AlfalfaGEDB | Msa0792540

M. sativa cultivar zhongmu-4 / Msa0792540

KEGG: K14787
GO: GO:0000028 GO:0000447 GO:0000460 GO:0000462 GO:0000466 GO:0000469 GO:0000472 GO:0000478 GO:0000479 GO:0000480 GO:0000966 GO:0000967 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0030490 GO:0030684 GO:0030686 GO:0031974 GO:0031981 GO:0032991 GO:0034462 GO:0034470 GO:0034471 GO:0034622 GO:0034641 GO:0034660 GO:0042134 GO:0042254 GO:0042255 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:1901360 GO:1901363 GO:1990904
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0792540	XP_024627093.2	91.371	846	68	1	1	846	1	841	0.0	1491

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0792540	sp\|Q6CEW9\|MRD1_YARLI	33.295	880	464	25	1	826	1	811	1.03e-130	414

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0792540	A0A396HB47	91.144	813	67	1	34	846	1	808	0.0	1424

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa0792540	0.819811	9.547214e-53	-8.615850e-47
Msa0006110	Msa0792540	0.828551	8.440809e-55	-8.615850e-47
Msa0017070	Msa0792540	0.806633	7.481224e-50	-8.615850e-47
Msa0029240	Msa0792540	0.808050	3.746686e-50	-8.615850e-47
Msa0031340	Msa0792540	0.805088	1.580548e-49	-8.615850e-47
Msa0032430	Msa0792540	0.802670	5.026042e-49	-8.615850e-47
Msa0036140	Msa0792540	0.807166	5.772668e-50	-8.615850e-47
Msa0043980	Msa0792540	0.806365	8.523428e-50	-8.615850e-47
Msa0044260	Msa0792540	0.802691	4.975193e-49	-8.615850e-47
Msa0045790	Msa0792540	0.818660	1.745960e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0792540	MtrunA17_Chr7g0260761	91.144	813	67	1	34	846	1	808	0.0	1424
Msa0792540	MtrunA17_Chr7g0259641	85.258	814	114	3	34	846	1	809	0.0	1359
Msa0792540	MtrunA17_Chr7g0259671	78.236	533	113	2	32	564	3	532	0.0	751
Msa0792540	MtrunA17_Chr2g0285271	65.636	291	72	2	76	366	10	272	2.45e-106	328
Msa0792540	MtrunA17_Chr2g0285261	47.343	207	64	3	396	602	4	165	8.21e-45	159
Msa0792540	MtrunA17_Chr7g0259651	83.333	78	13	0	756	833	1	78	1.22e-37	135
Msa0792540	MtrunA17_Chr7g0259661	90.000	70	6	1	647	715	1	70	5.98e-34	124
Msa0792540	MtrunA17_Chr1g0201151	32.461	191	111	8	625	809	120	298	1.27e-12	71.6
Msa0792540	MtrunA17_Chr1g0179701	31.088	193	111	7	614	799	141	318	2.87e-12	70.5
Msa0792540	MtrunA17_Chr7g0265341	23.267	404	231	16	417	801	88	431	3.32e-12	70.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0792540	AT4G19610.1	51.874	827	356	12	1	816	1	796	0.0	775
Msa0792540	AT5G08695.1	43.974	755	322	19	1	750	3	661	3.92e-176	525
Msa0792540	AT5G05720.1	28.942	539	276	19	312	835	4	450	2.91e-35	140
Msa0792540	AT5G05720.1	56.410	78	33	1	1	77	1	78	4.27e-18	88.6
Msa0792540	AT1G71770.1	25.000	408	250	15	312	709	61	422	1.96e-14	77.8
Msa0792540	AT1G71770.1	30.256	195	124	8	609	799	130	316	4.47e-11	67.0
Msa0792540	AT1G71770.2	25.000	408	250	15	312	709	61	422	1.96e-14	77.8
Msa0792540	AT1G71770.2	30.256	195	124	8	609	799	130	316	4.47e-11	67.0
Msa0792540	AT4G34110.1	29.717	212	110	8	625	816	217	409	7.24e-14	75.9
Msa0792540	AT4G34110.1	23.371	445	280	18	312	747	38	430	4.50e-12	70.1

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Find 158 sgRNAs with CRISPR-Local

Find 828 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTGAGCTTAAGCATGA+TGG	0.535732	5_3:+3781593	Msa0792540:CDS
AAAGCAGCTTTAGCTGCTGC+TGG	0.471945	5_3:-3788109	None:intergenic
AAATCTCAAACAACGAAGAG+AGG	0.600079	5_3:+3783965	Msa0792540:CDS
AAATTTCAAGACAACAGATG+AGG	0.617949	5_3:+3790139	Msa0792540:CDS
AAATTTGCCATATCAGGCTA+CGG	0.580090	5_3:+3785744	Msa0792540:CDS
AACAACGAAGAGAGGAAGAA+AGG	0.496906	5_3:+3783973	Msa0792540:CDS
AACAATCATGCTAGAGCTAA+AGG	0.459016	5_3:+3781338	Msa0792540:CDS
AACTCTTGAGCACCACTTCT+TGG	0.320155	5_3:-3781803	None:intergenic
AAGCAGGTGGCTCGAAAACT+TGG	0.428560	5_3:+3781242	Msa0792540:intron
AAGGAAATATGAAATTTAAA+AGG	0.260205	5_3:+3791238	Msa0792540:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCCCTAAATACTATACTG+AGG	+	chr5_3:3780779-3780798	Msa0792540:CDS	30.0%
GATCCTCAGTATAGTATTTA+GGG	-	chr5_3:3780785-3780804	None:intergenic	30.0%
TGATCCTCAGTATAGTATTT+AGG	-	chr5_3:3780786-3780805	None:intergenic	30.0%
GGAAAGAAACATGTAATACT+TGG	-	chr5_3:3780865-3780884	None:intergenic	30.0%
ATTGTAAATAAGTGTCCATG+AGG	-	chr5_3:3780901-3780920	None:intergenic	30.0%
CACACAAAAAATTACTTGTG+AGG	+	chr5_3:3781051-3781070	Msa0792540:CDS	30.0%
TTTCAAGAGCAAATTGACAA+CGG	+	chr5_3:3781637-3781656	Msa0792540:CDS	30.0%
ATTCACTTGAGACTTATCAT+TGG	-	chr5_3:3781870-3781889	None:intergenic	30.0%
TCAAATCCAGAACATAAGAA+AGG	+	chr5_3:3781914-3781933	Msa0792540:CDS	30.0%
TCTTGTGGAAAAACAATAAC+AGG	-	chr5_3:3782046-3782065	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	3780384	3791482	3780384	ID=Msa0792540;Name=Msa0792540
chr5_3	mRNA	3780384	3791482	3780384	ID=Msa0792540-mRNA-1;Parent=Msa0792540;Name=Msa0792540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=160\|1\|1\|1\|0.86\|0.87\|16\|213\|846
chr5_3	exon	3780384	3780472	3780384	ID=Msa0792540-mRNA-1:exon:1654;Parent=Msa0792540-mRNA-1
chr5_3	exon	3780599	3780671	3780599	ID=Msa0792540-mRNA-1:exon:1655;Parent=Msa0792540-mRNA-1
chr5_3	exon	3780758	3780865	3780758	ID=Msa0792540-mRNA-1:exon:1656;Parent=Msa0792540-mRNA-1
chr5_3	exon	3780958	3781072	3780958	ID=Msa0792540-mRNA-1:exon:1657;Parent=Msa0792540-mRNA-1
chr5_3	exon	3781248	3781987	3781248	ID=Msa0792540-mRNA-1:exon:1658;Parent=Msa0792540-mRNA-1
chr5_3	exon	3782130	3782261	3782130	ID=Msa0792540-mRNA-1:exon:1659;Parent=Msa0792540-mRNA-1
chr5_3	exon	3783488	3783577	3783488	ID=Msa0792540-mRNA-1:exon:1660;Parent=Msa0792540-mRNA-1
chr5_3	exon	3783944	3784058	3783944	ID=Msa0792540-mRNA-1:exon:1661;Parent=Msa0792540-mRNA-1
chr5_3	exon	3785523	3785846	3785523	ID=Msa0792540-mRNA-1:exon:1662;Parent=Msa0792540-mRNA-1
chr5_3	exon	3788094	3788158	3788094	ID=Msa0792540-mRNA-1:exon:1663;Parent=Msa0792540-mRNA-1
chr5_3	exon	3788929	3789100	3788929	ID=Msa0792540-mRNA-1:exon:1664;Parent=Msa0792540-mRNA-1
chr5_3	exon	3790113	3790217	3790113	ID=Msa0792540-mRNA-1:exon:1665;Parent=Msa0792540-mRNA-1
chr5_3	exon	3790306	3790407	3790306	ID=Msa0792540-mRNA-1:exon:1666;Parent=Msa0792540-mRNA-1
chr5_3	exon	3790523	3790696	3790523	ID=Msa0792540-mRNA-1:exon:1667;Parent=Msa0792540-mRNA-1
chr5_3	exon	3790838	3790969	3790838	ID=Msa0792540-mRNA-1:exon:1668;Parent=Msa0792540-mRNA-1
chr5_3	exon	3791105	3791482	3791105	ID=Msa0792540-mRNA-1:exon:1669;Parent=Msa0792540-mRNA-1
chr5_3	five_prime_UTR	3780384	3780472	3780384	ID=Msa0792540-mRNA-1:five_prime_utr;Parent=Msa0792540-mRNA-1
chr5_3	five_prime_UTR	3780599	3780669	3780599	ID=Msa0792540-mRNA-1:five_prime_utr;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3780670	3780671	3780670	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3780758	3780865	3780758	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3780958	3781072	3780958	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3781248	3781987	3781248	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3782130	3782261	3782130	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3783488	3783577	3783488	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3783944	3784058	3783944	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3785523	3785846	3785523	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3788094	3788158	3788094	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3788929	3789100	3788929	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3790113	3790217	3790113	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3790306	3790407	3790306	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3790523	3790696	3790523	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3790838	3790969	3790838	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	CDS	3791105	3791269	3791105	ID=Msa0792540-mRNA-1:cds;Parent=Msa0792540-mRNA-1
chr5_3	three_prime_UTR	3791270	3791482	3791270	ID=Msa0792540-mRNA-1:three_prime_utr;Parent=Msa0792540-mRNA-1

Gene Sequence

>Msa0792540

ATGTCGAGGATATGTGTGAAGAGTATCCCTAAATACTATACTGAGGATCATCTAAGACTAAAATTTTCTAAGATAGGAGAAATAACTGATCTCAAGCTTATGCGTACCAAAACCGGAAAAAGTCGGCAATTTGCTTTTATTGGATTTCGTACCGACCGGGAAGCACAGGAAGCAATTCGACATCTTAATAATTCTTACTTTGACACACAAAAAATTACTTGTGAGGTGGCTCGAAAACTTGGTGATGCAAATCTTCCTCGTCCGCGGAGTCGACATTCAACAAAAAAATACAATAAAGTGATCACCTCACATGTTAACAATCATGCTAGAGCTAAAGGACATGAAGACAATTCTATGGAAATTGATGACCCAAAACTTCAAGATTTTCTTCAGGTCATGCAACCTCGGGCAATGTCTAAGCTGTGGGCAAATGATACTTCAGTTGTATCCAATGATGTTAACAACCAAGCAACATTGAATAAGGAGACCGAAAGTACATCAGTTGCAAACCATCCTATCTTAAGCGACTCACAAGTAGATGAATTACCAAAAAACCCTAAATCCGATAAGAAACGTGAGCTTAAGCATGATGGAGTAATCTCTGATATGGATTATTTCAAGAGCAAATTGACAACGGAGTGGTCTGATTCTGAAAGCAGTGATGATGACAATGGCGATGACAACAGTGATTCGGCGTCTTCTGATGATGATGACAAAGATAAACATAGTCATACTACTGAACATGAAGAAAATCGTGGTAATAACCCTATTGAAAGAACCCCAAGAAGTGGTGCTCAAGAGTTAGATCCAGAAGACCAAGAAAATACTGTTGGAAAGGATGTAGCCAATGATAAGTCTCAAGTGAATGCAATTGAGGAAGAGGGGCGATTATCAAATCCAGAACATAAGAAAGGAGTTTCTGAGCCGTGTCGACTGTTTGTCCGTAATCTGCCATATTCGACCACTGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGCAGTGTCTCACAGGTTCATTTGCTTGTTCACGAGGATACAAAACGATCCAAAGGAATAGCTTATATTCATTTTTCAGTTCCAGAATTTGCAGCCAGGGCGCTAGAAGAGTCGGACAATTCAATCTTCCAGGGGAGATTATTGCATGTTAAGCCAGCTAATTTACCAAGACATTCAAGCAATGAAGAGAACAAGGACCAAGGCTCTAAAAATCTCAAACAACGAAGAGAGGAAGAAAGGAAAGCAGCTGAAGCTAAAGGAGATACCAGAGCATGGAATAGTCTGTACATGTGTCAGGATACAATAAATGAGAACACTGCTCGGAAATATTGTGTTGGTAAAAGTGATTTACTGGGTCCAGAAGCTGATAATGTTGCTGCAAATGTTGCTCTGGGAGAAACTGATGTGATTAAAGAAACAAAAATAGCATTTAAAAAGGCTGGAGTGAACGTGGAGTCTCTGGACGAGCTTGCGAACAGTAAAGTTGATGGCGTGAAAAGAAATAACCATGTACTTTTAGCAAAAAATTTGCCATATCAGGCTACGGAAAATGAACTTGCAGAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCCTCGACAAAAACATTGGCCCTGGTTATTTTTCTGGAACCAGCAGCAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACACGCGTTACAAGGCTGCTCCCTTATACTTGGAGTGGGCTCCTTCCGATGTTCTTGGCCCAAAATCACAATCTAAAAATGATGAGGTGAATAATGGAATTGCTGAAAAGGATTTCAAGCGAGTGATATTAGAGAAAGATGTGGAAAGAATATCAGATGTTGATATTGATCCGGACAGAATAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGGGTTTGAGGGAACATTTCAGTAAACACATGAAAGAGGGACGGATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGATATGGATTTGTTGAGTTTGACTCTGCAGAGACTGCTACAAGTGTTTGCAACGATTTACAGTGGACTGTTTTGGACGGTCATGCTCTTATTTTACAACTCTGTCATGTCAAGAATGATGGTAAAGTACAAAAGAAAGTTGAGAAAGATAAGAGTGCAACTACGTTGCATGTGAAAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAATTATTTAGCCCGTTTGGCCAGATTAAAAGTTTAAGATTACCAATGAAGTTTGGAAATTATAGAGGATATGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTACAGCACTCTCAAGCACCCACTTGTATGGCAGACATCTGGTGATTGAGAGAGCAAAAGAAGGTGAGAGTTTGAACGAACTGCGAGCTAGAACTGCTGCTCAATTTAATGAACATAGTGGATTTCAAGATACTAACTTATCCAAGAAAAGGAAGGCCATCAGTATGTTAGATGAAGGAAATATGAAATTTAAAAGGTTTGATTAG

Protein sequence

>Msa0792540

MSRICVKSIPKYYTEDHLRLKFSKIGEITDLKLMRTKTGKSRQFAFIGFRTDREAQEAIRHLNNSYFDTQKITCEVARKLGDANLPRPRSRHSTKKYNKVITSHVNNHARAKGHEDNSMEIDDPKLQDFLQVMQPRAMSKLWANDTSVVSNDVNNQATLNKETESTSVANHPILSDSQVDELPKNPKSDKKRELKHDGVISDMDYFKSKLTTEWSDSESSDDDNGDDNSDSASSDDDDKDKHSHTTEHEENRGNNPIERTPRSGAQELDPEDQENTVGKDVANDKSQVNAIEEEGRLSNPEHKKGVSEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLLVHEDTKRSKGIAYIHFSVPEFAARALEESDNSIFQGRLLHVKPANLPRHSSNEENKDQGSKNLKQRREEERKAAEAKGDTRAWNSLYMCQDTINENTARKYCVGKSDLLGPEADNVAANVALGETDVIKETKIAFKKAGVNVESLDELANSKVDGVKRNNHVLLAKNLPYQATENELAEMFGKFGSLDKIILPSTKTLALVIFLEPAAAKAAFRGLAYTRYKAAPLYLEWAPSDVLGPKSQSKNDEVNNGIAEKDFKRVILEKDVERISDVDIDPDRIEARSLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKNGKNVSMGYGFVEFDSAETATSVCNDLQWTVLDGHALILQLCHVKNDGKVQKKVEKDKSATTLHVKNVAFEATKKDLRQLFSPFGQIKSLRLPMKFGNYRGYAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLNELRARTAAQFNEHSGFQDTNLSKKRKAISMLDEGNMKFKRFD*