Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0681270 | Msa1337670 | 0.800736 | 1.252884e-48 | -8.615850e-47 |
| Msa0701830 | Msa1337670 | 0.813194 | 2.895625e-51 | -8.615850e-47 |
| Msa0703360 | Msa1337670 | 0.802426 | 5.642434e-49 | -8.615850e-47 |
| Msa0792540 | Msa1337670 | 0.800308 | 1.531742e-48 | -8.615850e-47 |
| Msa1297290 | Msa1337670 | 0.812701 | 3.713330e-51 | -8.615850e-47 |
| Msa1337670 | Msa1385000 | 0.812209 | 4.757414e-51 | -8.615850e-47 |
| Msa1004840 | Msa1337670 | 0.803738 | 3.021237e-49 | -8.615850e-47 |
| Msa0326940 | Msa1337670 | 0.812197 | 4.784868e-51 | -8.615850e-47 |
| Msa0900620 | Msa1337670 | 0.800675 | 1.289739e-48 | -8.615850e-47 |
| Msa0935670 | Msa1337670 | 0.801857 | 7.388460e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 425 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATGTCCTTTGTCTTCTA+AGG | 0.262648 | tig0001526:-343493 | Msa1337670:CDS |
| ATCATACTCTCTTAAGAAAC+TGG | 0.305589 | tig0001526:+338317 | None:intergenic |
| CTTGGTAGTTTGATTCTTCA+AGG | 0.360717 | tig0001526:+343331 | None:intergenic |
| TGCCTCCTTGTGAAGGTTCA+CGG | 0.375898 | tig0001526:-344699 | Msa1337670:CDS |
| ATGGACATCATTGTATAAAC+TGG | 0.384946 | tig0001526:+343511 | None:intergenic |
| CACATGAAGTGCTTGAAACT+TGG | 0.391940 | tig0001526:+343313 | None:intergenic |
| GCCTCCTTGTGAAGGTTCAC+GGG | 0.417382 | tig0001526:-344698 | Msa1337670:CDS |
| TTTGTTAGTTTGTAAGATGT+TGG | 0.431169 | tig0001526:-338210 | Msa1337670:three_prime_UTR |
| AAGCTTAAGTTATCAATAGT+TGG | 0.445003 | tig0001526:-338274 | Msa1337670:three_prime_UTR |
| CAATCTTTGAATCATATTTG+AGG | 0.445295 | tig0001526:+338361 | None:intergenic |
| AACTATTGATAACTTAAGCT+TGG | 0.448014 | tig0001526:+338276 | None:intergenic |
| TTGATTATAAGAGTGCAGTT+TGG | 0.450961 | tig0001526:-343359 | Msa1337670:intron |
| TCTTCATTCAGGGCAATTAG+TGG | 0.457739 | tig0001526:-344744 | Msa1337670:intron |
| CTCTCTTAAGAAACTGGAAC+CGG | 0.457877 | tig0001526:+338323 | None:intergenic |
| ACACTTCAGCAGATGTTGTA+AGG | 0.481704 | tig0001526:+338391 | None:intergenic |
| TAAGAAACTGGAACCGGAGA+AGG | 0.508578 | tig0001526:+338329 | None:intergenic |
| GTTCTATAAGCATAAGAGCT+TGG | 0.516550 | tig0001526:-338241 | Msa1337670:three_prime_UTR |
| TATTGCAGGTTTGCTAAACT+AGG | 0.517923 | tig0001526:-342788 | Msa1337670:intron |
| ATTGCGTTGAGAACCTTCTC+CGG | 0.531617 | tig0001526:-338342 | Msa1337670:three_prime_UTR |
| CTTTGAATCATATTTGAGGT+CGG | 0.533182 | tig0001526:+338365 | None:intergenic |
| AGAGCACAATGAACGACATC+AGG | 0.533362 | tig0001526:-342718 | Msa1337670:three_prime_UTR |
| ACTTCTCTTCAGACCTTGCA+AGG | 0.566682 | tig0001526:-343269 | Msa1337670:intron |
| CACACTCTGCCTCCTTGTGA+AGG | 0.590509 | tig0001526:-344706 | Msa1337670:CDS |
| TAACAAGTCTTACAAACATG+TGG | 0.599519 | tig0001526:+338185 | None:intergenic |
| GGTATAGGAAGTACCTTGCA+AGG | 0.602667 | tig0001526:+343256 | None:intergenic |
| TTGCAAGGTCTGAAGAGAAG+TGG | 0.616653 | tig0001526:+343271 | None:intergenic |
| GAAAGCGCCTTAGAAGACAA+AGG | 0.635080 | tig0001526:+343486 | None:intergenic |
| TTTGCTAAACTAGGATGACA+AGG | 0.647717 | tig0001526:-342779 | Msa1337670:exon |
| CCTCCTTGTGAAGGTTCACG+GGG | 0.649020 | tig0001526:-344697 | Msa1337670:intron |
| GCTTTCAAAGAGTTCCAAAG+AGG | 0.653110 | tig0001526:-343469 | Msa1337670:intron |
| CCCCGTGAACCTTCACAAGG+AGG | 0.677686 | tig0001526:+344697 | None:intergenic |
| GCCTTAGAAGACAAAGGACA+TGG | 0.682838 | tig0001526:+343492 | None:intergenic |
| TTACCCCGTGAACCTTCACA+AGG | 0.702770 | tig0001526:+344694 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATATAAATTATTT+TGG | - | tig0001526:338579-338598 | Msa1337670:intron | 0.0% |
| !! | AAGTATATTATAATTCTTAA+TGG | + | tig0001526:340992-341011 | None:intergenic | 10.0% |
| !!! | GTTTTATATATATATAAAGT+CGG | + | tig0001526:345060-345079 | None:intergenic | 10.0% |
| !!! | TTATTTGATTTGTTGTTTTT+TGG | - | tig0001526:338515-338534 | Msa1337670:intron | 15.0% |
| !! | TGATAAATAGTATACAATAT+CGG | + | tig0001526:339317-339336 | None:intergenic | 15.0% |
| !!! | TTGAAGGATTTTTTTTTTAA+CGG | - | tig0001526:339714-339733 | Msa1337670:intron | 15.0% |
| !!! | TTATATTTTTAATACCTCTT+TGG | + | tig0001526:340398-340417 | None:intergenic | 15.0% |
| !!! | GAGGTATTAAAAATATAAAT+TGG | - | tig0001526:340400-340419 | Msa1337670:intron | 15.0% |
| !!! | AATTTTCAAAAGAATAAGAA+TGG | - | tig0001526:341109-341128 | Msa1337670:intron | 15.0% |
| !! | AAAACAAGATTAATCTTATA+TGG | - | tig0001526:341385-341404 | Msa1337670:intron | 15.0% |
| !!! | TATTTTTTTTTGGAAAAGTT+TGG | + | tig0001526:341758-341777 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTAAGGTACAAA+GGG | + | tig0001526:341827-341846 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTTAAGGTACAA+AGG | + | tig0001526:341828-341847 | None:intergenic | 15.0% |
| !! | TTTGTACCTTAAAAAAAAAT+TGG | - | tig0001526:341827-341846 | Msa1337670:intron | 15.0% |
| !!! | TGAAAACCAATTTTTTTTTA+AGG | + | tig0001526:341836-341855 | None:intergenic | 15.0% |
| !! | TGTAATTATTAGATCAAAAA+AGG | + | tig0001526:342560-342579 | None:intergenic | 15.0% |
| !! | AAATAATATGATTGTTCAAT+AGG | + | tig0001526:342846-342865 | None:intergenic | 15.0% |
| !! | TGTGAGTATATATATATATA+TGG | - | tig0001526:344063-344082 | Msa1337670:intron | 15.0% |
| !! | AAACTTAAATTACATACAAT+TGG | + | tig0001526:344089-344108 | None:intergenic | 15.0% |
| !! | ATGTTGTTAAATTTATTCTT+TGG | + | tig0001526:344169-344188 | None:intergenic | 15.0% |
| !! | ATAAATTTAACAACATATCA+TGG | - | tig0001526:344173-344192 | Msa1337670:intron | 15.0% |
| !!! | ACATACAATTTTTTATGATA+TGG | - | tig0001526:344963-344982 | Msa1337670:intron | 15.0% |
| !! | AAGGGAAATATATATAAATT+TGG | + | tig0001526:345030-345049 | None:intergenic | 15.0% |
| !! | TAAATTCACATTACATAATC+TGG | - | tig0001526:338425-338444 | Msa1337670:intron | 20.0% |
| !! | AAATTCACATTACATAATCT+GGG | - | tig0001526:338426-338445 | Msa1337670:intron | 20.0% |
| !!! | TCATTTATTTGATTTGTTAC+TGG | - | tig0001526:338455-338474 | Msa1337670:intron | 20.0% |
| !! | TACTAGTACTTACTATAAAT+TGG | - | tig0001526:338745-338764 | Msa1337670:intron | 20.0% |
| !! | CTAAAACTCATAAATGTTAA+TGG | - | tig0001526:339180-339199 | Msa1337670:intron | 20.0% |
| !! | ATTTCAGCATAAATATAGAA+GGG | + | tig0001526:339900-339919 | None:intergenic | 20.0% |
| !! | GTAACAATTAGACAAAATTA+AGG | - | tig0001526:340023-340042 | Msa1337670:intron | 20.0% |
| !! | TAAATTATTGTTTGGTTAAC+AGG | - | tig0001526:340080-340099 | Msa1337670:intron | 20.0% |
| !!! | TTGTTGCTTTCATATTTTAT+TGG | - | tig0001526:340158-340177 | Msa1337670:intron | 20.0% |
| !!! | AGACATGATACATAATTTTT+TGG | - | tig0001526:340282-340301 | Msa1337670:intron | 20.0% |
| !!! | TAATTGCAAGTATTTTAATC+AGG | + | tig0001526:341021-341040 | None:intergenic | 20.0% |
| !!! | AAAATTGGTTTTCAAATAGT+TGG | - | tig0001526:341842-341861 | Msa1337670:intron | 20.0% |
| !!! | GGATAGAGTAATTTTTAATT+TGG | - | tig0001526:342440-342459 | Msa1337670:intron | 20.0% |
| !! | ATATTATTTGTCATAGCTTA+CGG | - | tig0001526:342857-342876 | Msa1337670:intron | 20.0% |
| !!! | ATGATTTTTGTTTAGGATTT+TGG | - | tig0001526:343422-343441 | Msa1337670:intron | 20.0% |
| !! | CAACATTAATTCAATATTGA+TGG | + | tig0001526:343561-343580 | None:intergenic | 20.0% |
| !! | GACTATTTATGTTATATATG+TGG | - | tig0001526:343595-343614 | Msa1337670:intron | 20.0% |
| !!! | TTTTTTTACTACGAATTCTA+TGG | + | tig0001526:343749-343768 | None:intergenic | 20.0% |
| !! | TATTATATTAAACCTGTACT+CGG | + | tig0001526:344201-344220 | None:intergenic | 20.0% |
| !!! | ATTTAGACACTAATTTTTTG+AGG | + | tig0001526:344235-344254 | None:intergenic | 20.0% |
| !! | AAAAAAAAACATACAAGCTT+TGG | + | tig0001526:344392-344411 | None:intergenic | 20.0% |
| !! | ATTGAGTTTATTAAGTAACA+TGG | - | tig0001526:344439-344458 | Msa1337670:intron | 20.0% |
| !!! | AATATAGTGTTATTGCTTAA+TGG | - | tig0001526:344713-344732 | Msa1337670:CDS | 20.0% |
| !! | CATAAAATCAAAATCTTCTA+TGG | + | tig0001526:344862-344881 | None:intergenic | 20.0% |
| !! | TATAAAGTCGGAAATTTAAA+GGG | + | tig0001526:345048-345067 | None:intergenic | 20.0% |
| !! | ATATAAAGTCGGAAATTTAA+AGG | + | tig0001526:345049-345068 | None:intergenic | 20.0% |
| ! | ACATAATACTAAATTGCTAG+AGG | + | tig0001526:338334-338353 | None:intergenic | 25.0% |
| !! | AGTATTATGTATTTCTGTTG+TGG | - | tig0001526:338344-338363 | Msa1337670:three_prime_UTR | 25.0% |
| ! | TATAGTAAGTACTAGTACTA+AGG | + | tig0001526:338742-338761 | None:intergenic | 25.0% |
| ! | CAAGTAAAAACCAAAAAATG+AGG | + | tig0001526:338969-338988 | None:intergenic | 25.0% |
| !!! | CTCATTTTTTGGTTTTTACT+TGG | - | tig0001526:338967-338986 | Msa1337670:intron | 25.0% |
| ! | ACTTGGTTACCAAATAATAT+TGG | - | tig0001526:338984-339003 | Msa1337670:intron | 25.0% |
| ! | CTTGGTTACCAAATAATATT+GGG | - | tig0001526:338985-339004 | Msa1337670:intron | 25.0% |
| ! | TTGGTTACCAAATAATATTG+GGG | - | tig0001526:338986-339005 | Msa1337670:intron | 25.0% |
| ! | TAACATGTAAGATTGAAATG+TGG | + | tig0001526:339047-339066 | None:intergenic | 25.0% |
| !!! | ATCTGAAAATGTTCTTGTTT+TGG | - | tig0001526:339077-339096 | Msa1337670:intron | 25.0% |
| !! | TTTGGTTTATTTCTTCATTC+AGG | - | tig0001526:339095-339114 | Msa1337670:intron | 25.0% |
| !! | TTGGTTTATTTCTTCATTCA+GGG | - | tig0001526:339096-339115 | Msa1337670:intron | 25.0% |
| ! | GTTATCTTTCCACTTTAAAT+AGG | - | tig0001526:339230-339249 | Msa1337670:intron | 25.0% |
| ! | AATGAGATAGTTAGTTAGTT+TGG | - | tig0001526:339506-339525 | Msa1337670:intron | 25.0% |
| ! | CAACATAGTTAGAAGAAATA+AGG | - | tig0001526:339539-339558 | Msa1337670:intron | 25.0% |
| ! | ACAATAATGTTGAACTTCAA+GGG | + | tig0001526:339627-339646 | None:intergenic | 25.0% |
| !! | TAAGCACATTCTTTGATAAT+TGG | - | tig0001526:339757-339776 | Msa1337670:intron | 25.0% |
| !! | CTTTGATAATTGGATAACTA+AGG | - | tig0001526:339767-339786 | Msa1337670:intron | 25.0% |
| !!! | AAATTTTAGGAGAAAACTGA+AGG | - | tig0001526:339801-339820 | Msa1337670:intron | 25.0% |
| ! | GATTTCAGCATAAATATAGA+AGG | + | tig0001526:339901-339920 | None:intergenic | 25.0% |
| !! | TTTCTGTGTAAATTTTGTTG+TGG | - | tig0001526:339961-339980 | Msa1337670:intron | 25.0% |
| ! | TGGTGGTTTAAATTATTGTT+TGG | - | tig0001526:340072-340091 | Msa1337670:intron | 25.0% |
| ! | TGAAAGCAACAAGTAAAAAA+AGG | + | tig0001526:340150-340169 | None:intergenic | 25.0% |
| ! | AAATATGATCGAGATAATAG+CGG | - | tig0001526:340714-340733 | Msa1337670:intron | 25.0% |
| !!! | TTGTTGATGAGATTTCTTTT+AGG | - | tig0001526:340777-340796 | Msa1337670:intron | 25.0% |
| ! | TACAATAACAAAACACATCA+GGG | + | tig0001526:340819-340838 | None:intergenic | 25.0% |
| ! | GAAATTGTAATGATTATTGC+AGG | - | tig0001526:341048-341067 | Msa1337670:intron | 25.0% |
| ! | AACAACAAAATATCAACACA+AGG | + | tig0001526:341566-341585 | None:intergenic | 25.0% |
| !! | TAAAAATCGCTTTGAACTAA+TGG | - | tig0001526:341596-341615 | Msa1337670:intron | 25.0% |
| !!! | AAGGGAGAGATATTTTTTTT+TGG | + | tig0001526:341768-341787 | None:intergenic | 25.0% |
| !!! | TTTTAGATTAGAACTGACTT+TGG | - | tig0001526:342253-342272 | Msa1337670:intron | 25.0% |
| !!! | ATCTTTTGTTTATGATCGAT+AGG | - | tig0001526:342419-342438 | Msa1337670:intron | 25.0% |
| ! | TTTCTTTATCAGCATGAAAT+TGG | - | tig0001526:342612-342631 | Msa1337670:intron | 25.0% |
| ! | TAGTTAGATGATTGTTCAAT+AGG | - | tig0001526:342696-342715 | Msa1337670:three_prime_UTR | 25.0% |
| ! | TATTATTTGTCATAGCTTAC+GGG | - | tig0001526:342858-342877 | Msa1337670:intron | 25.0% |
| !!! | AAATACCTGTGATTTTTCAA+AGG | - | tig0001526:343347-343366 | Msa1337670:CDS | 25.0% |
| !! | TTCAAAGGCTTTAATTTCAT+AGG | - | tig0001526:343362-343381 | Msa1337670:intron | 25.0% |
| ! | CTAAACAAAAATCATGTTGA+TGG | + | tig0001526:343417-343436 | None:intergenic | 25.0% |
| !!! | CATCAACATGATTTTTGTTT+AGG | - | tig0001526:343415-343434 | Msa1337670:intron | 25.0% |
| !! | ATTTGCTTTATTGTTAACTC+GGG | + | tig0001526:343522-343541 | None:intergenic | 25.0% |
| !! | CATTTGCTTTATTGTTAACT+CGG | + | tig0001526:343523-343542 | None:intergenic | 25.0% |
| ! | CCTGGTATATATTTACTTAT+AGG | + | tig0001526:343632-343651 | None:intergenic | 25.0% |
| ! | CCTATAAGTAAATATATACC+AGG | - | tig0001526:343629-343648 | Msa1337670:intron | 25.0% |
| ! | TATTGAGTTAATTCTTTCCT+TGG | - | tig0001526:343779-343798 | Msa1337670:intron | 25.0% |
| ! | TTTACTAAACATTAGTTCCA+AGG | + | tig0001526:343799-343818 | None:intergenic | 25.0% |
| ! | AATTAATGCTTGGTTATACA+AGG | + | tig0001526:343985-344004 | None:intergenic | 25.0% |
| ! | TGTATAACCAAGCATTAATT+TGG | - | tig0001526:343985-344004 | Msa1337670:intron | 25.0% |
| ! | AATAGTTCCAAATTAATGCT+TGG | + | tig0001526:343995-344014 | None:intergenic | 25.0% |
| ! | TAATAGAAATCCAAGAAGAA+TGG | - | tig0001526:344534-344553 | Msa1337670:intron | 25.0% |
| !! | CAAAATATATTTGCTAGAAG+TGG | - | tig0001526:344622-344641 | Msa1337670:intron | 25.0% |
| ! | AAAATGTATAGCCTCTAATA+TGG | + | tig0001526:344924-344943 | None:intergenic | 25.0% |
| !!! | TTATATGAAAAAAAAGCGCT+AGG | + | tig0001526:345136-345155 | None:intergenic | 25.0% |
| ! | TGTAACAATAGGTTTACAAT+AGG | + | tig0001526:345174-345193 | None:intergenic | 25.0% |
| ! | CAATCTTTGAATCATATTTG+AGG | + | tig0001526:345492-345511 | None:intergenic | 25.0% |
| !! | AACTATTGATAACTTAAGCT+TGG | + | tig0001526:345577-345596 | None:intergenic | 25.0% |
| ! | AAGCTTAAGTTATCAATAGT+TGG | - | tig0001526:345576-345595 | Msa1337670:intron | 25.0% |
| !!! | TTTGTTAGTTTGTAAGATGT+TGG | - | tig0001526:345640-345659 | Msa1337670:intron | 25.0% |
| ! | AATTTACTGGTTAATGACGA+CGG | + | tig0001526:338310-338329 | None:intergenic | 30.0% |
| AATTGCTAGAGGAAATTTAC+TGG | + | tig0001526:338323-338342 | None:intergenic | 30.0% | |
| ! | GTATTTCTGTTGTGGATTTA+AGG | - | tig0001526:338352-338371 | Msa1337670:three_prime_UTR | 30.0% |
| ! | TGTTGTGGATTTAAGGATTT+TGG | - | tig0001526:338359-338378 | Msa1337670:three_prime_UTR | 30.0% |
| AAGTGGCAATATGTAATTCA+TGG | - | tig0001526:338383-338402 | Msa1337670:three_prime_UTR | 30.0% | |
| AATATGTAATTCATGGTGTC+AGG | - | tig0001526:338390-338409 | Msa1337670:three_prime_UTR | 30.0% | |
| TGAACAAGCAATTTGTAAGA+TGG | - | tig0001526:338615-338634 | Msa1337670:intron | 30.0% | |
| AAATCACTATGTTACTCCTA+AGG | - | tig0001526:338709-338728 | Msa1337670:intron | 30.0% | |
| GTACTAAGGAAAAAAACCTT+AGG | + | tig0001526:338728-338747 | None:intergenic | 30.0% | |
| TTACCAAATAATATTGGGGA+TGG | - | tig0001526:338990-339009 | Msa1337670:intron | 30.0% | |
| TTACCATCCCCAATATTATT+TGG | + | tig0001526:338996-339015 | None:intergenic | 30.0% | |
| AGTATCAAGCCTATTTAAAG+TGG | + | tig0001526:339242-339261 | None:intergenic | 30.0% | |
| CATTTGTGAATATGATGCAA+GGG | - | tig0001526:339430-339449 | Msa1337670:intron | 30.0% | |
| ATTTGTGAATATGATGCAAG+GGG | - | tig0001526:339431-339450 | Msa1337670:intron | 30.0% | |
| TAGTAGAGACTTAAGAGTAA+TGG | + | tig0001526:339461-339480 | None:intergenic | 30.0% | |
| ! | AGTTAGTTAGTTTGGTTAGT+TGG | - | tig0001526:339514-339533 | Msa1337670:intron | 30.0% |
| ! | AATAAGGCATGTTGTTTAAG+AGG | - | tig0001526:339555-339574 | Msa1337670:intron | 30.0% |
| ! | ATAAGGCATGTTGTTTAAGA+GGG | - | tig0001526:339556-339575 | Msa1337670:intron | 30.0% |
| GACAATAATGTTGAACTTCA+AGG | + | tig0001526:339628-339647 | None:intergenic | 30.0% | |
| ! | GGAAAGAGATTGCAAATTTT+AGG | - | tig0001526:339788-339807 | Msa1337670:intron | 30.0% |
| !!! | AACGTTTTGGTTTCAAGTAA+GGG | - | tig0001526:339827-339846 | Msa1337670:intron | 30.0% |
| GAGCTACAATACAAGATATA+TGG | - | tig0001526:339864-339883 | Msa1337670:intron | 30.0% | |
| TCATCCATATAACAAGATTG+TGG | - | tig0001526:339919-339938 | Msa1337670:intron | 30.0% | |
| CATCCATATAACAAGATTGT+GGG | - | tig0001526:339920-339939 | Msa1337670:intron | 30.0% | |
| !! | TGTGTAAATTTTGTTGTGGA+TGG | - | tig0001526:339965-339984 | Msa1337670:intron | 30.0% |
| CACTATAAACTTGGGATTAT+AGG | - | tig0001526:339991-340010 | Msa1337670:intron | 30.0% | |
| ! | TTCTGCATCTTGATTGTTTT+TGG | - | tig0001526:340052-340071 | Msa1337670:intron | 30.0% |
| TATTGTTTGGTTAACAGGTT+AGG | - | tig0001526:340085-340104 | Msa1337670:intron | 30.0% | |
| ATGGACATCATTGTATAAAC+TGG | + | tig0001526:340342-340361 | None:intergenic | 30.0% | |
| ! | TTGATTATAAGAGTGCAGTT+TGG | - | tig0001526:340491-340510 | Msa1337670:intron | 30.0% |
| TCCTATACCATTATCATTTG+AGG | - | tig0001526:340608-340627 | Msa1337670:intron | 30.0% | |
| CCTATACCATTATCATTTGA+GGG | - | tig0001526:340609-340628 | Msa1337670:intron | 30.0% | |
| AATATGATCGAGATAATAGC+GGG | - | tig0001526:340715-340734 | Msa1337670:intron | 30.0% | |
| !! | ATGTTACACCTACTTTTACA+TGG | - | tig0001526:340742-340761 | Msa1337670:intron | 30.0% |
| CTACAATAACAAAACACATC+AGG | + | tig0001526:340820-340839 | None:intergenic | 30.0% | |
| !!! | CTGATGTGTTTTGTTATTGT+AGG | - | tig0001526:340818-340837 | Msa1337670:intron | 30.0% |
| TTTAGTGTTGTGTAAACCAA+AGG | - | tig0001526:340873-340892 | Msa1337670:intron | 30.0% | |
| AAGTTCCACTACTACAAAAT+TGG | - | tig0001526:341187-341206 | Msa1337670:intron | 30.0% | |
| AGTTCCACTACTACAAAATT+GGG | - | tig0001526:341188-341207 | Msa1337670:intron | 30.0% | |
| ! | TTTTCCCAATTTTGTAGTAG+TGG | + | tig0001526:341195-341214 | None:intergenic | 30.0% |
| !! | AGTGTTAAAAGCGCTATTTA+TGG | + | tig0001526:341227-341246 | None:intergenic | 30.0% |
| AAGCGCTATAAATCAAAACA+CGG | - | tig0001526:341248-341267 | Msa1337670:intron | 30.0% | |
| CTATATAGACTTAGACGTAT+AGG | + | tig0001526:341308-341327 | None:intergenic | 30.0% | |
| TATCTCTCCCTTCAAAAAAT+TGG | - | tig0001526:341776-341795 | Msa1337670:intron | 30.0% | |
| ATCTCTCCCTTCAAAAAATT+GGG | - | tig0001526:341777-341796 | Msa1337670:intron | 30.0% | |
| TTAAGGTACAAAGGGATTTA+GGG | + | tig0001526:341819-341838 | None:intergenic | 30.0% | |
| ! | TTTAAGGTACAAAGGGATTT+AGG | + | tig0001526:341820-341839 | None:intergenic | 30.0% |
| AATCTCACGACAAATAAGAA+AGG | + | tig0001526:342152-342171 | None:intergenic | 30.0% | |
| ! | TCTAAAATTTGTGAATCGCA+GGG | + | tig0001526:342240-342259 | None:intergenic | 30.0% |
| ! | ATCTAAAATTTGTGAATCGC+AGG | + | tig0001526:342241-342260 | None:intergenic | 30.0% |
| ACTTGTACTTGGTTTAGAAA+CGG | - | tig0001526:342521-342540 | Msa1337670:intron | 30.0% | |
| TTTATCAGCATGAAATTGGT+TGG | - | tig0001526:342616-342635 | Msa1337670:intron | 30.0% | |
| ATGAAATTGGTTGGAAACTA+TGG | - | tig0001526:342625-342644 | Msa1337670:intron | 30.0% | |
| !!! | ATTGACTTTTTTAGCAACGT+GGG | + | tig0001526:342735-342754 | None:intergenic | 30.0% |
| !!! | AATTGACTTTTTTAGCAACG+TGG | + | tig0001526:342736-342755 | None:intergenic | 30.0% |
| ! | TCAGAATTTTACAATGACGA+TGG | - | tig0001526:342920-342939 | Msa1337670:intron | 30.0% |
| CCAAATTTATTACGACTTAC+CGG | - | tig0001526:342966-342985 | Msa1337670:intron | 30.0% | |
| !!! | GTTCTGTTTGTTGTTTTTCA+TGG | + | tig0001526:343110-343129 | None:intergenic | 30.0% |
| ATTTAATGTGTGCATAACAC+AGG | + | tig0001526:343274-343293 | None:intergenic | 30.0% | |
| TGCATCTCAAACATTATACT+AGG | + | tig0001526:343309-343328 | None:intergenic | 30.0% | |
| ! | TAAAGCCTTTGAAAAATCAC+AGG | + | tig0001526:343355-343374 | None:intergenic | 30.0% |
| ! | AAAGGCTTTAATTTCATAGG+AGG | - | tig0001526:343365-343384 | Msa1337670:intron | 30.0% |
| AATTTCATAGGAGGTGAAAT+TGG | - | tig0001526:343374-343393 | Msa1337670:intron | 30.0% | |
| !! | GGATTTTGGAGAAAATGAAT+AGG | - | tig0001526:343436-343455 | Msa1337670:intron | 30.0% |
| CTACATATTAAAACAACTCC+TGG | + | tig0001526:343650-343669 | None:intergenic | 30.0% | |
| ! | TTTATATGTGCATTGATGCA+AGG | + | tig0001526:343683-343702 | None:intergenic | 30.0% |
| TTTACTACGAATTCTATGGT+GGG | + | tig0001526:343745-343764 | None:intergenic | 30.0% | |
| ! | TTTTACTACGAATTCTATGG+TGG | + | tig0001526:343746-343765 | None:intergenic | 30.0% |
| AGTTCAAACATTACTAACAC+AGG | + | tig0001526:343864-343883 | None:intergenic | 30.0% | |
| CAAGAAAATGGTATAGATTG+CGG | - | tig0001526:344311-344330 | Msa1337670:intron | 30.0% | |
| AAGAAAATGGTATAGATTGC+GGG | - | tig0001526:344312-344331 | Msa1337670:intron | 30.0% | |
| AATATATGCAGTACACATTG+AGG | - | tig0001526:344478-344497 | Msa1337670:intron | 30.0% | |
| ATATATGCAGTACACATTGA+GGG | - | tig0001526:344479-344498 | Msa1337670:intron | 30.0% | |
| ! | TATTGCTTAATGGTGTTTTC+TGG | - | tig0001526:344723-344742 | Msa1337670:CDS | 30.0% |
| !! | GTGTTTTCTGGTATATATTC+AGG | - | tig0001526:344735-344754 | Msa1337670:CDS | 30.0% |
| !! | TTTTCTGGTATATATTCAGG+TGG | - | tig0001526:344738-344757 | Msa1337670:intron | 30.0% |
| ! | CATTTTTATCCAAAACAAGC+AGG | + | tig0001526:344802-344821 | None:intergenic | 30.0% |
| TATCCATGTTACCATATTAG+AGG | - | tig0001526:344910-344929 | Msa1337670:intron | 30.0% | |
| !! | TAAAAGCGCTATGTAACAAT+AGG | + | tig0001526:345185-345204 | None:intergenic | 30.0% |
| ! | GTTTTTAAACCTGTCTTAGA+TGG | - | tig0001526:345218-345237 | Msa1337670:intron | 30.0% |
| !!! | ATTTTGGAAAGCGCTATTTA+TGG | - | tig0001526:345246-345265 | Msa1337670:intron | 30.0% |
| ! | ATAAAGTGCTAGCTAAAGAA+GGG | + | tig0001526:345314-345333 | None:intergenic | 30.0% |
| ! | TATAAAGTGCTAGCTAAAGA+AGG | + | tig0001526:345315-345334 | None:intergenic | 30.0% |
| TCGAACACTACTACAAAAAT+GGG | + | tig0001526:345430-345449 | None:intergenic | 30.0% | |
| TTCGAACACTACTACAAAAA+TGG | + | tig0001526:345431-345450 | None:intergenic | 30.0% | |
| ! | CTTTGAATCATATTTGAGGT+CGG | + | tig0001526:345488-345507 | None:intergenic | 30.0% |
| ATCATACTCTCTTAAGAAAC+TGG | + | tig0001526:345536-345555 | None:intergenic | 30.0% | |
| TAACAAGTCTTACAAACATG+TGG | + | tig0001526:345668-345687 | None:intergenic | 30.0% | |
| TTCATCCTGCTTGATTCTTT+GGG | - | tig0001526:338170-338189 | Msa1337670:three_prime_UTR | 35.0% | |
| CATGTAGATCTTCAAGATGA+AGG | + | tig0001526:338269-338288 | None:intergenic | 35.0% | |
| !! | GATTTAAGGATTTTGGCAAG+TGG | - | tig0001526:338366-338385 | Msa1337670:three_prime_UTR | 35.0% |
| TTTCTTGATGTCTCTGTCTA+AGG | - | tig0001526:338644-338663 | Msa1337670:intron | 35.0% | |
| ! | TGTACTATGCGTCTTTTCTA+TGG | - | tig0001526:338866-338885 | Msa1337670:intron | 35.0% |
| !!! | CTCATAGTCTCCTCATTTTT+TGG | - | tig0001526:338956-338975 | Msa1337670:intron | 35.0% |
| CCTTGCATCATATTCACAAA+TGG | + | tig0001526:339432-339451 | None:intergenic | 35.0% | |
| CCATTTGTGAATATGATGCA+AGG | - | tig0001526:339429-339448 | Msa1337670:intron | 35.0% | |
| TTTGTGAATATGATGCAAGG+GGG | - | tig0001526:339432-339451 | Msa1337670:intron | 35.0% | |
| ! | CTTGTCATGTTGGTGTTTAT+AGG | - | tig0001526:339586-339605 | Msa1337670:intron | 35.0% |
| !! | ACTACGAGTTGATATAAGCT+TGG | + | tig0001526:339672-339691 | None:intergenic | 35.0% |
| CTTATATCAACTCGTAGTTG+TGG | - | tig0001526:339674-339693 | Msa1337670:intron | 35.0% | |
| ! | AAACTGAAGGAAGAACGTTT+TGG | - | tig0001526:339814-339833 | Msa1337670:intron | 35.0% |
| !!! | GAACGTTTTGGTTTCAAGTA+AGG | - | tig0001526:339826-339845 | Msa1337670:intron | 35.0% |
| AAGTAAGGGAATGAGAAACT+TGG | - | tig0001526:339841-339860 | Msa1337670:intron | 35.0% | |
| AGTAAGGGAATGAGAAACTT+GGG | - | tig0001526:339842-339861 | Msa1337670:intron | 35.0% | |
| ! | TTGCCCACAATCTTGTTATA+TGG | + | tig0001526:339926-339945 | None:intergenic | 35.0% |
| !! | GATGGAAGCACTATAAACTT+GGG | - | tig0001526:339983-340002 | Msa1337670:intron | 35.0% |
| TTGGGATTATAGGATGTTGT+TGG | - | tig0001526:340001-340020 | Msa1337670:intron | 35.0% | |
| !!! | TGCATCTTGATTGTTTTTGG+TGG | - | tig0001526:340055-340074 | Msa1337670:intron | 35.0% |
| TAACAGGTTAGGAAATCAAC+AGG | - | tig0001526:340096-340115 | Msa1337670:intron | 35.0% | |
| AACATAATCATCTGGACTGT+TGG | + | tig0001526:340184-340203 | None:intergenic | 35.0% | |
| GAAATGGGAACATAATCATC+TGG | + | tig0001526:340192-340211 | None:intergenic | 35.0% | |
| ! | CTTGGTAGTTTGATTCTTCA+AGG | + | tig0001526:340522-340541 | None:intergenic | 35.0% |
| !! | CCCTCAAATGATAATGGTAT+AGG | + | tig0001526:340612-340631 | None:intergenic | 35.0% |
| AACAGTCCCTCAAATGATAA+TGG | + | tig0001526:340618-340637 | None:intergenic | 35.0% | |
| !!! | GTTTTGTTATTGTAGGACGT+AGG | - | tig0001526:340825-340844 | Msa1337670:intron | 35.0% |
| !! | TATTGCAGGTTTGCTAAACT+AGG | - | tig0001526:341062-341081 | Msa1337670:intron | 35.0% |
| TTTGCTAAACTAGGATGACA+AGG | - | tig0001526:341071-341090 | Msa1337670:intron | 35.0% | |
| !! | TTTCAAAAAAGCGCTAGCTA+AGG | + | tig0001526:341277-341296 | None:intergenic | 35.0% |
| ! | ATCTTATATGGCGCTTTTGA+TGG | - | tig0001526:341397-341416 | Msa1337670:intron | 35.0% |
| AATCGAACAAGGGATTTGAA+GGG | + | tig0001526:341543-341562 | None:intergenic | 35.0% | |
| !!! | AGGGAACCCAATTTTTTGAA+GGG | + | tig0001526:341786-341805 | None:intergenic | 35.0% |
| GATTTAGGGATTTAGAGAGA+GGG | + | tig0001526:341805-341824 | None:intergenic | 35.0% | |
| AAGTGTTCGATAATTGTGGT+CGG | + | tig0001526:341906-341925 | None:intergenic | 35.0% | |
| GAAAGGAAGGAAAATCTAGA+GGG | + | tig0001526:342135-342154 | None:intergenic | 35.0% | |
| AGAAAGGAAGGAAAATCTAG+AGG | + | tig0001526:342136-342155 | None:intergenic | 35.0% | |
| TCACGACAAATAAGAAAGGA+AGG | + | tig0001526:342148-342167 | None:intergenic | 35.0% | |
| !! | TGGACAACTTAACTTGTACT+TGG | - | tig0001526:342510-342529 | Msa1337670:intron | 35.0% |
| TATAACAATTGTCGCTCAAC+TGG | + | tig0001526:342583-342602 | None:intergenic | 35.0% | |
| AAATTGGTTGGAAACTATGG+AGG | - | tig0001526:342628-342647 | Msa1337670:intron | 35.0% | |
| AACTATGGAGGAAAACAGAA+TGG | - | tig0001526:342640-342659 | Msa1337670:intron | 35.0% | |
| ACTATGGAGGAAAACAGAAT+GGG | - | tig0001526:342641-342660 | Msa1337670:intron | 35.0% | |
| ! | GAAAACAGAATGGGTTTAGT+CGG | - | tig0001526:342650-342669 | Msa1337670:intron | 35.0% |
| !! | AATGGGTTTAGTCGGTTTTA+AGG | - | tig0001526:342658-342677 | Msa1337670:intron | 35.0% |
| CCGGTAAGTCGTAATAAATT+TGG | + | tig0001526:342969-342988 | None:intergenic | 35.0% | |
| GAACAAAGGGAACAATTACA+AGG | - | tig0001526:343008-343027 | Msa1337670:intron | 35.0% | |
| ! | CATGTTGATGGAATTCATTG+TGG | + | tig0001526:343405-343424 | None:intergenic | 35.0% |
| TTCACCATCACTATGAATCT+TGG | - | tig0001526:343706-343725 | Msa1337670:intron | 35.0% | |
| TTAGCCAAGATTCATAGTGA+TGG | + | tig0001526:343713-343732 | None:intergenic | 35.0% | |
| AGCTGGGATAACAAATTTGT+TGG | + | tig0001526:343887-343906 | None:intergenic | 35.0% | |
| AAGTACATCACAGATAACCA+AGG | + | tig0001526:343939-343958 | None:intergenic | 35.0% | |
| ! | TTTTGCATCTTCTTCACTGA+AGG | - | tig0001526:344013-344032 | Msa1337670:intron | 35.0% |
| TTTGCATCTTCTTCACTGAA+GGG | - | tig0001526:344014-344033 | Msa1337670:intron | 35.0% | |
| !! | GTTGTAAAAGTATTTCGCTC+TGG | - | tig0001526:344127-344146 | Msa1337670:intron | 35.0% |
| !! | TAAAAGTATTTCGCTCTGGA+AGG | - | tig0001526:344131-344150 | Msa1337670:intron | 35.0% |
| !! | AAAAGTATTTCGCTCTGGAA+GGG | - | tig0001526:344132-344151 | Msa1337670:intron | 35.0% |
| ! | CGCAATCTATACCATTTTCT+TGG | + | tig0001526:344313-344332 | None:intergenic | 35.0% |
| AAATCCAAGAAGAATGGTGT+CGG | - | tig0001526:344540-344559 | Msa1337670:intron | 35.0% | |
| TAGCCTCTAATATGGTAACA+TGG | + | tig0001526:344916-344935 | None:intergenic | 35.0% | |
| ! | AAATAAACGCCATCTAAGAC+AGG | + | tig0001526:345230-345249 | None:intergenic | 35.0% |
| ! | GTCTTAGATGGCGTTTATTT+TGG | - | tig0001526:345230-345249 | Msa1337670:intron | 35.0% |
| !!! | TTTTGAAGCGCTGTTGTAAA+TGG | + | tig0001526:345372-345391 | None:intergenic | 35.0% |
| !!! | GGCTTATATAGCGCTTTTTT+TGG | + | tig0001526:345409-345428 | None:intergenic | 35.0% |
| GTTCTATAAGCATAAGAGCT+TGG | - | tig0001526:345609-345628 | Msa1337670:intron | 35.0% | |
| ATGAAGATCTAGGAGTTGGA+AGG | + | tig0001526:338155-338174 | None:intergenic | 40.0% | |
| ATCAAGCAGGATGAAGATCT+AGG | + | tig0001526:338165-338184 | None:intergenic | 40.0% | |
| CTTCATCCTGCTTGATTCTT+TGG | - | tig0001526:338169-338188 | Msa1337670:three_prime_UTR | 40.0% | |
| ! | TCTGTGGATTGTCGAATCTA+CGG | - | tig0001526:338218-338237 | Msa1337670:three_prime_UTR | 40.0% |
| GCATACTATTGCTTCAGCAA+TGG | - | tig0001526:338787-338806 | Msa1337670:intron | 40.0% | |
| TTGCATCCATACAAGTTCGA+CGG | - | tig0001526:338829-338848 | Msa1337670:intron | 40.0% | |
| TCTAATCCGTCGAACTTGTA+TGG | + | tig0001526:338838-338857 | None:intergenic | 40.0% | |
| TCTTCATTCAGGGCAATTAG+TGG | - | tig0001526:339106-339125 | Msa1337670:intron | 40.0% | |
| TGCTTACACTGAATCACTGA+TGG | - | tig0001526:339273-339292 | Msa1337670:intron | 40.0% | |
| GCTTACACTGAATCACTGAT+GGG | - | tig0001526:339274-339293 | Msa1337670:intron | 40.0% | |
| CTTACACTGAATCACTGATG+GGG | - | tig0001526:339275-339294 | Msa1337670:intron | 40.0% | |
| TCTAAACCACTGTACAAGGA+AGG | + | tig0001526:339396-339415 | None:intergenic | 40.0% | |
| TGTGTCTAAACCACTGTACA+AGG | + | tig0001526:339400-339419 | None:intergenic | 40.0% | |
| ! | CATGTTGGTGTTTATAGGCT+AGG | - | tig0001526:339591-339610 | Msa1337670:intron | 40.0% |
| ! | TTGGTGTTTATAGGCTAGGT+AGG | - | tig0001526:339595-339614 | Msa1337670:intron | 40.0% |
| !! | GGATGGAAGCACTATAAACT+TGG | - | tig0001526:339982-340001 | Msa1337670:intron | 40.0% |
| TCCCATTTCATGCTTAGCTT+AGG | - | tig0001526:340203-340222 | Msa1337670:intron | 40.0% | |
| GCCTAAGCTAAGCATGAAAT+GGG | + | tig0001526:340207-340226 | None:intergenic | 40.0% | |
| AGCCTAAGCTAAGCATGAAA+TGG | + | tig0001526:340208-340227 | None:intergenic | 40.0% | |
| CATGCTTAGCTTAGGCTATT+TGG | - | tig0001526:340211-340230 | Msa1337670:intron | 40.0% | |
| TCCATGTCCTTTGTCTTCTA+AGG | - | tig0001526:340357-340376 | Msa1337670:intron | 40.0% | |
| GCTTTCAAAGAGTTCCAAAG+AGG | - | tig0001526:340381-340400 | Msa1337670:intron | 40.0% | |
| ! | CACATGAAGTGCTTGAAACT+TGG | + | tig0001526:340540-340559 | None:intergenic | 40.0% |
| CTTTCTTGTACAACACAGTC+AGG | + | tig0001526:340901-340920 | None:intergenic | 40.0% | |
| !!! | TGTTTTGAAAGCGTCGGTAT+AGG | - | tig0001526:341333-341352 | Msa1337670:intron | 40.0% |
| GAATCGAACAAGGGATTTGA+AGG | + | tig0001526:341544-341563 | None:intergenic | 40.0% | |
| CAACACAAGGAATCGAACAA+GGG | + | tig0001526:341553-341572 | None:intergenic | 40.0% | |
| TCAACACAAGGAATCGAACA+AGG | + | tig0001526:341554-341573 | None:intergenic | 40.0% | |
| TTCGAAAGCTGTGTTATGCA+GGG | + | tig0001526:341635-341654 | None:intergenic | 40.0% | |
| ATTCGAAAGCTGTGTTATGC+AGG | + | tig0001526:341636-341655 | None:intergenic | 40.0% | |
| !!! | GAGGGAACCCAATTTTTTGA+AGG | + | tig0001526:341787-341806 | None:intergenic | 40.0% |
| GGATTTAGGGATTTAGAGAG+AGG | + | tig0001526:341806-341825 | None:intergenic | 40.0% | |
| ! | GCTGAAGTGTTCGATAATTG+TGG | + | tig0001526:341910-341929 | None:intergenic | 40.0% |
| GAGTTCTTCGATTGTGCTAA+TGG | + | tig0001526:341958-341977 | None:intergenic | 40.0% | |
| GAGTGTTCGATAATTGTGGT+CGG | + | tig0001526:341985-342004 | None:intergenic | 40.0% | |
| ! | AGCTGCTTTGAATTTCAGCA+GGG | + | tig0001526:342370-342389 | None:intergenic | 40.0% |
| ! | ACCTATTGTCACTTGAGCTT+TGG | - | tig0001526:342490-342509 | Msa1337670:intron | 40.0% |
| TCCAAAGCTCAAGTGACAAT+AGG | + | tig0001526:342494-342513 | None:intergenic | 40.0% | |
| !!! | GGTTTTAAGGTGGAGCATTT+GGG | - | tig0001526:342671-342690 | Msa1337670:intron | 40.0% |
| ! | TAGCAACGTGGGCAATTTTA+AGG | + | tig0001526:342724-342743 | None:intergenic | 40.0% |
| GGTATTAGAACGCTCTATTG+TGG | - | tig0001526:342879-342898 | Msa1337670:intron | 40.0% | |
| TTGTTCCCTTTGTTCTTGCT+AGG | + | tig0001526:343003-343022 | None:intergenic | 40.0% | |
| ! | TTAGGGGTTTAGGTTCCTTA+CGG | + | tig0001526:343072-343091 | None:intergenic | 40.0% |
| GGAACCTAAACCCCTAAAAT+AGG | - | tig0001526:343075-343094 | Msa1337670:intron | 40.0% | |
| !! | AGCTCCTATTTTAGGGGTTT+AGG | + | tig0001526:343082-343101 | None:intergenic | 40.0% |
| !! | GTTAGCAGCTCCTATTTTAG+GGG | + | tig0001526:343088-343107 | None:intergenic | 40.0% |
| ! | GGTTAGCAGCTCCTATTTTA+GGG | + | tig0001526:343089-343108 | None:intergenic | 40.0% |
| ! | TGGTTAGCAGCTCCTATTTT+AGG | + | tig0001526:343090-343109 | None:intergenic | 40.0% |
| TAATGTGTGCATAACACAGG+TGG | + | tig0001526:343271-343290 | None:intergenic | 40.0% | |
| GGAGAAAATGAATAGGACCA+TGG | - | tig0001526:343443-343462 | Msa1337670:intron | 40.0% | |
| AATGAATAGGACCATGGTTG+AGG | - | tig0001526:343449-343468 | Msa1337670:intron | 40.0% | |
| ! | TGCTTTATTGTTAACTCGGG+TGG | + | tig0001526:343519-343538 | None:intergenic | 40.0% |
| TCCCAGCTAATTAAACTCAG+AGG | - | tig0001526:343899-343918 | Msa1337670:intron | 40.0% | |
| GCCTCTGAGTTTAATTAGCT+GGG | + | tig0001526:343903-343922 | None:intergenic | 40.0% | |
| AGCCTCTGAGTTTAATTAGC+TGG | + | tig0001526:343904-343923 | None:intergenic | 40.0% | |
| AGATAACCAAGGTTGGAATC+AGG | + | tig0001526:343928-343947 | None:intergenic | 40.0% | |
| ACATCACAGATAACCAAGGT+TGG | + | tig0001526:343935-343954 | None:intergenic | 40.0% | |
| CACCTAGCTAATGTACTAAC+TGG | + | tig0001526:344040-344059 | None:intergenic | 40.0% | |
| CAGTTAGTACATTAGCTAGG+TGG | - | tig0001526:344038-344057 | Msa1337670:intron | 40.0% | |
| ! | TCTATACCATTTTCTTGGCG+AGG | + | tig0001526:344308-344327 | None:intergenic | 40.0% |
| TCTGGTATATATTCAGGTGG+AGG | - | tig0001526:344741-344760 | Msa1337670:intron | 40.0% | |
| TGCAGTCTTCATCTATCTTC+TGG | + | tig0001526:344834-344853 | None:intergenic | 40.0% | |
| ACACTTCAGCAGATGTTGTA+AGG | + | tig0001526:345462-345481 | None:intergenic | 40.0% | |
| CTCTCTTAAGAAACTGGAAC+CGG | + | tig0001526:345530-345549 | None:intergenic | 40.0% | |
| CAGGATGAAGATCTAGGAGT+TGG | + | tig0001526:338159-338178 | None:intergenic | 45.0% | |
| CAACACCCAAAGAATCAAGC+AGG | + | tig0001526:338178-338197 | None:intergenic | 45.0% | |
| TCTCATCTCCATGCAATCTG+TGG | - | tig0001526:338202-338221 | Msa1337670:three_prime_UTR | 45.0% | |
| TCGACAATCCACAGATTGCA+TGG | + | tig0001526:338213-338232 | None:intergenic | 45.0% | |
| GGGAGATTGTCTTGTCATGT+TGG | - | tig0001526:339576-339595 | Msa1337670:intron | 45.0% | |
| CTTCAATACAGACTGCCAAC+AGG | + | tig0001526:339700-339719 | None:intergenic | 45.0% | |
| CTGTTGGCAGTCTGTATTGA+AGG | - | tig0001526:339698-339717 | Msa1337670:intron | 45.0% | |
| GCTTAGCTTAGGCTATTTGG+AGG | - | tig0001526:340214-340233 | Msa1337670:intron | 45.0% | |
| GCCTTAGAAGACAAAGGACA+TGG | + | tig0001526:340361-340380 | None:intergenic | 45.0% | |
| !! | GAAAGCGCCTTAGAAGACAA+AGG | + | tig0001526:340367-340386 | None:intergenic | 45.0% |
| TTGCAAGGTCTGAAGAGAAG+TGG | + | tig0001526:340582-340601 | None:intergenic | 45.0% | |
| ACTTCTCTTCAGACCTTGCA+AGG | - | tig0001526:340581-340600 | Msa1337670:intron | 45.0% | |
| !! | GGTATAGGAAGTACCTTGCA+AGG | + | tig0001526:340597-340616 | None:intergenic | 45.0% |
| CGCTTACGCCATGTAAAAGT+AGG | + | tig0001526:340753-340772 | None:intergenic | 45.0% | |
| ACAACACAGTCAGGATCCTT+TGG | + | tig0001526:340892-340911 | None:intergenic | 45.0% | |
| AGAGCACAATGAACGACATC+AGG | - | tig0001526:341132-341151 | Msa1337670:intron | 45.0% | |
| !!! | GCGCTTTGTTTTGAAAGCGT+CGG | - | tig0001526:341327-341346 | Msa1337670:intron | 45.0% |
| TGTTATGCAGGGATCGAACA+GGG | + | tig0001526:341624-341643 | None:intergenic | 45.0% | |
| ATAATTGTGGTCGGCGATGA+GGG | + | tig0001526:341897-341916 | None:intergenic | 45.0% | |
| CACTTCAGCACAATTGTGCT+AGG | - | tig0001526:341921-341940 | Msa1337670:intron | 45.0% | |
| ! | GGTGGAGTGTTCGATAATTG+TGG | + | tig0001526:341989-342008 | None:intergenic | 45.0% |
| GTCGATGAGTTTACGTTTGG+TGG | + | tig0001526:342007-342026 | None:intergenic | 45.0% | |
| GACGTCGATGAGTTTACGTT+TGG | + | tig0001526:342010-342029 | None:intergenic | 45.0% | |
| GAGGTTGGAGATACAGTTTC+CGG | + | tig0001526:342035-342054 | None:intergenic | 45.0% | |
| TGTTACGACGCAAATCAAGC+TGG | + | tig0001526:342175-342194 | None:intergenic | 45.0% | |
| CGTCGTAACAGATCAAAGCT+CGG | - | tig0001526:342185-342204 | Msa1337670:intron | 45.0% | |
| AGGGATTTAGCACGCAATAG+CGG | + | tig0001526:342221-342240 | None:intergenic | 45.0% | |
| ! | GCTGCTTTGAATTTCAGCAG+GGG | + | tig0001526:342369-342388 | None:intergenic | 45.0% |
| ! | CAGCTGCTTTGAATTTCAGC+AGG | + | tig0001526:342371-342390 | None:intergenic | 45.0% |
| !!! | GGGTTTAGTCGGTTTTAAGG+TGG | - | tig0001526:342661-342680 | Msa1337670:intron | 45.0% |
| !!! | CGGTTTTAAGGTGGAGCATT+TGG | - | tig0001526:342670-342689 | Msa1337670:intron | 45.0% |
| ACACGCCTAGCAAGAACAAA+GGG | - | tig0001526:342995-343014 | Msa1337670:intron | 45.0% | |
| AGGGAACAATTACAAGGTGC+CGG | - | tig0001526:343014-343033 | Msa1337670:intron | 45.0% | |
| !! | TACAAGGTGCCGGAAATATG+CGG | - | tig0001526:343024-343043 | Msa1337670:intron | 45.0% |
| TCCTTACGGGACGTTTATGT+GGG | + | tig0001526:343058-343077 | None:intergenic | 45.0% | |
| TTCCTTACGGGACGTTTATG+TGG | + | tig0001526:343059-343078 | None:intergenic | 45.0% | |
| ! | TAGGGGTTTAGGTTCCTTAC+GGG | + | tig0001526:343071-343090 | None:intergenic | 45.0% |
| TAGCAGAACCAAAATCCAGC+AGG | - | tig0001526:343144-343163 | Msa1337670:intron | 45.0% | |
| AGCAGAACCAAAATCCAGCA+GGG | - | tig0001526:343145-343164 | Msa1337670:intron | 45.0% | |
| !! | GGTGGACTATCTACTAGGAA+TGG | + | tig0001526:343253-343272 | None:intergenic | 45.0% |
| !! | ACACAGGTGGACTATCTACT+AGG | + | tig0001526:343258-343277 | None:intergenic | 45.0% |
| ATATACCACGACCTCAACCA+TGG | + | tig0001526:343463-343482 | None:intergenic | 45.0% | |
| ! | CGAATTCTATGGTGGGAAGA+AGG | + | tig0001526:343738-343757 | None:intergenic | 45.0% |
| CAAGTACTTGCTTTCTCCAC+TGG | - | tig0001526:343959-343978 | Msa1337670:intron | 45.0% | |
| GGCCAGTTAGTACATTAGCT+AGG | - | tig0001526:344035-344054 | Msa1337670:intron | 45.0% | |
| CATATCATGGATCCGAGTAC+AGG | - | tig0001526:344186-344205 | Msa1337670:intron | 45.0% | |
| TAGTGTCCTCGCCAAGAAAA+TGG | - | tig0001526:344299-344318 | Msa1337670:intron | 45.0% | |
| ATTGCGGGTACTTTGTGATG+AGG | - | tig0001526:344327-344346 | Msa1337670:intron | 45.0% | |
| AGAACCGACACCATTCTTCT+TGG | + | tig0001526:344547-344566 | None:intergenic | 45.0% | |
| GGAGGAGAGTGAACGAAATT+TGG | - | tig0001526:344759-344778 | Msa1337670:intron | 45.0% | |
| ! | GATGATTCGCCTGCTTGTTT+TGG | - | tig0001526:344790-344809 | Msa1337670:intron | 45.0% |
| !! | GTGACAAAAAGCGCTAGCAA+CGG | + | tig0001526:345276-345295 | None:intergenic | 45.0% |
| ATTGCGTTGAGAACCTTCTC+CGG | - | tig0001526:345508-345527 | Msa1337670:intron | 45.0% | |
| TAAGAAACTGGAACCGGAGA+AGG | + | tig0001526:345524-345543 | None:intergenic | 45.0% | |
| !!! | TATGATTTTTTTATAATATA+AGG | - | tig0001526:344585-344604 | Msa1337670:intron | 5.0% |
| GACGACGGCTTCATGTAGAT+CGG | + | tig0001526:338295-338314 | None:intergenic | 50.0% | |
| TGCCTCCTTGTGAAGGTTCA+CGG | - | tig0001526:339151-339170 | Msa1337670:intron | 50.0% | |
| TTACCCCGTGAACCTTCACA+AGG | + | tig0001526:339159-339178 | None:intergenic | 50.0% | |
| GTGCTTCCTTCCTTGTACAG+TGG | - | tig0001526:339387-339406 | Msa1337670:intron | 50.0% | |
| AACTCGTAGTTGTGGCCTGT+TGG | - | tig0001526:339682-339701 | Msa1337670:intron | 50.0% | |
| GTTATGCAGGGATCGAACAG+GGG | + | tig0001526:341623-341642 | None:intergenic | 50.0% | |
| GTGTTATGCAGGGATCGAAC+AGG | + | tig0001526:341625-341644 | None:intergenic | 50.0% | |
| GATAATTGTGGTCGGCGATG+AGG | + | tig0001526:341898-341917 | None:intergenic | 50.0% | |
| GTTGGAGATACAGTTTCCGG+CGG | + | tig0001526:342032-342051 | None:intergenic | 50.0% | |
| GGAAACTGTATCTTCCGTCC+AGG | - | tig0001526:342068-342087 | Msa1337670:intron | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | + | tig0001526:342105-342124 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | tig0001526:342104-342123 | None:intergenic | 50.0% | |
| GACACGCCTAGCAAGAACAA+AGG | - | tig0001526:342994-343013 | Msa1337670:intron | 50.0% | |
| ! | GTTGGTGCTCCGCATATTTC+CGG | + | tig0001526:343036-343055 | None:intergenic | 50.0% |
| TACGGGACGTTTATGTGGGT+TGG | + | tig0001526:343054-343073 | None:intergenic | 50.0% | |
| ACCCACATAAACGTCCCGTA+AGG | - | tig0001526:343054-343073 | Msa1337670:intron | 50.0% | |
| GCAGAACCAAAATCCAGCAG+GGG | - | tig0001526:343146-343165 | Msa1337670:intron | 50.0% | |
| CAGAACCAAAATCCAGCAGG+GGG | - | tig0001526:343147-343166 | Msa1337670:intron | 50.0% | |
| ! | CTGCCTGTTTTCAGTTGCCA+GGG | + | tig0001526:343182-343201 | None:intergenic | 50.0% |
| ! | TCTGCCTGTTTTCAGTTGCC+AGG | + | tig0001526:343183-343202 | None:intergenic | 50.0% |
| TGCTGTTCTGTAGCAGGATC+TGG | + | tig0001526:343229-343248 | None:intergenic | 50.0% | |
| AATGGCTGCTGTTCTGTAGC+AGG | + | tig0001526:343235-343254 | None:intergenic | 50.0% | |
| GCTTGGTTATACAAGGCCAG+TGG | + | tig0001526:343978-343997 | None:intergenic | 50.0% | |
| CACACTCTGCCTCCTTGTGA+AGG | - | tig0001526:339144-339163 | Msa1337670:intron | 55.0% | |
| GCCTCCTTGTGAAGGTTCAC+GGG | - | tig0001526:339152-339171 | Msa1337670:intron | 55.0% | |
| CCTCCTTGTGAAGGTTCACG+GGG | - | tig0001526:339153-339172 | Msa1337670:intron | 55.0% | |
| GTAAACTCATCGACGTCCGC+CGG | - | tig0001526:342013-342032 | Msa1337670:intron | 55.0% | |
| ACAGTTTCCAGCGAACGACG+AGG | + | tig0001526:342057-342076 | None:intergenic | 55.0% | |
| GAGAGAGAGAGAGAGAGGGA+GGG | + | tig0001526:342101-342120 | None:intergenic | 55.0% | |
| AGAGAGAGAGAGAGAGAGGG+AGG | + | tig0001526:342102-342121 | None:intergenic | 55.0% | |
| TTGCTAGGCGTGTCTTACGC+CGG | + | tig0001526:342988-343007 | None:intergenic | 55.0% | |
| ! | TACTGCCCCCTGCTGGATTT+TGG | + | tig0001526:343155-343174 | None:intergenic | 55.0% |
| AAAATCCAGCAGGGGGCAGT+AGG | - | tig0001526:343154-343173 | Msa1337670:intron | 55.0% | |
| GCACCCTGGCAACTGAAAAC+AGG | - | tig0001526:343176-343195 | Msa1337670:intron | 55.0% | |
| TAGGACCATGGTTGAGGTCG+TGG | - | tig0001526:343455-343474 | Msa1337670:intron | 55.0% | |
| AGGCTGCCTGATTCCAACCT+TGG | - | tig0001526:343919-343938 | Msa1337670:intron | 55.0% | |
| AGCGCTGTTGTAAATGGCGC+TGG | + | tig0001526:345366-345385 | None:intergenic | 55.0% | |
| CCCCGTGAACCTTCACAAGG+AGG | + | tig0001526:339156-339175 | None:intergenic | 60.0% | |
| GTTTCCAGCGAACGACGAGG+AGG | + | tig0001526:342054-342073 | None:intergenic | 60.0% | |
| GAGAGAGAGAGAGGGAGGGA+GGG | + | tig0001526:342097-342116 | None:intergenic | 60.0% | |
| AGAGAGAGAGAGAGGGAGGG+AGG | + | tig0001526:342098-342117 | None:intergenic | 60.0% | |
| CCAGCGAACGACGAGGAGGT+TGG | + | tig0001526:342050-342069 | None:intergenic | 65.0% | |
| CCAACCTCCTCGTCGTTCGC+TGG | - | tig0001526:342047-342066 | Msa1337670:intron | 65.0% | |
| GGGAGGGAGGGATACCTGGA+CGG | + | tig0001526:342085-342104 | None:intergenic | 65.0% | |
| GAGAGGGAGGGAGGGATACC+TGG | + | tig0001526:342089-342108 | None:intergenic | 65.0% | |
| GGGTGCCTACTGCCCCCTGC+TGG | + | tig0001526:343162-343181 | None:intergenic | 75.0% | |
| GCAGGGGGCAGTAGGCACCC+TGG | - | tig0001526:343162-343181 | Msa1337670:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0001526 | gene | 338141 | 345731 | 338141 | ID=Msa1337670;Name=Msa1337670 |
| tig0001526 | mRNA | 338141 | 345731 | 338141 | ID=Msa1337670-mRNA-1;Parent=Msa1337670;Name=Msa1337670-mRNA-1;_AED=0.35;_eAED=0.36;_QI=0|0.6|0.5|1|0.4|0.5|6|394|84 |
| tig0001526 | exon | 338141 | 338429 | 338141 | ID=Msa1337670-mRNA-1:exon:1305;Parent=Msa1337670-mRNA-1 |
| tig0001526 | exon | 342684 | 342802 | 342684 | ID=Msa1337670-mRNA-1:exon:1304;Parent=Msa1337670-mRNA-1 |
| tig0001526 | exon | 343270 | 343370 | 343270 | ID=Msa1337670-mRNA-1:exon:1303;Parent=Msa1337670-mRNA-1 |
| tig0001526 | exon | 343470 | 343546 | 343470 | ID=Msa1337670-mRNA-1:exon:1302;Parent=Msa1337670-mRNA-1 |
| tig0001526 | exon | 344698 | 344755 | 344698 | ID=Msa1337670-mRNA-1:exon:1301;Parent=Msa1337670-mRNA-1 |
| tig0001526 | exon | 345727 | 345731 | 345727 | ID=Msa1337670-mRNA-1:exon:1300;Parent=Msa1337670-mRNA-1 |
| tig0001526 | CDS | 345727 | 345731 | 345727 | ID=Msa1337670-mRNA-1:cds;Parent=Msa1337670-mRNA-1 |
| tig0001526 | CDS | 344698 | 344755 | 344698 | ID=Msa1337670-mRNA-1:cds;Parent=Msa1337670-mRNA-1 |
| tig0001526 | CDS | 343470 | 343546 | 343470 | ID=Msa1337670-mRNA-1:cds;Parent=Msa1337670-mRNA-1 |
| tig0001526 | CDS | 343270 | 343370 | 343270 | ID=Msa1337670-mRNA-1:cds;Parent=Msa1337670-mRNA-1 |
| tig0001526 | CDS | 342789 | 342802 | 342789 | ID=Msa1337670-mRNA-1:cds;Parent=Msa1337670-mRNA-1 |
| tig0001526 | three_prime_UTR | 342684 | 342788 | 342684 | ID=Msa1337670-mRNA-1:three_prime_utr;Parent=Msa1337670-mRNA-1 |
| tig0001526 | three_prime_UTR | 338141 | 338429 | 338141 | ID=Msa1337670-mRNA-1:three_prime_utr;Parent=Msa1337670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
