Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002460 | Msa0326940 | 0.800570 | 1.354964e-48 | -8.615850e-47 |
| Msa0003890 | Msa0326940 | 0.816046 | 6.766901e-52 | -8.615850e-47 |
| Msa0021510 | Msa0326940 | 0.829402 | 5.253141e-55 | -8.615850e-47 |
| Msa0036140 | Msa0326940 | 0.807215 | 5.636965e-50 | -8.615850e-47 |
| Msa0044260 | Msa0326940 | 0.806737 | 7.115052e-50 | -8.615850e-47 |
| Msa0045790 | Msa0326940 | 0.823237 | 1.543061e-53 | -8.615850e-47 |
| Msa0046160 | Msa0326940 | 0.822849 | 1.901020e-53 | -8.615850e-47 |
| Msa0054480 | Msa0326940 | 0.814489 | 1.500935e-51 | -8.615850e-47 |
| Msa0080090 | Msa0326940 | 0.836062 | 1.165952e-56 | -8.615850e-47 |
| Msa0084380 | Msa0326940 | 0.814165 | 1.770304e-51 | -8.615850e-47 |
| Msa0114060 | Msa0326940 | 0.806528 | 7.872608e-50 | -8.615850e-47 |
| Msa0142220 | Msa0326940 | 0.800632 | 1.315908e-48 | -8.615850e-47 |
| Msa0143560 | Msa0326940 | 0.802895 | 4.514264e-49 | -8.615850e-47 |
| Msa0198340 | Msa0326940 | 0.804433 | 2.165364e-49 | -8.615850e-47 |
| Msa0211150 | Msa0326940 | 0.812590 | 3.928051e-51 | -8.615850e-47 |
| Msa0212990 | Msa0326940 | 0.831651 | 1.479322e-55 | -8.615850e-47 |
| Msa0216910 | Msa0326940 | 0.802125 | 6.507468e-49 | -8.615850e-47 |
| Msa0219590 | Msa0326940 | 0.818379 | 2.020894e-52 | -8.615850e-47 |
| Msa0221470 | Msa0326940 | 0.803789 | 2.948526e-49 | -8.615850e-47 |
| Msa0225110 | Msa0326940 | 0.800885 | 1.168436e-48 | -8.615850e-47 |
| Msa0225220 | Msa0326940 | 0.823134 | 1.631272e-53 | -8.615850e-47 |
| Msa0231060 | Msa0326940 | 0.808308 | 3.300438e-50 | -8.615850e-47 |
| Msa0260780 | Msa0326940 | 0.808340 | 3.250138e-50 | -8.615850e-47 |
| Msa0264830 | Msa0326940 | 0.803404 | 3.543318e-49 | -8.615850e-47 |
| Msa0266200 | Msa0326940 | 0.801145 | 1.033940e-48 | -8.615850e-47 |
| Msa0267370 | Msa0326940 | 0.821145 | 4.718512e-53 | -8.615850e-47 |
| Msa0296480 | Msa0326940 | 0.806339 | 8.630149e-50 | -8.615850e-47 |
| Msa0302870 | Msa0326940 | 0.800137 | 1.659584e-48 | -8.615850e-47 |
| Msa0309770 | Msa0326940 | 0.800982 | 1.116253e-48 | -8.615850e-47 |
| Msa0325830 | Msa0326940 | 0.822198 | 2.692846e-53 | -8.615850e-47 |
| Msa0326940 | Msa0330340 | 0.831917 | 1.271742e-55 | -8.615850e-47 |
| Msa0326940 | Msa0342010 | 0.810128 | 1.344192e-50 | -8.615850e-47 |
| Msa0326940 | Msa0358890 | 0.803571 | 3.271822e-49 | -8.615850e-47 |
| Msa0326940 | Msa0363790 | 0.815990 | 6.962935e-52 | -8.615850e-47 |
| Msa0326940 | Msa0367870 | 0.821120 | 4.780560e-53 | -8.615850e-47 |
| Msa0326940 | Msa0376350 | 0.800621 | 1.322537e-48 | -8.615850e-47 |
| Msa0326940 | Msa0386090 | 0.818293 | 2.114350e-52 | -8.615850e-47 |
| Msa0326940 | Msa0393620 | 0.807602 | 4.665706e-50 | -8.615850e-47 |
| Msa0326940 | Msa0405130 | 0.806701 | 7.238130e-50 | -8.615850e-47 |
| Msa0326940 | Msa0411390 | 0.816467 | 5.446762e-52 | -8.615850e-47 |
| Msa0326940 | Msa0424790 | 0.800389 | 1.474714e-48 | -8.615850e-47 |
| Msa0326940 | Msa0425170 | 0.809399 | 1.928742e-50 | -8.615850e-47 |
| Msa0326940 | Msa0430420 | 0.802836 | 4.643596e-49 | -8.615850e-47 |
| Msa0326940 | Msa0440400 | 0.836716 | 7.951577e-57 | -8.615850e-47 |
| Msa0326940 | Msa0455760 | 0.810159 | 1.324148e-50 | -8.615850e-47 |
| Msa0326940 | Msa0464120 | 0.806850 | 6.732680e-50 | -8.615850e-47 |
| Msa0326940 | Msa0464680 | 0.810426 | 1.159444e-50 | -8.615850e-47 |
| Msa0326940 | Msa0484650 | 0.804238 | 2.377490e-49 | -8.615850e-47 |
| Msa0326940 | Msa0518380 | 0.805520 | 1.282758e-49 | -8.615850e-47 |
| Msa0326940 | Msa0529890 | 0.821393 | 4.135191e-53 | -8.615850e-47 |
| Msa0326940 | Msa0531180 | 0.839192 | 1.835669e-57 | -8.615850e-47 |
| Msa0326940 | Msa0532350 | 0.806979 | 6.323055e-50 | -8.615850e-47 |
| Msa0326940 | Msa0537500 | 0.803153 | 3.993425e-49 | -8.615850e-47 |
| Msa0326940 | Msa0545210 | 0.805483 | 1.306416e-49 | -8.615850e-47 |
| Msa0326940 | Msa0553240 | 0.818736 | 1.677543e-52 | -8.615850e-47 |
| Msa0326940 | Msa0569200 | 0.801569 | 8.463922e-49 | -8.615850e-47 |
| Msa0326940 | Msa0571010 | 0.812016 | 5.241967e-51 | -8.615850e-47 |
| Msa0326940 | Msa0571630 | 0.805539 | 1.271088e-49 | -8.615850e-47 |
| Msa0326940 | Msa0574390 | 0.806687 | 7.287337e-50 | -8.615850e-47 |
| Msa0326940 | Msa0585560 | 0.815246 | 1.019895e-51 | -8.615850e-47 |
| Msa0326940 | Msa0600710 | 0.804891 | 1.737372e-49 | -8.615850e-47 |
| Msa0326940 | Msa0607310 | 0.803869 | 2.837363e-49 | -8.615850e-47 |
| Msa0326940 | Msa0616070 | 0.811734 | 6.037803e-51 | -8.615850e-47 |
| Msa0326940 | Msa0622650 | 0.802455 | 5.564456e-49 | -8.615850e-47 |
| Msa0326940 | Msa0625190 | 0.804273 | 2.338451e-49 | -8.615850e-47 |
| Msa0326940 | Msa0625720 | 0.821455 | 4.001539e-53 | -8.615850e-47 |
| Msa0326940 | Msa0629450 | 0.810415 | 1.165947e-50 | -8.615850e-47 |
| Msa0326940 | Msa0633700 | 0.809194 | 2.134448e-50 | -8.615850e-47 |
| Msa0326940 | Msa0661650 | 0.831722 | 1.420968e-55 | -8.615850e-47 |
| Msa0326940 | Msa0663390 | 0.807719 | 4.405563e-50 | -8.615850e-47 |
| Msa0326940 | Msa0672690 | 0.804231 | 2.385305e-49 | -8.615850e-47 |
| Msa0326940 | Msa0679750 | 0.819470 | 1.142250e-52 | -8.615850e-47 |
| Msa0326940 | Msa0680660 | 0.827925 | 1.194943e-54 | -8.615850e-47 |
| Msa0326940 | Msa0681250 | 0.848866 | 4.665181e-60 | -8.615850e-47 |
| Msa0326940 | Msa0681270 | 0.844630 | 6.712793e-59 | -8.615850e-47 |
| Msa0326940 | Msa0685900 | 0.808529 | 2.961636e-50 | -8.615850e-47 |
| Msa0326940 | Msa0701830 | 0.990815 | 1.843680e-184 | -8.615850e-47 |
| Msa0326940 | Msa0701900 | 0.803984 | 2.685222e-49 | -8.615850e-47 |
| Msa0326940 | Msa0703360 | 0.984505 | 9.335918e-161 | -8.615850e-47 |
| Msa0326940 | Msa0707250 | 0.805487 | 1.303474e-49 | -8.615850e-47 |
| Msa0326940 | Msa0709010 | 0.927631 | 8.977338e-92 | -8.615850e-47 |
| Msa0326940 | Msa0717890 | 0.818839 | 1.589958e-52 | -8.615850e-47 |
| Msa0326940 | Msa0724210 | 0.818099 | 2.339026e-52 | -8.615850e-47 |
| Msa0326940 | Msa0731940 | 0.836011 | 1.201217e-56 | -8.615850e-47 |
| Msa0326940 | Msa0753720 | 0.814343 | 1.617029e-51 | -8.615850e-47 |
| Msa0326940 | Msa0760130 | 0.810566 | 1.081514e-50 | -8.615850e-47 |
| Msa0326940 | Msa0766630 | 0.817518 | 3.163820e-52 | -8.615850e-47 |
| Msa0326940 | Msa0774160 | 0.925993 | 8.624077e-91 | -8.615850e-47 |
| Msa0326940 | Msa0779320 | 0.817939 | 2.542334e-52 | -8.615850e-47 |
| Msa0326940 | Msa0790600 | 0.806257 | 8.980375e-50 | -8.615850e-47 |
| Msa0326940 | Msa0792540 | 0.801109 | 1.051281e-48 | -8.615850e-47 |
| Msa0326940 | Msa0797770 | 0.807675 | 4.501740e-50 | -8.615850e-47 |
| Msa0326940 | Msa0817460 | 0.821084 | 4.871793e-53 | -8.615850e-47 |
| Msa0326940 | Msa0831110 | 0.818078 | 2.364682e-52 | -8.615850e-47 |
| Msa0326940 | Msa0832340 | 0.801860 | 7.378302e-49 | -8.615850e-47 |
| Msa0326940 | Msa0835230 | 0.803333 | 3.664745e-49 | -8.615850e-47 |
| Msa0326940 | Msa0875290 | 0.805460 | 1.320652e-49 | -8.615850e-47 |
| Msa0326940 | Msa0880950 | 0.828525 | 8.564838e-55 | -8.615850e-47 |
| Msa0326940 | Msa0897330 | 0.811964 | 5.380366e-51 | -8.615850e-47 |
| Msa0326940 | Msa0898750 | 0.811793 | 5.861457e-51 | -8.615850e-47 |
| Msa0326940 | Msa0899980 | 0.813393 | 2.618960e-51 | -8.615850e-47 |
| Msa0326940 | Msa0900620 | 0.818004 | 2.458083e-52 | -8.615850e-47 |
| Msa0326940 | Msa0901400 | 0.805567 | 1.253962e-49 | -8.615850e-47 |
| Msa0326940 | Msa0927310 | 0.818923 | 1.521183e-52 | -8.615850e-47 |
| Msa0326940 | Msa0928130 | 0.812238 | 4.686877e-51 | -8.615850e-47 |
| Msa0326940 | Msa0935670 | 0.811994 | 5.298869e-51 | -8.615850e-47 |
| Msa0326940 | Msa0935910 | 0.809322 | 2.003952e-50 | -8.615850e-47 |
| Msa0326940 | Msa0964310 | 0.808666 | 2.769027e-50 | -8.615850e-47 |
| Msa0326940 | Msa0965360 | 0.827487 | 1.522487e-54 | -8.615850e-47 |
| Msa0326940 | Msa0965610 | 0.809723 | 1.643469e-50 | -8.615850e-47 |
| Msa0326940 | Msa0974070 | 0.806623 | 7.516947e-50 | -8.615850e-47 |
| Msa0326940 | Msa0974080 | 0.800208 | 1.605221e-48 | -8.615850e-47 |
| Msa0326940 | Msa0989360 | 0.820381 | 7.067274e-53 | -8.615850e-47 |
| Msa0326940 | Msa0999290 | 0.815971 | 7.030982e-52 | -8.615850e-47 |
| Msa0326940 | Msa0999870 | 0.821020 | 5.041573e-53 | -8.615850e-47 |
| Msa0326940 | Msa1001180 | 0.804705 | 1.899954e-49 | -8.615850e-47 |
| Msa0326940 | Msa1002000 | 0.804455 | 2.142740e-49 | -8.615850e-47 |
| Msa0326940 | Msa1004800 | 0.805708 | 1.171385e-49 | -8.615850e-47 |
| Msa0326940 | Msa1004840 | 0.828837 | 7.201029e-55 | -8.615850e-47 |
| Msa0326940 | Msa1004970 | 0.815902 | 7.286155e-52 | -8.615850e-47 |
| Msa0326940 | Msa1014540 | 0.809964 | 1.458522e-50 | -8.615850e-47 |
| Msa0326940 | Msa1016320 | 0.813417 | 2.587172e-51 | -8.615850e-47 |
| Msa0326940 | Msa1023950 | 0.817491 | 3.208037e-52 | -8.615850e-47 |
| Msa0326940 | Msa1026740 | 0.800077 | 1.706699e-48 | -8.615850e-47 |
| Msa0326940 | Msa1035480 | 0.831714 | 1.427292e-55 | -8.615850e-47 |
| Msa0326940 | Msa1035540 | 0.806903 | 6.561259e-50 | -8.615850e-47 |
| Msa0326940 | Msa1036610 | 0.805398 | 1.360790e-49 | -8.615850e-47 |
| Msa0326940 | Msa1037780 | 0.832152 | 1.112942e-55 | -8.615850e-47 |
| Msa0326940 | Msa1047080 | 0.806226 | 9.118785e-50 | -8.615850e-47 |
| Msa0326940 | Msa1066670 | 0.827421 | 1.578845e-54 | -8.615850e-47 |
| Msa0326940 | Msa1075540 | 0.827205 | 1.778914e-54 | -8.615850e-47 |
| Msa0326940 | Msa1075650 | 0.836957 | 6.902009e-57 | -8.615850e-47 |
| Msa0326940 | Msa1082500 | 0.801176 | 1.018555e-48 | -8.615850e-47 |
| Msa0326940 | Msa1083840 | 0.834091 | 3.663115e-56 | -8.615850e-47 |
| Msa0326940 | Msa1101090 | 0.825890 | 3.662335e-54 | -8.615850e-47 |
| Msa0326940 | Msa1108760 | 0.809681 | 1.677964e-50 | -8.615850e-47 |
| Msa0326940 | Msa1113170 | 0.809645 | 1.708089e-50 | -8.615850e-47 |
| Msa0326940 | Msa1142020 | 0.812684 | 3.746261e-51 | -8.615850e-47 |
| Msa0326940 | Msa1147740 | 0.809591 | 1.754212e-50 | -8.615850e-47 |
| Msa0326940 | Msa1152440 | 0.803519 | 3.354424e-49 | -8.615850e-47 |
| Msa0326940 | Msa1162780 | 0.825718 | 4.022275e-54 | -8.615850e-47 |
| Msa0326940 | Msa1163090 | 0.835709 | 1.432944e-56 | -8.615850e-47 |
| Msa0326940 | Msa1171710 | 0.804081 | 2.563196e-49 | -8.615850e-47 |
| Msa0326940 | Msa1181910 | 0.807145 | 5.830948e-50 | -8.615850e-47 |
| Msa0326940 | Msa1186020 | 0.800909 | 1.155007e-48 | -8.615850e-47 |
| Msa0326940 | Msa1199570 | 0.806627 | 7.505047e-50 | -8.615850e-47 |
| Msa0326940 | Msa1207220 | 0.813107 | 3.025270e-51 | -8.615850e-47 |
| Msa0326940 | Msa1232700 | 0.813876 | 2.049854e-51 | -8.615850e-47 |
| Msa0326940 | Msa1239920 | 0.800377 | 1.482693e-48 | -8.615850e-47 |
| Msa0326940 | Msa1246360 | 0.805051 | 1.608559e-49 | -8.615850e-47 |
| Msa0326940 | Msa1284680 | 0.812562 | 3.983656e-51 | -8.615850e-47 |
| Msa0326940 | Msa1297230 | 0.808841 | 2.539894e-50 | -8.615850e-47 |
| Msa0326940 | Msa1297290 | 0.805426 | 1.342714e-49 | -8.615850e-47 |
| Msa0326940 | Msa1307560 | 0.813474 | 2.513617e-51 | -8.615850e-47 |
| Msa0326940 | Msa1308870 | 0.819797 | 9.615193e-53 | -8.615850e-47 |
| Msa0326940 | Msa1309030 | 0.804613 | 1.985897e-49 | -8.615850e-47 |
| Msa0326940 | Msa1313280 | 0.864164 | 1.480227e-64 | -8.615850e-47 |
| Msa0326940 | Msa1328710 | 0.806545 | 7.810136e-50 | -8.615850e-47 |
| Msa0326940 | Msa1331000 | 0.823882 | 1.090367e-53 | -8.615850e-47 |
| Msa0326940 | Msa1337670 | 0.812197 | 4.784868e-51 | -8.615850e-47 |
| Msa0326940 | Msa1341520 | 0.804374 | 2.227696e-49 | -8.615850e-47 |
| Msa0326940 | Msa1368430 | 0.800639 | 1.311768e-48 | -8.615850e-47 |
| Msa0326940 | Msa1372980 | 0.800467 | 1.421855e-48 | -8.615850e-47 |
| Msa0326940 | Msa1373010 | 0.811456 | 6.939025e-51 | -8.615850e-47 |
| Msa0326940 | Msa1373030 | 0.817564 | 3.088855e-52 | -8.615850e-47 |
| Msa0326940 | Msa1385000 | 0.804265 | 2.346673e-49 | -8.615850e-47 |
| Msa0326940 | Msa1388930 | 0.809202 | 2.126346e-50 | -8.615850e-47 |
| Msa0326940 | Msa1388970 | 0.812736 | 3.649661e-51 | -8.615850e-47 |
| Msa0326940 | Msa1392240 | 0.809419 | 1.910252e-50 | -8.615850e-47 |
| Msa0326940 | Msa1394380 | 0.821871 | 3.207015e-53 | -8.615850e-47 |
| Msa0326940 | Msa1405030 | 0.820878 | 5.433613e-53 | -8.615850e-47 |
| Msa0326940 | Msa1409700 | 0.825201 | 5.332640e-54 | -8.615850e-47 |
| Msa0326940 | Msa1413610 | 0.809978 | 1.448093e-50 | -8.615850e-47 |
| Msa0326940 | Msa1433810 | 0.805610 | 1.228343e-49 | -8.615850e-47 |
| Msa0326940 | Msa1436480 | 0.825537 | 4.441522e-54 | -8.615850e-47 |
| Msa0326940 | Msa1440560 | 0.827251 | 1.734302e-54 | -8.615850e-47 |
| Msa0326940 | Msa1448560 | 0.813146 | 2.967114e-51 | -8.615850e-47 |
| Msa0326940 | Msa1453320 | 0.812153 | 4.892335e-51 | -8.615850e-47 |
| Msa0326940 | Msa1454620 | 0.804036 | 2.619550e-49 | -8.615850e-47 |
| Msa0326940 | Msa1463900 | 0.843916 | 1.043953e-58 | -8.615850e-47 |
| Msa0326940 | Msa1464810 | 0.804569 | 2.028120e-49 | -8.615850e-47 |
| Msa0326940 | Msa1466540 | 0.802460 | 5.551311e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 17 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCAGGCGACAGTTTA+AGG | 0.122983 | 2_4:+38194466 | None:intergenic |
| TAATTAATGTATGTGACTTT+TGG | 0.258825 | 2_4:-38193511 | Msa0326940:three_prime_UTR |
| CATTGCTGTAAAACGTGTTT+TGG | 0.309510 | 2_4:+38193596 | None:intergenic |
| TTGAAATTTGAAGAAATAGA+AGG | 0.329500 | 2_4:+38194761 | None:intergenic |
| TAGAAATAGAAGGTAAATGA+TGG | 0.424500 | 2_4:+38194716 | None:intergenic |
| AGAAATTACTCGTCTTCATC+AGG | 0.431687 | 2_4:-38194543 | Msa0326940:five_prime_UTR |
| TTGATTGTTGTTATTGCTGC+AGG | 0.431879 | 2_4:-38194577 | Msa0326940:five_prime_UTR |
| AAGTTTGAGTAATTTAAAGA+AGG | 0.477272 | 2_4:-38193573 | Msa0326940:three_prime_UTR |
| TTGTAGAAAGAATGTAAGAG+AGG | 0.519392 | 2_4:+38194906 | None:intergenic |
| TAGTAATATAGAAGATGAGA+AGG | 0.519700 | 2_4:+38194663 | None:intergenic |
| TGTAGAAAGAATGTAAGAGA+GGG | 0.528156 | 2_4:+38194907 | None:intergenic |
| ATCTTATTTGAAAGATTGAA+AGG | 0.529072 | 2_4:-38193725 | Msa0326940:intron |
| AGGCAATCAATACAACTTAG+TGG | 0.556871 | 2_4:+38193461 | None:intergenic |
| TGAAGAGTGTGTGGGAGAGA+AGG | 0.573340 | 2_4:-38194436 | Msa0326940:intron |
| TTGCCTCAATTATCACGTGA+AGG | 0.577241 | 2_4:-38193444 | Msa0326940:three_prime_UTR |
| CAACCTTCACGTGATAATTG+AGG | 0.587359 | 2_4:+38193441 | None:intergenic |
| GAATACAAACAATTGCAGAA+AGG | 0.599398 | 2_4:-38193686 | Msa0326940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATTCAAACATTTTTTTA+AGG | + | chr2_4:38194062-38194081 | None:intergenic | 15.0% |
| !! | AAATAAGATAAATGAGATAA+GGG | + | chr2_4:38194692-38194711 | None:intergenic | 15.0% |
| !!! | GAAATTCAAACATTTTTTTA+AGG | + | chr2_4:38194062-38194081 | None:intergenic | 15.0% |
| !! | AAATAAGATAAATGAGATAA+GGG | + | chr2_4:38194692-38194711 | None:intergenic | 15.0% |
| !! | TTGAAATTTGAAGAAATAGA+AGG | + | chr2_4:38193670-38193689 | None:intergenic | 20.0% |
| !!! | TACACATTTTTAGAAATAGA+AGG | + | chr2_4:38193725-38193744 | None:intergenic | 20.0% |
| !!! | AGTTAAAATCATCTCATTTT+CGG | + | chr2_4:38193929-38193948 | None:intergenic | 20.0% |
| !! | GTTATGAAGAAATAAATATG+AGG | - | chr2_4:38194220-38194239 | Msa0326940:intron | 20.0% |
| !! | CAAATAAGATAAATGAGATA+AGG | + | chr2_4:38194693-38194712 | None:intergenic | 20.0% |
| !!! | ATCTTATTTGAAAGATTGAA+AGG | - | chr2_4:38194703-38194722 | Msa0326940:five_prime_UTR | 20.0% |
| !!! | AGAAACTTTTGAGTAATTTA+CGG | - | chr2_4:38194795-38194814 | Msa0326940:five_prime_UTR | 20.0% |
| !! | AAGTTTGAGTAATTTAAAGA+AGG | - | chr2_4:38194855-38194874 | Msa0326940:five_prime_UTR | 20.0% |
| !!! | TAATTAATGTATGTGACTTT+TGG | - | chr2_4:38194917-38194936 | Msa0326940:five_prime_UTR | 20.0% |
| !! | TTGAAATTTGAAGAAATAGA+AGG | + | chr2_4:38193670-38193689 | None:intergenic | 20.0% |
| !!! | TACACATTTTTAGAAATAGA+AGG | + | chr2_4:38193725-38193744 | None:intergenic | 20.0% |
| !!! | AGTTAAAATCATCTCATTTT+CGG | + | chr2_4:38193929-38193948 | None:intergenic | 20.0% |
| !! | GTTATGAAGAAATAAATATG+AGG | - | chr2_4:38194220-38194239 | Msa0326940:intron | 20.0% |
| !! | CAAATAAGATAAATGAGATA+AGG | + | chr2_4:38194693-38194712 | None:intergenic | 20.0% |
| !!! | ATCTTATTTGAAAGATTGAA+AGG | - | chr2_4:38194703-38194722 | Msa0326940:five_prime_UTR | 20.0% |
| !!! | AGAAACTTTTGAGTAATTTA+CGG | - | chr2_4:38194795-38194814 | Msa0326940:five_prime_UTR | 20.0% |
| !! | AAGTTTGAGTAATTTAAAGA+AGG | - | chr2_4:38194855-38194874 | Msa0326940:five_prime_UTR | 20.0% |
| !!! | TAATTAATGTATGTGACTTT+TGG | - | chr2_4:38194917-38194936 | Msa0326940:five_prime_UTR | 20.0% |
| ! | TAGAAATAGAAGGTAAATGA+TGG | + | chr2_4:38193715-38193734 | None:intergenic | 25.0% |
| ! | TAGTAATATAGAAGATGAGA+AGG | + | chr2_4:38193768-38193787 | None:intergenic | 25.0% |
| ! | TTTGTTTGTAGATCAATGAA+GGG | + | chr2_4:38194157-38194176 | None:intergenic | 25.0% |
| ! | ATCTGTAGATTTAAAAAAGC+AGG | + | chr2_4:38194309-38194328 | None:intergenic | 25.0% |
| !!! | ATTTAAAGAAGGCATCTTTT+TGG | - | chr2_4:38194866-38194885 | Msa0326940:five_prime_UTR | 25.0% |
| ! | TAGAAATAGAAGGTAAATGA+TGG | + | chr2_4:38193715-38193734 | None:intergenic | 25.0% |
| ! | TAGTAATATAGAAGATGAGA+AGG | + | chr2_4:38193768-38193787 | None:intergenic | 25.0% |
| ! | TTTGTTTGTAGATCAATGAA+GGG | + | chr2_4:38194157-38194176 | None:intergenic | 25.0% |
| ! | ATCTGTAGATTTAAAAAAGC+AGG | + | chr2_4:38194309-38194328 | None:intergenic | 25.0% |
| !!! | ATTTAAAGAAGGCATCTTTT+TGG | - | chr2_4:38194866-38194885 | Msa0326940:five_prime_UTR | 25.0% |
| TGTAGAAAGAATGTAAGAGA+GGG | + | chr2_4:38193524-38193543 | None:intergenic | 30.0% | |
| TTGTAGAAAGAATGTAAGAG+AGG | + | chr2_4:38193525-38193544 | None:intergenic | 30.0% | |
| !!! | GAGTTTTAGCTAAAATGAGA+AGG | + | chr2_4:38193574-38193593 | None:intergenic | 30.0% |
| ! | TCTTCAGTTTTTGCAATTTC+AGG | + | chr2_4:38193978-38193997 | None:intergenic | 30.0% |
| ! | CTTTGTTTGTAGATCAATGA+AGG | + | chr2_4:38194158-38194177 | None:intergenic | 30.0% |
| AAAGAAAAGAGACACAAATG+AGG | - | chr2_4:38194174-38194193 | Msa0326940:intron | 30.0% | |
| GAATACAAACAATTGCAGAA+AGG | - | chr2_4:38194742-38194761 | Msa0326940:five_prime_UTR | 30.0% | |
| TGTAGAAAGAATGTAAGAGA+GGG | + | chr2_4:38193524-38193543 | None:intergenic | 30.0% | |
| TTGTAGAAAGAATGTAAGAG+AGG | + | chr2_4:38193525-38193544 | None:intergenic | 30.0% | |
| !!! | GAGTTTTAGCTAAAATGAGA+AGG | + | chr2_4:38193574-38193593 | None:intergenic | 30.0% |
| ! | TCTTCAGTTTTTGCAATTTC+AGG | + | chr2_4:38193978-38193997 | None:intergenic | 30.0% |
| ! | CTTTGTTTGTAGATCAATGA+AGG | + | chr2_4:38194158-38194177 | None:intergenic | 30.0% |
| AAAGAAAAGAGACACAAATG+AGG | - | chr2_4:38194174-38194193 | Msa0326940:intron | 30.0% | |
| GAATACAAACAATTGCAGAA+AGG | - | chr2_4:38194742-38194761 | Msa0326940:five_prime_UTR | 30.0% | |
| ! | TTGATTGTTGTTATTGCTGC+AGG | - | chr2_4:38193851-38193870 | Msa0326940:intron | 35.0% |
| AGAAATTACTCGTCTTCATC+AGG | - | chr2_4:38193885-38193904 | Msa0326940:intron | 35.0% | |
| TGCTCTATAAATGTTGTTGC+AGG | - | chr2_4:38194110-38194129 | Msa0326940:intron | 35.0% | |
| GTTGTTGCAGGATAATGTAA+TGG | - | chr2_4:38194122-38194141 | Msa0326940:intron | 35.0% | |
| ! | CATTGCTGTAAAACGTGTTT+TGG | + | chr2_4:38194835-38194854 | None:intergenic | 35.0% |
| !! | TGTATGTGACTTTTGGAGAA+TGG | - | chr2_4:38194924-38194943 | Msa0326940:five_prime_UTR | 35.0% |
| AGGCAATCAATACAACTTAG+TGG | + | chr2_4:38194970-38194989 | None:intergenic | 35.0% | |
| ! | TTGATTGTTGTTATTGCTGC+AGG | - | chr2_4:38193851-38193870 | Msa0326940:intron | 35.0% |
| AGAAATTACTCGTCTTCATC+AGG | - | chr2_4:38193885-38193904 | Msa0326940:intron | 35.0% | |
| TGCTCTATAAATGTTGTTGC+AGG | - | chr2_4:38194110-38194129 | Msa0326940:intron | 35.0% | |
| GTTGTTGCAGGATAATGTAA+TGG | - | chr2_4:38194122-38194141 | Msa0326940:intron | 35.0% | |
| ! | CATTGCTGTAAAACGTGTTT+TGG | + | chr2_4:38194835-38194854 | None:intergenic | 35.0% |
| !! | TGTATGTGACTTTTGGAGAA+TGG | - | chr2_4:38194924-38194943 | Msa0326940:five_prime_UTR | 35.0% |
| AGGCAATCAATACAACTTAG+TGG | + | chr2_4:38194970-38194989 | None:intergenic | 35.0% | |
| CAATTTCAGGCGACAGTTTA+AGG | + | chr2_4:38193965-38193984 | None:intergenic | 40.0% | |
| ! | TGCAAAAACTGAAGAGTGTG+TGG | - | chr2_4:38193983-38194002 | Msa0326940:intron | 40.0% |
| ! | GCAAAAACTGAAGAGTGTGT+GGG | - | chr2_4:38193984-38194003 | Msa0326940:intron | 40.0% |
| TTTATAGAGCAGAGAGACAG+TGG | + | chr2_4:38194101-38194120 | None:intergenic | 40.0% | |
| TTGCCTCAATTATCACGTGA+AGG | - | chr2_4:38194984-38195003 | Msa0326940:five_prime_UTR | 40.0% | |
| CAACCTTCACGTGATAATTG+AGG | + | chr2_4:38194990-38195009 | None:intergenic | 40.0% | |
| CAATTTCAGGCGACAGTTTA+AGG | + | chr2_4:38193965-38193984 | None:intergenic | 40.0% | |
| ! | TGCAAAAACTGAAGAGTGTG+TGG | - | chr2_4:38193983-38194002 | Msa0326940:intron | 40.0% |
| ! | GCAAAAACTGAAGAGTGTGT+GGG | - | chr2_4:38193984-38194003 | Msa0326940:intron | 40.0% |
| TTTATAGAGCAGAGAGACAG+TGG | + | chr2_4:38194101-38194120 | None:intergenic | 40.0% | |
| TTGCCTCAATTATCACGTGA+AGG | - | chr2_4:38194984-38195003 | Msa0326940:five_prime_UTR | 40.0% | |
| CAACCTTCACGTGATAATTG+AGG | + | chr2_4:38194990-38195009 | None:intergenic | 40.0% | |
| !! | TTTATATGATAAAAAATATT+TGG | - | chr2_4:38194509-38194528 | Msa0326940:exon | 5.0% |
| !! | TTTATATGATAAAAAATATT+TGG | - | chr2_4:38194509-38194528 | Msa0326940:exon | 5.0% |
| ! | TGAAGAGTGTGTGGGAGAGA+AGG | - | chr2_4:38193992-38194011 | Msa0326940:intron | 50.0% |
| TAGAGCAGAGAGACAGTGGT+TGG | + | chr2_4:38194097-38194116 | None:intergenic | 50.0% | |
| ! | TGAAGAGTGTGTGGGAGAGA+AGG | - | chr2_4:38193992-38194011 | Msa0326940:intron | 50.0% |
| TAGAGCAGAGAGACAGTGGT+TGG | + | chr2_4:38194097-38194116 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 38193434 | 38195016 | 38193434 | ID=Msa0326940;Name=Msa0326940 |
| chr2_4 | mRNA | 38193434 | 38195016 | 38193434 | ID=Msa0326940-mRNA-1;Parent=Msa0326940;Name=Msa0326940-mRNA-1;_AED=0.10;_eAED=0.10;_QI=503|0|1|1|0|0.5|2|206|56 |
| chr2_4 | exon | 38193434 | 38193733 | 38193434 | ID=Msa0326940-mRNA-1:exon:11484;Parent=Msa0326940-mRNA-1 |
| chr2_4 | exon | 38194437 | 38195016 | 38194437 | ID=Msa0326940-mRNA-1:exon:11483;Parent=Msa0326940-mRNA-1 |
| chr2_4 | five_prime_UTR | 38194514 | 38195016 | 38194514 | ID=Msa0326940-mRNA-1:five_prime_utr;Parent=Msa0326940-mRNA-1 |
| chr2_4 | CDS | 38194437 | 38194513 | 38194437 | ID=Msa0326940-mRNA-1:cds;Parent=Msa0326940-mRNA-1 |
| chr2_4 | CDS | 38193640 | 38193733 | 38193640 | ID=Msa0326940-mRNA-1:cds;Parent=Msa0326940-mRNA-1 |
| chr2_4 | three_prime_UTR | 38193434 | 38193639 | 38193434 | ID=Msa0326940-mRNA-1:three_prime_utr;Parent=Msa0326940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
