG + chr8_4:49377046-49377065 Msa1330220:CDS 50.0%
TCCCCAAGTCACGAATACAC+TGG - chr8_4:49377050-49377069 None:intergenic 50.0%
!! TAGGATGCTGGATTTGCTGC+AGG + chr8_4:49377134-49377153 Msa1330220:CDS 50.0%
!! TCAGCTGATTGGTGGTGATG+AGG - chr8_4:49377176-49377195 None:intergenic 50.0%
AGGATTCACCCGGATTAAGG+AGG + chr8_4:49377200-49377219 Msa1330220:CDS 50.0%
GGATTCACCCGGATTAAGGA+GGG + chr8_4:49377201-49377220 Msa1330220:CDS 50.0%
TCTGGACATTCCAAACGCCA+AGG + chr8_4:49377239-49377258 Msa1330220:CDS 50.0%
GGGGCAGAGGAATCAAATGA+TGG - chr8_4:49377315-49377334 None:intergenic 50.0%
TCTCTGGATGAAGGGTCTGT+TGG + chr8_4:49377565-49377584 Msa1330220:three_prime_UTR 50.0%
GCCAAGACAGGAGAAGACAG+TGG - chr8_4:49373283-49373302 None:intergenic 55.0%
! TCCTGTCTTGGCTCGAGATC+CGG + chr8_4:49373291-49373310 Msa1330220:five_prime_UTR 55.0%
GGAATCTTCTGTGCTTGGCC+CGG - chr8_4:49373313-49373332 None:intergenic 55.0%
AGCAATGTCGACGGCGACTT+AGG - chr8_4:49373770-49373789 None:intergenic 55.0%
CACATCAAAGCTCCTGCTGG+TGG + chr8_4:49373803-49373822 Msa1330220:CDS 55.0%
CAAAGCTCCTGCTGGTGGTA+AGG + chr8_4:49373808-49373827 Msa1330220:CDS 55.0%
GTGGTAAGGCACAGACTGCT+GGG + chr8_4:49373822-49373841 Msa1330220:CDS 55.0%
AGACTGCTGGGATTGCTGTG+AGG + chr8_4:49373834-49373853 Msa1330220:CDS 55.0%
TTGCTGTGAGGCATGTGCGT+CGG + chr8_4:49373846-49373865 Msa1330220:CDS 55.0%
CTTCCCATCATTCCCAAGGG+TGG + chr8_4:49374698-49374717 Msa1330220:intron 55.0%
CTTGTGGATGCAGATGGTGC+TGG + chr8_4:49375117-49375136 Msa1330220:intron 55.0%
!! TGCAGATGGTGCTGGTGGTA+AGG + chr8_4:49375125-49375144 Msa1330220:intron 55.0%
!! GCAGATGGTGCTGGTGGTAA+GGG + chr8_4:49375126-49375145 Msa1330220:intron 55.0%
!! TGCTGGTGGTAAGGGCACTT+GGG + chr8_4:49375134-49375153 Msa1330220:CDS 55.0%
TTGGAGGGGAGGGGATTAGA+GGG - chr8_4:49375375-49375394 None:intergenic 55.0%
ATTGGAGGGGAGGGGATTAG+AGG - chr8_4:49375376-49375395 None:intergenic 55.0%
AAGATTGGAGGGGAGGGGAT+TGG - chr8_4:49375394-49375413 None:intergenic 55.0%
CATCAACAACAGCACGTGCC+AGG - chr8_4:49375904-49375923 None:intergenic 55.0%
TTCCACCAGCCTTTCTTGCC+AGG + chr8_4:49375930-49375949 Msa1330220:CDS 55.0%
TCCACCAGCCTTTCTTGCCA+GGG + chr8_4:49375931-49375950 Msa1330220:CDS 55.0%
CTTCCTTGCCCTGGCAAGAA+AGG - chr8_4:49375942-49375961 None:intergenic 55.0%
CTTTCTTGCCAGGGCAAGGA+AGG + chr8_4:49375940-49375959 Msa1330220:CDS 55.0%
GGCTCTTCCGGAATCTTCCA+AGG + chr8_4:49375961-49375980 Msa1330220:CDS 55.0%
GGAATCTTCCAAGGGAGCTG+AGG + chr8_4:49375970-49375989 Msa1330220:CDS 55.0%
CTTGACTACCTCAGCTCCCT+TGG - chr8_4:49375981-49376000 None:intergenic 55.0%
CTTGTGGAAAGACGATGGGG+TGG + chr8_4:49376043-49376062 Msa1330220:CDS 55.0%
GCGAGACACTTGAAGCCTGT+AGG + chr8_4:49376137-49376156 Msa1330220:CDS 55.0%
GCTTCCTTTGCCAATCCAGC+TGG + chr8_4:49376427-49376446 Msa1330220:CDS 55.0%
CTCTCTTCTGCTCGTCATGC+AGG + chr8_4:49376907-49376926 Msa1330220:CDS 55.0%
CTGCTCGTCATGCAGGTGAA+AGG + chr8_4:49376914-49376933 Msa1330220:CDS 55.0%
AGGCTATTGAGATGCTGGGG+CGG + chr8_4:49376934-49376953 Msa1330220:CDS 55.0%
! ATGGGCTGTGGAGGATGCTA+AGG + chr8_4:49376966-49376985 Msa1330220:CDS 55.0%
! GGAGGAGTATGAAAGTGGGG+GGG + chr8_4:49377008-49377027 Msa1330220:CDS 55.0%
!! CTGCAGGAGTGCTTCAGTGA+AGG + chr8_4:49377150-49377169 Msa1330220:CDS 55.0%
! GGGTCTTGATGATCTGGCTC+TGG + chr8_4:49377221-49377240 Msa1330220:CDS 55.0%
TGTGGAGCATGCACAGACCA+AGG + chr8_4:49377278-49377297 Msa1330220:CDS 55.0%
GTGGAGCATGCACAGACCAA+GGG + chr8_4:49377279-49377298 Msa1330220:CDS 55.0%
TGGAGCATGCACAGACCAAG+GGG + chr8_4:49377280-49377299 Msa1330220:CDS 55.0%
TGATGGTAGAAGCCACCCCT+TGG - chr8_4:49377298-49377317 None:intergenic 55.0%
! TTGCTAGACATCTGGGGCAG+AGG - chr8_4:49377328-49377347 None:intergenic 55.0%
ATGGGAGGACAACATGCCCT+GGG - chr8_4:49377356-49377375 None:intergenic 55.0%
AATGGGAGGACAACATGCCC+TGG - chr8_4:49377357-49377376 None:intergenic 55.0%
! CCTGTCTTGGCTCGAGATCC+GGG + chr8_4:49373292-49373311 Msa1330220:five_prime_UTR 60.0%
! TGGGGAAATGGCGTCGAACG+AGG + chr8_4:49373673-49373692 Msa1330220:exon 60.0%
! GGGGAAATGGCGTCGAACGA+GGG + chr8_4:49373674-49373693 Msa1330220:exon 60.0%
GTCTGTGCCTTACCACCAGC+AGG - chr8_4:49373818-49373837 None:intergenic 60.0%
GGTGGTAAGGCACAGACTGC+TGG + chr8_4:49373821-49373840 Msa1330220:CDS 60.0%
! CATGTGCGTCGGTCGCATTC+TGG + chr8_4:49373857-49373876 Msa1330220:CDS 60.0%
! GTGGATGCAGATGGTGCTGG+TGG + chr8_4:49375120-49375139 Msa1330220:intron 60.0%
!! GTGCTGGTGGTAAGGGCACT+TGG + chr8_4:49375133-49375152 Msa1330220:CDS 60.0%
!! GCTGGTGGTAAGGGCACTTG+GGG + chr8_4:49375135-49375154 Msa1330220:CDS 60.0%
!! CTGGTGGTAAGGGCACTTGG+GGG + chr8_4:49375136-49375155 Msa1330220:CDS 60.0%
GGGCACTTGGGGGAAATTGC+TGG + chr8_4:49375146-49375165 Msa1330220:CDS 60.0%
TTGGAGGGGAGGGGATTGGA+GGG - chr8_4:49375390-49375409 None:intergenic 60.0%
ATTGGAGGGGAGGGGATTGG+AGG - chr8_4:49375391-49375410 None:intergenic 60.0%
CTTGCCCTGGCAAGAAAGGC+TGG - chr8_4:49375938-49375957 None:intergenic 60.0%
CAGCCTTTCTTGCCAGGGCA+AGG + chr8_4:49375936-49375955 Msa1330220:CDS 60.0%
CAGGGCAAGGAAGGCTCTTC+CGG + chr8_4:49375949-49375968 Msa1330220:CDS 60.0%
CGAGGTTGTGAAGAAGGCCC+TGG + chr8_4:49376195-49376214 Msa1330220:CDS 60.0%
GAAGGCCCTGGTACTTGCCA+TGG + chr8_4:49376207-49376226 Msa1330220:CDS 60.0%
GGCTATTGAGATGCTGGGGC+GGG + chr8_4:49376935-49376954 Msa1330220:CDS 60.0%
GCTATTGAGATGCTGGGGCG+GGG + chr8_4:49376936-49376955 Msa1330220:CDS 60.0%
CTATTGAGATGCTGGGGCGG+GGG + chr8_4:49376937-49376956 Msa1330220:CDS 60.0%
AGCATGCACAGACCAAGGGG+TGG + chr8_4:49377283-49377302 Msa1330220:CDS 60.0%
CCCGGATCTCGAGCCAAGAC+AGG - chr8_4:49373295-49373314 None:intergenic 65.0%
TGGAGGGGAGGGGATTGGAG+GGG - chr8_4:49375389-49375408 None:intergenic 65.0%
GCCCTGGCAAGAAAGGCTGG+TGG - chr8_4:49375935-49375954 None:intergenic 65.0%
CGGAAGAGCCTTCCTTGCCC+TGG - chr8_4:49375951-49375970 None:intergenic 65.0%
!! GGGAACTGGATGGGCTGTGG+AGG + chr8_4:49376957-49376976 Msa1330220:CDS 65.0%
GGGAGGGGATTGGAGGGGAG+GGG - chr8_4:49375384-49375403 None:intergenic 70.0%
GGGGAGGGGATTGGAGGGGA+GGG - chr8_4:49375385-49375404 None:intergenic 70.0%
AGGGGAGGGGATTGGAGGGG+AGG - chr8_4:49375386-49375405 None:intergenic 70.0%
AGATGCTGGGGCGGGGGAAC+TGG + chr8_4:49376943-49376962 Msa1330220:CDS 70.0%
CTGGGGCGGGGGAACTGGAT+GGG + chr8_4:49376948-49376967 Msa1330220:CDS 70.0%
!! CGGGGGAACTGGATGGGCTG+TGG + chr8_4:49376954-49376973 Msa1330220:CDS 70.0%
GCTGGGGCGGGGGAACTGGA+TGG + chr8_4:49376947-49376966 Msa1330220:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 49373143 49377741 49373143 ID=Msa1330220;Name=Msa1330220
chr8_4 mRNA 49373143 49377741 49373143 ID=Msa1330220-mRNA-1;Parent=Msa1330220;Name=Msa1330220-mRNA-1;_AED=0.00;_eAED=0.00;_QI=249|1|1|1|0.66|0.5|4|397|703
chr8_4 exon 49373143 49373360 49373143 ID=Msa1330220-mRNA-1:exon:14223;Parent=Msa1330220-mRNA-1
chr8_4 exon 49373649 49373902 49373649 ID=Msa1330220-mRNA-1:exon:14224;Parent=Msa1330220-mRNA-1
chr8_4 exon 49375130 49375224 49375130 ID=Msa1330220-mRNA-1:exon:14225;Parent=Msa1330220-mRNA-1
chr8_4 exon 49375551 49377741 49375551 ID=Msa1330220-mRNA-1:exon:14226;Parent=Msa1330220-mRNA-1
chr8_4 five_prime_UTR 49373143 49373360 49373143 ID=Msa1330220-mRNA-1:five_prime_utr;Parent=Msa1330220-mRNA-1
chr8_4 five_prime_UTR 49373649 49373679 49373649 ID=Msa1330220-mRNA-1:five_prime_utr;Parent=Msa1330220-mRNA-1
chr8_4 CDS 49373680 49373902 49373680 ID=Msa1330220-mRNA-1:cds;Parent=Msa1330220-mRNA-1
chr8_4 CDS 49375130 49375224 49375130 ID=Msa1330220-mRNA-1:cds;Parent=Msa1330220-mRNA-1
chr8_4 CDS 49375551 49377344 49375551 ID=Msa1330220-mRNA-1:cds;Parent=Msa1330220-mRNA-1
chr8_4 three_prime_UTR 49377345 49377741 49377345 ID=Msa1330220-mRNA-1:three_prime_utr;Parent=Msa1330220-mRNA-1
Gene Sequence

>Msa1330220

ATGGCGTCGAACGAGGGATTTTTGACTGAAGGACAGAGGGAGATGTTGAAAATTGCGAGTCAGAACGCTGAGAATTTGTCGTCGTCGCCTAAGTCGCCGTCGACATTGCTTGCTGATCATCATCACATCAAAGCTCCTGCTGGTGGTAAGGCACAGACTGCTGGGATTGCTGTGAGGCATGTGCGTCGGTCGCATTCTGGAAAGTTAGGGCGGGCTAAGAAGGATGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTGGACACAGAAATTGATTCTCACATAGACCGCAATGATCCAAATTATGATAGTGGCGAGGAACCCTATGAGCTGGTTGGAACTACTGTTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCCTCATAGATGAATACTTCAGTAATGGGGATGTTGATTTGGCAGCATCTGACCTAAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAGCGACTTGTTTCCATGGCAATGGACAGGCATGATAAGGAGAAAGAAATGGCTTCTGTTCTGCTTTCAGCACTGTATGCTGATGTCATTAGTCCCACACAGATTAGGGATGGATTTTTTATGCTTATTGAATCTGCTGATGATCTTGCAGTGGATATCCTGGATGCAGTTGACATCCTTGCTTTATTCCTGGCACGTGCTGTTGTTGATGATATTCTTCCACCAGCCTTTCTTGCCAGGGCAAGGAAGGCTCTTCCGGAATCTTCCAAGGGAGCTGAGGTAGTCAAGACTGCCGAGAAGAGCTATCTCTCAGCTCCACACCATGCAGAACTTGTGGAAAGACGATGGGGTGGTAGCACTCACATTACTGTTGAAGAAATGAAGAAAAAGATTGCTGATTTACTTAAAGAATATGTTGATAGTGGCGAGACACTTGAAGCCTGTAGGTGTATACGTGAGTTGGGAGTTGCATTCTTCCATCACGAGGTTGTGAAGAAGGCCCTGGTACTTGCCATGGAGATTCCTTCAGCAGAACCTTTACTGTTGAAGCTGTTAAAAGAAGCAGCAGCAGAAGGACTGATTAGTTCCAGCCAAATGGTGAAAGGGTTTTCTCGATTGGAAGAAGGCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAAGCCTTGTTTCTGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCCTTTGCCAATCCAGCTGGTGAAAATGGGGAATTCCAAGTTGAAGATGAGAATGTGAGGAAGTACAAAAAGGAAGCTGTAACTATAATTCATGAGTATTTTCTCTCTGACGACATTCCTGAACTCATTCGAAGCCTAGAAGATCTTGGAGCACCTGAGTATAACCCAATATTTTTGAAGAGGTTAATAACACTTGCTTTGGACCGAAAGAACAGAGAAAAGGAAATGGCATCTGTCCTGCTATCTGCACTTCATATAGAGATATTCTCAACAGAGGATATTGTTAATGGTTTTGTCATGCTTCTGGAAAATGCTGAAGATACAACGCTGGATATACTGGATGCTTCGAATGAGCTTGCTCTGTTTTTAGCTCGGGCTGTGATTGATGATGTACTTGCCCCATTGAACTTGGATGAAATTGGCAGCAGACTACCACCAAAATGCAGTGGTAGTGAAACTGTGCGTATGGCTCGAACACTCTCTTCTGCTCGTCATGCAGGTGAAAGGCTATTGAGATGCTGGGGCGGGGGAACTGGATGGGCTGTGGAGGATGCTAAGGACAAGATCACAAAGCTCTTGGAGGAGTATGAAAGTGGGGGGGTTGTCGGTGAAGCATGCCAGTGTATTCGTGACTTGGGGATGCCTTTCTTCAACCATGAGGTAGTGAAGAAAGCTTTGGTTATGGCCATGGAGAAGAAGAATGATAGGATGCTGGATTTGCTGCAGGAGTGCTTCAGTGAAGGCCTCATCACCACCAATCAGCTGACTAAAGGATTCACCCGGATTAAGGAGGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCCAAGGAAAAATTTGCTTTCTATGTGGAGCATGCACAGACCAAGGGGTGGCTTCTACCATCATTTGATTCCTCTGCCCCAGATGTCTAG
Protein sequence

>Msa1330220

MASNEGFLTEGQREMLKIASQNAENLSSSPKSPSTLLADHHHIKAPAGGKAQTAGIAVRHVRRSHSGKLGRAKKDGAGGKGTWGKLLDTEIDSHIDRNDPNYDSGEEPYELVGTTVTDPLDEFKKAVVSLIDEYFSNGDVDLAASDLRELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPTQIRDGFFMLIESADDLAVDILDAVDILALFLARAVVDDILPPAFLARARKALPESSKGAEVVKTAEKSYLSAPHHAELVERRWGGSTHITVEEMKKKIADLLKEYVDSGETLEACRCIRELGVAFFHHEVVKKALVLAMEIPSAEPLLLKLLKEAAAEGLISSSQMVKGFSRLEEGLDDLALDIPSAKALFLSFVPKAISEGWLDASFANPAGENGEFQVEDENVRKYKKEAVTIIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKRLITLALDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLENAEDTTLDILDASNELALFLARAVIDDVLAPLNLDEIGSRLPPKCSGSETVRMARTLSSARHAGERLLRCWGGGTGWAVEDAKDKITKLLEEYESGGVVGEACQCIRDLGMPFFNHEVVKKALVMAMEKKNDRMLDLLQECFSEGLITTNQLTKGFTRIKEGLDDLALDIPNAKEKFAFYVEHAQTKGWLLPSFDSSAPDV*