Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295020 | AET03852.1 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 1.53e-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295020 | sp|Q9FWT2|UBC16_ARATH | 85.714 | 161 | 23 | 0 | 1 | 161 | 1 | 161 | 2.03e-98 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295020 | G7LD21 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 7.33e-117 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719490 | Msa1295020 | 0.805269 | 1.448246e-49 | -8.615850e-47 |
| Msa0769390 | Msa1295020 | -0.810877 | 9.263045e-51 | -8.615850e-47 |
| Msa0832370 | Msa1295020 | -0.802405 | 5.699123e-49 | -8.615850e-47 |
| Msa1257870 | Msa1295020 | 0.824764 | 6.762900e-54 | -8.615850e-47 |
| Msa1295020 | Msa1330000 | 0.982116 | 2.858554e-154 | -8.615850e-47 |
| Msa1295020 | Msa1346120 | 0.830039 | 3.675811e-55 | -8.615850e-47 |
| Msa0367140 | Msa1295020 | 0.816084 | 6.635508e-52 | -8.615850e-47 |
| Msa0459730 | Msa1295020 | 0.802661 | 5.047157e-49 | -8.615850e-47 |
| Msa1202000 | Msa1295020 | 0.975983 | 5.776911e-141 | -8.615850e-47 |
| Msa1207670 | Msa1295020 | 0.809025 | 2.320285e-50 | -8.615850e-47 |
| Msa0506530 | Msa1295020 | 0.878435 | 2.815804e-69 | -8.615850e-47 |
| Msa0576990 | Msa1295020 | 0.806804 | 6.884058e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295020 | MtrunA17_Chr8g0372391 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 1.41e-120 | 336 |
| Msa1295020 | MtrunA17_Chr5g0404931 | 88.199 | 161 | 19 | 0 | 1 | 161 | 1 | 161 | 3.40e-101 | 287 |
| Msa1295020 | MtrunA17_Chr7g0275361 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 1.82e-23 | 90.1 |
| Msa1295020 | MtrunA17_Chr8g0369311 | 40.708 | 113 | 65 | 2 | 14 | 125 | 56 | 167 | 4.41e-23 | 90.5 |
| Msa1295020 | MtrunA17_Chr1g0154011 | 41.071 | 112 | 64 | 2 | 15 | 125 | 1 | 111 | 1.35e-22 | 87.8 |
| Msa1295020 | MtrunA17_Chr4g0037011 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 2.49e-22 | 87.0 |
| Msa1295020 | MtrunA17_Chr3g0108261 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 3.15e-22 | 86.7 |
| Msa1295020 | MtrunA17_Chr5g0432831 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 1.34e-21 | 85.1 |
| Msa1295020 | MtrunA17_Chr8g0378601 | 34.821 | 112 | 71 | 2 | 16 | 126 | 23 | 133 | 1.01e-19 | 80.9 |
| Msa1295020 | MtrunA17_Chr8g0362321 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.14e-19 | 79.7 |
| Msa1295020 | MtrunA17_Chr4g0060351 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.65e-19 | 79.3 |
| Msa1295020 | MtrunA17_Chr4g0038891 | 37.037 | 108 | 66 | 2 | 19 | 125 | 36 | 142 | 2.27e-18 | 77.4 |
| Msa1295020 | MtrunA17_Chr2g0316201 | 37.615 | 109 | 66 | 2 | 19 | 126 | 9 | 116 | 2.94e-18 | 76.6 |
| Msa1295020 | MtrunA17_Chr5g0396451 | 36.111 | 108 | 67 | 2 | 19 | 125 | 36 | 142 | 5.15e-18 | 76.6 |
| Msa1295020 | MtrunA17_Chr2g0316211 | 36.697 | 109 | 67 | 2 | 19 | 126 | 9 | 116 | 6.53e-18 | 75.9 |
| Msa1295020 | MtrunA17_Chr1g0199951 | 38.938 | 113 | 60 | 3 | 17 | 124 | 43 | 151 | 9.10e-18 | 76.3 |
| Msa1295020 | MtrunA17_Chr3g0131871 | 37.190 | 121 | 69 | 5 | 19 | 135 | 6 | 123 | 3.74e-17 | 74.7 |
| Msa1295020 | MtrunA17_Chr3g0139901 | 35.135 | 111 | 67 | 3 | 19 | 125 | 7 | 116 | 2.19e-16 | 72.0 |
| Msa1295020 | MtrunA17_Chr4g0031181 | 35.714 | 112 | 56 | 3 | 30 | 126 | 19 | 129 | 2.95e-16 | 71.6 |
| Msa1295020 | MtrunA17_Chr2g0328001 | 31.206 | 141 | 69 | 5 | 30 | 143 | 19 | 158 | 9.93e-15 | 67.8 |
| Msa1295020 | MtrunA17_Chr5g0401831 | 33.884 | 121 | 71 | 3 | 12 | 124 | 1 | 120 | 1.21e-14 | 67.4 |
| Msa1295020 | MtrunA17_Chr4g0053191 | 33.884 | 121 | 71 | 3 | 12 | 124 | 1 | 120 | 2.07e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1295020 | AT1G75440.1 | 85.714 | 161 | 23 | 0 | 1 | 161 | 1 | 161 | 2.06e-99 | 283 |
| Msa1295020 | AT5G42990.1 | 86.335 | 161 | 22 | 0 | 1 | 161 | 1 | 161 | 2.57e-98 | 280 |
| Msa1295020 | AT1G45050.1 | 85.714 | 161 | 23 | 0 | 1 | 161 | 1 | 161 | 5.85e-98 | 280 |
| Msa1295020 | AT4G36410.1 | 78.882 | 161 | 34 | 0 | 1 | 161 | 1 | 161 | 1.31e-92 | 266 |
| Msa1295020 | AT1G45050.2 | 79.412 | 102 | 21 | 0 | 1 | 102 | 1 | 102 | 3.60e-59 | 180 |
| Msa1295020 | AT3G08690.2 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 1.05e-22 | 88.2 |
| Msa1295020 | AT3G08690.1 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 1.05e-22 | 88.2 |
| Msa1295020 | AT5G41700.4 | 38.938 | 113 | 66 | 2 | 15 | 125 | 1 | 112 | 4.96e-22 | 86.7 |
| Msa1295020 | AT5G53300.2 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 6.61e-22 | 86.3 |
| Msa1295020 | AT5G53300.4 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 6.61e-22 | 86.3 |
| Msa1295020 | AT5G53300.1 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 6.61e-22 | 86.3 |
| Msa1295020 | AT5G56150.1 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 8.46e-22 | 85.9 |
| Msa1295020 | AT2G16740.1 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 8.93e-22 | 85.9 |
| Msa1295020 | AT4G27960.1 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 1.48e-21 | 85.5 |
| Msa1295020 | AT5G41700.5 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 2.13e-21 | 85.1 |
| Msa1295020 | AT5G41700.2 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 2.13e-21 | 85.1 |
| Msa1295020 | AT5G41700.1 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 2.13e-21 | 85.1 |
| Msa1295020 | AT1G64230.2 | 37.500 | 112 | 68 | 2 | 15 | 125 | 1 | 111 | 2.40e-21 | 84.7 |
| Msa1295020 | AT1G64230.1 | 37.500 | 112 | 68 | 2 | 15 | 125 | 1 | 111 | 2.40e-21 | 84.7 |
| Msa1295020 | AT4G27960.2 | 36.752 | 117 | 72 | 2 | 10 | 125 | 26 | 141 | 2.94e-21 | 85.5 |
| Msa1295020 | AT1G64230.3 | 35.537 | 121 | 67 | 2 | 15 | 125 | 1 | 120 | 2.24e-20 | 82.8 |
| Msa1295020 | AT1G14400.1 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.36e-19 | 79.7 |
| Msa1295020 | AT1G14400.2 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.36e-19 | 79.7 |
| Msa1295020 | AT2G02760.1 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1295020 | AT2G02760.2 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1295020 | AT2G02760.4 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1295020 | AT2G02760.3 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1295020 | AT5G53300.3 | 38.835 | 103 | 61 | 2 | 15 | 116 | 1 | 102 | 4.62e-19 | 77.8 |
| Msa1295020 | AT5G56150.2 | 37.500 | 112 | 67 | 3 | 15 | 125 | 1 | 110 | 4.92e-19 | 77.8 |
| Msa1295020 | AT5G50870.1 | 37.778 | 135 | 74 | 6 | 15 | 142 | 2 | 133 | 6.93e-19 | 79.7 |
| Msa1295020 | AT5G41700.3 | 37.143 | 105 | 64 | 2 | 15 | 118 | 1 | 104 | 1.38e-18 | 77.8 |
| Msa1295020 | AT3G08700.2 | 36.283 | 113 | 69 | 2 | 15 | 125 | 1 | 112 | 3.69e-18 | 76.6 |
| Msa1295020 | AT3G08700.1 | 36.283 | 113 | 69 | 2 | 15 | 125 | 1 | 112 | 3.69e-18 | 76.6 |
| Msa1295020 | AT1G78870.2 | 37.615 | 109 | 66 | 2 | 19 | 126 | 9 | 116 | 3.72e-18 | 76.6 |
| Msa1295020 | AT5G50870.2 | 38.400 | 125 | 70 | 5 | 15 | 135 | 2 | 123 | 6.33e-18 | 77.4 |
| Msa1295020 | AT1G16890.2 | 36.697 | 109 | 67 | 2 | 19 | 126 | 9 | 116 | 1.94e-17 | 74.7 |
| Msa1295020 | AT3G13550.2 | 33.065 | 124 | 80 | 3 | 2 | 124 | 24 | 145 | 2.46e-17 | 75.1 |
| Msa1295020 | AT3G13550.1 | 33.065 | 124 | 80 | 3 | 2 | 124 | 24 | 145 | 2.55e-17 | 75.1 |
| Msa1295020 | AT1G16890.3 | 39.535 | 86 | 51 | 1 | 41 | 126 | 41 | 125 | 5.32e-17 | 73.9 |
| Msa1295020 | AT5G62540.1 | 38.182 | 110 | 66 | 2 | 16 | 124 | 5 | 113 | 6.05e-17 | 73.6 |
| Msa1295020 | AT3G55380.1 | 33.083 | 133 | 71 | 5 | 31 | 148 | 21 | 150 | 1.69e-16 | 72.8 |
| Msa1295020 | AT1G64230.5 | 37.931 | 87 | 53 | 1 | 39 | 125 | 68 | 153 | 2.62e-16 | 72.8 |
| Msa1295020 | AT1G64230.4 | 37.931 | 87 | 53 | 1 | 39 | 125 | 68 | 153 | 2.62e-16 | 72.8 |
| Msa1295020 | AT1G16890.1 | 41.772 | 79 | 45 | 1 | 48 | 126 | 6 | 83 | 2.83e-16 | 70.9 |
| Msa1295020 | AT1G78870.4 | 41.772 | 79 | 45 | 1 | 48 | 126 | 6 | 83 | 3.11e-16 | 70.9 |
| Msa1295020 | AT1G78870.3 | 36.190 | 105 | 65 | 2 | 19 | 122 | 9 | 112 | 3.60e-16 | 70.5 |
| Msa1295020 | AT5G25760.1 | 37.647 | 85 | 51 | 2 | 42 | 125 | 33 | 116 | 2.95e-15 | 69.3 |
| Msa1295020 | AT5G25760.2 | 37.647 | 85 | 51 | 2 | 42 | 125 | 33 | 116 | 2.95e-15 | 69.3 |
| Msa1295020 | AT3G20060.1 | 34.259 | 108 | 69 | 2 | 19 | 125 | 40 | 146 | 3.13e-15 | 69.7 |
| Msa1295020 | AT3G57870.1 | 31.915 | 141 | 86 | 4 | 13 | 145 | 3 | 141 | 3.42e-15 | 69.3 |
| Msa1295020 | AT5G59300.1 | 33.083 | 133 | 71 | 5 | 30 | 147 | 19 | 148 | 3.67e-15 | 69.3 |
| Msa1295020 | AT1G78870.1 | 47.692 | 65 | 33 | 1 | 62 | 126 | 21 | 84 | 6.90e-15 | 67.4 |
| Msa1295020 | AT3G46460.1 | 33.036 | 112 | 59 | 3 | 30 | 126 | 19 | 129 | 5.05e-14 | 66.2 |
| Msa1295020 | AT1G36340.2 | 37.662 | 77 | 47 | 1 | 40 | 116 | 33 | 108 | 1.31e-13 | 65.1 |
| Msa1295020 | AT1G36340.1 | 37.662 | 77 | 47 | 1 | 40 | 116 | 33 | 108 | 1.31e-13 | 65.1 |
| Msa1295020 | AT3G20060.2 | 36.471 | 85 | 53 | 1 | 41 | 125 | 18 | 101 | 1.64e-13 | 64.3 |
| Msa1295020 | AT3G24515.1 | 33.058 | 121 | 66 | 4 | 19 | 125 | 10 | 129 | 3.57e-13 | 66.2 |
| Msa1295020 | AT3G24515.3 | 34.737 | 95 | 57 | 2 | 35 | 125 | 61 | 154 | 4.13e-13 | 66.2 |
| Msa1295020 | AT1G50490.1 | 36.471 | 85 | 53 | 1 | 41 | 125 | 62 | 145 | 5.81e-13 | 63.9 |
| Msa1295020 | AT5G05080.2 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1295020 | AT5G05080.3 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1295020 | AT5G05080.1 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1295020 | AT5G05080.4 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1295020 | AT2G46030.4 | 34.375 | 96 | 61 | 2 | 39 | 133 | 28 | 122 | 1.47e-11 | 60.1 |
| Msa1295020 | AT2G46030.2 | 34.375 | 96 | 61 | 2 | 39 | 133 | 28 | 122 | 1.47e-11 | 60.1 |
| Msa1295020 | AT3G55380.2 | 31.250 | 112 | 59 | 4 | 31 | 125 | 21 | 131 | 1.86e-11 | 60.1 |
| Msa1295020 | AT2G46030.5 | 34.375 | 96 | 61 | 2 | 39 | 133 | 25 | 119 | 2.18e-11 | 59.7 |
| Msa1295020 | AT2G46030.1 | 34.375 | 96 | 61 | 2 | 39 | 133 | 25 | 119 | 2.18e-11 | 59.7 |
| Msa1295020 | AT2G46030.3 | 34.375 | 96 | 61 | 2 | 39 | 133 | 97 | 191 | 2.98e-11 | 60.1 |
Find 69 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGTATAATTCCAATTTAC+AGG | 0.252995 | 8_3:+53002466 | None:intergenic |
| CAGATATATTGTATGATTCT+TGG | 0.253321 | 8_3:-53002935 | Msa1295020:CDS |
| GAGATTTGCTAAGCGTTTAA+AGG | 0.262512 | 8_3:+53002488 | None:intergenic |
| TTAGCAAATCTCCTGTAAAT+TGG | 0.287060 | 8_3:-53002477 | Msa1295020:three_prime_UTR |
| TAGAAAGAAAAGCAATAAAA+AGG | 0.309566 | 8_3:+53002380 | None:intergenic |
| AAGCTCTTTCTGAAGCCTAT+TGG | 0.327124 | 8_3:+53006360 | None:intergenic |
| TATGCCCGTTGCTATAGATA+TGG | 0.337664 | 8_3:+53005198 | None:intergenic |
| AGAGGATTATCCTTTCAAAA+AGG | 0.343593 | 8_3:-53002553 | Msa1295020:three_prime_UTR |
| AGCAACGGGCATATTTGTTT+AGG | 0.346582 | 8_3:-53005188 | Msa1295020:intron |
| CAAGTTAAACACAATATTCC+AGG | 0.359877 | 8_3:+53002420 | None:intergenic |
| GCTTCCATTGGGTAGTGCTC+TGG | 0.361113 | 8_3:+53005337 | None:intergenic |
| TAACTTGCATGTCTGATAAC+TGG | 0.376605 | 8_3:-53002404 | Msa1295020:three_prime_UTR |
| TATAGATATGGGGATGCATT+GGG | 0.389000 | 8_3:+53005210 | None:intergenic |
| TGATGATAAAGTATAATAAC+TGG | 0.404464 | 8_3:-53002599 | Msa1295020:exon |
| GCAGGTCATATTTATGAATC+CGG | 0.407342 | 8_3:-53005234 | Msa1295020:intron |
| GAACCACCATCTTGTCTCCT+TGG | 0.413844 | 8_3:+53002624 | None:intergenic |
| TAATGAGACCTACAAGCTTC+AGG | 0.415036 | 8_3:-53005368 | Msa1295020:CDS |
| ACATAGCGGTCATTATCTTC+AGG | 0.421373 | 8_3:+53002673 | None:intergenic |
| ATACCTCATTTGATAGTATG+AGG | 0.431549 | 8_3:-53002450 | Msa1295020:three_prime_UTR |
| AGGTGGGTTATTGAAGTGAT+TGG | 0.437592 | 8_3:-53005412 | Msa1295020:CDS |
| GTTATTATACTTTATCATCA+TGG | 0.446022 | 8_3:+53002602 | None:intergenic |
| ATTGAAGTGATTGGAGCTCC+TGG | 0.452007 | 8_3:-53005403 | Msa1295020:CDS |
| ATGCCCGTTGCTATAGATAT+GGG | 0.454921 | 8_3:+53005199 | None:intergenic |
| CAATAGATTCACACCTTAGC+GGG | 0.456428 | 8_3:+53002852 | None:intergenic |
| CACACCTGTGGAGCTTCCAT+TGG | 0.457138 | 8_3:+53005325 | None:intergenic |
| TATGTAAAGAACTGTAGAAA+TGG | 0.460561 | 8_3:-53002655 | Msa1295020:CDS |
| GAAATCGACCTGAAGCTTGT+AGG | 0.464209 | 8_3:+53005360 | None:intergenic |
| AACCACCATCTTGTCTCCTT+GGG | 0.464987 | 8_3:+53002625 | None:intergenic |
| ATACGCTCTCTTTCTCTCTT+CGG | 0.473604 | 8_3:-53006559 | Msa1295020:five_prime_UTR |
| TTTCCTCATACTATCAAATG+AGG | 0.476076 | 8_3:+53002447 | None:intergenic |
| CTTCCATTGGGTAGTGCTCT+GGG | 0.477576 | 8_3:+53005338 | None:intergenic |
| GATAAATATCAAGTGGAGAA+AGG | 0.491535 | 8_3:-53002531 | Msa1295020:three_prime_UTR |
| TCAGTAAGATTGCCTCCAAT+AGG | 0.493969 | 8_3:-53006375 | Msa1295020:CDS |
| AGCGTATCGGTGACTGACTA+AGG | 0.498683 | 8_3:+53006575 | None:intergenic |
| ATCCCCATATCTATAGCAAC+GGG | 0.499127 | 8_3:-53005202 | Msa1295020:CDS |
| CTATAGATATGGGGATGCAT+TGG | 0.503027 | 8_3:+53005209 | None:intergenic |
| AACCTTGCGAGAGGAGTTTG+AGG | 0.504445 | 8_3:+53006479 | None:intergenic |
| TTCAGAAAGAGCTTGTTGAA+TGG | 0.507529 | 8_3:-53006351 | Msa1295020:CDS |
| AATTCACAAAACTAGAATAG+AGG | 0.513456 | 8_3:-53002571 | Msa1295020:three_prime_UTR |
| ACACCTGTGGAGCTTCCATT+GGG | 0.516280 | 8_3:+53005326 | None:intergenic |
| CTACCCAATGGAAGCTCCAC+AGG | 0.520734 | 8_3:-53005329 | Msa1295020:intron |
| CTCTTTCTGAAGCCTATTGG+AGG | 0.524946 | 8_3:+53006363 | None:intergenic |
| GCTCTCAAGCTCACCCGCTA+AGG | 0.526760 | 8_3:-53002865 | Msa1295020:intron |
| ATATGGGGATGCATTGGGGC+CGG | 0.528834 | 8_3:+53005215 | None:intergenic |
| TGGCAGATTAATCCTCCTGC+TGG | 0.536569 | 8_3:-53006331 | Msa1295020:CDS |
| ACTTTGTAGTTGAAACCAGC+AGG | 0.537627 | 8_3:+53006316 | None:intergenic |
| TTGAAGTGATTGGAGCTCCT+GGG | 0.553217 | 8_3:-53005402 | Msa1295020:CDS |
| GGAGTTTGAGGAGCTAGTCA+TGG | 0.555231 | 8_3:+53006491 | None:intergenic |
| ACAGAACTAACAGTCATGGC+AGG | 0.555931 | 8_3:+53002909 | None:intergenic |
| TCATTAGCATAAAGTGTCCC+AGG | 0.566179 | 8_3:+53005385 | None:intergenic |
| CATCCCCATATCTATAGCAA+CGG | 0.583782 | 8_3:-53005203 | Msa1295020:CDS |
| GCGCACACGAAAGGCACACA+TGG | 0.588846 | 8_3:+53002346 | None:intergenic |
| GATCTCCCAAGGAGACAAGA+TGG | 0.604293 | 8_3:-53002630 | Msa1295020:CDS |
| AAGAGAGAAAGAGAGCGTAT+CGG | 0.605002 | 8_3:+53006562 | None:intergenic |
| CTCCTCAAACTCCTCTCGCA+AGG | 0.605700 | 8_3:-53006481 | Msa1295020:intron |
| CAGAACTAACAGTCATGGCA+GGG | 0.607603 | 8_3:+53002910 | None:intergenic |
| ATAGTATGAGGAAACAAACC+TGG | 0.609062 | 8_3:-53002438 | Msa1295020:three_prime_UTR |
| TTTCCCAGAGCACTACCCAA+TGG | 0.620641 | 8_3:-53005341 | Msa1295020:CDS |
| GCATACAGAACTAACAGTCA+TGG | 0.628207 | 8_3:+53002905 | None:intergenic |
| TAGAAATGGAAGATCTCCCA+AGG | 0.637128 | 8_3:-53002641 | Msa1295020:CDS |
| AAGTCAGCGATAATCTCCAA+AGG | 0.650491 | 8_3:-53006297 | Msa1295020:intron |
| TGCCCGTTGCTATAGATATG+GGG | 0.651617 | 8_3:+53005200 | None:intergenic |
| ACAATAGATTCACACCTTAG+CGG | 0.657902 | 8_3:+53002851 | None:intergenic |
| TTCTACAGTTCTTTACATAG+CGG | 0.660849 | 8_3:+53002659 | None:intergenic |
| AGAACTAACAGTCATGGCAG+GGG | 0.663437 | 8_3:+53002911 | None:intergenic |
| GGAGAAACAAACCTTGCGAG+AGG | 0.668074 | 8_3:+53006470 | None:intergenic |
| TTGTAGTTGAAACCAGCAGG+AGG | 0.668493 | 8_3:+53006319 | None:intergenic |
| ATAGATATGGGGATGCATTG+GGG | 0.673293 | 8_3:+53005211 | None:intergenic |
| CTCCCAAGGAGACAAGATGG+TGG | 0.709505 | 8_3:-53002627 | Msa1295020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATCTAGATTATTTTTT+TGG | + | chr8_3:53004093-53004112 | None:intergenic | 10.0% |
| !! | CAACAAAATAGAATAAAAAA+AGG | + | chr8_3:53002515-53002534 | None:intergenic | 15.0% |
| !!! | TTTATTCGAATTTTTGAAAT+TGG | - | chr8_3:53002748-53002767 | Msa1295020:intron | 15.0% |
| !!! | ATTAGGTTTTTTGATTTTTT+TGG | - | chr8_3:53002834-53002853 | Msa1295020:intron | 15.0% |
| !! | ATTAATACAATTCAAATATG+TGG | - | chr8_3:53002918-53002937 | Msa1295020:CDS | 15.0% |
| !!! | ATCAAATTTTTATATCGATT+TGG | + | chr8_3:53003440-53003459 | None:intergenic | 15.0% |
| !!! | TCAAAATATCATTTTTCTTA+CGG | - | chr8_3:53003481-53003500 | Msa1295020:intron | 15.0% |
| !!! | TCAACAATATTTTCTATAAA+AGG | + | chr8_3:53004652-53004671 | None:intergenic | 15.0% |
| !! | ATAATAATTTCTCCAAATTT+AGG | + | chr8_3:53005150-53005169 | None:intergenic | 15.0% |
| !!! | ATTTTTCTAATATTAAGAGA+TGG | - | chr8_3:53005504-53005523 | Msa1295020:intron | 15.0% |
| !!! | AGTCAGTTTATTTTTTTATA+TGG | - | chr8_3:53005608-53005627 | Msa1295020:intron | 15.0% |
| !!! | AAGATAATTATTTTCAAAAC+AGG | + | chr8_3:53005658-53005677 | None:intergenic | 15.0% |
| !!! | TGTTTTGAAAATAATTATCT+TGG | - | chr8_3:53005657-53005676 | Msa1295020:intron | 15.0% |
| !! | AAATTGATATATAAAACCAT+TGG | + | chr8_3:53006215-53006234 | None:intergenic | 15.0% |
| !!! | AATTTTTGAAATTGGTGAAA+TGG | - | chr8_3:53002756-53002775 | Msa1295020:intron | 20.0% |
| !!! | ATTTTTGAAATTGGTGAAAT+GGG | - | chr8_3:53002757-53002776 | Msa1295020:intron | 20.0% |
| !! | AAAAAACAAAACTTGAAAAG+AGG | + | chr8_3:53002812-53002831 | None:intergenic | 20.0% |
| !!! | CAAGTTTTGTTTTTTAGATT+AGG | - | chr8_3:53002817-53002836 | Msa1295020:intron | 20.0% |
| !! | AAAAAAAACTGACATCAAAT+TGG | - | chr8_3:53002883-53002902 | Msa1295020:CDS | 20.0% |
| !! | GATGATTAATGAATATAACA+AGG | - | chr8_3:53002957-53002976 | Msa1295020:intron | 20.0% |
| !!! | TCATTTTCTCAGATTATTAT+TGG | + | chr8_3:53003071-53003090 | None:intergenic | 20.0% |
| !! | AAATATACACTTGAAAATTG+TGG | + | chr8_3:53003203-53003222 | None:intergenic | 20.0% |
| !!! | AACACAATTTTGATGATTAA+TGG | - | chr8_3:53003262-53003281 | Msa1295020:intron | 20.0% |
| !!! | AATTTTTATATCGATTTGGA+TGG | + | chr8_3:53003436-53003455 | None:intergenic | 20.0% |
| !!! | TTATTGACAGTTTGTTATTT+TGG | - | chr8_3:53003504-53003523 | Msa1295020:intron | 20.0% |
| !! | CATATTTATGATTAAGGATT+TGG | - | chr8_3:53003679-53003698 | Msa1295020:intron | 20.0% |
| !! | TAAAAACTGTTAGAAAAACA+TGG | - | chr8_3:53004398-53004417 | Msa1295020:intron | 20.0% |
| !! | AACTAAATTTATTCTCATTG+TGG | + | chr8_3:53004532-53004551 | None:intergenic | 20.0% |
| !! | TGAAACATCAATATTTCATT+TGG | + | chr8_3:53005428-53005447 | None:intergenic | 20.0% |
| !! | TTTGAAAATAATTATCTTGG+TGG | - | chr8_3:53005660-53005679 | Msa1295020:intron | 20.0% |
| !! | TAATCATCAAATTCACAAAA+TGG | + | chr8_3:53005805-53005824 | None:intergenic | 20.0% |
| !!! | ATTTTGTGAATTTGATGATT+AGG | - | chr8_3:53005804-53005823 | Msa1295020:intron | 20.0% |
| !! | TATTCTCTATTATTATGACA+AGG | + | chr8_3:53005838-53005857 | None:intergenic | 20.0% |
| !! | ATAGAGAATAATATTCTCAT+TGG | - | chr8_3:53005848-53005867 | Msa1295020:intron | 20.0% |
| !! | AATTATACCGAAAAAACAAA+AGG | + | chr8_3:53006134-53006153 | None:intergenic | 20.0% |
| !! | GTTATTATACTTTATCATCA+TGG | + | chr8_3:53006347-53006366 | None:intergenic | 20.0% |
| !! | TGATGATAAAGTATAATAAC+TGG | - | chr8_3:53006347-53006366 | Msa1295020:CDS | 20.0% |
| !!! | TGATATTTATCCTTTTTGAA+AGG | + | chr8_3:53006406-53006425 | None:intergenic | 20.0% |
| !! | TAGAAAGAAAAGCAATAAAA+AGG | + | chr8_3:53006569-53006588 | None:intergenic | 20.0% |
| ! | AAAAAAGGAAGAGATGAAAA+GGG | + | chr8_3:53002500-53002519 | None:intergenic | 25.0% |
| ! | AAAAAAAGGAAGAGATGAAA+AGG | + | chr8_3:53002501-53002520 | None:intergenic | 25.0% |
| !!! | AGCATTGATATATATACCTT+TGG | + | chr8_3:53002668-53002687 | None:intergenic | 25.0% |
| ! | AATATGTGGTTAATTACGTT+TGG | - | chr8_3:53002932-53002951 | Msa1295020:CDS | 25.0% |
| ! | TAATGAATACAACAAAGTGA+TGG | + | chr8_3:53003363-53003382 | None:intergenic | 25.0% |
| !!! | TTTGTTATTTTGGTTCTCAA+AGG | - | chr8_3:53003514-53003533 | Msa1295020:intron | 25.0% |
| ! | TACAGGCATATTTATGATTA+AGG | - | chr8_3:53003673-53003692 | Msa1295020:intron | 25.0% |
| ! | TTTATGATTAAGGATTTGGA+TGG | - | chr8_3:53003683-53003702 | Msa1295020:intron | 25.0% |
| ! | AATATCTCATTAGAGTTCAA+AGG | - | chr8_3:53003860-53003879 | Msa1295020:intron | 25.0% |
| ! | ATATCTCATTAGAGTTCAAA+GGG | - | chr8_3:53003861-53003880 | Msa1295020:intron | 25.0% |
| ! | TACTGCAACTTGAAATTAAT+GGG | - | chr8_3:53003958-53003977 | Msa1295020:intron | 25.0% |
| ! | TATTTCTTCATTGTTCATTG+TGG | - | chr8_3:53004334-53004353 | Msa1295020:intron | 25.0% |
| ! | AAATGACTTTGAATATCCAA+AGG | - | chr8_3:53004422-53004441 | Msa1295020:intron | 25.0% |
| ! | CTTCCTTTACCTAAAAAATT+GGG | + | chr8_3:53004756-53004775 | None:intergenic | 25.0% |
| ! | TCTTCCTTTACCTAAAAAAT+TGG | + | chr8_3:53004757-53004776 | None:intergenic | 25.0% |
| !! | ATATTAATGCTTTGATAGTC+TGG | - | chr8_3:53004967-53004986 | Msa1295020:intron | 25.0% |
| !! | AAATTGCAAACAAGATTTTC+AGG | + | chr8_3:53005072-53005091 | None:intergenic | 25.0% |
| ! | ATCAAAATCAAAATACATGG+TGG | + | chr8_3:53005215-53005234 | None:intergenic | 25.0% |
| ! | TGCATCAAAATCAAAATACA+TGG | + | chr8_3:53005218-53005237 | None:intergenic | 25.0% |
| ! | ATTTGAAGATATATCTTCCA+TGG | - | chr8_3:53005447-53005466 | Msa1295020:intron | 25.0% |
| ! | TCATAATATCTAGATGAGAA+GGG | + | chr8_3:53005580-53005599 | None:intergenic | 25.0% |
| ! | AATTTCGAGACAAAACTTAA+TGG | + | chr8_3:53005712-53005731 | None:intergenic | 25.0% |
| ! | ATCAAATTCACAAAATGGAA+AGG | + | chr8_3:53005800-53005819 | None:intergenic | 25.0% |
| ! | TGATCAATCATGTTATTACT+TGG | + | chr8_3:53005941-53005960 | None:intergenic | 25.0% |
| ! | AAGTAATAACATGATTGATC+AGG | - | chr8_3:53005940-53005959 | Msa1295020:intron | 25.0% |
| ! | AGTAATAACATGATTGATCA+GGG | - | chr8_3:53005941-53005960 | Msa1295020:intron | 25.0% |
| ! | CAGATATATTGTATGATTCT+TGG | - | chr8_3:53006011-53006030 | Msa1295020:intron | 25.0% |
| ! | ATCAATTTACTTAACAACTC+TGG | - | chr8_3:53006227-53006246 | Msa1295020:intron | 25.0% |
| ! | TATGTAAAGAACTGTAGAAA+TGG | - | chr8_3:53006291-53006310 | Msa1295020:intron | 25.0% |
| ! | AATTCACAAAACTAGAATAG+AGG | - | chr8_3:53006375-53006394 | Msa1295020:CDS | 25.0% |
| ! | CAAAAAGGATAAATATCAAG+TGG | - | chr8_3:53006408-53006427 | Msa1295020:intron | 25.0% |
| AAACTAAGGAAGAGATGAAT+TGG | + | chr8_3:53002544-53002563 | None:intergenic | 30.0% | |
| !! | TTACTGAGATTCTGAAACTA+AGG | + | chr8_3:53002558-53002577 | None:intergenic | 30.0% |
| ACATATATAACCACATGTGT+TGG | - | chr8_3:53003090-53003109 | Msa1295020:intron | 30.0% | |
| CATTCAAAATTGAGGTTAGA+TGG | + | chr8_3:53003173-53003192 | None:intergenic | 30.0% | |
| ! | TTAATGGATATGTGAACACT+TGG | - | chr8_3:53003278-53003297 | Msa1295020:intron | 30.0% |
| GTTAACAACATTCAAAATCG+CGG | - | chr8_3:53003309-53003328 | Msa1295020:intron | 30.0% | |
| !!! | TTATTTTGGTTCTCAAAGGT+GGG | - | chr8_3:53003518-53003537 | Msa1295020:intron | 30.0% |
| TGTAATAAGCCATTGGATTA+AGG | - | chr8_3:53003642-53003661 | Msa1295020:intron | 30.0% | |
| AACGAAAATCCTTAATCCAA+TGG | + | chr8_3:53003654-53003673 | None:intergenic | 30.0% | |
| ! | TGCTATTTACTTTGTTTCAG+AGG | - | chr8_3:53003790-53003809 | Msa1295020:intron | 30.0% |
| GTACTGCAACTTGAAATTAA+TGG | - | chr8_3:53003957-53003976 | Msa1295020:intron | 30.0% | |
| TTGAAATTAATGGGATGAAG+TGG | - | chr8_3:53003967-53003986 | Msa1295020:intron | 30.0% | |
| AGAAAGAGACAAAGTGAAAA+AGG | + | chr8_3:53004191-53004210 | None:intergenic | 30.0% | |
| ! | TTTTCACTTTGTCTCTTTCT+TGG | - | chr8_3:53004191-53004210 | Msa1295020:intron | 30.0% |
| TTGTATTCGTTAGCGTTTAT+TGG | - | chr8_3:53004246-53004265 | Msa1295020:intron | 30.0% | |
| TGTGAATATGATGACTTGAA+GGG | + | chr8_3:53004366-53004385 | None:intergenic | 30.0% | |
| ATGTGAATATGATGACTTGA+AGG | + | chr8_3:53004367-53004386 | None:intergenic | 30.0% | |
| TTGTTGAATCTCTACTTAGA+AGG | - | chr8_3:53004665-53004684 | Msa1295020:intron | 30.0% | |
| AATCTCTACTTAGAAGGTTT+GGG | - | chr8_3:53004671-53004690 | Msa1295020:intron | 30.0% | |
| !!! | TAGCCCAATTTTTTAGGTAA+AGG | - | chr8_3:53004750-53004769 | Msa1295020:intron | 30.0% |
| TTAGGTAAAGGAAGACTATT+TGG | - | chr8_3:53004762-53004781 | Msa1295020:intron | 30.0% | |
| AGAAACCATACAAATTTCTC+CGG | - | chr8_3:53005302-53005321 | Msa1295020:intron | 30.0% | |
| AAATTCCGGAGAAATTTGTA+TGG | + | chr8_3:53005310-53005329 | None:intergenic | 30.0% | |
| TCAACTACAAGCTAAAATTC+CGG | + | chr8_3:53005324-53005343 | None:intergenic | 30.0% | |
| TGTTTCTTCCTATCTATTCA+GGG | - | chr8_3:53005359-53005378 | Msa1295020:CDS | 30.0% | |
| CAATAAAATTTGACCAACCA+TGG | + | chr8_3:53005467-53005486 | None:intergenic | 30.0% | |
| TTCTATCTGTGAATTGTTAG+TGG | - | chr8_3:53005532-53005551 | Msa1295020:intron | 30.0% | |
| CATAATATCTAGATGAGAAG+GGG | + | chr8_3:53005579-53005598 | None:intergenic | 30.0% | |
| CTCATAATATCTAGATGAGA+AGG | + | chr8_3:53005581-53005600 | None:intergenic | 30.0% | |
| TCTCATCTAGATATTATGAG+TGG | - | chr8_3:53005581-53005600 | Msa1295020:intron | 30.0% | |
| ! | TATCTTGGTGGTTAATAATC+TGG | - | chr8_3:53005672-53005691 | Msa1295020:intron | 30.0% |
| !! | TGGATTCTTTTTGTTATGAG+AGG | - | chr8_3:53005868-53005887 | Msa1295020:intron | 30.0% |
| GAGGATCATTGTAATTTGAT+TGG | - | chr8_3:53005887-53005906 | Msa1295020:intron | 30.0% | |
| TTCTACAGTTCTTTACATAG+CGG | + | chr8_3:53006290-53006309 | None:intergenic | 30.0% | |
| AGAGGATTATCCTTTCAAAA+AGG | - | chr8_3:53006393-53006412 | Msa1295020:intron | 30.0% | |
| GATAAATATCAAGTGGAGAA+AGG | - | chr8_3:53006415-53006434 | Msa1295020:intron | 30.0% | |
| TTAGCAAATCTCCTGTAAAT+TGG | - | chr8_3:53006469-53006488 | Msa1295020:intron | 30.0% | |
| GAGGTATAATTCCAATTTAC+AGG | + | chr8_3:53006483-53006502 | None:intergenic | 30.0% | |
| ! | ATACCTCATTTGATAGTATG+AGG | - | chr8_3:53006496-53006515 | Msa1295020:exon | 30.0% |
| TTTCCTCATACTATCAAATG+AGG | + | chr8_3:53006502-53006521 | None:intergenic | 30.0% | |
| CAAGTTAAACACAATATTCC+AGG | + | chr8_3:53006529-53006548 | None:intergenic | 30.0% | |
| !! | TTCAGAAAGAGCTTGTTGAA+TGG | - | chr8_3:53002595-53002614 | Msa1295020:exon | 35.0% |
| !! | TGAAATGGGTTTTTCGCTAA+TGG | - | chr8_3:53002771-53002790 | Msa1295020:intron | 35.0% |
| !! | GAAATGGGTTTTTCGCTAAT+GGG | - | chr8_3:53002772-53002791 | Msa1295020:intron | 35.0% |
| ATGTGGTTAATTACGTTTGG+TGG | - | chr8_3:53002935-53002954 | Msa1295020:CDS | 35.0% | |
| TTAACCTTGAAGCACAAACA+AGG | - | chr8_3:53003013-53003032 | Msa1295020:intron | 35.0% | |
| GTCAGCAACATTCAAAATTG+AGG | + | chr8_3:53003181-53003200 | None:intergenic | 35.0% | |
| TGTATTCATTAACCATCCAC+TGG | - | chr8_3:53003372-53003391 | Msa1295020:intron | 35.0% | |
| !!! | GTTATTTTGGTTCTCAAAGG+TGG | - | chr8_3:53003517-53003536 | Msa1295020:intron | 35.0% |
| ! | GGATTAAGGATTTTCGTTAC+AGG | - | chr8_3:53003656-53003675 | Msa1295020:intron | 35.0% |
| GCAGGTCATATTTATGAATC+CGG | - | chr8_3:53003712-53003731 | Msa1295020:intron | 35.0% | |
| TATAGATATGGGGATGCATT+GGG | + | chr8_3:53003739-53003758 | None:intergenic | 35.0% | |
| AGAGGAGAACAAATCTTTAG+AGG | - | chr8_3:53003808-53003827 | Msa1295020:intron | 35.0% | |
| TCATTAGAGTTCAAAGGGAA+AGG | - | chr8_3:53003866-53003885 | Msa1295020:intron | 35.0% | |
| !! | TTCAAGTTGCAGTACAATAG+TGG | + | chr8_3:53003952-53003971 | None:intergenic | 35.0% |
| AGGTAACAAGAACATCTTAC+AGG | + | chr8_3:53004171-53004190 | None:intergenic | 35.0% | |
| ! | CTTTTCTGCCATTCATATTC+TGG | - | chr8_3:53004282-53004301 | Msa1295020:intron | 35.0% |
| ! | ATGAAGTGCCAGAATATGAA+TGG | + | chr8_3:53004293-53004312 | None:intergenic | 35.0% |
| TCTTCATTGTTCATTGTGGT+TGG | - | chr8_3:53004338-53004357 | Msa1295020:intron | 35.0% | |
| TCTGTTGCATACAACTTTGT+CGG | + | chr8_3:53004490-53004509 | None:intergenic | 35.0% | |
| TGGAAATACAAGGCGAATTA+AGG | - | chr8_3:53004583-53004602 | Msa1295020:intron | 35.0% | |
| ATACAAGGCGAATTAAGGTT+AGG | - | chr8_3:53004588-53004607 | Msa1295020:intron | 35.0% | |
| TTATTAGAGAGAGAGAGTTG+AGG | - | chr8_3:53004621-53004640 | Msa1295020:intron | 35.0% | |
| GAATCTCTACTTAGAAGGTT+TGG | - | chr8_3:53004670-53004689 | Msa1295020:intron | 35.0% | |
| ! | GTATGGAGAGCAAATTTTGA+TGG | - | chr8_3:53004723-53004742 | Msa1295020:intron | 35.0% |
| AACTATCAAGAAAGACCTTG+AGG | - | chr8_3:53004788-53004807 | Msa1295020:intron | 35.0% | |
| AAGAAAGACCTTGAGGTTAA+TGG | - | chr8_3:53004795-53004814 | Msa1295020:intron | 35.0% | |
| AACTCAAACCATTAACCTCA+AGG | + | chr8_3:53004806-53004825 | None:intergenic | 35.0% | |
| ATAGAACATTACAGCGTCTT+TGG | - | chr8_3:53004848-53004867 | Msa1295020:intron | 35.0% | |
| ! | AGTGGGATAAGACTTGATTT+TGG | - | chr8_3:53004893-53004912 | Msa1295020:intron | 35.0% |
| TTGGTTACTGTTGAATATGC+TGG | - | chr8_3:53004912-53004931 | Msa1295020:intron | 35.0% | |
| AGCATTAATATCTCCTTCTC+AGG | + | chr8_3:53004958-53004977 | None:intergenic | 35.0% | |
| !! | TAAGTGTCTTTGAAGTTGCA+AGG | - | chr8_3:53005124-53005143 | Msa1295020:intron | 35.0% |
| TTAGATGACTACGAATGGTT+GGG | + | chr8_3:53005192-53005211 | None:intergenic | 35.0% | |
| AAAGTTGTGTTCTTATCTGC+TGG | - | chr8_3:53005266-53005285 | Msa1295020:intron | 35.0% | |
| ! | CTGTTTCTTCCTATCTATTC+AGG | - | chr8_3:53005358-53005377 | Msa1295020:CDS | 35.0% |
| CAATTCATCCCTGAATAGAT+AGG | + | chr8_3:53005370-53005389 | None:intergenic | 35.0% | |
| CTATTCAGGGATGAATTGAA+TGG | - | chr8_3:53005372-53005391 | Msa1295020:CDS | 35.0% | |
| GAAGATATATCTTCCATGGT+TGG | - | chr8_3:53005451-53005470 | Msa1295020:intron | 35.0% | |
| TTTATATGGTAGCATGTAGC+AGG | - | chr8_3:53005622-53005641 | Msa1295020:intron | 35.0% | |
| TTATATGGTAGCATGTAGCA+GGG | - | chr8_3:53005623-53005642 | Msa1295020:intron | 35.0% | |
| !! | TTGGTTTTTGTGTGCTATAC+TGG | - | chr8_3:53005906-53005925 | Msa1295020:intron | 35.0% |
| ACAATAGATTCACACCTTAG+CGG | + | chr8_3:53006098-53006117 | None:intergenic | 35.0% | |
| !!! | TGCGTGTCCTTTTGTTTTTT+CGG | - | chr8_3:53006124-53006143 | Msa1295020:intron | 35.0% |
| !!! | GAAAGGCATTTTGAGAAACT+AGG | - | chr8_3:53006432-53006451 | Msa1295020:intron | 35.0% |
| !! | GAGATTTGCTAAGCGTTTAA+AGG | + | chr8_3:53006461-53006480 | None:intergenic | 35.0% |
| ATAGTATGAGGAAACAAACC+TGG | - | chr8_3:53006508-53006527 | Msa1295020:exon | 35.0% | |
| ! | TAACTTGCATGTCTGATAAC+TGG | - | chr8_3:53006542-53006561 | Msa1295020:five_prime_UTR | 35.0% |
| ! | AAGAGAGAAAGAGAGCGTAT+CGG | + | chr8_3:53002387-53002406 | None:intergenic | 40.0% |
| ATACGCTCTCTTTCTCTCTT+CGG | - | chr8_3:53002387-53002406 | Msa1295020:three_prime_UTR | 40.0% | |
| TCAGTAAGATTGCCTCCAAT+AGG | - | chr8_3:53002571-53002590 | Msa1295020:three_prime_UTR | 40.0% | |
| !! | AAGCTCTTTCTGAAGCCTAT+TGG | + | chr8_3:53002589-53002608 | None:intergenic | 40.0% |
| ACTTTGTAGTTGAAACCAGC+AGG | + | chr8_3:53002633-53002652 | None:intergenic | 40.0% | |
| AAGTCAGCGATAATCTCCAA+AGG | - | chr8_3:53002649-53002668 | Msa1295020:CDS | 40.0% | |
| !! | GGTTTTTCGCTAATGGGTAT+GGG | - | chr8_3:53002778-53002797 | Msa1295020:intron | 40.0% |
| ! | AAGTCCTTGTTTGTGCTTCA+AGG | + | chr8_3:53003020-53003039 | None:intergenic | 40.0% |
| TGAAGCACAAACAAGGACTT+TGG | - | chr8_3:53003020-53003039 | Msa1295020:intron | 40.0% | |
| ATGTGAACACTTGGATGTTG+TGG | - | chr8_3:53003287-53003306 | Msa1295020:intron | 40.0% | |
| AGTTAATCATGTCCAGTGGA+TGG | + | chr8_3:53003387-53003406 | None:intergenic | 40.0% | |
| ATGCAGTTAATCATGTCCAG+TGG | + | chr8_3:53003391-53003410 | None:intergenic | 40.0% | |
| !! | AGGTGGGTTATTGAAGTGAT+TGG | - | chr8_3:53003534-53003553 | Msa1295020:intron | 40.0% |
| ! | TCATTAGCATAAAGTGTCCC+AGG | + | chr8_3:53003564-53003583 | None:intergenic | 40.0% |
| TAATGAGACCTACAAGCTTC+AGG | - | chr8_3:53003578-53003597 | Msa1295020:intron | 40.0% | |
| AATGGCTTATTACACACCTG+TGG | + | chr8_3:53003636-53003655 | None:intergenic | 40.0% | |
| ACAGGTGTGTAATAAGCCAT+TGG | - | chr8_3:53003635-53003654 | Msa1295020:intron | 40.0% | |
| GGATTTGGATGGTTATTTGC+AGG | - | chr8_3:53003694-53003713 | Msa1295020:intron | 40.0% | |
| ATAGATATGGGGATGCATTG+GGG | + | chr8_3:53003738-53003757 | None:intergenic | 40.0% | |
| CTATAGATATGGGGATGCAT+TGG | + | chr8_3:53003740-53003759 | None:intergenic | 40.0% | |
| CATCCCCATATCTATAGCAA+CGG | - | chr8_3:53003743-53003762 | Msa1295020:intron | 40.0% | |
| ATCCCCATATCTATAGCAAC+GGG | - | chr8_3:53003744-53003763 | Msa1295020:intron | 40.0% | |
| ATGCCCGTTGCTATAGATAT+GGG | + | chr8_3:53003750-53003769 | None:intergenic | 40.0% | |
| TATGCCCGTTGCTATAGATA+TGG | + | chr8_3:53003751-53003770 | None:intergenic | 40.0% | |
| AGCAACGGGCATATTTGTTT+AGG | - | chr8_3:53003758-53003777 | Msa1295020:intron | 40.0% | |
| !! | ATAGTGGACATGTCACAGAA+TGG | + | chr8_3:53003936-53003955 | None:intergenic | 40.0% |
| TGAACTGTCGATGTCGAAAA+GGG | + | chr8_3:53004026-53004045 | None:intergenic | 40.0% | |
| ATGAACTGTCGATGTCGAAA+AGG | + | chr8_3:53004027-53004046 | None:intergenic | 40.0% | |
| TCACTTTGTCTCTTTCTTGG+TGG | - | chr8_3:53004194-53004213 | Msa1295020:intron | 40.0% | |
| CACTTTGTCTCTTTCTTGGT+GGG | - | chr8_3:53004195-53004214 | Msa1295020:intron | 40.0% | |
| !! | TTTAGCTTGAGCAATGCCTT+TGG | + | chr8_3:53004441-53004460 | None:intergenic | 40.0% |
| !! | TTGTATGCAACAGAGTGTTG+CGG | - | chr8_3:53004496-53004515 | Msa1295020:intron | 40.0% |
| !! | TGGAGAGCAAATTTTGATGG+AGG | - | chr8_3:53004726-53004745 | Msa1295020:intron | 40.0% |
| !! | GGAGAGCAAATTTTGATGGA+GGG | - | chr8_3:53004727-53004746 | Msa1295020:intron | 40.0% |
| ATTACAGCGTCTTTGGATCT+AGG | - | chr8_3:53004855-53004874 | Msa1295020:intron | 40.0% | |
| ! | TCAAGTCTTATCCCACTAGT+TGG | + | chr8_3:53004890-53004909 | None:intergenic | 40.0% |
| TGCTGGCACTATGAATTTGA+AGG | - | chr8_3:53004929-53004948 | Msa1295020:intron | 40.0% | |
| GCTGGCACTATGAATTTGAA+GGG | - | chr8_3:53004930-53004949 | Msa1295020:intron | 40.0% | |
| AATTTGAAGGGAACCTGAGA+AGG | - | chr8_3:53004942-53004961 | Msa1295020:intron | 40.0% | |
| GAAGTTGCAAGGCCTAAATT+TGG | - | chr8_3:53005135-53005154 | Msa1295020:intron | 40.0% | |
| GTTAGATGACTACGAATGGT+TGG | + | chr8_3:53005193-53005212 | None:intergenic | 40.0% | |
| TATATGGTAGCATGTAGCAG+GGG | - | chr8_3:53005624-53005643 | Msa1295020:intron | 40.0% | |
| GCATACAGAACTAACAGTCA+TGG | + | chr8_3:53006044-53006063 | None:intergenic | 40.0% | |
| CAATAGATTCACACCTTAGC+GGG | + | chr8_3:53006097-53006116 | None:intergenic | 40.0% | |
| TGCTGTGATGTATCATCCAA+TGG | - | chr8_3:53006196-53006215 | Msa1295020:intron | 40.0% | |
| CTTGATCTCTTCTACAGCAA+CGG | - | chr8_3:53006250-53006269 | Msa1295020:intron | 40.0% | |
| ACATAGCGGTCATTATCTTC+AGG | + | chr8_3:53006276-53006295 | None:intergenic | 40.0% | |
| TAGAAATGGAAGATCTCCCA+AGG | - | chr8_3:53006305-53006324 | Msa1295020:CDS | 40.0% | |
| !! | CTCTTTCTGAAGCCTATTGG+AGG | + | chr8_3:53002586-53002605 | None:intergenic | 45.0% |
| TTGTAGTTGAAACCAGCAGG+AGG | + | chr8_3:53002630-53002649 | None:intergenic | 45.0% | |
| !! | GGGTTTTTCGCTAATGGGTA+TGG | - | chr8_3:53002777-53002796 | Msa1295020:intron | 45.0% |
| TTTGGACACGACACAAACAC+AGG | - | chr8_3:53003038-53003057 | Msa1295020:intron | 45.0% | |
| ! | ATCGAAGGTGAAGGTGTGAT+CGG | + | chr8_3:53003129-53003148 | None:intergenic | 45.0% |
| ACACTACTGATCGAAGGTGA+AGG | + | chr8_3:53003138-53003157 | None:intergenic | 45.0% | |
| TCACCTTCGATCAGTAGTGT+CGG | - | chr8_3:53003138-53003157 | Msa1295020:intron | 45.0% | |
| CGCGGTTAATTCTGTTCTGT+TGG | - | chr8_3:53003327-53003346 | Msa1295020:intron | 45.0% | |
| ATTGAAGTGATTGGAGCTCC+TGG | - | chr8_3:53003543-53003562 | Msa1295020:intron | 45.0% | |
| TTGAAGTGATTGGAGCTCCT+GGG | - | chr8_3:53003544-53003563 | Msa1295020:intron | 45.0% | |
| GAAATCGACCTGAAGCTTGT+AGG | + | chr8_3:53003589-53003608 | None:intergenic | 45.0% | |
| TGCCCGTTGCTATAGATATG+GGG | + | chr8_3:53003749-53003768 | None:intergenic | 45.0% | |
| GAGTTCAAAGGGAAAGGTAG+TGG | - | chr8_3:53003872-53003891 | Msa1295020:intron | 45.0% | |
| GCAGAATAGTGAGCTGTCAT+TGG | - | chr8_3:53003989-53004008 | Msa1295020:intron | 45.0% | |
| TGTCGATGTCGAAAAGGGTA+CGG | + | chr8_3:53004021-53004040 | None:intergenic | 45.0% | |
| !! | TGTATGCAACAGAGTGTTGC+GGG | - | chr8_3:53004497-53004516 | Msa1295020:intron | 45.0% |
| GCCTTGTATTTCCACTCATG+GGG | + | chr8_3:53004577-53004596 | None:intergenic | 45.0% | |
| CGCCTTGTATTTCCACTCAT+GGG | + | chr8_3:53004578-53004597 | None:intergenic | 45.0% | |
| TCGCCTTGTATTTCCACTCA+TGG | + | chr8_3:53004579-53004598 | None:intergenic | 45.0% | |
| AGACGGTAGCTTCAGTAGTA+TGG | - | chr8_3:53004706-53004725 | Msa1295020:intron | 45.0% | |
| !!! | GGAGGGTAGCCCAATTTTTT+AGG | - | chr8_3:53004744-53004763 | Msa1295020:intron | 45.0% |
| GGTGGTTAGATGACTACGAA+TGG | + | chr8_3:53005197-53005216 | None:intergenic | 45.0% | |
| GTTGTGTTCTTATCTGCTGG+AGG | - | chr8_3:53005269-53005288 | Msa1295020:intron | 45.0% | |
| ATGTATCACCGATACTACCG+AGG | + | chr8_3:53005759-53005778 | None:intergenic | 45.0% | |
| AGAACTAACAGTCATGGCAG+GGG | + | chr8_3:53006038-53006057 | None:intergenic | 45.0% | |
| CAGAACTAACAGTCATGGCA+GGG | + | chr8_3:53006039-53006058 | None:intergenic | 45.0% | |
| ACAGAACTAACAGTCATGGC+AGG | + | chr8_3:53006040-53006059 | None:intergenic | 45.0% | |
| TACACATGCATGAATGCGTG+TGG | - | chr8_3:53006166-53006185 | Msa1295020:intron | 45.0% | |
| AACCACCATCTTGTCTCCTT+GGG | + | chr8_3:53006324-53006343 | None:intergenic | 45.0% | |
| ! | AGCGTATCGGTGACTGACTA+AGG | + | chr8_3:53002374-53002393 | None:intergenic | 50.0% |
| GGAGTTTGAGGAGCTAGTCA+TGG | + | chr8_3:53002458-53002477 | None:intergenic | 50.0% | |
| AACCTTGCGAGAGGAGTTTG+AGG | + | chr8_3:53002470-53002489 | None:intergenic | 50.0% | |
| GGAGAAACAAACCTTGCGAG+AGG | + | chr8_3:53002479-53002498 | None:intergenic | 50.0% | |
| TGGCAGATTAATCCTCCTGC+TGG | - | chr8_3:53002615-53002634 | Msa1295020:CDS | 50.0% | |
| ! | TTTCCCAGAGCACTACCCAA+TGG | - | chr8_3:53003605-53003624 | Msa1295020:intron | 50.0% |
| CTTCCATTGGGTAGTGCTCT+GGG | + | chr8_3:53003611-53003630 | None:intergenic | 50.0% | |
| ACACCTGTGGAGCTTCCATT+GGG | + | chr8_3:53003623-53003642 | None:intergenic | 50.0% | |
| GTGGACATGTCACAGAATGG+TGG | + | chr8_3:53003933-53003952 | None:intergenic | 50.0% | |
| GCCCCATGAGTGGAAATACA+AGG | - | chr8_3:53004573-53004592 | Msa1295020:intron | 50.0% | |
| GAAGGTTTGGGCATGTGTGA+AGG | - | chr8_3:53004683-53004702 | Msa1295020:intron | 50.0% | |
| TTGGGCATGTGTGAAGGAGA+CGG | - | chr8_3:53004689-53004708 | Msa1295020:intron | 50.0% | |
| CAGCGTCTTTGGATCTAGGT+AGG | - | chr8_3:53004859-53004878 | Msa1295020:intron | 50.0% | |
| AGGTAGGCAACTCCAACTAG+TGG | - | chr8_3:53004875-53004894 | Msa1295020:intron | 50.0% | |
| GGTAGGCAACTCCAACTAGT+GGG | - | chr8_3:53004876-53004895 | Msa1295020:intron | 50.0% | |
| GATAGTCTGGTGTGTGCACT+AGG | - | chr8_3:53004980-53004999 | Msa1295020:intron | 50.0% | |
| ! | AGGAGATGGAGAGAGCGTAA+TGG | + | chr8_3:53005739-53005758 | None:intergenic | 50.0% |
| TTACGCTCTCTCCATCTCCT+CGG | - | chr8_3:53005739-53005758 | Msa1295020:intron | 50.0% | |
| CTCCATCTCCTCGGTAGTAT+CGG | - | chr8_3:53005748-53005767 | Msa1295020:intron | 50.0% | |
| GATCTCCCAAGGAGACAAGA+TGG | - | chr8_3:53006316-53006335 | Msa1295020:CDS | 50.0% | |
| GAACCACCATCTTGTCTCCT+TGG | + | chr8_3:53006325-53006344 | None:intergenic | 50.0% | |
| CTCCTCAAACTCCTCTCGCA+AGG | - | chr8_3:53002465-53002484 | Msa1295020:three_prime_UTR | 55.0% | |
| GGGTCTCACACCAACACATG+TGG | + | chr8_3:53003103-53003122 | None:intergenic | 55.0% | |
| ! | GGTGAAGGTGTGATCGGTCA+GGG | + | chr8_3:53003123-53003142 | None:intergenic | 55.0% |
| ! | AGGTGAAGGTGTGATCGGTC+AGG | + | chr8_3:53003124-53003143 | None:intergenic | 55.0% |
| ! | GCACCGACACTACTGATCGA+AGG | + | chr8_3:53003144-53003163 | None:intergenic | 55.0% |
| GCTTCCATTGGGTAGTGCTC+TGG | + | chr8_3:53003612-53003631 | None:intergenic | 55.0% | |
| CTACCCAATGGAAGCTCCAC+AGG | - | chr8_3:53003617-53003636 | Msa1295020:intron | 55.0% | |
| CACACCTGTGGAGCTTCCAT+TGG | + | chr8_3:53003624-53003643 | None:intergenic | 55.0% | |
| ATATGGGGATGCATTGGGGC+CGG | + | chr8_3:53003734-53003753 | None:intergenic | 55.0% | |
| AGAATGCTGTGCCCCATGAG+TGG | - | chr8_3:53004563-53004582 | Msa1295020:intron | 55.0% | |
| CACCGATACTACCGAGGAGA+TGG | + | chr8_3:53005753-53005772 | None:intergenic | 55.0% | |
| CTCCCAAGGAGACAAGATGG+TGG | - | chr8_3:53006319-53006338 | Msa1295020:CDS | 55.0% | |
| GCTCTCAAGCTCACCCGCTA+AGG | - | chr8_3:53006081-53006100 | Msa1295020:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 53002355 | 53006613 | 53002355 | ID=Msa1295020;Name=Msa1295020 |
| chr8_3 | mRNA | 53002355 | 53006613 | 53002355 | ID=Msa1295020-mRNA-1;Parent=Msa1295020;Name=Msa1295020-mRNA-1;_AED=0.09;_eAED=0.09;_QI=102|0.8|0.83|1|1|1|6|251|161 |
| chr8_3 | exon | 53002355 | 53002701 | 53002355 | ID=Msa1295020-mRNA-1:exon:15149;Parent=Msa1295020-mRNA-1 |
| chr8_3 | exon | 53002866 | 53002954 | 53002866 | ID=Msa1295020-mRNA-1:exon:15148;Parent=Msa1295020-mRNA-1 |
| chr8_3 | exon | 53005189 | 53005252 | 53005189 | ID=Msa1295020-mRNA-1:exon:15147;Parent=Msa1295020-mRNA-1 |
| chr8_3 | exon | 53005330 | 53005432 | 53005330 | ID=Msa1295020-mRNA-1:exon:15146;Parent=Msa1295020-mRNA-1 |
| chr8_3 | exon | 53006298 | 53006401 | 53006298 | ID=Msa1295020-mRNA-1:exon:15145;Parent=Msa1295020-mRNA-1 |
| chr8_3 | exon | 53006482 | 53006613 | 53006482 | ID=Msa1295020-mRNA-1:exon:15144;Parent=Msa1295020-mRNA-1 |
| chr8_3 | five_prime_UTR | 53006512 | 53006613 | 53006512 | ID=Msa1295020-mRNA-1:five_prime_utr;Parent=Msa1295020-mRNA-1 |
| chr8_3 | CDS | 53006482 | 53006511 | 53006482 | ID=Msa1295020-mRNA-1:cds;Parent=Msa1295020-mRNA-1 |
| chr8_3 | CDS | 53006298 | 53006401 | 53006298 | ID=Msa1295020-mRNA-1:cds;Parent=Msa1295020-mRNA-1 |
| chr8_3 | CDS | 53005330 | 53005432 | 53005330 | ID=Msa1295020-mRNA-1:cds;Parent=Msa1295020-mRNA-1 |
| chr8_3 | CDS | 53005189 | 53005252 | 53005189 | ID=Msa1295020-mRNA-1:cds;Parent=Msa1295020-mRNA-1 |
| chr8_3 | CDS | 53002866 | 53002954 | 53002866 | ID=Msa1295020-mRNA-1:cds;Parent=Msa1295020-mRNA-1 |
| chr8_3 | CDS | 53002606 | 53002701 | 53002606 | ID=Msa1295020-mRNA-1:cds;Parent=Msa1295020-mRNA-1 |
| chr8_3 | three_prime_UTR | 53002355 | 53002605 | 53002355 | ID=Msa1295020-mRNA-1:three_prime_utr;Parent=Msa1295020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
