Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346120 | XP_013446868.1 | 95.814 | 215 | 8 | 1 | 1 | 215 | 1 | 214 | 1.32e-142 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346120 | sp|Q8LGD5|MKS1_ARATH | 42.534 | 221 | 103 | 9 | 1 | 213 | 1 | 205 | 7.32e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346120 | G7LD80 | 95.814 | 215 | 8 | 1 | 1 | 215 | 1 | 214 | 6.29e-143 | 407 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1346120 | Msa1384120 | 0.808741 | 2.667854e-50 | -8.615850e-47 |
| Msa1346120 | Msa1456890 | 0.836040 | 1.181093e-56 | -8.615850e-47 |
| Msa0655990 | Msa1346120 | 0.805041 | 1.616428e-49 | -8.615850e-47 |
| Msa0699920 | Msa1346120 | 0.810927 | 9.037914e-51 | -8.615850e-47 |
| Msa1295020 | Msa1346120 | 0.830039 | 3.675811e-55 | -8.615850e-47 |
| Msa1330000 | Msa1346120 | 0.840506 | 8.345507e-58 | -8.615850e-47 |
| Msa1343140 | Msa1346120 | 0.806248 | 9.021839e-50 | -8.615850e-47 |
| Msa0459730 | Msa1346120 | 0.823883 | 1.089932e-53 | -8.615850e-47 |
| Msa0465670 | Msa1346120 | 0.817359 | 3.436179e-52 | -8.615850e-47 |
| Msa0343630 | Msa1346120 | 0.834153 | 3.532628e-56 | -8.615850e-47 |
| Msa1202000 | Msa1346120 | 0.829991 | 3.775932e-55 | -8.615850e-47 |
| Msa0506530 | Msa1346120 | 0.851258 | 9.976966e-61 | -8.615850e-47 |
| Msa0585000 | Msa1346120 | 0.805497 | 1.297374e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346120 | MtrunA17_Chr8g0384091 | 95.814 | 215 | 8 | 1 | 1 | 215 | 1 | 214 | 1.21e-146 | 407 |
| Msa1346120 | MtrunA17_Chr3g0126211 | 39.841 | 251 | 102 | 11 | 4 | 214 | 5 | 246 | 2.43e-27 | 104 |
| Msa1346120 | MtrunA17_Chr1g0159171 | 31.441 | 229 | 107 | 6 | 5 | 214 | 2 | 199 | 4.88e-19 | 81.3 |
| Msa1346120 | MtrunA17_Chr1g0159191 | 45.652 | 92 | 38 | 3 | 1 | 91 | 1 | 81 | 2.06e-16 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1346120 | AT3G18690.1 | 42.534 | 221 | 103 | 9 | 1 | 213 | 1 | 205 | 7.44e-29 | 108 |
Find 93 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGTGGTGGTGGGCGGCGG+TGG | 0.220805 | tig0008210:+5684 | None:intergenic |
| AGTTGAAATGGGTCAGTTTC+CGG | 0.224402 | tig0008210:-5407 | Msa1346120:CDS |
| CTCCTGCTGGTTGGTGGTGG+TGG | 0.268245 | tig0008210:+5674 | None:intergenic |
| ACGGGGATGTGGAGGACTTT+AGG | 0.346487 | tig0008210:+5610 | None:intergenic |
| AACCACAAACTACGCCGTTT+TGG | 0.351186 | tig0008210:-5315 | Msa1346120:CDS |
| TGGGCGGCGGTGGGTGGAAG+CGG | 0.352213 | tig0008210:+5694 | None:intergenic |
| CCGCTGCCGGAGGGAAATTC+CGG | 0.355827 | tig0008210:+5814 | None:intergenic |
| TGATGAGTGGTTGTCGGTGC+TGG | 0.359553 | tig0008210:+5647 | None:intergenic |
| TGGTGGTGGGCGGCGGTGGG+TGG | 0.361199 | tig0008210:+5688 | None:intergenic |
| GTTGAAATGGGTCAGTTTCC+GGG | 0.370125 | tig0008210:-5406 | Msa1346120:CDS |
| GATTTAACGTGGTTGTTAGA+AGG | 0.373912 | tig0008210:-5430 | Msa1346120:CDS |
| CATCCCCGTCAGTGACTTCA+TGG | 0.377926 | tig0008210:-5596 | Msa1346120:CDS |
| TGAACCCTTTCTCTCTCTGT+TGG | 0.387390 | tig0008210:+5469 | None:intergenic |
| GGGAGGCTCCTGCTGGTTGG+TGG | 0.387529 | tig0008210:+5668 | None:intergenic |
| GGGAAATTCCGGTGGGTTCA+TGG | 0.387703 | tig0008210:+5825 | None:intergenic |
| ATCTTCGCCGCCGGAAGGTC+CGG | 0.405098 | tig0008210:+5555 | None:intergenic |
| TGGTTGGTGGTGGTGGGCGG+CGG | 0.409124 | tig0008210:+5681 | None:intergenic |
| GTTGTTAGAAGGAGTTGAAA+TGG | 0.414003 | tig0008210:-5419 | Msa1346120:CDS |
| AGGCTCCTGCTGGTTGGTGG+TGG | 0.420013 | tig0008210:+5671 | None:intergenic |
| GCGGCGGTGGGTGGAAGCGG+TGG | 0.429551 | tig0008210:+5697 | None:intergenic |
| CAAGTCCAACAGAGAGAGAA+AGG | 0.437655 | tig0008210:-5474 | Msa1346120:CDS |
| TCCTGCTGGTTGGTGGTGGT+GGG | 0.438363 | tig0008210:+5675 | None:intergenic |
| ACAATCCGGCGCGGTTTCTC+CGG | 0.438862 | tig0008210:-5524 | Msa1346120:CDS |
| GGCATGATACGAGTCCGTTA+TGG | 0.442093 | tig0008210:-5294 | Msa1346120:CDS |
| TGGTGGTGGTGGGCGGCGGT+GGG | 0.443945 | tig0008210:+5685 | None:intergenic |
| AGCTTTGTGGCGAGTCCGTC+GGG | 0.445038 | tig0008210:-5262 | Msa1346120:CDS |
| CGGTGCTGGGAGGCTCCTGC+TGG | 0.452909 | tig0008210:+5661 | None:intergenic |
| CGGCGTTGATGTTCCGCTGC+CGG | 0.454418 | tig0008210:+5801 | None:intergenic |
| TGCCAAAACGGCGTAGTTTG+TGG | 0.457897 | tig0008210:+5313 | None:intergenic |
| GAAAAGAATCCCTGTGATAT+CGG | 0.459892 | tig0008210:+5352 | None:intergenic |
| TAGCTTTGTGGCGAGTCCGT+CGG | 0.478356 | tig0008210:-5263 | Msa1346120:CDS |
| GCTGGGAGGCTCCTGCTGGT+TGG | 0.478572 | tig0008210:+5665 | None:intergenic |
| GATACGAGTCCGTTATGGTA+TGG | 0.479196 | tig0008210:-5289 | Msa1346120:CDS |
| TGTATTTGAAGCTCTCTCCT+AGG | 0.481120 | tig0008210:+5775 | None:intergenic |
| TGGGTGGAAGCGGTGGTTTG+CGG | 0.482673 | tig0008210:+5704 | None:intergenic |
| CCGGAATTTCCCTCCGGCAG+CGG | 0.484635 | tig0008210:-5814 | Msa1346120:CDS |
| TGAAGTCACTGACGGGGATG+TGG | 0.485162 | tig0008210:+5599 | None:intergenic |
| TTGTTAGAAGGAGTTGAAAT+GGG | 0.486521 | tig0008210:-5418 | Msa1346120:CDS |
| TGTTGGACTTGTTCTTTCGA+TGG | 0.497056 | tig0008210:+5486 | None:intergenic |
| GCCCACCACCACCAACCAGC+AGG | 0.501886 | tig0008210:-5676 | Msa1346120:CDS |
| TTGTTGACTCTGAGTGGTGG+TGG | 0.506817 | tig0008210:+5742 | None:intergenic |
| GGTGGTAGAGTCGCCGGTGC+CGG | 0.511212 | tig0008210:+5373 | None:intergenic |
| GTTTCCGGGGATATTATCTC+CGG | 0.519146 | tig0008210:-5392 | Msa1346120:CDS |
| GTGGAGGACTTTAGGAGATA+CGG | 0.519897 | tig0008210:+5618 | None:intergenic |
| TCGAAGATACTGAACAGATC+TGG | 0.522592 | tig0008210:+5202 | None:intergenic |
| ATACGAGTCCGTTATGGTAT+GGG | 0.523624 | tig0008210:-5288 | Msa1346120:CDS |
| GAAGATGCACCTCAACAATC+CGG | 0.524551 | tig0008210:-5538 | Msa1346120:CDS |
| CGTTGATGTTCCGCTGCCGG+AGG | 0.527495 | tig0008210:+5804 | None:intergenic |
| TTGAGGTGCATCTTCGCCGC+CGG | 0.529100 | tig0008210:+5546 | None:intergenic |
| GGTGCATCTTCGCCGCCGGA+AGG | 0.534976 | tig0008210:+5550 | None:intergenic |
| AACCCACCGGAATTTCCCTC+CGG | 0.538411 | tig0008210:-5820 | Msa1346120:CDS |
| GACTCTACCACCGATATCAC+AGG | 0.543319 | tig0008210:-5362 | Msa1346120:CDS |
| GACGTTGTTCAGCGTCTCAC+CGG | 0.548439 | tig0008210:-5574 | Msa1346120:CDS |
| CTGCCGGAGGGAAATTCCGG+TGG | 0.549143 | tig0008210:+5817 | None:intergenic |
| ACGTCCATGAAGTCACTGAC+GGG | 0.551581 | tig0008210:+5592 | None:intergenic |
| TGCTGGTTGGTGGTGGTGGG+CGG | 0.551915 | tig0008210:+5678 | None:intergenic |
| GATGAGTGGTTGTCGGTGCT+GGG | 0.559871 | tig0008210:+5648 | None:intergenic |
| AACAGATCTGGCGACGGCAA+CGG | 0.560786 | tig0008210:+5214 | None:intergenic |
| GTTGATGTTCCGCTGCCGGA+GGG | 0.570170 | tig0008210:+5805 | None:intergenic |
| ATGGAAGCAAGTCTCGCTGC+CGG | 0.572026 | tig0008210:+5505 | None:intergenic |
| GGGGATATTATCTCCGGCAC+CGG | 0.572298 | tig0008210:-5386 | Msa1346120:CDS |
| TTGAAATGGGTCAGTTTCCG+GGG | 0.577499 | tig0008210:-5405 | Msa1346120:CDS |
| ATGGTATGGGAATAGCTTTG+TGG | 0.577738 | tig0008210:-5275 | Msa1346120:CDS |
| GTTTGTGGTTCATTCATACC+AGG | 0.582026 | tig0008210:+5328 | None:intergenic |
| TCTTTGTTGACTCTGAGTGG+TGG | 0.582276 | tig0008210:+5739 | None:intergenic |
| AGGAGAGAGCTTCAAATACA+AGG | 0.585364 | tig0008210:-5772 | Msa1346120:CDS |
| TGAAGCTCTCTCCTAGGTGA+CGG | 0.588198 | tig0008210:+5781 | None:intergenic |
| GAACATCAACGCCGTCACCT+AGG | 0.589141 | tig0008210:-5792 | Msa1346120:CDS |
| GATTCTTTGTTGACTCTGAG+TGG | 0.590484 | tig0008210:+5736 | None:intergenic |
| AGTAGATGATGAGTGGTTGT+CGG | 0.597664 | tig0008210:+5641 | None:intergenic |
| AAGTCCAACAGAGAGAGAAA+GGG | 0.597702 | tig0008210:-5473 | Msa1346120:CDS |
| GGACTCGTATCATGCCAAAA+CGG | 0.599817 | tig0008210:+5301 | None:intergenic |
| CTTCTCCACCATGAACCCAC+CGG | 0.600190 | tig0008210:-5833 | None:intergenic |
| GAAACCGCGCCGGATTGTTG+AGG | 0.601659 | tig0008210:+5529 | None:intergenic |
| AAGCTATTCCCATACCATAA+CGG | 0.602409 | tig0008210:+5280 | None:intergenic |
| GGTGCCGGAGATAATATCCC+CGG | 0.604831 | tig0008210:+5388 | None:intergenic |
| GATATCGGTGGTAGAGTCGC+CGG | 0.611845 | tig0008210:+5367 | None:intergenic |
| AACGTCCATGAAGTCACTGA+CGG | 0.617242 | tig0008210:+5591 | None:intergenic |
| TGCCGGAGGGAAATTCCGGT+GGG | 0.619323 | tig0008210:+5818 | None:intergenic |
| CGACGGCAACGGCGAAACCA+CGG | 0.623882 | tig0008210:+5225 | None:intergenic |
| CGCTGCCGGAGAAACCGCGC+CGG | 0.624624 | tig0008210:+5519 | None:intergenic |
| GATACGGAGTAGATGATGAG+TGG | 0.625006 | tig0008210:+5634 | None:intergenic |
| AGTCACTGACGGGGATGTGG+AGG | 0.642383 | tig0008210:+5602 | None:intergenic |
| AAGAATCCCTGTGATATCGG+TGG | 0.667744 | tig0008210:+5355 | None:intergenic |
| CGTCCATGAAGTCACTGACG+GGG | 0.670039 | tig0008210:+5593 | None:intergenic |
| CTGTAGACGAAGATTTAACG+TGG | 0.678834 | tig0008210:-5441 | Msa1346120:CDS |
| ACTCTACCACCGATATCACA+GGG | 0.707328 | tig0008210:-5361 | Msa1346120:CDS |
| GAGTGGTTGTCGGTGCTGGG+AGG | 0.710917 | tig0008210:+5651 | None:intergenic |
| GGGTTTACTTTCAGCCACCG+TGG | 0.712654 | tig0008210:-5242 | Msa1346120:CDS |
| ATACTGAACAGATCTGGCGA+CGG | 0.715619 | tig0008210:+5208 | None:intergenic |
| GTGGCTGAAAGTAAACCCGA+CGG | 0.739615 | tig0008210:+5247 | None:intergenic |
| CGGCAACGGCGAAACCACGG+TGG | 0.747976 | tig0008210:+5228 | None:intergenic |
| TGCACCTCAACAATCCGGCG+CGG | 0.749515 | tig0008210:-5533 | Msa1346120:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TTGTTAGAAGGAGTTGAAAT+GGG | - | tig0008210:5603-5622 | Msa1346120:CDS | 30.0% | |
| GATTTAACGTGGTTGTTAGA+AGG | - | tig0008210:5591-5610 | Msa1346120:CDS | 35.0% | |
| GTTGTTAGAAGGAGTTGAAA+TGG | - | tig0008210:5602-5621 | Msa1346120:CDS | 35.0% | |
| GAAAAGAATCCCTGTGATAT+CGG | + | tig0008210:5672-5691 | None:intergenic | 35.0% | |
| AAGCTATTCCCATACCATAA+CGG | + | tig0008210:5744-5763 | None:intergenic | 35.0% | |
| ! | TGTATTTGAAGCTCTCTCCT+AGG | + | tig0008210:5249-5268 | None:intergenic | 40.0% |
| AGGAGAGAGCTTCAAATACA+AGG | - | tig0008210:5249-5268 | Msa1346120:CDS | 40.0% | |
| !! | GATTCTTTGTTGACTCTGAG+TGG | + | tig0008210:5288-5307 | None:intergenic | 40.0% |
| AGTAGATGATGAGTGGTTGT+CGG | + | tig0008210:5383-5402 | None:intergenic | 40.0% | |
| ! | TGTTGGACTTGTTCTTTCGA+TGG | + | tig0008210:5538-5557 | None:intergenic | 40.0% |
| AAGTCCAACAGAGAGAGAAA+GGG | - | tig0008210:5548-5567 | Msa1346120:CDS | 40.0% | |
| CTGTAGACGAAGATTTAACG+TGG | - | tig0008210:5580-5599 | Msa1346120:CDS | 40.0% | |
| AGTTGAAATGGGTCAGTTTC+CGG | - | tig0008210:5614-5633 | Msa1346120:CDS | 40.0% | |
| GTTTGTGGTTCATTCATACC+AGG | + | tig0008210:5696-5715 | None:intergenic | 40.0% | |
| ATACGAGTCCGTTATGGTAT+GGG | - | tig0008210:5733-5752 | Msa1346120:CDS | 40.0% | |
| ! | ATGGTATGGGAATAGCTTTG+TGG | - | tig0008210:5746-5765 | Msa1346120:CDS | 40.0% |
| TCGAAGATACTGAACAGATC+TGG | + | tig0008210:5822-5841 | None:intergenic | 40.0% | |
| !! | TCTTTGTTGACTCTGAGTGG+TGG | + | tig0008210:5285-5304 | None:intergenic | 45.0% |
| GATACGGAGTAGATGATGAG+TGG | + | tig0008210:5390-5409 | None:intergenic | 45.0% | |
| ! | GTGGAGGACTTTAGGAGATA+CGG | + | tig0008210:5406-5425 | None:intergenic | 45.0% |
| AACGTCCATGAAGTCACTGA+CGG | + | tig0008210:5433-5452 | None:intergenic | 45.0% | |
| GAAGATGCACCTCAACAATC+CGG | - | tig0008210:5483-5502 | Msa1346120:CDS | 45.0% | |
| CAAGTCCAACAGAGAGAGAA+AGG | - | tig0008210:5547-5566 | Msa1346120:CDS | 45.0% | |
| TGAACCCTTTCTCTCTCTGT+TGG | + | tig0008210:5555-5574 | None:intergenic | 45.0% | |
| GTTGAAATGGGTCAGTTTCC+GGG | - | tig0008210:5615-5634 | Msa1346120:CDS | 45.0% | |
| TTGAAATGGGTCAGTTTCCG+GGG | - | tig0008210:5616-5635 | Msa1346120:CDS | 45.0% | |
| GTTTCCGGGGATATTATCTC+CGG | - | tig0008210:5629-5648 | Msa1346120:CDS | 45.0% | |
| ACTCTACCACCGATATCACA+GGG | - | tig0008210:5660-5679 | Msa1346120:CDS | 45.0% | |
| AAGAATCCCTGTGATATCGG+TGG | + | tig0008210:5669-5688 | None:intergenic | 45.0% | |
| ! | TCACAGGGATTCTTTTCACC+TGG | - | tig0008210:5675-5694 | Msa1346120:CDS | 45.0% |
| ! | AACCACAAACTACGCCGTTT+TGG | - | tig0008210:5706-5725 | Msa1346120:CDS | 45.0% |
| GGACTCGTATCATGCCAAAA+CGG | + | tig0008210:5723-5742 | None:intergenic | 45.0% | |
| GATACGAGTCCGTTATGGTA+TGG | - | tig0008210:5732-5751 | Msa1346120:CDS | 45.0% | |
| ATACTGAACAGATCTGGCGA+CGG | + | tig0008210:5816-5835 | None:intergenic | 45.0% | |
| TGAAGCTCTCTCCTAGGTGA+CGG | + | tig0008210:5243-5262 | None:intergenic | 50.0% | |
| !! | TTGTTGACTCTGAGTGGTGG+TGG | + | tig0008210:5282-5301 | None:intergenic | 50.0% |
| ACGTCCATGAAGTCACTGAC+GGG | + | tig0008210:5432-5451 | None:intergenic | 50.0% | |
| GACTCTACCACCGATATCAC+AGG | - | tig0008210:5659-5678 | Msa1346120:CDS | 50.0% | |
| TGCCAAAACGGCGTAGTTTG+TGG | + | tig0008210:5711-5730 | None:intergenic | 50.0% | |
| GGCATGATACGAGTCCGTTA+TGG | - | tig0008210:5727-5746 | Msa1346120:CDS | 50.0% | |
| GTGGCTGAAAGTAAACCCGA+CGG | + | tig0008210:5777-5796 | None:intergenic | 50.0% | |
| AACCCACCGGAATTTCCCTC+CGG | - | tig0008210:5201-5220 | Msa1346120:CDS | 55.0% | |
| GAACATCAACGCCGTCACCT+AGG | - | tig0008210:5229-5248 | Msa1346120:CDS | 55.0% | |
| ! | GATGAGTGGTTGTCGGTGCT+GGG | + | tig0008210:5376-5395 | None:intergenic | 55.0% |
| TGATGAGTGGTTGTCGGTGC+TGG | + | tig0008210:5377-5396 | None:intergenic | 55.0% | |
| ACGGGGATGTGGAGGACTTT+AGG | + | tig0008210:5414-5433 | None:intergenic | 55.0% | |
| TGAAGTCACTGACGGGGATG+TGG | + | tig0008210:5425-5444 | None:intergenic | 55.0% | |
| CATCCCCGTCAGTGACTTCA+TGG | - | tig0008210:5425-5444 | Msa1346120:CDS | 55.0% | |
| CGTCCATGAAGTCACTGACG+GGG | + | tig0008210:5431-5450 | None:intergenic | 55.0% | |
| GACGTTGTTCAGCGTCTCAC+CGG | - | tig0008210:5447-5466 | Msa1346120:CDS | 55.0% | |
| ATGGAAGCAAGTCTCGCTGC+CGG | + | tig0008210:5519-5538 | None:intergenic | 55.0% | |
| ! | GGTGCCGGAGATAATATCCC+CGG | + | tig0008210:5636-5655 | None:intergenic | 55.0% |
| GGGGATATTATCTCCGGCAC+CGG | - | tig0008210:5635-5654 | Msa1346120:CDS | 55.0% | |
| GATATCGGTGGTAGAGTCGC+CGG | + | tig0008210:5657-5676 | None:intergenic | 55.0% | |
| !! | TAGCTTTGTGGCGAGTCCGT+CGG | - | tig0008210:5758-5777 | Msa1346120:CDS | 55.0% |
| GGGTTTACTTTCAGCCACCG+TGG | - | tig0008210:5779-5798 | Msa1346120:CDS | 55.0% | |
| AACAGATCTGGCGACGGCAA+CGG | + | tig0008210:5810-5829 | None:intergenic | 55.0% | |
| TGCCGGAGGGAAATTCCGGT+GGG | + | tig0008210:5206-5225 | None:intergenic | 60.0% | |
| GTTGATGTTCCGCTGCCGGA+GGG | + | tig0008210:5219-5238 | None:intergenic | 60.0% | |
| TGGGTGGAAGCGGTGGTTTG+CGG | + | tig0008210:5320-5339 | None:intergenic | 60.0% | |
| !! | TCCTGCTGGTTGGTGGTGGT+GGG | + | tig0008210:5349-5368 | None:intergenic | 60.0% |
| AGTCACTGACGGGGATGTGG+AGG | + | tig0008210:5422-5441 | None:intergenic | 60.0% | |
| TTGAGGTGCATCTTCGCCGC+CGG | + | tig0008210:5478-5497 | None:intergenic | 60.0% | |
| TGCACCTCAACAATCCGGCG+CGG | - | tig0008210:5488-5507 | Msa1346120:CDS | 60.0% | |
| GAAACCGCGCCGGATTGTTG+AGG | + | tig0008210:5495-5514 | None:intergenic | 60.0% | |
| ACAATCCGGCGCGGTTTCTC+CGG | - | tig0008210:5497-5516 | Msa1346120:CDS | 60.0% | |
| ! | AGCTTTGTGGCGAGTCCGTC+GGG | - | tig0008210:5759-5778 | Msa1346120:CDS | 60.0% |
| CTGCCGGAGGGAAATTCCGG+TGG | + | tig0008210:5207-5226 | None:intergenic | 65.0% | |
| CCGCTGCCGGAGGGAAATTC+CGG | + | tig0008210:5210-5229 | None:intergenic | 65.0% | |
| CCGGAATTTCCCTCCGGCAG+CGG | - | tig0008210:5207-5226 | Msa1346120:CDS | 65.0% | |
| CGTTGATGTTCCGCTGCCGG+AGG | + | tig0008210:5220-5239 | None:intergenic | 65.0% | |
| !! | CGGCGTTGATGTTCCGCTGC+CGG | + | tig0008210:5223-5242 | None:intergenic | 65.0% |
| !! | TGCTGGTTGGTGGTGGTGGG+CGG | + | tig0008210:5346-5365 | None:intergenic | 65.0% |
| !! | CTCCTGCTGGTTGGTGGTGG+TGG | + | tig0008210:5350-5369 | None:intergenic | 65.0% |
| !! | AGGCTCCTGCTGGTTGGTGG+TGG | + | tig0008210:5353-5372 | None:intergenic | 65.0% |
| !! | GAGTGGTTGTCGGTGCTGGG+AGG | + | tig0008210:5373-5392 | None:intergenic | 65.0% |
| CAGCGTCTCACCGGACCTTC+CGG | - | tig0008210:5456-5475 | Msa1346120:CDS | 65.0% | |
| ATCTTCGCCGCCGGAAGGTC+CGG | + | tig0008210:5469-5488 | None:intergenic | 65.0% | |
| CGACGGCAACGGCGAAACCA+CGG | + | tig0008210:5799-5818 | None:intergenic | 65.0% | |
| !! | TGGTTGGTGGTGGTGGGCGG+CGG | + | tig0008210:5343-5362 | None:intergenic | 70.0% |
| GCCCACCACCACCAACCAGC+AGG | - | tig0008210:5345-5364 | Msa1346120:CDS | 70.0% | |
| ! | GGGAGGCTCCTGCTGGTTGG+TGG | + | tig0008210:5356-5375 | None:intergenic | 70.0% |
| GCTGGGAGGCTCCTGCTGGT+TGG | + | tig0008210:5359-5378 | None:intergenic | 70.0% | |
| CGTCTCACCGGACCTTCCGG+CGG | - | tig0008210:5459-5478 | Msa1346120:CDS | 70.0% | |
| GGTGCATCTTCGCCGCCGGA+AGG | + | tig0008210:5474-5493 | None:intergenic | 70.0% | |
| GGTGGTAGAGTCGCCGGTGC+CGG | + | tig0008210:5651-5670 | None:intergenic | 70.0% | |
| CGGCAACGGCGAAACCACGG+TGG | + | tig0008210:5796-5815 | None:intergenic | 70.0% | |
| TGGGCGGCGGTGGGTGGAAG+CGG | + | tig0008210:5330-5349 | None:intergenic | 75.0% | |
| !! | TGGTGGTGGTGGGCGGCGGT+GGG | + | tig0008210:5339-5358 | None:intergenic | 75.0% |
| !! | TTGGTGGTGGTGGGCGGCGG+TGG | + | tig0008210:5340-5359 | None:intergenic | 75.0% |
| ! | CGGTGCTGGGAGGCTCCTGC+TGG | + | tig0008210:5363-5382 | None:intergenic | 75.0% |
| CGCTGCCGGAGAAACCGCGC+CGG | + | tig0008210:5505-5524 | None:intergenic | 75.0% | |
| ! | GCGGCGGTGGGTGGAAGCGG+TGG | + | tig0008210:5327-5346 | None:intergenic | 80.0% |
| !!! | TGGTGGTGGGCGGCGGTGGG+TGG | + | tig0008210:5336-5355 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0008210 | gene | 5198 | 5845 | 5198 | ID=Msa1346120;Name=Msa1346120 |
| tig0008210 | mRNA | 5198 | 5845 | 5198 | ID=Msa1346120-mRNA-1;Parent=Msa1346120;Name=Msa1346120-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|215 |
| tig0008210 | exon | 5198 | 5845 | 5198 | ID=Msa1346120-mRNA-1:exon:5355;Parent=Msa1346120-mRNA-1 |
| tig0008210 | CDS | 5198 | 5845 | 5198 | ID=Msa1346120-mRNA-1:cds;Parent=Msa1346120-mRNA-1 |
| Gene Sequence |
| Protein sequence |