Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0701830 | 0.815456 | 9.160376e-52 | -8.615850e-47 |
| Msa0021510 | Msa0701830 | 0.828729 | 7.646051e-55 | -8.615850e-47 |
| Msa0036140 | Msa0701830 | 0.805908 | 1.063538e-49 | -8.615850e-47 |
| Msa0044260 | Msa0701830 | 0.811720 | 6.078783e-51 | -8.615850e-47 |
| Msa0045790 | Msa0701830 | 0.821378 | 4.169285e-53 | -8.615850e-47 |
| Msa0046160 | Msa0701830 | 0.821326 | 4.285374e-53 | -8.615850e-47 |
| Msa0054480 | Msa0701830 | 0.819093 | 1.391676e-52 | -8.615850e-47 |
| Msa0074240 | Msa0701830 | 0.801768 | 7.706051e-49 | -8.615850e-47 |
| Msa0079380 | Msa0701830 | 0.802136 | 6.473036e-49 | -8.615850e-47 |
| Msa0080090 | Msa0701830 | 0.833323 | 5.696067e-56 | -8.615850e-47 |
| Msa0084380 | Msa0701830 | 0.816843 | 4.486726e-52 | -8.615850e-47 |
| Msa0114060 | Msa0701830 | 0.807990 | 3.859195e-50 | -8.615850e-47 |
| Msa0607310 | Msa0701830 | 0.808725 | 2.689622e-50 | -8.615850e-47 |
| Msa0622650 | Msa0701830 | 0.800984 | 1.115360e-48 | -8.615850e-47 |
| Msa0625190 | Msa0701830 | 0.801716 | 7.897146e-49 | -8.615850e-47 |
| Msa0625720 | Msa0701830 | 0.828066 | 1.105269e-54 | -8.615850e-47 |
| Msa0629450 | Msa0701830 | 0.803678 | 3.108757e-49 | -8.615850e-47 |
| Msa0633700 | Msa0701830 | 0.808021 | 3.800747e-50 | -8.615850e-47 |
| Msa0661650 | Msa0701830 | 0.836147 | 1.109411e-56 | -8.615850e-47 |
| Msa0663390 | Msa0701830 | 0.814616 | 1.406954e-51 | -8.615850e-47 |
| Msa0663810 | Msa0701830 | 0.803682 | 3.102894e-49 | -8.615850e-47 |
| Msa0664600 | Msa0701830 | 0.800022 | 1.751661e-48 | -8.615850e-47 |
| Msa0672690 | Msa0701830 | 0.806371 | 8.498670e-50 | -8.615850e-47 |
| Msa0679750 | Msa0701830 | 0.819601 | 1.066084e-52 | -8.615850e-47 |
| Msa0680660 | Msa0701830 | 0.820285 | 7.435721e-53 | -8.615850e-47 |
| Msa0681250 | Msa0701830 | 0.849661 | 2.801298e-60 | -8.615850e-47 |
| Msa0681270 | Msa0701830 | 0.845622 | 3.620691e-59 | -8.615850e-47 |
| Msa0685900 | Msa0701830 | 0.806474 | 8.082621e-50 | -8.615850e-47 |
| Msa0693010 | Msa0701830 | -0.804442 | 2.156200e-49 | -8.615850e-47 |
| Msa0701830 | Msa0701900 | 0.804357 | 2.245392e-49 | -8.615850e-47 |
| Msa0701830 | Msa0703360 | 0.990177 | 2.051427e-181 | -8.615850e-47 |
| Msa0701830 | Msa0707250 | 0.807980 | 3.877831e-50 | -8.615850e-47 |
| Msa0701830 | Msa0709010 | 0.927404 | 1.232460e-91 | -8.615850e-47 |
| Msa0701830 | Msa0717890 | 0.821122 | 4.776151e-53 | -8.615850e-47 |
| Msa0701830 | Msa0724210 | 0.815349 | 9.673728e-52 | -8.615850e-47 |
| Msa0701830 | Msa0731940 | 0.841593 | 4.325202e-58 | -8.615850e-47 |
| Msa0701830 | Msa0753720 | 0.816126 | 6.495381e-52 | -8.615850e-47 |
| Msa0701830 | Msa0760130 | 0.808580 | 2.888293e-50 | -8.615850e-47 |
| Msa0701830 | Msa0766630 | 0.814687 | 1.356998e-51 | -8.615850e-47 |
| Msa0701830 | Msa0774160 | 0.939513 | 1.119866e-99 | -8.615850e-47 |
| Msa0701830 | Msa0779320 | 0.818980 | 1.476706e-52 | -8.615850e-47 |
| Msa0701830 | Msa0792540 | 0.806411 | 8.333851e-50 | -8.615850e-47 |
| Msa0701830 | Msa0817460 | 0.821667 | 3.574171e-53 | -8.615850e-47 |
| Msa0701830 | Msa0831110 | 0.814877 | 1.231572e-51 | -8.615850e-47 |
| Msa0701830 | Msa0832340 | 0.800627 | 1.319177e-48 | -8.615850e-47 |
| Msa0701830 | Msa0875290 | 0.803457 | 3.453913e-49 | -8.615850e-47 |
| Msa0701830 | Msa0880950 | 0.825930 | 3.582798e-54 | -8.615850e-47 |
| Msa0701830 | Msa0897330 | 0.818020 | 2.437570e-52 | -8.615850e-47 |
| Msa0701830 | Msa0898750 | 0.810625 | 1.050289e-50 | -8.615850e-47 |
| Msa0701830 | Msa0899980 | 0.823971 | 1.039177e-53 | -8.615850e-47 |
| Msa0701830 | Msa0900620 | 0.815224 | 1.031583e-51 | -8.615850e-47 |
| Msa0701830 | Msa0927310 | 0.811400 | 7.135399e-51 | -8.615850e-47 |
| Msa0701830 | Msa0928130 | 0.811150 | 8.084119e-51 | -8.615850e-47 |
| Msa0701830 | Msa0931520 | 0.802328 | 5.911864e-49 | -8.615850e-47 |
| Msa0701830 | Msa0935670 | 0.817146 | 3.836049e-52 | -8.615850e-47 |
| Msa0701830 | Msa0935910 | 0.807390 | 5.175219e-50 | -8.615850e-47 |
| Msa0701830 | Msa0941190 | 0.805313 | 1.417762e-49 | -8.615850e-47 |
| Msa0701830 | Msa0964310 | 0.806684 | 7.297369e-50 | -8.615850e-47 |
| Msa0701830 | Msa0965360 | 0.834676 | 2.611497e-56 | -8.615850e-47 |
| Msa0701830 | Msa0967870 | 0.801059 | 1.076283e-48 | -8.615850e-47 |
| Msa0701830 | Msa0974070 | 0.817825 | 2.697230e-52 | -8.615850e-47 |
| Msa0701830 | Msa0989360 | 0.827425 | 1.575328e-54 | -8.615850e-47 |
| Msa0701830 | Msa0990680 | 0.802737 | 4.867439e-49 | -8.615850e-47 |
| Msa0701830 | Msa0999290 | 0.808575 | 2.895985e-50 | -8.615850e-47 |
| Msa0701830 | Msa0999870 | 0.825180 | 5.395960e-54 | -8.615850e-47 |
| Msa0701830 | Msa1001180 | 0.807044 | 6.126835e-50 | -8.615850e-47 |
| Msa0701830 | Msa1002000 | 0.807284 | 5.449081e-50 | -8.615850e-47 |
| Msa0701830 | Msa1004800 | 0.806275 | 8.903136e-50 | -8.615850e-47 |
| Msa0701830 | Msa1004840 | 0.834560 | 2.792898e-56 | -8.615850e-47 |
| Msa0701830 | Msa1004970 | 0.814774 | 1.298301e-51 | -8.615850e-47 |
| Msa0701830 | Msa1014540 | 0.815043 | 1.131401e-51 | -8.615850e-47 |
| Msa0701830 | Msa1016320 | 0.811773 | 5.919198e-51 | -8.615850e-47 |
| Msa0701830 | Msa1023950 | 0.813823 | 2.106074e-51 | -8.615850e-47 |
| Msa0701830 | Msa1026740 | 0.805314 | 1.417179e-49 | -8.615850e-47 |
| Msa0701830 | Msa1035480 | 0.838392 | 2.956183e-57 | -8.615850e-47 |
| Msa0701830 | Msa1035540 | 0.805085 | 1.582751e-49 | -8.615850e-47 |
| Msa0701830 | Msa1036610 | 0.811816 | 5.793469e-51 | -8.615850e-47 |
| Msa0701830 | Msa1037780 | 0.833230 | 6.009975e-56 | -8.615850e-47 |
| Msa0701830 | Msa1047080 | 0.805648 | 1.205898e-49 | -8.615850e-47 |
| Msa0701830 | Msa1050340 | 0.807401 | 5.147430e-50 | -8.615850e-47 |
| Msa0701830 | Msa1066670 | 0.826257 | 2.996294e-54 | -8.615850e-47 |
| Msa0701830 | Msa1075540 | 0.833457 | 5.275687e-56 | -8.615850e-47 |
| Msa0701830 | Msa1075650 | 0.829876 | 4.026730e-55 | -8.615850e-47 |
| Msa0701830 | Msa1082500 | 0.804049 | 2.603051e-49 | -8.615850e-47 |
| Msa0701830 | Msa1083840 | 0.842442 | 2.578996e-58 | -8.615850e-47 |
| Msa0701830 | Msa1098400 | 0.801426 | 9.054534e-49 | -8.615850e-47 |
| Msa0701830 | Msa1098420 | 0.801986 | 6.950288e-49 | -8.615850e-47 |
| Msa0701830 | Msa1101090 | 0.823256 | 1.527485e-53 | -8.615850e-47 |
| Msa0701830 | Msa1113170 | 0.815169 | 1.060794e-51 | -8.615850e-47 |
| Msa0701830 | Msa1142020 | 0.810133 | 1.341041e-50 | -8.615850e-47 |
| Msa0701830 | Msa1147740 | 0.802264 | 6.091202e-49 | -8.615850e-47 |
| Msa0701830 | Msa1162780 | 0.826458 | 2.682512e-54 | -8.615850e-47 |
| Msa0701830 | Msa1163090 | 0.830644 | 2.614655e-55 | -8.615850e-47 |
| Msa0701830 | Msa1171710 | 0.806279 | 8.886816e-50 | -8.615850e-47 |
| Msa0701830 | Msa1181910 | 0.817871 | 2.633012e-52 | -8.615850e-47 |
| Msa0701830 | Msa1186020 | 0.804891 | 1.737142e-49 | -8.615850e-47 |
| Msa0701830 | Msa1199570 | 0.808612 | 2.842621e-50 | -8.615850e-47 |
| Msa0701830 | Msa1207220 | 0.809700 | 1.662538e-50 | -8.615850e-47 |
| Msa0701830 | Msa1225130 | 0.800334 | 1.513039e-48 | -8.615850e-47 |
| Msa0701830 | Msa1232700 | 0.812770 | 3.586067e-51 | -8.615850e-47 |
| Msa0701830 | Msa1239920 | 0.806696 | 7.256420e-50 | -8.615850e-47 |
| Msa0701830 | Msa1246360 | 0.803442 | 3.479260e-49 | -8.615850e-47 |
| Msa0701830 | Msa1284680 | 0.816230 | 6.154124e-52 | -8.615850e-47 |
| Msa0701830 | Msa1297230 | 0.813068 | 3.086764e-51 | -8.615850e-47 |
| Msa0701830 | Msa1297290 | 0.800777 | 1.229254e-48 | -8.615850e-47 |
| Msa0701830 | Msa1307560 | 0.814374 | 1.591579e-51 | -8.615850e-47 |
| Msa0701830 | Msa1308870 | 0.821625 | 3.655868e-53 | -8.615850e-47 |
| Msa0701830 | Msa1309030 | 0.800352 | 1.500577e-48 | -8.615850e-47 |
| Msa0701830 | Msa1313280 | 0.863641 | 2.153815e-64 | -8.615850e-47 |
| Msa0701830 | Msa1320410 | 0.809129 | 2.203945e-50 | -8.615850e-47 |
| Msa0701830 | Msa1328710 | 0.809273 | 2.052788e-50 | -8.615850e-47 |
| Msa0701830 | Msa1331000 | 0.823996 | 1.025076e-53 | -8.615850e-47 |
| Msa0701830 | Msa1337670 | 0.813194 | 2.895625e-51 | -8.615850e-47 |
| Msa0701830 | Msa1341520 | 0.805716 | 1.166856e-49 | -8.615850e-47 |
| Msa0701830 | Msa1372980 | 0.807424 | 5.088327e-50 | -8.615850e-47 |
| Msa0701830 | Msa1373010 | 0.817247 | 3.641625e-52 | -8.615850e-47 |
| Msa0701830 | Msa1373030 | 0.823725 | 1.186390e-53 | -8.615850e-47 |
| Msa0701830 | Msa1388930 | 0.802042 | 6.769445e-49 | -8.615850e-47 |
| Msa0701830 | Msa1388970 | 0.817834 | 2.684369e-52 | -8.615850e-47 |
| Msa0701830 | Msa1392240 | 0.814050 | 1.876930e-51 | -8.615850e-47 |
| Msa0701830 | Msa1394380 | 0.820194 | 7.799979e-53 | -8.615850e-47 |
| Msa0701830 | Msa1400870 | -0.803922 | 2.765663e-49 | -8.615850e-47 |
| Msa0701830 | Msa1405030 | 0.818941 | 1.507409e-52 | -8.615850e-47 |
| Msa0701830 | Msa1409700 | 0.823467 | 1.363887e-53 | -8.615850e-47 |
| Msa0701830 | Msa1413610 | 0.810432 | 1.156275e-50 | -8.615850e-47 |
| Msa0701830 | Msa1425260 | 0.802913 | 4.477720e-49 | -8.615850e-47 |
| Msa0701830 | Msa1425880 | 0.806028 | 1.003610e-49 | -8.615850e-47 |
| Msa0701830 | Msa1433810 | 0.814104 | 1.826365e-51 | -8.615850e-47 |
| Msa0701830 | Msa1436480 | 0.825053 | 5.781694e-54 | -8.615850e-47 |
| Msa0701830 | Msa1440560 | 0.833335 | 5.657742e-56 | -8.615850e-47 |
| Msa0701830 | Msa1440720 | 0.800813 | 1.208310e-48 | -8.615850e-47 |
| Msa0701830 | Msa1448560 | 0.813444 | 2.552278e-51 | -8.615850e-47 |
| Msa0701830 | Msa1453320 | 0.808981 | 2.371404e-50 | -8.615850e-47 |
| Msa0701830 | Msa1454620 | 0.807542 | 4.804126e-50 | -8.615850e-47 |
| Msa0701830 | Msa1463900 | 0.846172 | 2.567039e-59 | -8.615850e-47 |
| Msa0701830 | Msa1464810 | 0.806696 | 7.256382e-50 | -8.615850e-47 |
| Msa0701830 | Msa1466540 | 0.808286 | 3.337156e-50 | -8.615850e-47 |
| Msa0143560 | Msa0701830 | 0.802181 | 6.336179e-49 | -8.615850e-47 |
| Msa0160130 | Msa0701830 | 0.801045 | 1.083381e-48 | -8.615850e-47 |
| Msa0198340 | Msa0701830 | 0.812240 | 4.683163e-51 | -8.615850e-47 |
| Msa0211150 | Msa0701830 | 0.816731 | 4.755367e-52 | -8.615850e-47 |
| Msa0212990 | Msa0701830 | 0.834457 | 2.965003e-56 | -8.615850e-47 |
| Msa0216910 | Msa0701830 | 0.809105 | 2.230284e-50 | -8.615850e-47 |
| Msa0218810 | Msa0701830 | 0.801842 | 7.440049e-49 | -8.615850e-47 |
| Msa0219590 | Msa0701830 | 0.811014 | 8.651526e-51 | -8.615850e-47 |
| Msa0225100 | Msa0701830 | 0.807003 | 6.250052e-50 | -8.615850e-47 |
| Msa0225220 | Msa0701830 | 0.825064 | 5.746124e-54 | -8.615850e-47 |
| Msa0231060 | Msa0701830 | 0.805206 | 1.492890e-49 | -8.615850e-47 |
| Msa0367870 | Msa0701830 | 0.822342 | 2.493473e-53 | -8.615850e-47 |
| Msa0376350 | Msa0701830 | 0.800125 | 1.668913e-48 | -8.615850e-47 |
| Msa0386090 | Msa0701830 | 0.821424 | 4.068479e-53 | -8.615850e-47 |
| Msa0405130 | Msa0701830 | 0.810108 | 1.358199e-50 | -8.615850e-47 |
| Msa0411390 | Msa0701830 | 0.808095 | 3.664659e-50 | -8.615850e-47 |
| Msa0422260 | Msa0701830 | 0.801818 | 7.524142e-49 | -8.615850e-47 |
| Msa0424790 | Msa0701830 | 0.801105 | 1.053596e-48 | -8.615850e-47 |
| Msa0425170 | Msa0701830 | 0.817038 | 4.056646e-52 | -8.615850e-47 |
| Msa0430420 | Msa0701830 | 0.807263 | 5.504249e-50 | -8.615850e-47 |
| Msa0440400 | Msa0701830 | 0.836384 | 9.656193e-57 | -8.615850e-47 |
| Msa0453640 | Msa0701830 | 0.802213 | 6.242044e-49 | -8.615850e-47 |
| Msa0455760 | Msa0701830 | 0.806709 | 7.212028e-50 | -8.615850e-47 |
| Msa0464120 | Msa0701830 | 0.808414 | 3.133072e-50 | -8.615850e-47 |
| Msa0464680 | Msa0701830 | 0.808973 | 2.380262e-50 | -8.615850e-47 |
| Msa0481530 | Msa0701830 | 0.803311 | 3.703824e-49 | -8.615850e-47 |
| Msa0260780 | Msa0701830 | 0.803572 | 3.270126e-49 | -8.615850e-47 |
| Msa0267370 | Msa0701830 | 0.822111 | 2.820570e-53 | -8.615850e-47 |
| Msa0280090 | Msa0701830 | 0.804324 | 2.281068e-49 | -8.615850e-47 |
| Msa0285450 | Msa0701830 | 0.800981 | 1.116685e-48 | -8.615850e-47 |
| Msa0287740 | Msa0701830 | 0.802338 | 5.883361e-49 | -8.615850e-47 |
| Msa0296480 | Msa0701830 | 0.808862 | 2.513989e-50 | -8.615850e-47 |
| Msa0309770 | Msa0701830 | 0.807018 | 6.205246e-50 | -8.615850e-47 |
| Msa0325830 | Msa0701830 | 0.821324 | 4.289020e-53 | -8.615850e-47 |
| Msa0326940 | Msa0701830 | 0.990815 | 1.843680e-184 | -8.615850e-47 |
| Msa0330340 | Msa0701830 | 0.829841 | 4.107262e-55 | -8.615850e-47 |
| Msa0342010 | Msa0701830 | 0.811140 | 8.123989e-51 | -8.615850e-47 |
| Msa0343280 | Msa0701830 | 0.802479 | 5.502460e-49 | -8.615850e-47 |
| Msa0358890 | Msa0701830 | 0.810928 | 9.029211e-51 | -8.615850e-47 |
| Msa0363790 | Msa0701830 | 0.810608 | 1.059095e-50 | -8.615850e-47 |
| Msa0516170 | Msa0701830 | 0.800528 | 1.381336e-48 | -8.615850e-47 |
| Msa0518380 | Msa0701830 | 0.810491 | 1.122706e-50 | -8.615850e-47 |
| Msa0529890 | Msa0701830 | 0.828534 | 8.524473e-55 | -8.615850e-47 |
| Msa0531180 | Msa0701830 | 0.844417 | 7.660436e-59 | -8.615850e-47 |
| Msa0532350 | Msa0701830 | 0.807953 | 3.929002e-50 | -8.615850e-47 |
| Msa0532990 | Msa0701830 | 0.801745 | 7.788751e-49 | -8.615850e-47 |
| Msa0534910 | Msa0701830 | 0.813302 | 2.742394e-51 | -8.615850e-47 |
| Msa0545210 | Msa0701830 | 0.806779 | 6.968550e-50 | -8.615850e-47 |
| Msa0553240 | Msa0701830 | 0.818329 | 2.075131e-52 | -8.615850e-47 |
| Msa0569200 | Msa0701830 | 0.810106 | 1.359400e-50 | -8.615850e-47 |
| Msa0571010 | Msa0701830 | 0.809708 | 1.655625e-50 | -8.615850e-47 |
| Msa0571130 | Msa0701830 | 0.801042 | 1.085331e-48 | -8.615850e-47 |
| Msa0571630 | Msa0701830 | 0.806116 | 9.615999e-50 | -8.615850e-47 |
| Msa0574390 | Msa0701830 | 0.808261 | 3.378848e-50 | -8.615850e-47 |
| Msa0585560 | Msa0701830 | 0.822717 | 2.040652e-53 | -8.615850e-47 |
| Msa0600710 | Msa0701830 | 0.803977 | 2.694616e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCAGGCGACAGTTTA+AGG | 0.122983 | 4_4:+73288076 | None:intergenic |
| TAATTAATGTATGTGACTTT+TGG | 0.258825 | 4_4:-73287121 | Msa0701830:three_prime_UTR |
| CATTGCTGTAAAACGTGTTT+TGG | 0.309510 | 4_4:+73287206 | None:intergenic |
| TTGAAATTTGAAGAAATAGA+AGG | 0.329500 | 4_4:+73288371 | None:intergenic |
| TAGAAATAGAAGGTAAATGA+TGG | 0.424500 | 4_4:+73288326 | None:intergenic |
| AGAAATTACTCGTCTTCATC+AGG | 0.431687 | 4_4:-73288153 | Msa0701830:five_prime_UTR |
| TTGATTGTTGTTATTGCTGC+AGG | 0.431879 | 4_4:-73288187 | Msa0701830:five_prime_UTR |
| AAGTTTGAGTAATTTAAAGA+AGG | 0.477272 | 4_4:-73287183 | Msa0701830:three_prime_UTR |
| TTGTAGAAAGAATGTAAGAG+AGG | 0.519392 | 4_4:+73288516 | None:intergenic |
| TAGTAATATAGAAGATGAGA+AGG | 0.519700 | 4_4:+73288273 | None:intergenic |
| TGTAGAAAGAATGTAAGAGA+GGG | 0.528156 | 4_4:+73288517 | None:intergenic |
| ATCTTATTTGAAAGATTGAA+AGG | 0.529072 | 4_4:-73287335 | Msa0701830:intron |
| AGGCAATCAATACAACTTAG+TGG | 0.556871 | 4_4:+73287071 | None:intergenic |
| TGAAGAGTGTGTGGGAGAGA+AGG | 0.573340 | 4_4:-73288046 | Msa0701830:intron |
| TTGCCTCAATTATCACGTGA+AGG | 0.577241 | 4_4:-73287054 | Msa0701830:three_prime_UTR |
| CAACCTTCACGTGATAATTG+AGG | 0.587359 | 4_4:+73287051 | None:intergenic |
| GAATACAAACAATTGCAGAA+AGG | 0.599398 | 4_4:-73287296 | Msa0701830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATTCAAACATTTTTTTA+AGG | + | chr4_4:73287672-73287691 | None:intergenic | 15.0% |
| !! | AAATAAGATAAATGAGATAA+GGG | + | chr4_4:73288302-73288321 | None:intergenic | 15.0% |
| !!! | GAAATTCAAACATTTTTTTA+AGG | + | chr4_4:73287672-73287691 | None:intergenic | 15.0% |
| !! | AAATAAGATAAATGAGATAA+GGG | + | chr4_4:73288302-73288321 | None:intergenic | 15.0% |
| !! | TTGAAATTTGAAGAAATAGA+AGG | + | chr4_4:73287280-73287299 | None:intergenic | 20.0% |
| !!! | TACACATTTTTAGAAATAGA+AGG | + | chr4_4:73287335-73287354 | None:intergenic | 20.0% |
| !!! | AGTTAAAATCATCTCATTTT+CGG | + | chr4_4:73287539-73287558 | None:intergenic | 20.0% |
| !! | GTTATGAAGAAATAAATATG+AGG | - | chr4_4:73287830-73287849 | Msa0701830:intron | 20.0% |
| !! | CAAATAAGATAAATGAGATA+AGG | + | chr4_4:73288303-73288322 | None:intergenic | 20.0% |
| !!! | ATCTTATTTGAAAGATTGAA+AGG | - | chr4_4:73288313-73288332 | Msa0701830:five_prime_UTR | 20.0% |
| !!! | AGAAACTTTTGAGTAATTTA+CGG | - | chr4_4:73288405-73288424 | Msa0701830:five_prime_UTR | 20.0% |
| !! | AAGTTTGAGTAATTTAAAGA+AGG | - | chr4_4:73288465-73288484 | Msa0701830:five_prime_UTR | 20.0% |
| !!! | TAATTAATGTATGTGACTTT+TGG | - | chr4_4:73288527-73288546 | Msa0701830:five_prime_UTR | 20.0% |
| !! | TTGAAATTTGAAGAAATAGA+AGG | + | chr4_4:73287280-73287299 | None:intergenic | 20.0% |
| !!! | TACACATTTTTAGAAATAGA+AGG | + | chr4_4:73287335-73287354 | None:intergenic | 20.0% |
| !!! | AGTTAAAATCATCTCATTTT+CGG | + | chr4_4:73287539-73287558 | None:intergenic | 20.0% |
| !! | GTTATGAAGAAATAAATATG+AGG | - | chr4_4:73287830-73287849 | Msa0701830:intron | 20.0% |
| !! | CAAATAAGATAAATGAGATA+AGG | + | chr4_4:73288303-73288322 | None:intergenic | 20.0% |
| !!! | ATCTTATTTGAAAGATTGAA+AGG | - | chr4_4:73288313-73288332 | Msa0701830:five_prime_UTR | 20.0% |
| !!! | AGAAACTTTTGAGTAATTTA+CGG | - | chr4_4:73288405-73288424 | Msa0701830:five_prime_UTR | 20.0% |
| !! | AAGTTTGAGTAATTTAAAGA+AGG | - | chr4_4:73288465-73288484 | Msa0701830:five_prime_UTR | 20.0% |
| !!! | TAATTAATGTATGTGACTTT+TGG | - | chr4_4:73288527-73288546 | Msa0701830:five_prime_UTR | 20.0% |
| ! | TAGAAATAGAAGGTAAATGA+TGG | + | chr4_4:73287325-73287344 | None:intergenic | 25.0% |
| ! | TAGTAATATAGAAGATGAGA+AGG | + | chr4_4:73287378-73287397 | None:intergenic | 25.0% |
| ! | TTTGTTTGTAGATCAATGAA+GGG | + | chr4_4:73287767-73287786 | None:intergenic | 25.0% |
| ! | ATCTGTAGATTTAAAAAAGC+AGG | + | chr4_4:73287919-73287938 | None:intergenic | 25.0% |
| !!! | ATTTAAAGAAGGCATCTTTT+TGG | - | chr4_4:73288476-73288495 | Msa0701830:five_prime_UTR | 25.0% |
| ! | TAGAAATAGAAGGTAAATGA+TGG | + | chr4_4:73287325-73287344 | None:intergenic | 25.0% |
| ! | TAGTAATATAGAAGATGAGA+AGG | + | chr4_4:73287378-73287397 | None:intergenic | 25.0% |
| ! | TTTGTTTGTAGATCAATGAA+GGG | + | chr4_4:73287767-73287786 | None:intergenic | 25.0% |
| ! | ATCTGTAGATTTAAAAAAGC+AGG | + | chr4_4:73287919-73287938 | None:intergenic | 25.0% |
| !!! | ATTTAAAGAAGGCATCTTTT+TGG | - | chr4_4:73288476-73288495 | Msa0701830:five_prime_UTR | 25.0% |
| TGTAGAAAGAATGTAAGAGA+GGG | + | chr4_4:73287134-73287153 | None:intergenic | 30.0% | |
| TTGTAGAAAGAATGTAAGAG+AGG | + | chr4_4:73287135-73287154 | None:intergenic | 30.0% | |
| !!! | GAGTTTTAGCTAAAATGAGA+AGG | + | chr4_4:73287184-73287203 | None:intergenic | 30.0% |
| ! | TCTTCAGTTTTTGCAATTTC+AGG | + | chr4_4:73287588-73287607 | None:intergenic | 30.0% |
| ! | CTTTGTTTGTAGATCAATGA+AGG | + | chr4_4:73287768-73287787 | None:intergenic | 30.0% |
| AAAGAAAAGAGACACAAATG+AGG | - | chr4_4:73287784-73287803 | Msa0701830:intron | 30.0% | |
| GAATACAAACAATTGCAGAA+AGG | - | chr4_4:73288352-73288371 | Msa0701830:five_prime_UTR | 30.0% | |
| TGTAGAAAGAATGTAAGAGA+GGG | + | chr4_4:73287134-73287153 | None:intergenic | 30.0% | |
| TTGTAGAAAGAATGTAAGAG+AGG | + | chr4_4:73287135-73287154 | None:intergenic | 30.0% | |
| !!! | GAGTTTTAGCTAAAATGAGA+AGG | + | chr4_4:73287184-73287203 | None:intergenic | 30.0% |
| ! | TCTTCAGTTTTTGCAATTTC+AGG | + | chr4_4:73287588-73287607 | None:intergenic | 30.0% |
| ! | CTTTGTTTGTAGATCAATGA+AGG | + | chr4_4:73287768-73287787 | None:intergenic | 30.0% |
| AAAGAAAAGAGACACAAATG+AGG | - | chr4_4:73287784-73287803 | Msa0701830:intron | 30.0% | |
| GAATACAAACAATTGCAGAA+AGG | - | chr4_4:73288352-73288371 | Msa0701830:five_prime_UTR | 30.0% | |
| ! | TTGATTGTTGTTATTGCTGC+AGG | - | chr4_4:73287461-73287480 | Msa0701830:intron | 35.0% |
| AGAAATTACTCGTCTTCATC+AGG | - | chr4_4:73287495-73287514 | Msa0701830:intron | 35.0% | |
| TGCTCTATAAATGTTGTTGC+AGG | - | chr4_4:73287720-73287739 | Msa0701830:intron | 35.0% | |
| GTTGTTGCAGGATAATGTAA+TGG | - | chr4_4:73287732-73287751 | Msa0701830:intron | 35.0% | |
| ! | CATTGCTGTAAAACGTGTTT+TGG | + | chr4_4:73288445-73288464 | None:intergenic | 35.0% |
| !! | TGTATGTGACTTTTGGAGAA+TGG | - | chr4_4:73288534-73288553 | Msa0701830:five_prime_UTR | 35.0% |
| AGGCAATCAATACAACTTAG+TGG | + | chr4_4:73288580-73288599 | None:intergenic | 35.0% | |
| ! | TTGATTGTTGTTATTGCTGC+AGG | - | chr4_4:73287461-73287480 | Msa0701830:intron | 35.0% |
| AGAAATTACTCGTCTTCATC+AGG | - | chr4_4:73287495-73287514 | Msa0701830:intron | 35.0% | |
| TGCTCTATAAATGTTGTTGC+AGG | - | chr4_4:73287720-73287739 | Msa0701830:intron | 35.0% | |
| GTTGTTGCAGGATAATGTAA+TGG | - | chr4_4:73287732-73287751 | Msa0701830:intron | 35.0% | |
| ! | CATTGCTGTAAAACGTGTTT+TGG | + | chr4_4:73288445-73288464 | None:intergenic | 35.0% |
| !! | TGTATGTGACTTTTGGAGAA+TGG | - | chr4_4:73288534-73288553 | Msa0701830:five_prime_UTR | 35.0% |
| AGGCAATCAATACAACTTAG+TGG | + | chr4_4:73288580-73288599 | None:intergenic | 35.0% | |
| CAATTTCAGGCGACAGTTTA+AGG | + | chr4_4:73287575-73287594 | None:intergenic | 40.0% | |
| ! | TGCAAAAACTGAAGAGTGTG+TGG | - | chr4_4:73287593-73287612 | Msa0701830:intron | 40.0% |
| ! | GCAAAAACTGAAGAGTGTGT+GGG | - | chr4_4:73287594-73287613 | Msa0701830:intron | 40.0% |
| TTTATAGAGCAGAGAGACAG+TGG | + | chr4_4:73287711-73287730 | None:intergenic | 40.0% | |
| TTGCCTCAATTATCACGTGA+AGG | - | chr4_4:73288594-73288613 | Msa0701830:five_prime_UTR | 40.0% | |
| CAACCTTCACGTGATAATTG+AGG | + | chr4_4:73288600-73288619 | None:intergenic | 40.0% | |
| CAATTTCAGGCGACAGTTTA+AGG | + | chr4_4:73287575-73287594 | None:intergenic | 40.0% | |
| ! | TGCAAAAACTGAAGAGTGTG+TGG | - | chr4_4:73287593-73287612 | Msa0701830:intron | 40.0% |
| ! | GCAAAAACTGAAGAGTGTGT+GGG | - | chr4_4:73287594-73287613 | Msa0701830:intron | 40.0% |
| TTTATAGAGCAGAGAGACAG+TGG | + | chr4_4:73287711-73287730 | None:intergenic | 40.0% | |
| TTGCCTCAATTATCACGTGA+AGG | - | chr4_4:73288594-73288613 | Msa0701830:five_prime_UTR | 40.0% | |
| CAACCTTCACGTGATAATTG+AGG | + | chr4_4:73288600-73288619 | None:intergenic | 40.0% | |
| !! | TTTATATGATAAAAAATATT+TGG | - | chr4_4:73288119-73288138 | Msa0701830:exon | 5.0% |
| !! | TTTATATGATAAAAAATATT+TGG | - | chr4_4:73288119-73288138 | Msa0701830:exon | 5.0% |
| ! | TGAAGAGTGTGTGGGAGAGA+AGG | - | chr4_4:73287602-73287621 | Msa0701830:intron | 50.0% |
| TAGAGCAGAGAGACAGTGGT+TGG | + | chr4_4:73287707-73287726 | None:intergenic | 50.0% | |
| ! | TGAAGAGTGTGTGGGAGAGA+AGG | - | chr4_4:73287602-73287621 | Msa0701830:intron | 50.0% |
| TAGAGCAGAGAGACAGTGGT+TGG | + | chr4_4:73287707-73287726 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 73287044 | 73288626 | 73287044 | ID=Msa0701830;Name=Msa0701830 |
| chr4_4 | mRNA | 73287044 | 73288626 | 73287044 | ID=Msa0701830-mRNA-1;Parent=Msa0701830;Name=Msa0701830-mRNA-1;_AED=0.10;_eAED=0.10;_QI=503|0.5|0.66|1|0|0.33|3|206|58 |
| chr4_4 | exon | 73287044 | 73287343 | 73287044 | ID=Msa0701830-mRNA-1:exon:22542;Parent=Msa0701830-mRNA-1 |
| chr4_4 | exon | 73287923 | 73287928 | 73287923 | ID=Msa0701830-mRNA-1:exon:22541;Parent=Msa0701830-mRNA-1 |
| chr4_4 | exon | 73288047 | 73288626 | 73288047 | ID=Msa0701830-mRNA-1:exon:22540;Parent=Msa0701830-mRNA-1 |
| chr4_4 | five_prime_UTR | 73288124 | 73288626 | 73288124 | ID=Msa0701830-mRNA-1:five_prime_utr;Parent=Msa0701830-mRNA-1 |
| chr4_4 | CDS | 73288047 | 73288123 | 73288047 | ID=Msa0701830-mRNA-1:cds;Parent=Msa0701830-mRNA-1 |
| chr4_4 | CDS | 73287923 | 73287928 | 73287923 | ID=Msa0701830-mRNA-1:cds;Parent=Msa0701830-mRNA-1 |
| chr4_4 | CDS | 73287250 | 73287343 | 73287250 | ID=Msa0701830-mRNA-1:cds;Parent=Msa0701830-mRNA-1 |
| chr4_4 | three_prime_UTR | 73287044 | 73287249 | 73287044 | ID=Msa0701830-mRNA-1:three_prime_utr;Parent=Msa0701830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
