Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330000 | AET03852.1 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 1.53e-116 | 336 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330000 | sp|Q9FWT2|UBC16_ARATH | 85.714 | 161 | 23 | 0 | 1 | 161 | 1 | 161 | 2.03e-98 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330000 | G7LD21 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 7.33e-117 | 336 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1330000 | -0.820284 | 7.438307e-53 | -8.615850e-47 |
| Msa0101810 | Msa1330000 | 0.804579 | 2.018873e-49 | -8.615850e-47 |
| Msa0120020 | Msa1330000 | 0.802477 | 5.507624e-49 | -8.615850e-47 |
| Msa0120040 | Msa1330000 | 0.803366 | 3.607763e-49 | -8.615850e-47 |
| Msa0699920 | Msa1330000 | 0.800129 | 1.665610e-48 | -8.615850e-47 |
| Msa0719490 | Msa1330000 | 0.819343 | 1.220456e-52 | -8.615850e-47 |
| Msa0769390 | Msa1330000 | -0.818717 | 1.694093e-52 | -8.615850e-47 |
| Msa0777570 | Msa1330000 | 0.802783 | 4.762478e-49 | -8.615850e-47 |
| Msa0832370 | Msa1330000 | -0.820324 | 7.283158e-53 | -8.615850e-47 |
| Msa0140780 | Msa1330000 | -0.812815 | 3.506552e-51 | -8.615850e-47 |
| Msa0157290 | Msa1330000 | -0.820988 | 5.127135e-53 | -8.615850e-47 |
| Msa0200260 | Msa1330000 | -0.805157 | 1.528570e-49 | -8.615850e-47 |
| Msa0215320 | Msa1330000 | 0.819803 | 9.585568e-53 | -8.615850e-47 |
| Msa1228210 | Msa1330000 | -0.803701 | 3.074285e-49 | -8.615850e-47 |
| Msa1257870 | Msa1330000 | 0.818357 | 2.044372e-52 | -8.615850e-47 |
| Msa1271300 | Msa1330000 | -0.819373 | 1.201979e-52 | -8.615850e-47 |
| Msa1295020 | Msa1330000 | 0.982116 | 2.858554e-154 | -8.615850e-47 |
| Msa1296960 | Msa1330000 | 0.803420 | 3.515746e-49 | -8.615850e-47 |
| Msa1330000 | Msa1346120 | 0.840506 | 8.345507e-58 | -8.615850e-47 |
| Msa0367140 | Msa1330000 | 0.828395 | 9.206382e-55 | -8.615850e-47 |
| Msa0459730 | Msa1330000 | 0.821007 | 5.074943e-53 | -8.615850e-47 |
| Msa0465670 | Msa1330000 | 0.809112 | 2.222955e-50 | -8.615850e-47 |
| Msa1075220 | Msa1330000 | 0.811020 | 8.627446e-51 | -8.615850e-47 |
| Msa0243100 | Msa1330000 | -0.801469 | 8.875124e-49 | -8.615850e-47 |
| Msa1124680 | Msa1330000 | 0.813367 | 2.652702e-51 | -8.615850e-47 |
| Msa1144390 | Msa1330000 | -0.806521 | 7.900970e-50 | -8.615850e-47 |
| Msa1162550 | Msa1330000 | 0.809765 | 1.609308e-50 | -8.615850e-47 |
| Msa1202000 | Msa1330000 | 0.991193 | 2.290510e-186 | -8.615850e-47 |
| Msa1207670 | Msa1330000 | 0.805976 | 1.029326e-49 | -8.615850e-47 |
| Msa0506530 | Msa1330000 | 0.886505 | 3.225567e-72 | -8.615850e-47 |
| Msa0576990 | Msa1330000 | 0.815983 | 6.988310e-52 | -8.615850e-47 |
| Msa0880140 | Msa1330000 | -0.817937 | 2.544732e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330000 | MtrunA17_Chr8g0372391 | 99.379 | 161 | 1 | 0 | 1 | 161 | 1 | 161 | 1.41e-120 | 336 |
| Msa1330000 | MtrunA17_Chr5g0404931 | 88.199 | 161 | 19 | 0 | 1 | 161 | 1 | 161 | 3.40e-101 | 287 |
| Msa1330000 | MtrunA17_Chr7g0275361 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 1.82e-23 | 90.1 |
| Msa1330000 | MtrunA17_Chr8g0369311 | 40.708 | 113 | 65 | 2 | 14 | 125 | 56 | 167 | 4.41e-23 | 90.5 |
| Msa1330000 | MtrunA17_Chr1g0154011 | 41.071 | 112 | 64 | 2 | 15 | 125 | 1 | 111 | 1.35e-22 | 87.8 |
| Msa1330000 | MtrunA17_Chr4g0037011 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 2.49e-22 | 87.0 |
| Msa1330000 | MtrunA17_Chr3g0108261 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 3.15e-22 | 86.7 |
| Msa1330000 | MtrunA17_Chr5g0432831 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 1.34e-21 | 85.1 |
| Msa1330000 | MtrunA17_Chr8g0378601 | 34.821 | 112 | 71 | 2 | 16 | 126 | 23 | 133 | 1.01e-19 | 80.9 |
| Msa1330000 | MtrunA17_Chr8g0362321 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.14e-19 | 79.7 |
| Msa1330000 | MtrunA17_Chr4g0060351 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.65e-19 | 79.3 |
| Msa1330000 | MtrunA17_Chr4g0038891 | 37.037 | 108 | 66 | 2 | 19 | 125 | 36 | 142 | 2.27e-18 | 77.4 |
| Msa1330000 | MtrunA17_Chr2g0316201 | 37.615 | 109 | 66 | 2 | 19 | 126 | 9 | 116 | 2.94e-18 | 76.6 |
| Msa1330000 | MtrunA17_Chr5g0396451 | 36.111 | 108 | 67 | 2 | 19 | 125 | 36 | 142 | 5.15e-18 | 76.6 |
| Msa1330000 | MtrunA17_Chr2g0316211 | 36.697 | 109 | 67 | 2 | 19 | 126 | 9 | 116 | 6.53e-18 | 75.9 |
| Msa1330000 | MtrunA17_Chr1g0199951 | 38.938 | 113 | 60 | 3 | 17 | 124 | 43 | 151 | 9.10e-18 | 76.3 |
| Msa1330000 | MtrunA17_Chr3g0131871 | 37.190 | 121 | 69 | 5 | 19 | 135 | 6 | 123 | 3.74e-17 | 74.7 |
| Msa1330000 | MtrunA17_Chr3g0139901 | 35.135 | 111 | 67 | 3 | 19 | 125 | 7 | 116 | 2.19e-16 | 72.0 |
| Msa1330000 | MtrunA17_Chr4g0031181 | 35.714 | 112 | 56 | 3 | 30 | 126 | 19 | 129 | 2.95e-16 | 71.6 |
| Msa1330000 | MtrunA17_Chr2g0328001 | 31.206 | 141 | 69 | 5 | 30 | 143 | 19 | 158 | 9.93e-15 | 67.8 |
| Msa1330000 | MtrunA17_Chr5g0401831 | 33.884 | 121 | 71 | 3 | 12 | 124 | 1 | 120 | 1.21e-14 | 67.4 |
| Msa1330000 | MtrunA17_Chr4g0053191 | 33.884 | 121 | 71 | 3 | 12 | 124 | 1 | 120 | 2.07e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330000 | AT1G75440.1 | 85.714 | 161 | 23 | 0 | 1 | 161 | 1 | 161 | 2.06e-99 | 283 |
| Msa1330000 | AT5G42990.1 | 86.335 | 161 | 22 | 0 | 1 | 161 | 1 | 161 | 2.57e-98 | 280 |
| Msa1330000 | AT1G45050.1 | 85.714 | 161 | 23 | 0 | 1 | 161 | 1 | 161 | 5.85e-98 | 280 |
| Msa1330000 | AT4G36410.1 | 78.882 | 161 | 34 | 0 | 1 | 161 | 1 | 161 | 1.31e-92 | 266 |
| Msa1330000 | AT1G45050.2 | 79.412 | 102 | 21 | 0 | 1 | 102 | 1 | 102 | 3.60e-59 | 180 |
| Msa1330000 | AT3G08690.2 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 1.05e-22 | 88.2 |
| Msa1330000 | AT3G08690.1 | 40.179 | 112 | 65 | 2 | 15 | 125 | 1 | 111 | 1.05e-22 | 88.2 |
| Msa1330000 | AT5G41700.4 | 38.938 | 113 | 66 | 2 | 15 | 125 | 1 | 112 | 4.96e-22 | 86.7 |
| Msa1330000 | AT5G53300.2 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 6.61e-22 | 86.3 |
| Msa1330000 | AT5G53300.4 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 6.61e-22 | 86.3 |
| Msa1330000 | AT5G53300.1 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 6.61e-22 | 86.3 |
| Msa1330000 | AT5G56150.1 | 39.286 | 112 | 66 | 2 | 15 | 125 | 1 | 111 | 8.46e-22 | 85.9 |
| Msa1330000 | AT2G16740.1 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 8.93e-22 | 85.9 |
| Msa1330000 | AT4G27960.1 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 1.48e-21 | 85.5 |
| Msa1330000 | AT5G41700.5 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 2.13e-21 | 85.1 |
| Msa1330000 | AT5G41700.2 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 2.13e-21 | 85.1 |
| Msa1330000 | AT5G41700.1 | 38.393 | 112 | 67 | 2 | 15 | 125 | 1 | 111 | 2.13e-21 | 85.1 |
| Msa1330000 | AT1G64230.2 | 37.500 | 112 | 68 | 2 | 15 | 125 | 1 | 111 | 2.40e-21 | 84.7 |
| Msa1330000 | AT1G64230.1 | 37.500 | 112 | 68 | 2 | 15 | 125 | 1 | 111 | 2.40e-21 | 84.7 |
| Msa1330000 | AT4G27960.2 | 36.752 | 117 | 72 | 2 | 10 | 125 | 26 | 141 | 2.94e-21 | 85.5 |
| Msa1330000 | AT1G64230.3 | 35.537 | 121 | 67 | 2 | 15 | 125 | 1 | 120 | 2.24e-20 | 82.8 |
| Msa1330000 | AT1G14400.1 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.36e-19 | 79.7 |
| Msa1330000 | AT1G14400.2 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.36e-19 | 79.7 |
| Msa1330000 | AT2G02760.1 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1330000 | AT2G02760.2 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1330000 | AT2G02760.4 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1330000 | AT2G02760.3 | 37.719 | 114 | 69 | 2 | 12 | 124 | 1 | 113 | 2.63e-19 | 79.7 |
| Msa1330000 | AT5G53300.3 | 38.835 | 103 | 61 | 2 | 15 | 116 | 1 | 102 | 4.62e-19 | 77.8 |
| Msa1330000 | AT5G56150.2 | 37.500 | 112 | 67 | 3 | 15 | 125 | 1 | 110 | 4.92e-19 | 77.8 |
| Msa1330000 | AT5G50870.1 | 37.778 | 135 | 74 | 6 | 15 | 142 | 2 | 133 | 6.93e-19 | 79.7 |
| Msa1330000 | AT5G41700.3 | 37.143 | 105 | 64 | 2 | 15 | 118 | 1 | 104 | 1.38e-18 | 77.8 |
| Msa1330000 | AT3G08700.2 | 36.283 | 113 | 69 | 2 | 15 | 125 | 1 | 112 | 3.69e-18 | 76.6 |
| Msa1330000 | AT3G08700.1 | 36.283 | 113 | 69 | 2 | 15 | 125 | 1 | 112 | 3.69e-18 | 76.6 |
| Msa1330000 | AT1G78870.2 | 37.615 | 109 | 66 | 2 | 19 | 126 | 9 | 116 | 3.72e-18 | 76.6 |
| Msa1330000 | AT5G50870.2 | 38.400 | 125 | 70 | 5 | 15 | 135 | 2 | 123 | 6.33e-18 | 77.4 |
| Msa1330000 | AT1G16890.2 | 36.697 | 109 | 67 | 2 | 19 | 126 | 9 | 116 | 1.94e-17 | 74.7 |
| Msa1330000 | AT3G13550.2 | 33.065 | 124 | 80 | 3 | 2 | 124 | 24 | 145 | 2.46e-17 | 75.1 |
| Msa1330000 | AT3G13550.1 | 33.065 | 124 | 80 | 3 | 2 | 124 | 24 | 145 | 2.55e-17 | 75.1 |
| Msa1330000 | AT1G16890.3 | 39.535 | 86 | 51 | 1 | 41 | 126 | 41 | 125 | 5.32e-17 | 73.9 |
| Msa1330000 | AT5G62540.1 | 38.182 | 110 | 66 | 2 | 16 | 124 | 5 | 113 | 6.05e-17 | 73.6 |
| Msa1330000 | AT3G55380.1 | 33.083 | 133 | 71 | 5 | 31 | 148 | 21 | 150 | 1.69e-16 | 72.8 |
| Msa1330000 | AT1G64230.5 | 37.931 | 87 | 53 | 1 | 39 | 125 | 68 | 153 | 2.62e-16 | 72.8 |
| Msa1330000 | AT1G64230.4 | 37.931 | 87 | 53 | 1 | 39 | 125 | 68 | 153 | 2.62e-16 | 72.8 |
| Msa1330000 | AT1G16890.1 | 41.772 | 79 | 45 | 1 | 48 | 126 | 6 | 83 | 2.83e-16 | 70.9 |
| Msa1330000 | AT1G78870.4 | 41.772 | 79 | 45 | 1 | 48 | 126 | 6 | 83 | 3.11e-16 | 70.9 |
| Msa1330000 | AT1G78870.3 | 36.190 | 105 | 65 | 2 | 19 | 122 | 9 | 112 | 3.60e-16 | 70.5 |
| Msa1330000 | AT5G25760.1 | 37.647 | 85 | 51 | 2 | 42 | 125 | 33 | 116 | 2.95e-15 | 69.3 |
| Msa1330000 | AT5G25760.2 | 37.647 | 85 | 51 | 2 | 42 | 125 | 33 | 116 | 2.95e-15 | 69.3 |
| Msa1330000 | AT3G20060.1 | 34.259 | 108 | 69 | 2 | 19 | 125 | 40 | 146 | 3.13e-15 | 69.7 |
| Msa1330000 | AT3G57870.1 | 31.915 | 141 | 86 | 4 | 13 | 145 | 3 | 141 | 3.42e-15 | 69.3 |
| Msa1330000 | AT5G59300.1 | 33.083 | 133 | 71 | 5 | 30 | 147 | 19 | 148 | 3.67e-15 | 69.3 |
| Msa1330000 | AT1G78870.1 | 47.692 | 65 | 33 | 1 | 62 | 126 | 21 | 84 | 6.90e-15 | 67.4 |
| Msa1330000 | AT3G46460.1 | 33.036 | 112 | 59 | 3 | 30 | 126 | 19 | 129 | 5.05e-14 | 66.2 |
| Msa1330000 | AT1G36340.2 | 37.662 | 77 | 47 | 1 | 40 | 116 | 33 | 108 | 1.31e-13 | 65.1 |
| Msa1330000 | AT1G36340.1 | 37.662 | 77 | 47 | 1 | 40 | 116 | 33 | 108 | 1.31e-13 | 65.1 |
| Msa1330000 | AT3G20060.2 | 36.471 | 85 | 53 | 1 | 41 | 125 | 18 | 101 | 1.64e-13 | 64.3 |
| Msa1330000 | AT3G24515.1 | 33.058 | 121 | 66 | 4 | 19 | 125 | 10 | 129 | 3.57e-13 | 66.2 |
| Msa1330000 | AT3G24515.3 | 34.737 | 95 | 57 | 2 | 35 | 125 | 61 | 154 | 4.13e-13 | 66.2 |
| Msa1330000 | AT1G50490.1 | 36.471 | 85 | 53 | 1 | 41 | 125 | 62 | 145 | 5.81e-13 | 63.9 |
| Msa1330000 | AT5G05080.2 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1330000 | AT5G05080.3 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1330000 | AT5G05080.1 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1330000 | AT5G05080.4 | 27.703 | 148 | 96 | 4 | 7 | 144 | 2 | 148 | 7.82e-12 | 61.6 |
| Msa1330000 | AT2G46030.4 | 34.375 | 96 | 61 | 2 | 39 | 133 | 28 | 122 | 1.47e-11 | 60.1 |
| Msa1330000 | AT2G46030.2 | 34.375 | 96 | 61 | 2 | 39 | 133 | 28 | 122 | 1.47e-11 | 60.1 |
| Msa1330000 | AT3G55380.2 | 31.250 | 112 | 59 | 4 | 31 | 125 | 21 | 131 | 1.86e-11 | 60.1 |
| Msa1330000 | AT2G46030.5 | 34.375 | 96 | 61 | 2 | 39 | 133 | 25 | 119 | 2.18e-11 | 59.7 |
| Msa1330000 | AT2G46030.1 | 34.375 | 96 | 61 | 2 | 39 | 133 | 25 | 119 | 2.18e-11 | 59.7 |
| Msa1330000 | AT2G46030.3 | 34.375 | 96 | 61 | 2 | 39 | 133 | 97 | 191 | 2.98e-11 | 60.1 |
Find 69 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGTATAATTCCAATTTAC+AGG | 0.252995 | 8_4:+49034189 | None:intergenic |
| CAGATATATTGTATGATTCT+TGG | 0.253321 | 8_4:-49034658 | Msa1330000:CDS |
| GAGATTTGCTAAGCGTTTAA+AGG | 0.262512 | 8_4:+49034211 | None:intergenic |
| TTAGCAAATCTCCTGTAAAT+TGG | 0.287060 | 8_4:-49034200 | Msa1330000:three_prime_UTR |
| TAGAAAGAAATGCAATAAAA+AGG | 0.309566 | 8_4:+49034103 | None:intergenic |
| AAGCTCTTTCTGAAGCCTAT+TGG | 0.327124 | 8_4:+49038051 | None:intergenic |
| TATGCCCGTTGCTATAGATA+TGG | 0.337664 | 8_4:+49036888 | None:intergenic |
| AGAGGATTATCCTTTCAAAA+AGG | 0.343593 | 8_4:-49034276 | Msa1330000:three_prime_UTR |
| AGCAACGGGCATATTTGTTT+AGG | 0.346582 | 8_4:-49036878 | Msa1330000:intron |
| CAAGTTAAACACAATATTCC+AGG | 0.359877 | 8_4:+49034143 | None:intergenic |
| GCTTCCATTGGGTAGTGCTC+TGG | 0.361113 | 8_4:+49037027 | None:intergenic |
| TAACTTGCATGTCTGATAAC+TGG | 0.376605 | 8_4:-49034127 | Msa1330000:three_prime_UTR |
| TATAGATATGGGGATGCATT+GGG | 0.389000 | 8_4:+49036900 | None:intergenic |
| TGATGATAAAGTATAATAAC+TGG | 0.404464 | 8_4:-49034322 | Msa1330000:exon |
| GCAGGTCATATTTATGAATC+CGG | 0.407342 | 8_4:-49036924 | Msa1330000:intron |
| GAACCACCATCTTGTCTCCT+TGG | 0.413844 | 8_4:+49034347 | None:intergenic |
| TAATGAGACCTACAAGCTTC+AGG | 0.415036 | 8_4:-49037058 | Msa1330000:CDS |
| ACATAGCGGTCATTATCTTC+AGG | 0.421373 | 8_4:+49034396 | None:intergenic |
| ATACCTCATTTGATAGTATG+AGG | 0.431549 | 8_4:-49034173 | Msa1330000:three_prime_UTR |
| AGGTGGGTTATTGAAGTGAT+TGG | 0.437592 | 8_4:-49037102 | Msa1330000:CDS |
| GTTATTATACTTTATCATCA+TGG | 0.446022 | 8_4:+49034325 | None:intergenic |
| ATTGAAGTGATTGGAGCTCC+TGG | 0.452007 | 8_4:-49037093 | Msa1330000:CDS |
| ATGCCCGTTGCTATAGATAT+GGG | 0.454921 | 8_4:+49036889 | None:intergenic |
| CAATAGATTCACACCTTAGC+GGG | 0.456428 | 8_4:+49034575 | None:intergenic |
| CACACCTGTGGAGCTTCCAT+TGG | 0.457138 | 8_4:+49037015 | None:intergenic |
| TATGTAAAGAACTGTAGAAA+TGG | 0.460561 | 8_4:-49034378 | Msa1330000:CDS |
| GAAATCGACCTGAAGCTTGT+AGG | 0.464209 | 8_4:+49037050 | None:intergenic |
| AACCACCATCTTGTCTCCTT+GGG | 0.464987 | 8_4:+49034348 | None:intergenic |
| ATACGCTCTCTTTCTCTCTT+CGG | 0.473604 | 8_4:-49038245 | Msa1330000:five_prime_UTR |
| TTTCCTCATACTATCAAATG+AGG | 0.476076 | 8_4:+49034170 | None:intergenic |
| CTTCCATTGGGTAGTGCTCT+GGG | 0.477576 | 8_4:+49037028 | None:intergenic |
| GATAAATATCAAGTGGAGAA+AGG | 0.491535 | 8_4:-49034254 | Msa1330000:three_prime_UTR |
| TCAGTAAGATTGCCTCCAAT+AGG | 0.493969 | 8_4:-49038066 | Msa1330000:CDS |
| AGCGTATCGGTGACTGACTA+AGG | 0.498683 | 8_4:+49038261 | None:intergenic |
| ATCCCCATATCTATAGCAAC+GGG | 0.499127 | 8_4:-49036892 | Msa1330000:CDS |
| CTATAGATATGGGGATGCAT+TGG | 0.503027 | 8_4:+49036899 | None:intergenic |
| AACCTTGCGAGAGGAGTTTG+AGG | 0.504445 | 8_4:+49038171 | None:intergenic |
| TTCAGAAAGAGCTTGTTGAA+TGG | 0.507529 | 8_4:-49038042 | Msa1330000:CDS |
| AATTCACAAAACTAGAATAG+AGG | 0.513456 | 8_4:-49034294 | Msa1330000:three_prime_UTR |
| ACACCTGTGGAGCTTCCATT+GGG | 0.516280 | 8_4:+49037016 | None:intergenic |
| CTACCCAATGGAAGCTCCAC+AGG | 0.520734 | 8_4:-49037019 | Msa1330000:intron |
| CTCTTTCTGAAGCCTATTGG+AGG | 0.524946 | 8_4:+49038054 | None:intergenic |
| GCTCTCAAGCTCACCCGCTA+AGG | 0.526760 | 8_4:-49034588 | Msa1330000:intron |
| ATATGGGGATGCATTGGGGC+CGG | 0.528834 | 8_4:+49036905 | None:intergenic |
| TGGCAGATTAATCCTCCTGC+TGG | 0.536569 | 8_4:-49038022 | Msa1330000:CDS |
| ACTTTGTAGTTGAAACCAGC+AGG | 0.537627 | 8_4:+49038007 | None:intergenic |
| TTGAAGTGATTGGAGCTCCT+GGG | 0.553217 | 8_4:-49037092 | Msa1330000:CDS |
| GGAGTTTGAGGAGCTAGTCA+TGG | 0.555231 | 8_4:+49038183 | None:intergenic |
| ACAGAACTAACAGTCATGGC+AGG | 0.555931 | 8_4:+49034632 | None:intergenic |
| TCATTAGCATAAAGTGTCCC+AGG | 0.566179 | 8_4:+49037075 | None:intergenic |
| CATCCCCATATCTATAGCAA+CGG | 0.583782 | 8_4:-49036893 | Msa1330000:CDS |
| GCGCACACGAAAGGCACACA+TGG | 0.588846 | 8_4:+49034069 | None:intergenic |
| GATCTCCCAAGGAGACAAGA+TGG | 0.604293 | 8_4:-49034353 | Msa1330000:CDS |
| AAGAGAGAAAGAGAGCGTAT+CGG | 0.605002 | 8_4:+49038248 | None:intergenic |
| CTCCTCAAACTCCTCTCGCA+AGG | 0.605700 | 8_4:-49038173 | Msa1330000:intron |
| CAGAACTAACAGTCATGGCA+GGG | 0.607603 | 8_4:+49034633 | None:intergenic |
| ATAGTATGAGGAAACAAACC+TGG | 0.609062 | 8_4:-49034161 | Msa1330000:three_prime_UTR |
| TTTCCCAGAGCACTACCCAA+TGG | 0.620641 | 8_4:-49037031 | Msa1330000:CDS |
| GCATACAGAACTAACAGTCA+TGG | 0.628207 | 8_4:+49034628 | None:intergenic |
| TAGAAATGGAAGATCTCCCA+AGG | 0.637128 | 8_4:-49034364 | Msa1330000:CDS |
| AAGTCAGCGATAATCTCCAA+AGG | 0.650491 | 8_4:-49037988 | Msa1330000:intron |
| TGCCCGTTGCTATAGATATG+GGG | 0.651617 | 8_4:+49036890 | None:intergenic |
| ACAATAGATTCACACCTTAG+CGG | 0.657902 | 8_4:+49034574 | None:intergenic |
| TTCTACAGTTCTTTACATAG+CGG | 0.660849 | 8_4:+49034382 | None:intergenic |
| AGAACTAACAGTCATGGCAG+GGG | 0.663437 | 8_4:+49034634 | None:intergenic |
| GGAGAAACAAACCTTGCGAG+AGG | 0.668074 | 8_4:+49038162 | None:intergenic |
| TTGTAGTTGAAACCAGCAGG+AGG | 0.668493 | 8_4:+49038010 | None:intergenic |
| ATAGATATGGGGATGCATTG+GGG | 0.673293 | 8_4:+49036901 | None:intergenic |
| CTCCCAAGGAGACAAGATGG+TGG | 0.709505 | 8_4:-49034350 | Msa1330000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAATAGAATAAAAAAA+AGG | + | chr8_4:49034232-49034251 | None:intergenic | 10.0% |
| !!! | TTTATTCGAATTTTTGAAAT+TGG | - | chr8_4:49034465-49034484 | Msa1330000:intron | 15.0% |
| !!! | ATTAGGTTTTTTGATTTTTT+TGG | - | chr8_4:49034551-49034570 | Msa1330000:intron | 15.0% |
| !!! | ATCAAATTTTTATATCGATT+TGG | + | chr8_4:49035159-49035178 | None:intergenic | 15.0% |
| !!! | TCAAAATATCATTTTTCTTA+CGG | - | chr8_4:49035200-49035219 | Msa1330000:intron | 15.0% |
| !! | TAAAAATTGTTAGAAAAACA+TGG | - | chr8_4:49036117-49036136 | Msa1330000:intron | 15.0% |
| !!! | TCAACAATATTTTCTATAAA+AGG | + | chr8_4:49036371-49036390 | None:intergenic | 15.0% |
| !! | ATAATAATTTCTCCAAATTT+AGG | + | chr8_4:49036869-49036888 | None:intergenic | 15.0% |
| !!! | AGTCAGTTTATTTTTTTATA+TGG | - | chr8_4:49037303-49037322 | Msa1330000:intron | 15.0% |
| !!! | AAGATAATTATTTTCAAAAC+AGG | + | chr8_4:49037353-49037372 | None:intergenic | 15.0% |
| !!! | TGTTTTGAAAATAATTATCT+TGG | - | chr8_4:49037352-49037371 | Msa1330000:intron | 15.0% |
| !!! | AATTTTTGAAATTGGTGAAA+TGG | - | chr8_4:49034473-49034492 | Msa1330000:intron | 20.0% |
| !!! | ATTTTTGAAATTGGTGAAAT+GGG | - | chr8_4:49034474-49034493 | Msa1330000:intron | 20.0% |
| !! | AAAAAACAAAACTTGAAAAG+AGG | + | chr8_4:49034529-49034548 | None:intergenic | 20.0% |
| !!! | CAAGTTTTGTTTTTTAGATT+AGG | - | chr8_4:49034534-49034553 | Msa1330000:intron | 20.0% |
| !! | AAAAAAAACTGACATCAAAT+TGG | - | chr8_4:49034600-49034619 | Msa1330000:CDS | 20.0% |
| !! | GATGATTAATGAATATAACA+AGG | - | chr8_4:49034674-49034693 | Msa1330000:intron | 20.0% |
| !!! | TCATTTTCTCAGATTATTAT+TGG | + | chr8_4:49034788-49034807 | None:intergenic | 20.0% |
| !! | AAATATACACTTGAAAATTG+TGG | + | chr8_4:49034920-49034939 | None:intergenic | 20.0% |
| !!! | AACACAATTTTGATGATTAA+TGG | - | chr8_4:49034979-49034998 | Msa1330000:intron | 20.0% |
| !!! | AATTTTTATATCGATTTGGA+TGG | + | chr8_4:49035155-49035174 | None:intergenic | 20.0% |
| !!! | TTATTGACAGTTTGTTATTT+TGG | - | chr8_4:49035223-49035242 | Msa1330000:intron | 20.0% |
| !! | CATATTTATGATTAAGGATT+TGG | - | chr8_4:49035398-49035417 | Msa1330000:intron | 20.0% |
| !! | AACTAAATTTATTCTCATGT+TGG | + | chr8_4:49036251-49036270 | None:intergenic | 20.0% |
| !! | TGAAACATCAATATTTCATT+TGG | + | chr8_4:49037147-49037166 | None:intergenic | 20.0% |
| !! | TTTGAAAATAATTATCTTGG+TGG | - | chr8_4:49037355-49037374 | Msa1330000:intron | 20.0% |
| !! | TAATCATCAAATTCACAAAA+TGG | + | chr8_4:49037491-49037510 | None:intergenic | 20.0% |
| !!! | ATTTTGTGAATTTGATGATT+AGG | - | chr8_4:49037490-49037509 | Msa1330000:intron | 20.0% |
| !! | TATTCTCTATTATTATGACA+AGG | + | chr8_4:49037524-49037543 | None:intergenic | 20.0% |
| !! | ATAGAGAATAATATTCTCAT+TGG | - | chr8_4:49037534-49037553 | Msa1330000:intron | 20.0% |
| !! | AATTATACCGAAAAAACAAA+AGG | + | chr8_4:49037820-49037839 | None:intergenic | 20.0% |
| !!! | AAATTGATATCTAAAACCAT+TGG | + | chr8_4:49037901-49037920 | None:intergenic | 20.0% |
| !! | GTTATTATACTTTATCATCA+TGG | + | chr8_4:49038033-49038052 | None:intergenic | 20.0% |
| !! | TGATGATAAAGTATAATAAC+TGG | - | chr8_4:49038033-49038052 | Msa1330000:CDS | 20.0% |
| !!! | TGATATTTATCCTTTTTGAA+AGG | + | chr8_4:49038092-49038111 | None:intergenic | 20.0% |
| !! | TAGAAAGAAATGCAATAAAA+AGG | + | chr8_4:49038255-49038274 | None:intergenic | 20.0% |
| ! | AAAAAAGGAAGAGATGAAAA+GGG | + | chr8_4:49034217-49034236 | None:intergenic | 25.0% |
| ! | AAAAAAAGGAAGAGATGAAA+AGG | + | chr8_4:49034218-49034237 | None:intergenic | 25.0% |
| !!! | AGCATTGATATATATACCTT+TGG | + | chr8_4:49034386-49034405 | None:intergenic | 25.0% |
| ! | ATCAAATTGGACAAATTAGA+TGG | - | chr8_4:49034613-49034632 | Msa1330000:CDS | 25.0% |
| ! | GTTAATACAATTCAAATACG+TGG | - | chr8_4:49034635-49034654 | Msa1330000:CDS | 25.0% |
| ! | TAATGAATACAACAAAGTGA+TGG | + | chr8_4:49035082-49035101 | None:intergenic | 25.0% |
| !!! | TTTGTTATTTTGGTTCTCAA+AGG | - | chr8_4:49035233-49035252 | Msa1330000:intron | 25.0% |
| ! | TACAGGCATATTTATGATTA+AGG | - | chr8_4:49035392-49035411 | Msa1330000:intron | 25.0% |
| ! | TTTATGATTAAGGATTTGGA+TGG | - | chr8_4:49035402-49035421 | Msa1330000:intron | 25.0% |
| ! | ATAATCTCATTAGAGTTCAA+AGG | - | chr8_4:49035580-49035599 | Msa1330000:intron | 25.0% |
| ! | TAATCTCATTAGAGTTCAAA+GGG | - | chr8_4:49035581-49035600 | Msa1330000:intron | 25.0% |
| ! | TACTGCAACTTGAAATTAAT+GGG | - | chr8_4:49035678-49035697 | Msa1330000:intron | 25.0% |
| ! | AAATGACTTTGAATATCCAA+AGG | - | chr8_4:49036141-49036160 | Msa1330000:intron | 25.0% |
| ! | CTTCCTTTACCTAAAAAATT+GGG | + | chr8_4:49036475-49036494 | None:intergenic | 25.0% |
| ! | TCTTCCTTTACCTAAAAAAT+TGG | + | chr8_4:49036476-49036495 | None:intergenic | 25.0% |
| !! | ATATTAATGCTTTGATAGTC+TGG | - | chr8_4:49036686-49036705 | Msa1330000:intron | 25.0% |
| !! | AAATTGCAAACAAGATTTTC+AGG | + | chr8_4:49036791-49036810 | None:intergenic | 25.0% |
| ! | ATCAAAATCAAAATACATGG+TGG | + | chr8_4:49036934-49036953 | None:intergenic | 25.0% |
| ! | TGCATCAAAATCAAAATACA+TGG | + | chr8_4:49036937-49036956 | None:intergenic | 25.0% |
| ! | TCATAATATCTAGATGAGAA+GGG | + | chr8_4:49037275-49037294 | None:intergenic | 25.0% |
| ! | ATCAAATTCACAAAATGGAA+AGG | + | chr8_4:49037486-49037505 | None:intergenic | 25.0% |
| ! | GAAGATCATTGTAATTTGAT+TGG | - | chr8_4:49037573-49037592 | Msa1330000:intron | 25.0% |
| ! | TGATCAATCATGTTATTACT+TGG | + | chr8_4:49037627-49037646 | None:intergenic | 25.0% |
| ! | AAGTAATAACATGATTGATC+AGG | - | chr8_4:49037626-49037645 | Msa1330000:intron | 25.0% |
| ! | AGTAATAACATGATTGATCA+GGG | - | chr8_4:49037627-49037646 | Msa1330000:intron | 25.0% |
| ! | CAGATATATTGTATGATTCT+TGG | - | chr8_4:49037697-49037716 | Msa1330000:intron | 25.0% |
| ! | ATCAATTTACTTAACAACTC+TGG | - | chr8_4:49037913-49037932 | Msa1330000:intron | 25.0% |
| ! | TATGTAAAGAACTGTAGAAA+TGG | - | chr8_4:49037977-49037996 | Msa1330000:intron | 25.0% |
| ! | AATTCACAAAACTAGAATAG+AGG | - | chr8_4:49038061-49038080 | Msa1330000:CDS | 25.0% |
| ! | CAAAAAGGATAAATATCAAG+TGG | - | chr8_4:49038094-49038113 | Msa1330000:intron | 25.0% |
| AAACTAAGGAAGAGATGAAT+TGG | + | chr8_4:49034262-49034281 | None:intergenic | 30.0% | |
| !! | TTACTGAGATTCTGAAACTA+AGG | + | chr8_4:49034276-49034295 | None:intergenic | 30.0% |
| ACATATATAACCACATGTGT+TGG | - | chr8_4:49034807-49034826 | Msa1330000:intron | 30.0% | |
| CATTCAAAATTGAGGTTAGA+TGG | + | chr8_4:49034890-49034909 | None:intergenic | 30.0% | |
| ! | TTAATGGATATGTGAACACT+TGG | - | chr8_4:49034995-49035014 | Msa1330000:intron | 30.0% |
| AACAACATTCAAAATCATCG+TGG | - | chr8_4:49035029-49035048 | Msa1330000:intron | 30.0% | |
| !!! | TTATTTTGGTTCTCAAAGGT+GGG | - | chr8_4:49035237-49035256 | Msa1330000:intron | 30.0% |
| TGTAATAAGCCATTGGATTA+AGG | - | chr8_4:49035361-49035380 | Msa1330000:intron | 30.0% | |
| AACGAAAATCCTTAATCCAA+TGG | + | chr8_4:49035373-49035392 | None:intergenic | 30.0% | |
| ! | TGCTATTTACTTTGTTTCAG+AGG | - | chr8_4:49035509-49035528 | Msa1330000:intron | 30.0% |
| GTACTGCAACTTGAAATTAA+TGG | - | chr8_4:49035677-49035696 | Msa1330000:intron | 30.0% | |
| TTGAAATTAATGGGATGAAG+TGG | - | chr8_4:49035687-49035706 | Msa1330000:intron | 30.0% | |
| AGAAAGAGACAAAGTGAAAA+AGG | + | chr8_4:49035910-49035929 | None:intergenic | 30.0% | |
| ! | TTTTCACTTTGTCTCTTTCT+TGG | - | chr8_4:49035910-49035929 | Msa1330000:intron | 30.0% |
| TTGTATTCGTTAGCGTTTAT+TGG | - | chr8_4:49035965-49035984 | Msa1330000:intron | 30.0% | |
| TATTTCTTCGTTGTTCATTG+TGG | - | chr8_4:49036053-49036072 | Msa1330000:intron | 30.0% | |
| TGTGAATATGATGACTTGAA+GGG | + | chr8_4:49036085-49036104 | None:intergenic | 30.0% | |
| ATGTGAATATGATGACTTGA+AGG | + | chr8_4:49036086-49036105 | None:intergenic | 30.0% | |
| TTGTTGAATCTCTACTTAGA+AGG | - | chr8_4:49036384-49036403 | Msa1330000:intron | 30.0% | |
| AATCTCTACTTAGAAGGTTT+GGG | - | chr8_4:49036390-49036409 | Msa1330000:intron | 30.0% | |
| !!! | TAGCCCAATTTTTTAGGTAA+AGG | - | chr8_4:49036469-49036488 | Msa1330000:intron | 30.0% |
| TTAGGTAAAGGAAGACTATT+TGG | - | chr8_4:49036481-49036500 | Msa1330000:intron | 30.0% | |
| AAATTCCGGAGAAATTTGTA+TGG | + | chr8_4:49037029-49037048 | None:intergenic | 30.0% | |
| TCAACTACAAGCTAAAATTC+CGG | + | chr8_4:49037043-49037062 | None:intergenic | 30.0% | |
| TGTTTCTTCCTATCTATTCA+GGG | - | chr8_4:49037078-49037097 | Msa1330000:CDS | 30.0% | |
| ATTTGAAGATATATCGTCCA+TGG | - | chr8_4:49037166-49037185 | Msa1330000:intron | 30.0% | |
| CAATAAAATTTGACCAACCA+TGG | + | chr8_4:49037186-49037205 | None:intergenic | 30.0% | |
| TTCTATCTGTGAATTGTTAG+TGG | - | chr8_4:49037227-49037246 | Msa1330000:intron | 30.0% | |
| CATAATATCTAGATGAGAAG+GGG | + | chr8_4:49037274-49037293 | None:intergenic | 30.0% | |
| CTCATAATATCTAGATGAGA+AGG | + | chr8_4:49037276-49037295 | None:intergenic | 30.0% | |
| TCTCATCTAGATATTATGAG+TGG | - | chr8_4:49037276-49037295 | Msa1330000:intron | 30.0% | |
| ! | TATCTTGGTGGTTAATAATC+TGG | - | chr8_4:49037367-49037386 | Msa1330000:intron | 30.0% |
| !! | TTGGTTTTTGTGTACTATAC+TGG | - | chr8_4:49037592-49037611 | Msa1330000:intron | 30.0% |
| TTCTACAGTTCTTTACATAG+CGG | + | chr8_4:49037976-49037995 | None:intergenic | 30.0% | |
| AGAGGATTATCCTTTCAAAA+AGG | - | chr8_4:49038079-49038098 | Msa1330000:intron | 30.0% | |
| GATAAATATCAAGTGGAGAA+AGG | - | chr8_4:49038101-49038120 | Msa1330000:intron | 30.0% | |
| TTAGCAAATCTCCTGTAAAT+TGG | - | chr8_4:49038155-49038174 | Msa1330000:intron | 30.0% | |
| GAGGTATAATTCCAATTTAC+AGG | + | chr8_4:49038169-49038188 | None:intergenic | 30.0% | |
| ! | ATACCTCATTTGATAGTATG+AGG | - | chr8_4:49038182-49038201 | Msa1330000:CDS | 30.0% |
| TTTCCTCATACTATCAAATG+AGG | + | chr8_4:49038188-49038207 | None:intergenic | 30.0% | |
| CAAGTTAAACACAATATTCC+AGG | + | chr8_4:49038215-49038234 | None:intergenic | 30.0% | |
| !! | TTCAGAAAGAGCTTGTTGAA+TGG | - | chr8_4:49034313-49034332 | Msa1330000:exon | 35.0% |
| !! | TGAAATGGGTTTTTCGCTAA+TGG | - | chr8_4:49034488-49034507 | Msa1330000:intron | 35.0% |
| !! | GAAATGGGTTTTTCGCTAAT+GGG | - | chr8_4:49034489-49034508 | Msa1330000:intron | 35.0% |
| ACGTGGTTAATTACGTTTAG+TGG | - | chr8_4:49034652-49034671 | Msa1330000:CDS | 35.0% | |
| ! | TTAACCTAGAAGCACAAACA+AGG | - | chr8_4:49034730-49034749 | Msa1330000:intron | 35.0% |
| GTCAGCAACATTCAAAATTG+AGG | + | chr8_4:49034898-49034917 | None:intergenic | 35.0% | |
| TGTATTCATTAACCATCCAC+TGG | - | chr8_4:49035091-49035110 | Msa1330000:intron | 35.0% | |
| ATGTAGTTAATCATGTCCAG+TGG | + | chr8_4:49035110-49035129 | None:intergenic | 35.0% | |
| !!! | GTTATTTTGGTTCTCAAAGG+TGG | - | chr8_4:49035236-49035255 | Msa1330000:intron | 35.0% |
| ! | GGATTAAGGATTTTCGTTAC+AGG | - | chr8_4:49035375-49035394 | Msa1330000:intron | 35.0% |
| GCAGGTCATATTTATGAATC+CGG | - | chr8_4:49035431-49035450 | Msa1330000:intron | 35.0% | |
| TATAGATATGGGGATGCATT+GGG | + | chr8_4:49035458-49035477 | None:intergenic | 35.0% | |
| AGAGGAGAACAAATCTTTAG+AGG | - | chr8_4:49035527-49035546 | Msa1330000:intron | 35.0% | |
| TCATTAGAGTTCAAAGGGAA+AGG | - | chr8_4:49035586-49035605 | Msa1330000:intron | 35.0% | |
| !! | TTCAAGTTGCAGTACAATAG+TGG | + | chr8_4:49035672-49035691 | None:intergenic | 35.0% |
| AGGTAACAAGAACATCTTAC+AGG | + | chr8_4:49035890-49035909 | None:intergenic | 35.0% | |
| ! | CTTTTCTGCCATTCATATTC+TGG | - | chr8_4:49036001-49036020 | Msa1330000:intron | 35.0% |
| ! | ATGAAGTGCCAGAATATGAA+TGG | + | chr8_4:49036012-49036031 | None:intergenic | 35.0% |
| TCTGTTGCATACAACTTTGT+CGG | + | chr8_4:49036209-49036228 | None:intergenic | 35.0% | |
| TTATTAGAGAGAGAGAGTTG+AGG | - | chr8_4:49036340-49036359 | Msa1330000:intron | 35.0% | |
| GAATCTCTACTTAGAAGGTT+TGG | - | chr8_4:49036389-49036408 | Msa1330000:intron | 35.0% | |
| ! | GTATGGAGAGCAAATTTTGA+TGG | - | chr8_4:49036442-49036461 | Msa1330000:intron | 35.0% |
| AACTATCAAGAAAGACCTTG+AGG | - | chr8_4:49036507-49036526 | Msa1330000:intron | 35.0% | |
| AAGAAAGACCTTGAGGTTAA+TGG | - | chr8_4:49036514-49036533 | Msa1330000:intron | 35.0% | |
| AACTCAAACCATTAACCTCA+AGG | + | chr8_4:49036525-49036544 | None:intergenic | 35.0% | |
| ! | AGTGGGATAAGACTTGATTT+TGG | - | chr8_4:49036612-49036631 | Msa1330000:intron | 35.0% |
| TTGGTTACTGTTGAATATGC+TGG | - | chr8_4:49036631-49036650 | Msa1330000:intron | 35.0% | |
| AGCATTAATATCTCCTTCTC+AGG | + | chr8_4:49036677-49036696 | None:intergenic | 35.0% | |
| !! | TAAGTGTCTTTGAAGTTGCA+AGG | - | chr8_4:49036843-49036862 | Msa1330000:intron | 35.0% |
| TTAGATGACTACGAATGGTT+GGG | + | chr8_4:49036911-49036930 | None:intergenic | 35.0% | |
| AAAGTTGTGTTCTTATCTGC+TGG | - | chr8_4:49036985-49037004 | Msa1330000:intron | 35.0% | |
| GGAAACCATACAAATTTCTC+CGG | - | chr8_4:49037021-49037040 | Msa1330000:CDS | 35.0% | |
| ! | CTGTTTCTTCCTATCTATTC+AGG | - | chr8_4:49037077-49037096 | Msa1330000:CDS | 35.0% |
| CAATTCATCCCTGAATAGAT+AGG | + | chr8_4:49037089-49037108 | None:intergenic | 35.0% | |
| CTATTCAGGGATGAATTGAA+TGG | - | chr8_4:49037091-49037110 | Msa1330000:CDS | 35.0% | |
| TTTATATGGTAGCATGTAGC+AGG | - | chr8_4:49037317-49037336 | Msa1330000:intron | 35.0% | |
| TTATATGGTAGCATGTAGCA+GGG | - | chr8_4:49037318-49037337 | Msa1330000:intron | 35.0% | |
| ACAATAGATTCACACCTTAG+CGG | + | chr8_4:49037784-49037803 | None:intergenic | 35.0% | |
| !!! | TGCGTGTCCTTTTGTTTTTT+CGG | - | chr8_4:49037810-49037829 | Msa1330000:intron | 35.0% |
| !!! | GAAAGGCATTTTGAGAAACT+AGG | - | chr8_4:49038118-49038137 | Msa1330000:intron | 35.0% |
| !! | GAGATTTGCTAAGCGTTTAA+AGG | + | chr8_4:49038147-49038166 | None:intergenic | 35.0% |
| ATAGTATGAGGAAACAAACC+TGG | - | chr8_4:49038194-49038213 | Msa1330000:exon | 35.0% | |
| ! | TAACTTGCATGTCTGATAAC+TGG | - | chr8_4:49038228-49038247 | Msa1330000:five_prime_UTR | 35.0% |
| ! | AAGAGAGAAAGAGAGCGTAT+CGG | + | chr8_4:49034110-49034129 | None:intergenic | 40.0% |
| ATACGCTCTCTTTCTCTCTT+CGG | - | chr8_4:49034110-49034129 | Msa1330000:three_prime_UTR | 40.0% | |
| TCAGTAAGATTGCCTCCAAT+AGG | - | chr8_4:49034289-49034308 | Msa1330000:three_prime_UTR | 40.0% | |
| !! | AAGCTCTTTCTGAAGCCTAT+TGG | + | chr8_4:49034307-49034326 | None:intergenic | 40.0% |
| ACTTTGTAGTTGAAACCAGC+AGG | + | chr8_4:49034351-49034370 | None:intergenic | 40.0% | |
| AAGTCAGCGATAATCTCCAA+AGG | - | chr8_4:49034367-49034386 | Msa1330000:CDS | 40.0% | |
| !! | GGTTTTTCGCTAATGGGTAT+GGG | - | chr8_4:49034495-49034514 | Msa1330000:intron | 40.0% |
| ! | AAGTCCTTGTTTGTGCTTCT+AGG | + | chr8_4:49034737-49034756 | None:intergenic | 40.0% |
| ! | AGAAGCACAAACAAGGACTT+TGG | - | chr8_4:49034737-49034756 | Msa1330000:intron | 40.0% |
| ATGTGAACACTTGGATGTTG+TGG | - | chr8_4:49035004-49035023 | Msa1330000:intron | 40.0% | |
| AGTTAATCATGTCCAGTGGA+TGG | + | chr8_4:49035106-49035125 | None:intergenic | 40.0% | |
| !! | AGGTGGGTTATTGAAGTGAT+TGG | - | chr8_4:49035253-49035272 | Msa1330000:intron | 40.0% |
| ! | TCATTAGCATAAAGTGTCCC+AGG | + | chr8_4:49035283-49035302 | None:intergenic | 40.0% |
| TAATGAGACCTACAAGCTTC+AGG | - | chr8_4:49035297-49035316 | Msa1330000:intron | 40.0% | |
| AATGGCTTATTACACACCTG+TGG | + | chr8_4:49035355-49035374 | None:intergenic | 40.0% | |
| ACAGGTGTGTAATAAGCCAT+TGG | - | chr8_4:49035354-49035373 | Msa1330000:intron | 40.0% | |
| GGATTTGGATGGTTATTTGC+AGG | - | chr8_4:49035413-49035432 | Msa1330000:intron | 40.0% | |
| ATAGATATGGGGATGCATTG+GGG | + | chr8_4:49035457-49035476 | None:intergenic | 40.0% | |
| CTATAGATATGGGGATGCAT+TGG | + | chr8_4:49035459-49035478 | None:intergenic | 40.0% | |
| CATCCCCATATCTATAGCAA+CGG | - | chr8_4:49035462-49035481 | Msa1330000:intron | 40.0% | |
| ATCCCCATATCTATAGCAAC+GGG | - | chr8_4:49035463-49035482 | Msa1330000:intron | 40.0% | |
| ATGCCCGTTGCTATAGATAT+GGG | + | chr8_4:49035469-49035488 | None:intergenic | 40.0% | |
| TATGCCCGTTGCTATAGATA+TGG | + | chr8_4:49035470-49035489 | None:intergenic | 40.0% | |
| AGCAACGGGCATATTTGTTT+AGG | - | chr8_4:49035477-49035496 | Msa1330000:intron | 40.0% | |
| !! | ATAGTGGACATGTCACAGAA+TGG | + | chr8_4:49035656-49035675 | None:intergenic | 40.0% |
| GCAGAATAGTGAGCTATCAT+TGG | - | chr8_4:49035709-49035728 | Msa1330000:intron | 40.0% | |
| TGAACTGTCGATGTCGAAAA+GGG | + | chr8_4:49035746-49035765 | None:intergenic | 40.0% | |
| ATGAACTGTCGATGTCGAAA+AGG | + | chr8_4:49035747-49035766 | None:intergenic | 40.0% | |
| TCACTTTGTCTCTTTCTTGG+TGG | - | chr8_4:49035913-49035932 | Msa1330000:intron | 40.0% | |
| CACTTTGTCTCTTTCTTGGT+GGG | - | chr8_4:49035914-49035933 | Msa1330000:intron | 40.0% | |
| TCTTCGTTGTTCATTGTGGT+TGG | - | chr8_4:49036057-49036076 | Msa1330000:intron | 40.0% | |
| !! | TTTAGCTTGAGCAATGCCTT+TGG | + | chr8_4:49036160-49036179 | None:intergenic | 40.0% |
| !! | TTGTATGCAACAGAGTGTTG+CGG | - | chr8_4:49036215-49036234 | Msa1330000:intron | 40.0% |
| ATACAAGGCGAGTTAAGGTT+AGG | - | chr8_4:49036307-49036326 | Msa1330000:intron | 40.0% | |
| AGATGGTAGCTTCTGTAGTA+TGG | - | chr8_4:49036425-49036444 | Msa1330000:intron | 40.0% | |
| !! | TGGAGAGCAAATTTTGATGG+AGG | - | chr8_4:49036445-49036464 | Msa1330000:intron | 40.0% |
| !! | GGAGAGCAAATTTTGATGGA+GGG | - | chr8_4:49036446-49036465 | Msa1330000:intron | 40.0% |
| ATAGAACATTACAGCGTCGT+TGG | - | chr8_4:49036567-49036586 | Msa1330000:intron | 40.0% | |
| ! | TCAAGTCTTATCCCACTAGT+TGG | + | chr8_4:49036609-49036628 | None:intergenic | 40.0% |
| TGCTGGCACTATGAATTTGA+AGG | - | chr8_4:49036648-49036667 | Msa1330000:intron | 40.0% | |
| GCTGGCACTATGAATTTGAA+GGG | - | chr8_4:49036649-49036668 | Msa1330000:intron | 40.0% | |
| AATTTGAAGGGAACCTGAGA+AGG | - | chr8_4:49036661-49036680 | Msa1330000:intron | 40.0% | |
| GAAGTTGCAAGGCCTAAATT+TGG | - | chr8_4:49036854-49036873 | Msa1330000:intron | 40.0% | |
| GTTAGATGACTACGAATGGT+TGG | + | chr8_4:49036912-49036931 | None:intergenic | 40.0% | |
| GAAGATATATCGTCCATGGT+TGG | - | chr8_4:49037170-49037189 | Msa1330000:intron | 40.0% | |
| TATATGGTAGCATGTAGCAG+GGG | - | chr8_4:49037319-49037338 | Msa1330000:intron | 40.0% | |
| GCATACAGAACTAACAGTCA+TGG | + | chr8_4:49037730-49037749 | None:intergenic | 40.0% | |
| CAATAGATTCACACCTTAGC+GGG | + | chr8_4:49037783-49037802 | None:intergenic | 40.0% | |
| TGCTGTGATGTATCATCCAA+TGG | - | chr8_4:49037882-49037901 | Msa1330000:intron | 40.0% | |
| CTTGATCTCTTCTACAGCAA+CGG | - | chr8_4:49037936-49037955 | Msa1330000:intron | 40.0% | |
| ACATAGCGGTCATTATCTTC+AGG | + | chr8_4:49037962-49037981 | None:intergenic | 40.0% | |
| TAGAAATGGAAGATCTCCCA+AGG | - | chr8_4:49037991-49038010 | Msa1330000:CDS | 40.0% | |
| !! | CTCTTTCTGAAGCCTATTGG+AGG | + | chr8_4:49034304-49034323 | None:intergenic | 45.0% |
| TTGTAGTTGAAACCAGCAGG+AGG | + | chr8_4:49034348-49034367 | None:intergenic | 45.0% | |
| !! | GGGTTTTTCGCTAATGGGTA+TGG | - | chr8_4:49034494-49034513 | Msa1330000:intron | 45.0% |
| TTTGGACACGACACAAACAC+AGG | - | chr8_4:49034755-49034774 | Msa1330000:intron | 45.0% | |
| ! | ATCGAAGGTGAAGGTGTGAT+CGG | + | chr8_4:49034846-49034865 | None:intergenic | 45.0% |
| ACACTACTGATCGAAGGTGA+AGG | + | chr8_4:49034855-49034874 | None:intergenic | 45.0% | |
| TCACCTTCGATCAGTAGTGT+CGG | - | chr8_4:49034855-49034874 | Msa1330000:intron | 45.0% | |
| ATTGAAGTGATTGGAGCTCC+TGG | - | chr8_4:49035262-49035281 | Msa1330000:intron | 45.0% | |
| TTGAAGTGATTGGAGCTCCT+GGG | - | chr8_4:49035263-49035282 | Msa1330000:intron | 45.0% | |
| GAAATCGACCTGAAGCTTGT+AGG | + | chr8_4:49035308-49035327 | None:intergenic | 45.0% | |
| TGCCCGTTGCTATAGATATG+GGG | + | chr8_4:49035468-49035487 | None:intergenic | 45.0% | |
| GAGTTCAAAGGGAAAGGTAG+TGG | - | chr8_4:49035592-49035611 | Msa1330000:intron | 45.0% | |
| TGTCGATGTCGAAAAGGGTA+CGG | + | chr8_4:49035741-49035760 | None:intergenic | 45.0% | |
| !! | TGTATGCAACAGAGTGTTGC+GGG | - | chr8_4:49036216-49036235 | Msa1330000:intron | 45.0% |
| GGGAAATACAAGGCGAGTTA+AGG | - | chr8_4:49036302-49036321 | Msa1330000:intron | 45.0% | |
| !!! | GGAGGGTAGCCCAATTTTTT+AGG | - | chr8_4:49036463-49036482 | Msa1330000:intron | 45.0% |
| ATTACAGCGTCGTTGGATCT+AGG | - | chr8_4:49036574-49036593 | Msa1330000:intron | 45.0% | |
| GGTGGTTAGATGACTACGAA+TGG | + | chr8_4:49036916-49036935 | None:intergenic | 45.0% | |
| GTTGTGTTCTTATCTGCTGG+AGG | - | chr8_4:49036988-49037007 | Msa1330000:intron | 45.0% | |
| !! | TCTGCTGGAGGTATTACACT+CGG | - | chr8_4:49037000-49037019 | Msa1330000:intron | 45.0% |
| ATGTATCACCGATACTACCG+AGG | + | chr8_4:49037445-49037464 | None:intergenic | 45.0% | |
| AGAACTAACAGTCATGGCAG+GGG | + | chr8_4:49037724-49037743 | None:intergenic | 45.0% | |
| CAGAACTAACAGTCATGGCA+GGG | + | chr8_4:49037725-49037744 | None:intergenic | 45.0% | |
| ACAGAACTAACAGTCATGGC+AGG | + | chr8_4:49037726-49037745 | None:intergenic | 45.0% | |
| TACACATGCATGAATGCGTG+TGG | - | chr8_4:49037852-49037871 | Msa1330000:intron | 45.0% | |
| AACCACCATCTTGTCTCCTT+GGG | + | chr8_4:49038010-49038029 | None:intergenic | 45.0% | |
| !!! | TTTTAATATAGATTATTTTT+TGG | + | chr8_4:49035813-49035832 | None:intergenic | 5.0% |
| ! | AGCGTATCGGTGACTGACTA+AGG | + | chr8_4:49034097-49034116 | None:intergenic | 50.0% |
| GGAGTTTGAGGAGCTAGTCA+TGG | + | chr8_4:49034175-49034194 | None:intergenic | 50.0% | |
| AACCTTGCGAGAGGAGTTTG+AGG | + | chr8_4:49034187-49034206 | None:intergenic | 50.0% | |
| GGAGAAACAAACCTTGCGAG+AGG | + | chr8_4:49034196-49034215 | None:intergenic | 50.0% | |
| TGGCAGATTAATCCTCCTGC+TGG | - | chr8_4:49034333-49034352 | Msa1330000:CDS | 50.0% | |
| GTGTCTCACACCAACACATG+TGG | + | chr8_4:49034820-49034839 | None:intergenic | 50.0% | |
| ! | TTTCCCAGAGCACTACCCAA+TGG | - | chr8_4:49035324-49035343 | Msa1330000:intron | 50.0% |
| CTTCCATTGGGTAGTGCTCT+GGG | + | chr8_4:49035330-49035349 | None:intergenic | 50.0% | |
| ACACCTGTGGAGCTTCCATT+GGG | + | chr8_4:49035342-49035361 | None:intergenic | 50.0% | |
| GTGGACATGTCACAGAATGG+TGG | + | chr8_4:49035653-49035672 | None:intergenic | 50.0% | |
| GCCTTGTATTTCCCCTCATG+GGG | + | chr8_4:49036296-49036315 | None:intergenic | 50.0% | |
| CGCCTTGTATTTCCCCTCAT+GGG | + | chr8_4:49036297-49036316 | None:intergenic | 50.0% | |
| TCGCCTTGTATTTCCCCTCA+TGG | + | chr8_4:49036298-49036317 | None:intergenic | 50.0% | |
| GAAGGTTTGGGCATGTGTGA+AGG | - | chr8_4:49036402-49036421 | Msa1330000:intron | 50.0% | |
| TTGGGCATGTGTGAAGGAGA+TGG | - | chr8_4:49036408-49036427 | Msa1330000:intron | 50.0% | |
| AGGTAGGCAACTCCAACTAG+TGG | - | chr8_4:49036594-49036613 | Msa1330000:intron | 50.0% | |
| GGTAGGCAACTCCAACTAGT+GGG | - | chr8_4:49036595-49036614 | Msa1330000:intron | 50.0% | |
| GATAGTCTGGTGTGTGCACT+AGG | - | chr8_4:49036699-49036718 | Msa1330000:intron | 50.0% | |
| ! | AGGAGATGGAGAGAGCGTAA+TGG | + | chr8_4:49037425-49037444 | None:intergenic | 50.0% |
| TTACGCTCTCTCCATCTCCT+CGG | - | chr8_4:49037425-49037444 | Msa1330000:intron | 50.0% | |
| CTCCATCTCCTCGGTAGTAT+CGG | - | chr8_4:49037434-49037453 | Msa1330000:intron | 50.0% | |
| GATCTCCCAAGGAGACAAGA+TGG | - | chr8_4:49038002-49038021 | Msa1330000:CDS | 50.0% | |
| GAACCACCATCTTGTCTCCT+TGG | + | chr8_4:49038011-49038030 | None:intergenic | 50.0% | |
| CTCCTCAAACTCCTCTCGCA+AGG | - | chr8_4:49034182-49034201 | Msa1330000:three_prime_UTR | 55.0% | |
| ! | GCACCGACACTACTGATCGA+AGG | + | chr8_4:49034861-49034880 | None:intergenic | 55.0% |
| GCTTCCATTGGGTAGTGCTC+TGG | + | chr8_4:49035331-49035350 | None:intergenic | 55.0% | |
| CTACCCAATGGAAGCTCCAC+AGG | - | chr8_4:49035336-49035355 | Msa1330000:intron | 55.0% | |
| CACACCTGTGGAGCTTCCAT+TGG | + | chr8_4:49035343-49035362 | None:intergenic | 55.0% | |
| ATATGGGGATGCATTGGGGC+CGG | + | chr8_4:49035453-49035472 | None:intergenic | 55.0% | |
| TGAGAATGCTGTGCCCCATG+AGG | - | chr8_4:49036280-49036299 | Msa1330000:intron | 55.0% | |
| GAGAATGCTGTGCCCCATGA+GGG | - | chr8_4:49036281-49036300 | Msa1330000:intron | 55.0% | |
| AGAATGCTGTGCCCCATGAG+GGG | - | chr8_4:49036282-49036301 | Msa1330000:intron | 55.0% | |
| GCCCCATGAGGGGAAATACA+AGG | - | chr8_4:49036292-49036311 | Msa1330000:intron | 55.0% | |
| CAGCGTCGTTGGATCTAGGT+AGG | - | chr8_4:49036578-49036597 | Msa1330000:intron | 55.0% | |
| CACCGATACTACCGAGGAGA+TGG | + | chr8_4:49037439-49037458 | None:intergenic | 55.0% | |
| CTCCCAAGGAGACAAGATGG+TGG | - | chr8_4:49038005-49038024 | Msa1330000:CDS | 55.0% | |
| GCTCTCAAGCTCACCCGCTA+AGG | - | chr8_4:49037767-49037786 | Msa1330000:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49034078 | 49038299 | 49034078 | ID=Msa1330000;Name=Msa1330000 |
| chr8_4 | mRNA | 49034078 | 49038299 | 49034078 | ID=Msa1330000-mRNA-1;Parent=Msa1330000;Name=Msa1330000-mRNA-1;_AED=0.09;_eAED=0.09;_QI=96|0.8|0.83|1|1|1|6|251|161 |
| chr8_4 | exon | 49034078 | 49034424 | 49034078 | ID=Msa1330000-mRNA-1:exon:14154;Parent=Msa1330000-mRNA-1 |
| chr8_4 | exon | 49034589 | 49034677 | 49034589 | ID=Msa1330000-mRNA-1:exon:14153;Parent=Msa1330000-mRNA-1 |
| chr8_4 | exon | 49036879 | 49036942 | 49036879 | ID=Msa1330000-mRNA-1:exon:14152;Parent=Msa1330000-mRNA-1 |
| chr8_4 | exon | 49037020 | 49037122 | 49037020 | ID=Msa1330000-mRNA-1:exon:14151;Parent=Msa1330000-mRNA-1 |
| chr8_4 | exon | 49037989 | 49038092 | 49037989 | ID=Msa1330000-mRNA-1:exon:14150;Parent=Msa1330000-mRNA-1 |
| chr8_4 | exon | 49038174 | 49038299 | 49038174 | ID=Msa1330000-mRNA-1:exon:14149;Parent=Msa1330000-mRNA-1 |
| chr8_4 | five_prime_UTR | 49038204 | 49038299 | 49038204 | ID=Msa1330000-mRNA-1:five_prime_utr;Parent=Msa1330000-mRNA-1 |
| chr8_4 | CDS | 49038174 | 49038203 | 49038174 | ID=Msa1330000-mRNA-1:cds;Parent=Msa1330000-mRNA-1 |
| chr8_4 | CDS | 49037989 | 49038092 | 49037989 | ID=Msa1330000-mRNA-1:cds;Parent=Msa1330000-mRNA-1 |
| chr8_4 | CDS | 49037020 | 49037122 | 49037020 | ID=Msa1330000-mRNA-1:cds;Parent=Msa1330000-mRNA-1 |
| chr8_4 | CDS | 49036879 | 49036942 | 49036879 | ID=Msa1330000-mRNA-1:cds;Parent=Msa1330000-mRNA-1 |
| chr8_4 | CDS | 49034589 | 49034677 | 49034589 | ID=Msa1330000-mRNA-1:cds;Parent=Msa1330000-mRNA-1 |
| chr8_4 | CDS | 49034329 | 49034424 | 49034329 | ID=Msa1330000-mRNA-1:cds;Parent=Msa1330000-mRNA-1 |
| chr8_4 | three_prime_UTR | 49034078 | 49034328 | 49034078 | ID=Msa1330000-mRNA-1:three_prime_utr;Parent=Msa1330000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
